starting phase `separate-from-pid1'
build process now running as PID 18
phase `separate-from-pid1' succeeded after 0.0 seconds
starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/271j3n302pz5dnrbs9ymp4hp295z22mq-r-minimal-4.5.2/bin:/gnu/store/x5nk7jclncdrrsjhpmjjfl2z9p36bxyw-tar-1.35/bin:/gnu/store/vcmbby8alqahhhd5qnidpf5pbvr102jl-gzip-1.14/bin:/gnu/store/j2bib9ysq7f3369gjg6hv1kp24g07472-bzip2-1.0.8/bin:/gnu/store/plifc9akxxfyjjbnh10dj350nxbhc399-file-5.46/bin:/gnu/store/d7q1jypzi0hjx0gf2034yzljvapy7fvy-diffutils-3.12/bin:/gnu/store/3yky2jh15qsknnxnzplhj4by14sqmfig-patch-2.7.6/bin:/gnu/store/nfs39m8hsbx905q5kgjiw1irfrllkk00-findutils-4.10.0/bin:/gnu/store/xmqvvby6vlmhbi3q913ck5marh6p86av-gawk-5.3.0/bin:/gnu/store/d4bzgx28m0640plahv0x3h5hxlh1npnj-zstd-1.5.6/bin:/gnu/store/5a3p82yj9nrj6rhk11f7b2sb84wirc2k-sed-4.9/bin:/gnu/store/1lkl6hik16bbhpjjsl825fivp2dsr9vi-grep-3.11/bin:/gnu/store/gd41pn8r5723cyd6d79q9riqjbi070zz-xz-5.4.5/bin:/gnu/store/pai3hvsiihllqi03b2198qi5qq9a28ga-coreutils-9.1/bin:/gnu/store/jkxm9drwlxkmb53zn1sd7w2wxdvpbj32-make-4.4.1/bin:/gnu/store/k66i68s5l93n1lgxp29vn2292nsywp1v-bash-minimal-5.2.37/bin:/gnu/store/pazcfyngzb35khc8ad33dmsb22ibnl80-ld-wrapper-0/bin:/gnu/store/c8mp7qq5az7cbnvmxgj2bjkscsf5h9ri-binutils-2.44/bin:/gnu/store/wssvk5s5akbx78kx92bdkirrry87jvbj-gcc-14.3.0/bin:/gnu/store/yj053cys0724p7vs9kir808x7fivz17m-glibc-2.41/bin:/gnu/store/yj053cys0724p7vs9kir808x7fivz17m-glibc-2.41/sbin'
environment variable `R_LIBS_SITE' set to `/gnu/store/sdj5l6nsmryiny677np532xgrglcdnyv-r-biocgenerics-0.56.0/site-library/:/gnu/store/01jmpq3rxwkdpd7zzd7pfbywryn8ggrw-r-knitr-1.50/site-library/:/gnu/store/zg8fnwzzm0pr34mqw9lsjnsj3wi5dky9-r-runit-0.4.33.1/site-library/:/gnu/store/gb20dig3hksqgjcx2a3iwxr07hk8052h-r-cubature-2.1.4-1/site-library/:/gnu/store/gphx44rhisvsg9yp2bjss3wajvyq5924-r-doparallel-1.0.17/site-library/:/gnu/store/yqg8pmd92lmjh3aq9p650igamwwww3d5-r-evmix-2.12/site-library/:/gnu/store/6dy94m8zysdamldbb4y4i86lcf16c210-r-foreach-1.5.2/site-library/:/gnu/store/6hl9rdycd0xyzj0z6vldilcmj7blgwj6-r-magrittr-2.0.4/site-library/:/gnu/store/b3b9v5wvm15nlxxbz8s122nf4viz45j3-r-purrr-1.2.0/site-library/:/gnu/store/byjjzhyjs701vj35cy4pc9sdasxig5x2-r-truncdist-1.0-2/site-library/:/gnu/store/19w0vakn1rhaks359cgbx8bhdzvkinxd-r-vegan-2.7-2/site-library/:/gnu/store/zvjlhvkka8pmp37il27pc53ix4cfizgv-r-vgam-1.1-13/site-library/:/gnu/store/w00jbinxgx5v7z5613wny9fgq018is2n-r-generics-0.1.4/site-library/:/gnu/store/lya35pzwmilz34j0xjy93nzkfabrd0k3-r-yaml-2.3.10/site-library/:/gnu/store/211ymkqka9r3nwpvpndh5553lyqkzs5l-r-xfun-0.54/site-library/:/gnu/store/648m3jwa1n8pyziji1bzd25fzhb0v1mh-r-highr-0.11/site-library/:/gnu/store/3m2iaw61xgr6nms17y72il0lj21j32jb-r-evaluate-1.0.5/site-library/:/gnu/store/fmwnbybr2nzsrxyzsgr63gpvr78ii1gd-r-rcpp-1.1.0/site-library/:/gnu/store/wf4653r65r9vij5crdqzql8i6n718m8y-r-iterators-1.0.14/site-library/:/gnu/store/i9wfcp7q311phsvslqk0j7aaxir8i5ny-r-sparsem-1.84-2/site-library/:/gnu/store/ir1ic8a5hm72xl9443i3j42kwl1xgfpy-r-mass-7.3-65/site-library/:/gnu/store/3vbd5cd0n7lj4i1h9jd9sqxa0ncya1xj-r-gsl-2.1-9/site-library/:/gnu/store/r0251lddwiqiidc0iaqmsgssq3gfiwqq-r-codetools-0.2-20/site-library/:/gnu/store/0bksakw9zj510isa7rp33hd72fh0g8nk-r-vctrs-0.6.5/site-library/:/gnu/store/q83z93pn0nzi4agvdk6jdaihw1vdi773-r-rlang-1.1.6/site-library/:/gnu/store/2jm7igf1lhycvxmng0cf6ay06vh0f2ap-r-lifecycle-1.0.4/site-library/:/gnu/store/3vl9ljw22y3w64wf4vgm3z0a6kgr3x0v-r-cli-3.6.5/site-library/:/gnu/store/qw8s73ik61z8cp8896hqnqymdxgmbnls-r-evd-2.3-7.1/site-library/:/gnu/store/r0lw6n8c0jfsdj5apy72kgmjlyaq60p4-r-permute-0.9-8/site-library/:/gnu/store/rdkfpx2dp1b8pgpgavrfivc41dz49gh1-r-mgcv-1.9-4/site-library/:/gnu/store/h1v0a657shh8x5f5mjwrs8gkwvccl3yg-r-lattice-0.22-7/site-library/:/gnu/store/fq36bdjln3yngvpvqap0dy9310z8qpar-r-cluster-2.1.8.1/site-library/:/gnu/store/7k1d6dvd3634glwvargf1aa80brnyipr-r-glue-1.8.0/site-library/:/gnu/store/rdl4rpls8r4x1nk96cx4l5g532fj28vx-r-nlme-3.1-168/site-library/:/gnu/store/lflfqa06qdkmgm172piwb4im5ksqr3y5-r-matrix-1.7-4/site-library/'
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/j2bib9ysq7f3369gjg6hv1kp24g07472-bzip2-1.0.8/include:/gnu/store/plifc9akxxfyjjbnh10dj350nxbhc399-file-5.46/include:/gnu/store/xmqvvby6vlmhbi3q913ck5marh6p86av-gawk-5.3.0/include:/gnu/store/gd41pn8r5723cyd6d79q9riqjbi070zz-xz-5.4.5/include:/gnu/store/jkxm9drwlxkmb53zn1sd7w2wxdvpbj32-make-4.4.1/include:/gnu/store/c8mp7qq5az7cbnvmxgj2bjkscsf5h9ri-binutils-2.44/include:/gnu/store/wssvk5s5akbx78kx92bdkirrry87jvbj-gcc-14.3.0/include:/gnu/store/yj053cys0724p7vs9kir808x7fivz17m-glibc-2.41/include:/gnu/store/90qwxdmdw7jdf0dkkgdgxln6b5a57kzx-linux-libre-headers-6.12.17/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/j2bib9ysq7f3369gjg6hv1kp24g07472-bzip2-1.0.8/include:/gnu/store/plifc9akxxfyjjbnh10dj350nxbhc399-file-5.46/include:/gnu/store/xmqvvby6vlmhbi3q913ck5marh6p86av-gawk-5.3.0/include:/gnu/store/gd41pn8r5723cyd6d79q9riqjbi070zz-xz-5.4.5/include:/gnu/store/jkxm9drwlxkmb53zn1sd7w2wxdvpbj32-make-4.4.1/include:/gnu/store/c8mp7qq5az7cbnvmxgj2bjkscsf5h9ri-binutils-2.44/include:/gnu/store/wssvk5s5akbx78kx92bdkirrry87jvbj-gcc-14.3.0/include/c++:/gnu/store/wssvk5s5akbx78kx92bdkirrry87jvbj-gcc-14.3.0/include:/gnu/store/yj053cys0724p7vs9kir808x7fivz17m-glibc-2.41/include:/gnu/store/90qwxdmdw7jdf0dkkgdgxln6b5a57kzx-linux-libre-headers-6.12.17/include'
environment variable `OBJC_INCLUDE_PATH' set to `/gnu/store/j2bib9ysq7f3369gjg6hv1kp24g07472-bzip2-1.0.8/include:/gnu/store/plifc9akxxfyjjbnh10dj350nxbhc399-file-5.46/include:/gnu/store/xmqvvby6vlmhbi3q913ck5marh6p86av-gawk-5.3.0/include:/gnu/store/gd41pn8r5723cyd6d79q9riqjbi070zz-xz-5.4.5/include:/gnu/store/jkxm9drwlxkmb53zn1sd7w2wxdvpbj32-make-4.4.1/include:/gnu/store/c8mp7qq5az7cbnvmxgj2bjkscsf5h9ri-binutils-2.44/include:/gnu/store/wssvk5s5akbx78kx92bdkirrry87jvbj-gcc-14.3.0/include:/gnu/store/yj053cys0724p7vs9kir808x7fivz17m-glibc-2.41/include:/gnu/store/90qwxdmdw7jdf0dkkgdgxln6b5a57kzx-linux-libre-headers-6.12.17/include'
environment variable `OBJCPLUS_INCLUDE_PATH' set to `/gnu/store/j2bib9ysq7f3369gjg6hv1kp24g07472-bzip2-1.0.8/include:/gnu/store/plifc9akxxfyjjbnh10dj350nxbhc399-file-5.46/include:/gnu/store/xmqvvby6vlmhbi3q913ck5marh6p86av-gawk-5.3.0/include:/gnu/store/gd41pn8r5723cyd6d79q9riqjbi070zz-xz-5.4.5/include:/gnu/store/jkxm9drwlxkmb53zn1sd7w2wxdvpbj32-make-4.4.1/include:/gnu/store/c8mp7qq5az7cbnvmxgj2bjkscsf5h9ri-binutils-2.44/include:/gnu/store/wssvk5s5akbx78kx92bdkirrry87jvbj-gcc-14.3.0/include/c++:/gnu/store/wssvk5s5akbx78kx92bdkirrry87jvbj-gcc-14.3.0/include:/gnu/store/yj053cys0724p7vs9kir808x7fivz17m-glibc-2.41/include:/gnu/store/90qwxdmdw7jdf0dkkgdgxln6b5a57kzx-linux-libre-headers-6.12.17/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/271j3n302pz5dnrbs9ymp4hp295z22mq-r-minimal-4.5.2/lib:/gnu/store/j2bib9ysq7f3369gjg6hv1kp24g07472-bzip2-1.0.8/lib:/gnu/store/plifc9akxxfyjjbnh10dj350nxbhc399-file-5.46/lib:/gnu/store/xmqvvby6vlmhbi3q913ck5marh6p86av-gawk-5.3.0/lib:/gnu/store/gd41pn8r5723cyd6d79q9riqjbi070zz-xz-5.4.5/lib:/gnu/store/c8mp7qq5az7cbnvmxgj2bjkscsf5h9ri-binutils-2.44/lib:/gnu/store/yj053cys0724p7vs9kir808x7fivz17m-glibc-2.41/lib:/gnu/store/q1s19kv8bdq9ssfdgznzgkmfmj90vdfd-glibc-2.41-static/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/yj053cys0724p7vs9kir808x7fivz17m-glibc-2.41/lib/locale'
environment variable `TZDIR' unset
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'C.UTF-8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
powerTCR/DESCRIPTION
powerTCR/LICENSE
powerTCR/MD5
powerTCR/NAMESPACE
powerTCR/NEWS
powerTCR/R/
powerTCR/R/accession_calls.R
powerTCR/R/comparative_analysis.R
powerTCR/R/desponds_functions.R
powerTCR/R/file_readers.R
powerTCR/R/hidden_functions.R
powerTCR/R/main_functions.R
powerTCR/README.md
powerTCR/build/
powerTCR/build/vignette.rds
powerTCR/data/
powerTCR/data/repertoires.rda
powerTCR/inst/
powerTCR/inst/doc/
powerTCR/inst/doc/powerTCR.R
powerTCR/inst/doc/powerTCR.Rmd
powerTCR/inst/doc/powerTCR.html
powerTCR/inst/unitTests/
powerTCR/inst/unitTests/test_stuff.R
powerTCR/man/
powerTCR/man/Accessors.Rd
powerTCR/man/JS_desponds.Rd
powerTCR/man/JS_dist.Rd
powerTCR/man/JS_spliced.Rd
powerTCR/man/clusterPlot.Rd
powerTCR/man/discgammagpd.Rd
powerTCR/man/fdesponds.Rd
powerTCR/man/fdiscgammagpd.Rd
powerTCR/man/get_bootstraps.Rd
powerTCR/man/get_distances.Rd
powerTCR/man/parse.Rd
powerTCR/man/repertoires.Rd
powerTCR/tests/
powerTCR/tests/runTests.R
powerTCR/vignettes/
powerTCR/vignettes/powerTCR.Rmd
phase `unpack' succeeded after 0.0 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
phase `patch-source-shebangs' succeeded after 0.0 seconds
starting phase `patch-generated-file-shebangs'
phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `install'
* installing *source* package ‘powerTCR’ ...
** this is package ‘powerTCR’ version ‘1.30.0’
** package ‘powerTCR’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** tests
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (powerTCR)
phase `install' succeeded after 10.9 seconds
starting phase `check'
Running specific tests for package ‘powerTCR’
  Running ‘runTests.R’
Running vignettes for package ‘powerTCR’
phase `check' succeeded after 6.4 seconds
starting phase `patch-shebangs'
phase `patch-shebangs' succeeded after 0.0 seconds
starting phase `strip'
phase `strip' succeeded after 0.0 seconds
starting phase `validate-runpath'
phase `validate-runpath' succeeded after 0.0 seconds
starting phase `validate-documentation-location'
phase `validate-documentation-location' succeeded after 0.0 seconds
starting phase `delete-info-dir-file'
phase `delete-info-dir-file' succeeded after 0.0 seconds
starting phase `patch-dot-desktop-files'
phase `patch-dot-desktop-files' succeeded after 0.0 seconds
starting phase `make-dynamic-linker-cache'
phase `make-dynamic-linker-cache' succeeded after 0.0 seconds
starting phase `install-license-files'
installing 1 license files from '.'
phase `install-license-files' succeeded after 0.0 seconds
starting phase `reset-gzip-timestamps'
phase `reset-gzip-timestamps' succeeded after 0.0 seconds
starting phase `compress-documentation'
phase `compress-documentation' succeeded after 0.0 seconds