WARNING: (guile-user): imported module (guix build utils) overrides core binding `delete'
starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/378zjf2kgajcfd7mfr98jn5xyc5wa3qv-gzip-1.10/bin:/gnu/store/8zvc5mvk0xm3ygrxsgpyy5ilxb5rzjry-perl-5.30.2/bin:/gnu/store/vpy0bcjw0yzaj7j7qx8rfc88c7r357k3-rsync-3.1.3/bin:/gnu/store/hzx0iyg1a637zywcbhv3l9lk9fkyihgs-sed-4.8/bin:/gnu/store/sn6g1x3mbc5rhxww4lsn95kiqf6aadvy-wget-1.20.3/bin:/gnu/store/k30a2pgmc6b3ifmq3rn0dr5ng9gr8w81-which-2.21/bin:/gnu/store/v6f44zccwh9z5zk3pjlywjybbi8n2hjh-tar-1.32/bin:/gnu/store/ncydgq2znms5n1d2k5yqshhf58nsixwv-gzip-1.10/bin:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/bin:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/bin:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/bin:/gnu/store/n4n560pfvvw50a9369axw5vj5rrqfj1n-diffutils-3.7/bin:/gnu/store/cd5qf3kcnlq35p9k392pjdpdzpsnds70-patch-2.7.6/bin:/gnu/store/hic7snhayfl7m6cpfqqr73nmm19bpqkg-findutils-4.7.0/bin:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/bin:/gnu/store/ishk7fswcs4gkwcp8mh788z4mvvl9bxh-sed-4.8/bin:/gnu/store/bhs4rj58v8j1narb2454raan2ps38xd8-grep-3.4/bin:/gnu/store/57xj5gcy1jbl9ai2lnrqnpr0dald9i65-coreutils-8.32/bin:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/bin:/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin:/gnu/store/mpa04aq8lblbcviyxywxcsb1zbi0mf39-ld-wrapper-0/bin:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/bin:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/bin:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/sbin'
environment variable `PERL5LIB' set to `/gnu/store/8zvc5mvk0xm3ygrxsgpyy5ilxb5rzjry-perl-5.30.2/lib/perl5/site_perl'
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/include:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/include:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/include:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/include:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/include:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/include:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/include:/gnu/store/gfapkk5c6hvl1d94m4sqnhn7f9l5gqyh-linux-libre-headers-5.4.20/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/include:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/include:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/include:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/include:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/include:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/include:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include/c++:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/include:/gnu/store/gfapkk5c6hvl1d94m4sqnhn7f9l5gqyh-linux-libre-headers-5.4.20/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/8zvc5mvk0xm3ygrxsgpyy5ilxb5rzjry-perl-5.30.2/lib:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/lib:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/lib:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/lib:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/lib:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/lib:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/lib:/gnu/store/s3dcqzwqaakv1yx37by9chksdbkgih17-glibc-2.31-static/lib:/gnu/store/hwcky7446s952w0mwchhmm211ll07zrq-glibc-utf8-locales-2.31/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/hwcky7446s952w0mwchhmm211ll07zrq-glibc-utf8-locales-2.31/lib/locale'
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'en_US.utf8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/.travis.yml' -> `./.travis.yml'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/CMakeLists.txt' -> `./CMakeLists.txt'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/CHANGELOG.md' -> `./CHANGELOG.md'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/LICENSE' -> `./LICENSE'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/README.md' -> `./README.md'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/install_kraken2.sh' -> `./install_kraken2.sh'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/.gitignore' -> `./.gitignore'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/compact_hash.cc' -> `./src/compact_hash.cc'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/dump_table.cc' -> `./src/dump_table.cc'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/lookup_accession_numbers.cc' -> `./src/lookup_accession_numbers.cc'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/taxonomy.cc' -> `./src/taxonomy.cc'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/CMakeLists.txt' -> `./src/CMakeLists.txt'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/kv_store.h' -> `./src/kv_store.h'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/mmscanner.h' -> `./src/mmscanner.h'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/compact_hash.h' -> `./src/compact_hash.h'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/taxonomy.h' -> `./src/taxonomy.h'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/aa_translate.cc' -> `./src/aa_translate.cc'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/hyperloglogplus-bias.h' -> `./src/hyperloglogplus-bias.h'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/Makefile' -> `./src/Makefile'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/kraken2_data.h' -> `./src/kraken2_data.h'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/omp_hack.cc' -> `./src/omp_hack.cc'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/reports.cc' -> `./src/reports.cc'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/readcounts.h' -> `./src/readcounts.h'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/hyperloglogplus.cc' -> `./src/hyperloglogplus.cc'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/utilities.h' -> `./src/utilities.h'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/estimate_capacity.cc' -> `./src/estimate_capacity.cc'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/kraken2_headers.h' -> `./src/kraken2_headers.h'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/mmap_file.h' -> `./src/mmap_file.h'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/hyperloglogplus.h' -> `./src/hyperloglogplus.h'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/mmscanner.cc' -> `./src/mmscanner.cc'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/reports.h' -> `./src/reports.h'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/mmtest.cc' -> `./src/mmtest.cc'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/utilities.cc' -> `./src/utilities.cc'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/seqreader.cc' -> `./src/seqreader.cc'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/aa_translate.h' -> `./src/aa_translate.h'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/omp_hack.h' -> `./src/omp_hack.h'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/mmap_file.cc' -> `./src/mmap_file.cc'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/classify.cc' -> `./src/classify.cc'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/seqreader.h' -> `./src/seqreader.h'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/src/build_db.cc' -> `./src/build_db.cc'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/scripts/add_to_library.sh' -> `./scripts/add_to_library.sh'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/scripts/download_genomic_library.sh' -> `./scripts/download_genomic_library.sh'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/scripts/kraken2lib.pm' -> `./scripts/kraken2lib.pm'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/scripts/kraken2-inspect' -> `./scripts/kraken2-inspect'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/scripts/rsync_from_ncbi.pl' -> `./scripts/rsync_from_ncbi.pl'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/scripts/mask_low_complexity.sh' -> `./scripts/mask_low_complexity.sh'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/scripts/standard_installation.sh' -> `./scripts/standard_installation.sh'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/scripts/kraken2-build' -> `./scripts/kraken2-build'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/scripts/download_taxonomy.sh' -> `./scripts/download_taxonomy.sh'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/scripts/clean_db.sh' -> `./scripts/clean_db.sh'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/scripts/build_gg_taxonomy.pl' -> `./scripts/build_gg_taxonomy.pl'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/scripts/build_silva_taxonomy.pl' -> `./scripts/build_silva_taxonomy.pl'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/scripts/build_rdp_taxonomy.pl' -> `./scripts/build_rdp_taxonomy.pl'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/scripts/build_kraken2_db.sh' -> `./scripts/build_kraken2_db.sh'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/scripts/make_seqid2taxid_map.pl' -> `./scripts/make_seqid2taxid_map.pl'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/scripts/cp_into_tempfile.pl' -> `./scripts/cp_into_tempfile.pl'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/scripts/kraken2' -> `./scripts/kraken2'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/scripts/16S_rdp_installation.sh' -> `./scripts/16S_rdp_installation.sh'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/scripts/16S_gg_installation.sh' -> `./scripts/16S_gg_installation.sh'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/scripts/scan_fasta_file.pl' -> `./scripts/scan_fasta_file.pl'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/scripts/lookup_accession_numbers.pl' -> `./scripts/lookup_accession_numbers.pl'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/scripts/16S_silva_installation.sh' -> `./scripts/16S_silva_installation.sh'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/data/HIV_1.fa' -> `./data/HIV_1.fa'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/data/nodes.dmp' -> `./data/nodes.dmp'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/data/FluB.fa' -> `./data/FluB.fa'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/data/FluA_H3N2.fa' -> `./data/FluA_H3N2.fa'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/data/simulator.pl' -> `./data/simulator.pl'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/data/COVID_19.fa' -> `./data/COVID_19.fa'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/data/HIV_2.fa' -> `./data/HIV_2.fa'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/data/README.md' -> `./data/README.md'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/data/FluA_H1N1.fa' -> `./data/FluA_H1N1.fa'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/data/SARS.fa' -> `./data/SARS.fa'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/data/Lambda.fa' -> `./data/Lambda.fa'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/data/MERS.fa' -> `./data/MERS.fa'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/data/names.dmp' -> `./data/names.dmp'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/data/FluA_H2N2.fa' -> `./data/FluA_H2N2.fa'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/docs/MANUAL.markdown' -> `./docs/MANUAL.markdown'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/docs/Makefile' -> `./docs/Makefile'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/docs/MANUAL.html' -> `./docs/MANUAL.html'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/docs/head.html' -> `./docs/head.html'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/docs/bar-bg.png' -> `./docs/bar-bg.png'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/docs/kraken.css' -> `./docs/kraken.css'
`/gnu/store/1ardgc030mi471nbq0y379jm5lz6293j-kraken2-2.1.1-checkout/docs/top.html' -> `./docs/top.html'
phase `unpack' succeeded after 0.0 seconds
starting phase `bootstrap'
no 'configure.ac' or anything like that, doing nothing
phase `bootstrap' succeeded after 0.0 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
patch-shebang: ./data/simulator.pl: changing `/usr/bin/env perl' to `/gnu/store/8zvc5mvk0xm3ygrxsgpyy5ilxb5rzjry-perl-5.30.2/bin/perl'
patch-shebang: ./install_kraken2.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash'
patch-shebang: ./scripts/16S_gg_installation.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash'
patch-shebang: ./scripts/16S_rdp_installation.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash'
patch-shebang: ./scripts/16S_silva_installation.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash'
patch-shebang: ./scripts/add_to_library.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash'
patch-shebang: ./scripts/build_gg_taxonomy.pl: changing `/usr/bin/env perl' to `/gnu/store/8zvc5mvk0xm3ygrxsgpyy5ilxb5rzjry-perl-5.30.2/bin/perl'
patch-shebang: ./scripts/build_kraken2_db.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash'
patch-shebang: ./scripts/build_rdp_taxonomy.pl: changing `/usr/bin/env perl' to `/gnu/store/8zvc5mvk0xm3ygrxsgpyy5ilxb5rzjry-perl-5.30.2/bin/perl'
patch-shebang: ./scripts/build_silva_taxonomy.pl: changing `/usr/bin/env perl' to `/gnu/store/8zvc5mvk0xm3ygrxsgpyy5ilxb5rzjry-perl-5.30.2/bin/perl'
patch-shebang: ./scripts/clean_db.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash'
patch-shebang: ./scripts/cp_into_tempfile.pl: changing `/usr/bin/env perl' to `/gnu/store/8zvc5mvk0xm3ygrxsgpyy5ilxb5rzjry-perl-5.30.2/bin/perl'
patch-shebang: ./scripts/download_genomic_library.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash'
patch-shebang: ./scripts/download_taxonomy.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash'
patch-shebang: ./scripts/kraken2: changing `/usr/bin/env perl' to `/gnu/store/8zvc5mvk0xm3ygrxsgpyy5ilxb5rzjry-perl-5.30.2/bin/perl'
patch-shebang: ./scripts/kraken2-build: changing `/usr/bin/env perl' to `/gnu/store/8zvc5mvk0xm3ygrxsgpyy5ilxb5rzjry-perl-5.30.2/bin/perl'
patch-shebang: ./scripts/kraken2-inspect: changing `/usr/bin/env perl' to `/gnu/store/8zvc5mvk0xm3ygrxsgpyy5ilxb5rzjry-perl-5.30.2/bin/perl'
patch-shebang: ./scripts/lookup_accession_numbers.pl: changing `/usr/bin/env perl' to `/gnu/store/8zvc5mvk0xm3ygrxsgpyy5ilxb5rzjry-perl-5.30.2/bin/perl'
patch-shebang: ./scripts/make_seqid2taxid_map.pl: changing `/usr/bin/env perl' to `/gnu/store/8zvc5mvk0xm3ygrxsgpyy5ilxb5rzjry-perl-5.30.2/bin/perl'
patch-shebang: ./scripts/mask_low_complexity.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash'
patch-shebang: ./scripts/rsync_from_ncbi.pl: changing `/usr/bin/env perl' to `/gnu/store/8zvc5mvk0xm3ygrxsgpyy5ilxb5rzjry-perl-5.30.2/bin/perl'
patch-shebang: ./scripts/scan_fasta_file.pl: changing `/usr/bin/env perl' to `/gnu/store/8zvc5mvk0xm3ygrxsgpyy5ilxb5rzjry-perl-5.30.2/bin/perl'
patch-shebang: ./scripts/standard_installation.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash'
phase `patch-source-shebangs' succeeded after 0.0 seconds
starting phase `patch-generated-file-shebangs'
phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `build'
make: Entering directory '/tmp/guix-build-kraken2-2.1.1.drv-0/source/src'
g++ -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING   -c -o estimate_capacity.o estimate_capacity.cc
g++ -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING   -c -o seqreader.o seqreader.cc
g++ -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING   -c -o mmscanner.o mmscanner.cc
g++ -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING   -c -o omp_hack.o omp_hack.cc
g++ -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING   -c -o utilities.o utilities.cc
g++ -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING   -c -o build_db.o build_db.cc
g++ -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING   -c -o mmap_file.o mmap_file.cc
g++ -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING   -c -o compact_hash.o compact_hash.cc
g++ -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING   -c -o taxonomy.o taxonomy.cc
g++ -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING   -c -o classify.o classify.cc
g++ -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING   -c -o reports.o reports.cc
g++ -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING   -c -o hyperloglogplus.o hyperloglogplus.cc
g++ -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING   -c -o aa_translate.o aa_translate.cc
g++ -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING   -c -o dump_table.o dump_table.cc
g++ -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING   -c -o lookup_accession_numbers.o lookup_accession_numbers.cc
g++ -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o estimate_capacity estimate_capacity.o seqreader.o mmscanner.o omp_hack.o utilities.o
g++ -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o lookup_accession_numbers lookup_accession_numbers.o mmap_file.o omp_hack.o utilities.o
g++ -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o dump_table dump_table.o mmap_file.o compact_hash.o omp_hack.o taxonomy.o reports.o hyperloglogplus.o
g++ -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o build_db build_db.o mmap_file.o compact_hash.o taxonomy.o seqreader.o mmscanner.o omp_hack.o utilities.o
g++ -fopenmp -Wall -std=c++11 -O3 -DLINEAR_PROBING -o classify classify.o reports.o hyperloglogplus.o mmap_file.o compact_hash.o taxonomy.o seqreader.o mmscanner.o omp_hack.o aa_translate.o utilities.o
make: Leaving directory '/tmp/guix-build-kraken2-2.1.1.drv-0/source/src'
phase `build' succeeded after 4.0 seconds
starting phase `check'
test suite not run
phase `check' succeeded after 0.0 seconds
starting phase `install-scripts'
phase `install-scripts' succeeded after 0.7 seconds
## WARNING: phase `install-scripts' returned `#<unspecified>'.  Return values other than #t
## are deprecated.  Please migrate this package so that its phase
## procedures report errors by raising an exception, and otherwise
## always return #t.
starting phase `install'
make: Entering directory '/tmp/guix-build-kraken2-2.1.1.drv-0/source/src'
cp estimate_capacity build_db classify dump_table lookup_accession_numbers /gnu/store/q58fgcqjivdim7b5ffwya5hf53lk9dxv-kraken2-2.1.1/bin/
make: Leaving directory '/tmp/guix-build-kraken2-2.1.1.drv-0/source/src'
phase `install' succeeded after 0.0 seconds
starting phase `patch-shebangs'
phase `patch-shebangs' succeeded after 0.0 seconds
starting phase `strip'
stripping binaries in "/gnu/store/q58fgcqjivdim7b5ffwya5hf53lk9dxv-kraken2-2.1.1/bin" with "strip" and flags ("--strip-debug" "--enable-deterministic-archives")
phase `strip' succeeded after 0.1 seconds
starting phase `validate-runpath'
validating RUNPATH of 5 binaries in "/gnu/store/q58fgcqjivdim7b5ffwya5hf53lk9dxv-kraken2-2.1.1/bin"...
phase `validate-runpath' succeeded after 0.0 seconds
starting phase `validate-documentation-location'
phase `validate-documentation-location' succeeded after 0.0 seconds
starting phase `delete-info-dir-file'
phase `delete-info-dir-file' succeeded after 0.0 seconds
starting phase `patch-dot-desktop-files'
phase `patch-dot-desktop-files' succeeded after 0.0 seconds
starting phase `install-license-files'
installing 1 license files from '.'
phase `install-license-files' succeeded after 0.0 seconds
starting phase `reset-gzip-timestamps'
phase `reset-gzip-timestamps' succeeded after 0.0 seconds
starting phase `compress-documentation'
phase `compress-documentation' succeeded after 0.0 seconds