WARNING: (guile-user): imported module (guix build utils) overrides core binding `delete'
starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/q9bv946bsabl7jcdyh42gf05p7wxq25l-meson-for-build-0.53.2/bin:/gnu/store/57rl5wpbcssagzqz56gqi34dhpznl0hw-ninja-1.10.0/bin:/gnu/store/krpyb0zi700dcrg9cc8932w4v0qivdg9-pkg-config-0.29.2/bin:/gnu/store/bvd09gb8ka642jzgxd2lpqlpdp160gn0-python-wrapper-3.8.2/bin:/gnu/store/2n46h0nq9ihsrs07x3r5mnvi86x6kf03-samtools-1.11/bin:/gnu/store/02x2wdjwnp8va1ww9hm0vx118j7w7nyv-htslib-1.11/bin:/gnu/store/v6f44zccwh9z5zk3pjlywjybbi8n2hjh-tar-1.32/bin:/gnu/store/ncydgq2znms5n1d2k5yqshhf58nsixwv-gzip-1.10/bin:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/bin:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/bin:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/bin:/gnu/store/n4n560pfvvw50a9369axw5vj5rrqfj1n-diffutils-3.7/bin:/gnu/store/cd5qf3kcnlq35p9k392pjdpdzpsnds70-patch-2.7.6/bin:/gnu/store/hic7snhayfl7m6cpfqqr73nmm19bpqkg-findutils-4.7.0/bin:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/bin:/gnu/store/ishk7fswcs4gkwcp8mh788z4mvvl9bxh-sed-4.8/bin:/gnu/store/bhs4rj58v8j1narb2454raan2ps38xd8-grep-3.4/bin:/gnu/store/57xj5gcy1jbl9ai2lnrqnpr0dald9i65-coreutils-8.32/bin:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/bin:/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin:/gnu/store/mpa04aq8lblbcviyxywxcsb1zbi0mf39-ld-wrapper-0/bin:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/bin:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/bin:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/sbin:/gnu/store/rz42ba0my9vrgbkjpkzr2drmnjk5ah50-python-3.8.2/bin'
environment variable `PKG_CONFIG_PATH' set to `/gnu/store/fhqxb6bylxvfzw8329661msp1krc509f-googletest-1.10.0/lib/pkgconfig:/gnu/store/02x2wdjwnp8va1ww9hm0vx118j7w7nyv-htslib-1.11/lib/pkgconfig:/gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/lib/pkgconfig:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/lib/pkgconfig:/gnu/store/rz42ba0my9vrgbkjpkzr2drmnjk5ah50-python-3.8.2/lib/pkgconfig'
environment variable `PYTHONPATH' set to `/gnu/store/q9bv946bsabl7jcdyh42gf05p7wxq25l-meson-for-build-0.53.2/lib/python3.8/site-packages:/gnu/store/rz42ba0my9vrgbkjpkzr2drmnjk5ah50-python-3.8.2/lib/python3.8/site-packages'
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/fhqxb6bylxvfzw8329661msp1krc509f-googletest-1.10.0/include:/gnu/store/kxabg9r2wnb4inc5lvh7r4wxnpj5f8kr-boost-1.72.0/include:/gnu/store/2n46h0nq9ihsrs07x3r5mnvi86x6kf03-samtools-1.11/include:/gnu/store/02x2wdjwnp8va1ww9hm0vx118j7w7nyv-htslib-1.11/include:/gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/include:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/include:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/include:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/include:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/include:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/include:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/include:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/include:/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include:/gnu/store/rz42ba0my9vrgbkjpkzr2drmnjk5ah50-python-3.8.2/include:/gnu/store/gfapkk5c6hvl1d94m4sqnhn7f9l5gqyh-linux-libre-headers-5.4.20/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/fhqxb6bylxvfzw8329661msp1krc509f-googletest-1.10.0/include:/gnu/store/kxabg9r2wnb4inc5lvh7r4wxnpj5f8kr-boost-1.72.0/include:/gnu/store/2n46h0nq9ihsrs07x3r5mnvi86x6kf03-samtools-1.11/include:/gnu/store/02x2wdjwnp8va1ww9hm0vx118j7w7nyv-htslib-1.11/include:/gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/include:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/include:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/include:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/include:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/include:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/include:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/include:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include/c++:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/include:/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include:/gnu/store/rz42ba0my9vrgbkjpkzr2drmnjk5ah50-python-3.8.2/include:/gnu/store/gfapkk5c6hvl1d94m4sqnhn7f9l5gqyh-linux-libre-headers-5.4.20/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/q9bv946bsabl7jcdyh42gf05p7wxq25l-meson-for-build-0.53.2/lib:/gnu/store/fhqxb6bylxvfzw8329661msp1krc509f-googletest-1.10.0/lib:/gnu/store/kxabg9r2wnb4inc5lvh7r4wxnpj5f8kr-boost-1.72.0/lib:/gnu/store/2n46h0nq9ihsrs07x3r5mnvi86x6kf03-samtools-1.11/lib:/gnu/store/02x2wdjwnp8va1ww9hm0vx118j7w7nyv-htslib-1.11/lib:/gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/lib:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/lib:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/lib:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/lib:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/lib:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/lib:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/lib:/gnu/store/s3dcqzwqaakv1yx37by9chksdbkgih17-glibc-2.31-static/lib:/gnu/store/hwcky7446s952w0mwchhmm211ll07zrq-glibc-utf8-locales-2.31/lib:/gnu/store/rz42ba0my9vrgbkjpkzr2drmnjk5ah50-python-3.8.2/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/hwcky7446s952w0mwchhmm211ll07zrq-glibc-utf8-locales-2.31/lib/locale'
phase `set-paths' succeeded after 1.5 seconds
starting phase `install-locale'
using 'en_US.utf8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/meson.build' -> `./meson.build'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/INSTALL.md' -> `./INSTALL.md'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/.travis.yml' -> `./.travis.yml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/LICENSE.txt' -> `./LICENSE.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/.gitignore' -> `./.gitignore'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/CHANGELOG.md' -> `./CHANGELOG.md'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/README.md' -> `./README.md'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/meson_options.txt' -> `./meson_options.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/.clang-format' -> `./.clang-format'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/bamboo_build.sh' -> `./bamboo_build.sh'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/scripts/ci/test.sh' -> `./scripts/ci/test.sh'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/scripts/ci/setup.sh' -> `./scripts/ci/setup.sh'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/scripts/ci/build.sh' -> `./scripts/ci/build.sh'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/scripts/ci/artifact.sh' -> `./scripts/ci/artifact.sh'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/scripts/ci/install.sh' -> `./scripts/ci/install.sh'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/meson.build' -> `./include/meson.build'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/QualityValues.h' -> `./include/pbbam/QualityValues.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/PbiFilter.h' -> `./include/pbbam/PbiFilter.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/FastaWriter.h' -> `./include/pbbam/FastaWriter.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/BamFile.h' -> `./include/pbbam/BamFile.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/IRecordWriter.h' -> `./include/pbbam/IRecordWriter.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/BamRecordImpl.h' -> `./include/pbbam/BamRecordImpl.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/FastqReader.h' -> `./include/pbbam/FastqReader.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/ProgramInfo.h' -> `./include/pbbam/ProgramInfo.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/Config.h' -> `./include/pbbam/Config.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/Tag.h' -> `./include/pbbam/Tag.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/PbiFilterQuery.h' -> `./include/pbbam/PbiFilterQuery.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/DataSetTypes.h' -> `./include/pbbam/DataSetTypes.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/Position.h' -> `./include/pbbam/Position.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/Compare.h' -> `./include/pbbam/Compare.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/DataSet.h' -> `./include/pbbam/DataSet.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/GenomicInterval.h' -> `./include/pbbam/GenomicInterval.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/FastaReader.h' -> `./include/pbbam/FastaReader.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/BamRecordTag.h' -> `./include/pbbam/BamRecordTag.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/BamReader.h' -> `./include/pbbam/BamReader.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/Orientation.h' -> `./include/pbbam/Orientation.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/MoveAppend.h' -> `./include/pbbam/MoveAppend.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/ZmwType.h' -> `./include/pbbam/ZmwType.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/PbiBasicTypes.h' -> `./include/pbbam/PbiBasicTypes.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/ReadGroupInfo.h' -> `./include/pbbam/ReadGroupInfo.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/ClipType.h' -> `./include/pbbam/ClipType.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/FastaSequenceQuery.h' -> `./include/pbbam/FastaSequenceQuery.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/FastaCache.h' -> `./include/pbbam/FastaCache.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/LocalContextFlags.h' -> `./include/pbbam/LocalContextFlags.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/RecordType.h' -> `./include/pbbam/RecordType.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/SamWriter.h' -> `./include/pbbam/SamWriter.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/PbiIndexedBamReader.h' -> `./include/pbbam/PbiIndexedBamReader.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/Accuracy.h' -> `./include/pbbam/Accuracy.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/GenomicIntervalQuery.h' -> `./include/pbbam/GenomicIntervalQuery.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/Interval.h' -> `./include/pbbam/Interval.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/PbiFilterTypes.h' -> `./include/pbbam/PbiFilterTypes.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/PbiFile.h' -> `./include/pbbam/PbiFile.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/PbiBuilder.h' -> `./include/pbbam/PbiBuilder.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/CompositeBamReader.h' -> `./include/pbbam/CompositeBamReader.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/BamRecord.h' -> `./include/pbbam/BamRecord.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/BamHeader.h' -> `./include/pbbam/BamHeader.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/BamTagCodec.h' -> `./include/pbbam/BamTagCodec.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/IndexedFastaReader.h' -> `./include/pbbam/IndexedFastaReader.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/BamFileMerger.h' -> `./include/pbbam/BamFileMerger.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/Cigar.h' -> `./include/pbbam/Cigar.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/MakeUnique.h' -> `./include/pbbam/MakeUnique.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/ZmwQuery.h' -> `./include/pbbam/ZmwQuery.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/BaiIndexedBamReader.h' -> `./include/pbbam/BaiIndexedBamReader.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/IndexedBamWriter.h' -> `./include/pbbam/IndexedBamWriter.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/PulseExclusionReason.h' -> `./include/pbbam/PulseExclusionReason.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/AlignmentPrinter.h' -> `./include/pbbam/AlignmentPrinter.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/FastaSequence.h' -> `./include/pbbam/FastaSequence.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/SamTagCodec.h' -> `./include/pbbam/SamTagCodec.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/MD5.h' -> `./include/pbbam/MD5.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/SequenceInfo.h' -> `./include/pbbam/SequenceInfo.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/Strand.h' -> `./include/pbbam/Strand.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/BarcodeQuery.h' -> `./include/pbbam/BarcodeQuery.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/Validator.h' -> `./include/pbbam/Validator.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/Unused.h' -> `./include/pbbam/Unused.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/FastqWriter.h' -> `./include/pbbam/FastqWriter.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/QNameQuery.h' -> `./include/pbbam/QNameQuery.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/ZmwGroupQuery.h' -> `./include/pbbam/ZmwGroupQuery.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/FastqSequence.h' -> `./include/pbbam/FastqSequence.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/PbiRawData.h' -> `./include/pbbam/PbiRawData.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/Frames.h' -> `./include/pbbam/Frames.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/BamWriter.h' -> `./include/pbbam/BamWriter.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/SubreadLengthQuery.h' -> `./include/pbbam/SubreadLengthQuery.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/TagCollection.h' -> `./include/pbbam/TagCollection.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/StringUtilities.h' -> `./include/pbbam/StringUtilities.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/FrameEncodingType.h' -> `./include/pbbam/FrameEncodingType.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/DataSetXsd.h' -> `./include/pbbam/DataSetXsd.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/BamRecordBuilder.h' -> `./include/pbbam/BamRecordBuilder.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/QualityValue.h' -> `./include/pbbam/QualityValue.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/CigarOperation.h' -> `./include/pbbam/CigarOperation.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/CompositeFastaReader.h' -> `./include/pbbam/CompositeFastaReader.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/EntireFileQuery.h' -> `./include/pbbam/EntireFileQuery.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/ReadAccuracyQuery.h' -> `./include/pbbam/ReadAccuracyQuery.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/PulseBehavior.h' -> `./include/pbbam/PulseBehavior.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/BamRecordView.h' -> `./include/pbbam/BamRecordView.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/ZmwTypeMap.h' -> `./include/pbbam/ZmwTypeMap.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/virtual/VirtualZmwBamRecord.h' -> `./include/pbbam/virtual/VirtualZmwBamRecord.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/virtual/VirtualRegionType.h' -> `./include/pbbam/virtual/VirtualRegionType.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/virtual/VirtualPolymeraseReader.h' -> `./include/pbbam/virtual/VirtualPolymeraseReader.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/virtual/VirtualPolymeraseCompositeReader.h' -> `./include/pbbam/virtual/VirtualPolymeraseCompositeReader.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/virtual/ZmwWhitelistVirtualReader.h' -> `./include/pbbam/virtual/ZmwWhitelistVirtualReader.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/virtual/VirtualRegion.h' -> `./include/pbbam/virtual/VirtualRegion.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/virtual/ZmwReadStitcher.h' -> `./include/pbbam/virtual/ZmwReadStitcher.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/virtual/VirtualRegionTypeMap.h' -> `./include/pbbam/virtual/VirtualRegionTypeMap.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/virtual/VirtualPolymeraseBamRecord.h' -> `./include/pbbam/virtual/VirtualPolymeraseBamRecord.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/virtual/WhitelistedZmwReadStitcher.h' -> `./include/pbbam/virtual/WhitelistedZmwReadStitcher.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/vcf/VcfFile.h' -> `./include/pbbam/vcf/VcfFile.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/vcf/VcfVariant.h' -> `./include/pbbam/vcf/VcfVariant.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/vcf/VcfHeader.h' -> `./include/pbbam/vcf/VcfHeader.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/vcf/VcfQuery.h' -> `./include/pbbam/vcf/VcfQuery.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/vcf/VcfWriter.h' -> `./include/pbbam/vcf/VcfWriter.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/vcf/VcfFormat.h' -> `./include/pbbam/vcf/VcfFormat.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/vcf/VcfHeaderTypes.h' -> `./include/pbbam/vcf/VcfHeaderTypes.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/vcf/VcfSort.h' -> `./include/pbbam/vcf/VcfSort.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/vcf/VcfReader.h' -> `./include/pbbam/vcf/VcfReader.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/exception/BundleChemistryMappingException.h' -> `./include/pbbam/exception/BundleChemistryMappingException.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/exception/InvalidSequencingChemistryException.h' -> `./include/pbbam/exception/InvalidSequencingChemistryException.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/exception/ValidationException.h' -> `./include/pbbam/exception/ValidationException.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/internal/DataSetElement.h' -> `./include/pbbam/internal/DataSetElement.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/internal/PbiBasicTypes.inl' -> `./include/pbbam/internal/PbiBasicTypes.inl'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/internal/DataSetBaseTypes.h' -> `./include/pbbam/internal/DataSetBaseTypes.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/internal/CompositeBamReader.inl' -> `./include/pbbam/internal/CompositeBamReader.inl'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/internal/DataSetElement.inl' -> `./include/pbbam/internal/DataSetElement.inl'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/internal/PbiFilterTypes.inl' -> `./include/pbbam/internal/PbiFilterTypes.inl'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/internal/QueryBase.inl' -> `./include/pbbam/internal/QueryBase.inl'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/internal/Interval.inl' -> `./include/pbbam/internal/Interval.inl'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/internal/Compare.inl' -> `./include/pbbam/internal/Compare.inl'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/internal/PbiFilter.inl' -> `./include/pbbam/internal/PbiFilter.inl'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/include/pbbam/internal/QueryBase.h' -> `./include/pbbam/internal/QueryBase.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/format-all' -> `./tools/format-all'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/meson.build' -> `./tools/meson.build'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/git-clang-format' -> `./tools/git-clang-format'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/check-formatting' -> `./tools/check-formatting'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/Linux/clang-format' -> `./tools/Linux/clang-format'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/pbindexdump/src/CppFormatter.h' -> `./tools/pbindexdump/src/CppFormatter.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/pbindexdump/src/PbIndexDumpVersion.h.in' -> `./tools/pbindexdump/src/PbIndexDumpVersion.h.in'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/pbindexdump/src/JsonFormatter.h' -> `./tools/pbindexdump/src/JsonFormatter.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/pbindexdump/src/main.cpp' -> `./tools/pbindexdump/src/main.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/pbindexdump/src/Settings.h' -> `./tools/pbindexdump/src/Settings.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/pbindexdump/src/CppFormatter.cpp' -> `./tools/pbindexdump/src/CppFormatter.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/pbindexdump/src/PbIndexDump.h' -> `./tools/pbindexdump/src/PbIndexDump.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/pbindexdump/src/JsonFormatter.cpp' -> `./tools/pbindexdump/src/JsonFormatter.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/pbindexdump/src/IFormatter.h' -> `./tools/pbindexdump/src/IFormatter.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/pbindexdump/src/PbIndexDump.cpp' -> `./tools/pbindexdump/src/PbIndexDump.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/pbindexdump/src/json.hpp' -> `./tools/pbindexdump/src/json.hpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/bam2sam/src/Bam2SamVersion.h.in' -> `./tools/bam2sam/src/Bam2SamVersion.h.in'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/bam2sam/src/Bam2Sam.h' -> `./tools/bam2sam/src/Bam2Sam.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/bam2sam/src/main.cpp' -> `./tools/bam2sam/src/main.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/bam2sam/src/Settings.h' -> `./tools/bam2sam/src/Settings.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/bam2sam/src/Bam2Sam.cpp' -> `./tools/bam2sam/src/Bam2Sam.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/win32/clang-format.exe' -> `./tools/win32/clang-format.exe'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/pbbamify/src/PbBamifyVersion.h.in' -> `./tools/pbbamify/src/PbBamifyVersion.h.in'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/pbbamify/src/PbBamify.h' -> `./tools/pbbamify/src/PbBamify.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/pbbamify/src/main.cpp' -> `./tools/pbbamify/src/main.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/pbbamify/src/PbBamify.cpp' -> `./tools/pbbamify/src/PbBamify.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/pbbamify/src/QueryLookup.cpp' -> `./tools/pbbamify/src/QueryLookup.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/pbbamify/src/QueryLookup.h' -> `./tools/pbbamify/src/QueryLookup.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/pbmerge/src/PbMergeVersion.h.in' -> `./tools/pbmerge/src/PbMergeVersion.h.in'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/pbmerge/src/main.cpp' -> `./tools/pbmerge/src/main.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/Darwin/clang-format' -> `./tools/Darwin/clang-format'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/common/OptionParser.cpp' -> `./tools/common/OptionParser.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/common/OptionParser.h' -> `./tools/common/OptionParser.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/pbindex/src/PbIndex.cpp' -> `./tools/pbindex/src/PbIndex.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/pbindex/src/main.cpp' -> `./tools/pbindex/src/main.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/pbindex/src/PbIndex.h' -> `./tools/pbindex/src/PbIndex.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tools/pbindex/src/PbIndexVersion.h.in' -> `./tools/pbindex/src/PbIndexVersion.h.in'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/meson.build' -> `./docs/meson.build'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/Doxyfile.in' -> `./docs/Doxyfile.in'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/Makefile' -> `./docs/Makefile'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/getting_started.rst' -> `./docs/source/getting_started.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/conf.py' -> `./docs/source/conf.py'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api_reference.rst' -> `./docs/source/api_reference.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/index.rst' -> `./docs/source/index.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/requirements.txt' -> `./docs/source/requirements.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/commandline_utilities.rst' -> `./docs/source/commandline_utilities.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/Position.rst' -> `./docs/source/api/Position.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/Compare.rst' -> `./docs/source/api/Compare.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/Accuracy.rst' -> `./docs/source/api/Accuracy.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/QNameQuery.rst' -> `./docs/source/api/QNameQuery.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/BamFile.rst' -> `./docs/source/api/BamFile.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/BamRecordView.rst' -> `./docs/source/api/BamRecordView.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/AlignmentSet.rst' -> `./docs/source/api/AlignmentSet.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/PbiRawMappedData.rst' -> `./docs/source/api/PbiRawMappedData.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/PbiRawReferenceData.rst' -> `./docs/source/api/PbiRawReferenceData.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/BamRecordBuilder.rst' -> `./docs/source/api/BamRecordBuilder.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/GenomicIntervalQuery.rst' -> `./docs/source/api/GenomicIntervalQuery.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/ConsensusReadSet.rst' -> `./docs/source/api/ConsensusReadSet.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/FileIndices.rst' -> `./docs/source/api/FileIndices.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/AlignmentPrinter.rst' -> `./docs/source/api/AlignmentPrinter.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/PbiRawData.rst' -> `./docs/source/api/PbiRawData.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/VirtualRegionTypeMap.rst' -> `./docs/source/api/VirtualRegionTypeMap.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/InvalidSequencingChemistryException.rst' -> `./docs/source/api/InvalidSequencingChemistryException.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/PbiFilterCompositeBamReader.rst' -> `./docs/source/api/PbiFilterCompositeBamReader.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/IndexedFastaReader.rst' -> `./docs/source/api/IndexedFastaReader.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/BamTagCodec.rst' -> `./docs/source/api/BamTagCodec.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/DataSetMetadata.rst' -> `./docs/source/api/DataSetMetadata.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/BamWriter.rst' -> `./docs/source/api/BamWriter.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/SubDataSets.rst' -> `./docs/source/api/SubDataSets.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/ContigSet.rst' -> `./docs/source/api/ContigSet.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/CigarOperation.rst' -> `./docs/source/api/CigarOperation.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/LocalContextFlags.rst' -> `./docs/source/api/LocalContextFlags.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/Frames.rst' -> `./docs/source/api/Frames.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/IndexResultBlock.rst' -> `./docs/source/api/IndexResultBlock.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/VirtualRegionType.rst' -> `./docs/source/api/VirtualRegionType.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/TagCollection.rst' -> `./docs/source/api/TagCollection.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/PbiRawBasicData.rst' -> `./docs/source/api/PbiRawBasicData.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/DataSet.rst' -> `./docs/source/api/DataSet.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/ReferenceSet.rst' -> `./docs/source/api/ReferenceSet.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/EntireFileQuery.rst' -> `./docs/source/api/EntireFileQuery.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/NamespaceRegistry.rst' -> `./docs/source/api/NamespaceRegistry.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/Cigar.rst' -> `./docs/source/api/Cigar.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/SubreadSet.rst' -> `./docs/source/api/SubreadSet.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/DataSetBase.rst' -> `./docs/source/api/DataSetBase.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/BamRecord.rst' -> `./docs/source/api/BamRecord.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/BarcodeQuery.rst' -> `./docs/source/api/BarcodeQuery.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/Extensions.rst' -> `./docs/source/api/Extensions.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/ExtensionElement.rst' -> `./docs/source/api/ExtensionElement.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/PbiBuilder.rst' -> `./docs/source/api/PbiBuilder.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/PbiReferenceEntry.rst' -> `./docs/source/api/PbiReferenceEntry.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/Filter.rst' -> `./docs/source/api/Filter.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/FileIndex.rst' -> `./docs/source/api/FileIndex.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/Interval.rst' -> `./docs/source/api/Interval.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/Config.rst' -> `./docs/source/api/Config.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/VirtualPolymeraseReader.rst' -> `./docs/source/api/VirtualPolymeraseReader.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/PbiIndexedBamReader.rst' -> `./docs/source/api/PbiIndexedBamReader.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/BamRecordImpl.rst' -> `./docs/source/api/BamRecordImpl.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/ReadAccuracyQuery.rst' -> `./docs/source/api/ReadAccuracyQuery.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/Filters.rst' -> `./docs/source/api/Filters.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/ExternalResources.rst' -> `./docs/source/api/ExternalResources.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/PbiFilterQuery.rst' -> `./docs/source/api/PbiFilterQuery.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/ExternalResource.rst' -> `./docs/source/api/ExternalResource.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/BaiIndexedBamReader.rst' -> `./docs/source/api/BaiIndexedBamReader.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/GenomicIntervalCompositeBamReader.rst' -> `./docs/source/api/GenomicIntervalCompositeBamReader.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/PbiRawBarcodeData.rst' -> `./docs/source/api/PbiRawBarcodeData.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/PbiFilterTypes.rst' -> `./docs/source/api/PbiFilterTypes.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/ConsensusAlignmentSet.rst' -> `./docs/source/api/ConsensusAlignmentSet.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/PbiFile.rst' -> `./docs/source/api/PbiFile.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/Tag.rst' -> `./docs/source/api/Tag.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/NamespaceInfo.rst' -> `./docs/source/api/NamespaceInfo.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/Strand.rst' -> `./docs/source/api/Strand.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/VirtualRegion.rst' -> `./docs/source/api/VirtualRegion.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/SequenceInfo.rst' -> `./docs/source/api/SequenceInfo.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/ZmwQuery.rst' -> `./docs/source/api/ZmwQuery.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/Orientation.rst' -> `./docs/source/api/Orientation.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/BarcodeSet.rst' -> `./docs/source/api/BarcodeSet.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/VirtualPolymeraseCompositeReader.rst' -> `./docs/source/api/VirtualPolymeraseCompositeReader.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/QualityValues.rst' -> `./docs/source/api/QualityValues.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/BamReader.rst' -> `./docs/source/api/BamReader.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/QualityValue.rst' -> `./docs/source/api/QualityValue.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/ZmwWhitelistVirtualReader.rst' -> `./docs/source/api/ZmwWhitelistVirtualReader.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/SamTagCodec.rst' -> `./docs/source/api/SamTagCodec.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/PbiFilter.rst' -> `./docs/source/api/PbiFilter.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/ParentTool.rst' -> `./docs/source/api/ParentTool.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/GenomicInterval.rst' -> `./docs/source/api/GenomicInterval.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/SequentialCompositeBamReader.rst' -> `./docs/source/api/SequentialCompositeBamReader.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/HdfSubreadSet.rst' -> `./docs/source/api/HdfSubreadSet.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/SubreadLengthQuery.rst' -> `./docs/source/api/SubreadLengthQuery.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/ZmwGroupQuery.rst' -> `./docs/source/api/ZmwGroupQuery.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/VirtualPolymeraseBamRecord.rst' -> `./docs/source/api/VirtualPolymeraseBamRecord.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/BamHeader.rst' -> `./docs/source/api/BamHeader.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/ProgramInfo.rst' -> `./docs/source/api/ProgramInfo.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/api/ReadGroupInfo.rst' -> `./docs/source/api/ReadGroupInfo.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/tools/pbmerge.rst' -> `./docs/source/tools/pbmerge.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/tools/pbindex.rst' -> `./docs/source/tools/pbindex.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/tools/pbindexdump.rst' -> `./docs/source/tools/pbindexdump.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/tools/bam2sam.rst' -> `./docs/source/tools/bam2sam.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/pacbio-theme/theme.conf' -> `./docs/source/pacbio-theme/theme.conf'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/pacbio-theme/static/pacbioLogo.png' -> `./docs/source/pacbio-theme/static/pacbioLogo.png'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/pacbio-theme/static/pacbio.css' -> `./docs/source/pacbio-theme/static/pacbio.css'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/pacbio-theme/static/pygments.css' -> `./docs/source/pacbio-theme/static/pygments.css'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/source/pacbio-theme/static/headerGradient.jpg' -> `./docs/source/pacbio-theme/static/headerGradient.jpg'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/plaintext/AlignmentPrinterOutput.txt' -> `./docs/examples/plaintext/AlignmentPrinterOutput.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/plaintext/PbiFilter_DataSetXmlFilters.txt' -> `./docs/examples/plaintext/PbiFilter_DataSetXmlFilters.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/ZmwQuery.txt' -> `./docs/examples/code/ZmwQuery.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiReferenceEndFilter.txt' -> `./docs/examples/code/PbiReferenceEndFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiNumDeletedBasesFilter.txt' -> `./docs/examples/code/PbiNumDeletedBasesFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiReferenceNameFilter.txt' -> `./docs/examples/code/PbiReferenceNameFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiBuilder_WithReader.txt' -> `./docs/examples/code/PbiBuilder_WithReader.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Compare_AlignedEnd.txt' -> `./docs/examples/code/Compare_AlignedEnd.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiLocalContextFilter.txt' -> `./docs/examples/code/PbiLocalContextFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiReferenceStartFilter.txt' -> `./docs/examples/code/PbiReferenceStartFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiBuilder_WithWriter.txt' -> `./docs/examples/code/PbiBuilder_WithWriter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Compare_FullName.txt' -> `./docs/examples/code/Compare_FullName.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Compare_MapQuality.txt' -> `./docs/examples/code/Compare_MapQuality.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Compare_ReadGroupNumericId.txt' -> `./docs/examples/code/Compare_ReadGroupNumericId.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Compare_NumMatches.txt' -> `./docs/examples/code/Compare_NumMatches.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Compare_QueryEnd.txt' -> `./docs/examples/code/Compare_QueryEnd.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiBarcodeForwardFilter.txt' -> `./docs/examples/code/PbiBarcodeForwardFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Compare_BarcodeReverse.txt' -> `./docs/examples/code/Compare_BarcodeReverse.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Compare_MovieName.txt' -> `./docs/examples/code/Compare_MovieName.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiAlignedEndFilter.txt' -> `./docs/examples/code/PbiAlignedEndFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/SubreadLengthQuery.txt' -> `./docs/examples/code/SubreadLengthQuery.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/EntireFileQuery_BamFilename.txt' -> `./docs/examples/code/EntireFileQuery_BamFilename.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiBarcodeQualityFilter.txt' -> `./docs/examples/code/PbiBarcodeQualityFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/ReadAccuracyQuery.txt' -> `./docs/examples/code/ReadAccuracyQuery.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Compare_ReadAccuracy.txt' -> `./docs/examples/code/Compare_ReadAccuracy.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Tag_AsciiCtor.txt' -> `./docs/examples/code/Tag_AsciiCtor.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiFilter_Interface.txt' -> `./docs/examples/code/PbiFilter_Interface.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Compare_TypeToName.txt' -> `./docs/examples/code/Compare_TypeToName.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiQueryLengthFilter.txt' -> `./docs/examples/code/PbiQueryLengthFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Compare_ReferenceStart.txt' -> `./docs/examples/code/Compare_ReferenceStart.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/BarcodeQuery.txt' -> `./docs/examples/code/BarcodeQuery.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Compare_Zmw.txt' -> `./docs/examples/code/Compare_Zmw.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/GenomicIntervalQuery.txt' -> `./docs/examples/code/GenomicIntervalQuery.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Compare_NumDeletedBases.txt' -> `./docs/examples/code/Compare_NumDeletedBases.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiQueryStartFilter.txt' -> `./docs/examples/code/PbiQueryStartFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Compare_BarcodeForward.txt' -> `./docs/examples/code/Compare_BarcodeForward.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiFilterQuery.txt' -> `./docs/examples/code/PbiFilterQuery.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Compare_ReadGroupId.txt' -> `./docs/examples/code/Compare_ReadGroupId.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiIdentityFilter.txt' -> `./docs/examples/code/PbiIdentityFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiNumMismatchesFilter.txt' -> `./docs/examples/code/PbiNumMismatchesFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Compare_NumInsertedBases.txt' -> `./docs/examples/code/Compare_NumInsertedBases.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiZmwFilter.txt' -> `./docs/examples/code/PbiZmwFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/EntireFileQuery_NonConst.txt' -> `./docs/examples/code/EntireFileQuery_NonConst.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Compare_ReferenceEnd.txt' -> `./docs/examples/code/Compare_ReferenceEnd.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiMapQualityFilter.txt' -> `./docs/examples/code/PbiMapQualityFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiBarcodesFilter.txt' -> `./docs/examples/code/PbiBarcodesFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/WhitelistedZmwReadStitcher.txt' -> `./docs/examples/code/WhitelistedZmwReadStitcher.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiFilter_Composition.txt' -> `./docs/examples/code/PbiFilter_Composition.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiNumInsertedBasesFilter.txt' -> `./docs/examples/code/PbiNumInsertedBasesFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiMovieNameFilter.txt' -> `./docs/examples/code/PbiMovieNameFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiBarcodeFilter.txt' -> `./docs/examples/code/PbiBarcodeFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiNumMatchesFilter.txt' -> `./docs/examples/code/PbiNumMatchesFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Compare_LocalContextFlag.txt' -> `./docs/examples/code/Compare_LocalContextFlag.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Compare_ReferenceId.txt' -> `./docs/examples/code/Compare_ReferenceId.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Compare_NumMismatches.txt' -> `./docs/examples/code/Compare_NumMismatches.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/EntireFileQuery.txt' -> `./docs/examples/code/EntireFileQuery.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiFilter_CustomFilter.txt' -> `./docs/examples/code/PbiFilter_CustomFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/GenomicIntervalQuery_Reuse.txt' -> `./docs/examples/code/GenomicIntervalQuery_Reuse.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiReadGroupFilter.txt' -> `./docs/examples/code/PbiReadGroupFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Compare_TypeFromOperator.txt' -> `./docs/examples/code/Compare_TypeFromOperator.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Compare.txt' -> `./docs/examples/code/Compare.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Compare_BarcodeQuality.txt' -> `./docs/examples/code/Compare_BarcodeQuality.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Compare_AlignedStrand.txt' -> `./docs/examples/code/Compare_AlignedStrand.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Compare_ReferenceName.txt' -> `./docs/examples/code/Compare_ReferenceName.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Compare_QueryStart.txt' -> `./docs/examples/code/Compare_QueryStart.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiReferenceIdFilter.txt' -> `./docs/examples/code/PbiReferenceIdFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiBarcodeReverseFilter.txt' -> `./docs/examples/code/PbiBarcodeReverseFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/Compare_AlignedStart.txt' -> `./docs/examples/code/Compare_AlignedStart.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiQueryNameFilter.txt' -> `./docs/examples/code/PbiQueryNameFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiAlignedStartFilter.txt' -> `./docs/examples/code/PbiAlignedStartFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiAlignedLengthFilter.txt' -> `./docs/examples/code/PbiAlignedLengthFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiReadAccuracyFilter.txt' -> `./docs/examples/code/PbiReadAccuracyFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/ZmwGroupQuery.txt' -> `./docs/examples/code/ZmwGroupQuery.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiAlignedStrandFilter.txt' -> `./docs/examples/code/PbiAlignedStrandFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/examples/code/PbiQueryEndFilter.txt' -> `./docs/examples/code/PbiQueryEndFilter.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/specs/pbbam_updated_release3_2.rst' -> `./docs/specs/pbbam_updated_release3_2.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/specs/pbbam.rst' -> `./docs/specs/pbbam.rst'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/docs/specs/pbbam_structure.png' -> `./docs/specs/pbbam_structure.png'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/QNameQuery.cpp' -> `./src/QNameQuery.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/SequenceInfo.cpp' -> `./src/SequenceInfo.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/GenomicInterval.cpp' -> `./src/GenomicInterval.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/MD5.cpp' -> `./src/MD5.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/FastaWriter.cpp' -> `./src/FastaWriter.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/FileUtils.cpp' -> `./src/FileUtils.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/Version.h' -> `./src/Version.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/MemoryUtils.cpp' -> `./src/MemoryUtils.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/ReadGroupInfo.cpp' -> `./src/ReadGroupInfo.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/Frames.cpp' -> `./src/Frames.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/PbiRawData.cpp' -> `./src/PbiRawData.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/WhitelistedZmwReadStitcher.cpp' -> `./src/WhitelistedZmwReadStitcher.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/CigarOperation.cpp' -> `./src/CigarOperation.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/BamFile.cpp' -> `./src/BamFile.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/Validator.cpp' -> `./src/Validator.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/MemoryUtils.h' -> `./src/MemoryUtils.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/DataSetElement.cpp' -> `./src/DataSetElement.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/XmlWriter.cpp' -> `./src/XmlWriter.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/EntireFileQuery.cpp' -> `./src/EntireFileQuery.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/FastaSequenceQuery.cpp' -> `./src/FastaSequenceQuery.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/BamRecordTags.h' -> `./src/BamRecordTags.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/FileProducer.cpp' -> `./src/FileProducer.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/BamRecord.cpp' -> `./src/BamRecord.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/meson.build' -> `./src/meson.build'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/IndexedFastaReader.cpp' -> `./src/IndexedFastaReader.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/ChemistryTable.cpp' -> `./src/ChemistryTable.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/BamFileMerger.cpp' -> `./src/BamFileMerger.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/SamTagCodec.cpp' -> `./src/SamTagCodec.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/Compare.cpp' -> `./src/Compare.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/PbiFile.cpp' -> `./src/PbiFile.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/FastqSequence.cpp' -> `./src/FastqSequence.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/PbiFilterTypes.cpp' -> `./src/PbiFilterTypes.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/PbiBuilder.cpp' -> `./src/PbiBuilder.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/XmlWriter.h' -> `./src/XmlWriter.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/FofnReader.h' -> `./src/FofnReader.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/VirtualRegion.cpp' -> `./src/VirtualRegion.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/QualityValue.cpp' -> `./src/QualityValue.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/GenomicIntervalQuery.cpp' -> `./src/GenomicIntervalQuery.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/BarcodeQuery.cpp' -> `./src/BarcodeQuery.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/AlignmentPrinter.cpp' -> `./src/AlignmentPrinter.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/RecordType.cpp' -> `./src/RecordType.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/VirtualRegionTypeMap.cpp' -> `./src/VirtualRegionTypeMap.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/PbiIndexedBamReader.cpp' -> `./src/PbiIndexedBamReader.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/ZmwGroupQuery.cpp' -> `./src/ZmwGroupQuery.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/FofnReader.cpp' -> `./src/FofnReader.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/Version.cpp' -> `./src/Version.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/FileUtils.h' -> `./src/FileUtils.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/TagCollection.cpp' -> `./src/TagCollection.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/Tag.cpp' -> `./src/Tag.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/SubreadLengthQuery.cpp' -> `./src/SubreadLengthQuery.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/BamRecordBuilder.cpp' -> `./src/BamRecordBuilder.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/BamRecordView.cpp' -> `./src/BamRecordView.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/VirtualZmwReader.h' -> `./src/VirtualZmwReader.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/PbiIndexIO.h' -> `./src/PbiIndexIO.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/DataSetIO.cpp' -> `./src/DataSetIO.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/PbiFilterQuery.cpp' -> `./src/PbiFilterQuery.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/ZmwTypeMap.cpp' -> `./src/ZmwTypeMap.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/DataSet.cpp' -> `./src/DataSet.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/ProgramInfo.cpp' -> `./src/ProgramInfo.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/Cigar.cpp' -> `./src/Cigar.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/ValidationErrors.cpp' -> `./src/ValidationErrors.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/BamRecordImpl.cpp' -> `./src/BamRecordImpl.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/PbiFilter.cpp' -> `./src/PbiFilter.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/BamRecordTags.cpp' -> `./src/BamRecordTags.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/IndexedBamWriter.cpp' -> `./src/IndexedBamWriter.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/PbbamInternalConfig.h' -> `./src/PbbamInternalConfig.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/FastqReader.cpp' -> `./src/FastqReader.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/Autovalidate.h' -> `./src/Autovalidate.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/FastaCache.cpp' -> `./src/FastaCache.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/Config.cpp' -> `./src/Config.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/FileProducer.h' -> `./src/FileProducer.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/VirtualZmwCompositeReader.cpp' -> `./src/VirtualZmwCompositeReader.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/BamHeader.cpp' -> `./src/BamHeader.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/DataSetTypes.cpp' -> `./src/DataSetTypes.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/BamTagCodec.cpp' -> `./src/BamTagCodec.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/VirtualZmwBamRecord.cpp' -> `./src/VirtualZmwBamRecord.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/VirtualStitching.h' -> `./src/VirtualStitching.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/DataSetUtils.h' -> `./src/DataSetUtils.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/XmlReader.cpp' -> `./src/XmlReader.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/BamWriter.cpp' -> `./src/BamWriter.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/ReadAccuracyQuery.cpp' -> `./src/ReadAccuracyQuery.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/Pulse2BaseCache.h' -> `./src/Pulse2BaseCache.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/FastaReader.cpp' -> `./src/FastaReader.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/ZmwQuery.cpp' -> `./src/ZmwQuery.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/EnumClassHash.h' -> `./src/EnumClassHash.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/FastaSequence.cpp' -> `./src/FastaSequence.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/BamReader.cpp' -> `./src/BamReader.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/XmlReader.h' -> `./src/XmlReader.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/DataSetBaseTypes.cpp' -> `./src/DataSetBaseTypes.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/BaiIndexedBamReader.cpp' -> `./src/BaiIndexedBamReader.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/Accuracy.cpp' -> `./src/Accuracy.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/PbiIndexIO.cpp' -> `./src/PbiIndexIO.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/TimeUtils.h' -> `./src/TimeUtils.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/VirtualZmwReader.cpp' -> `./src/VirtualZmwReader.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/CompositeFastaReader.cpp' -> `./src/CompositeFastaReader.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/FastqWriter.cpp' -> `./src/FastqWriter.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/IRecordWriter.cpp' -> `./src/IRecordWriter.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/StringUtilities.cpp' -> `./src/StringUtilities.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/ValidationException.cpp' -> `./src/ValidationException.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/ValidationErrors.h' -> `./src/ValidationErrors.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/ZmwReadStitcher.cpp' -> `./src/ZmwReadStitcher.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/ChemistryTable.h' -> `./src/ChemistryTable.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/DataSetXsd.cpp' -> `./src/DataSetXsd.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/QualityValues.cpp' -> `./src/QualityValues.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/DataSetIO.h' -> `./src/DataSetIO.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/VirtualZmwCompositeReader.h' -> `./src/VirtualZmwCompositeReader.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/SequenceUtils.h' -> `./src/SequenceUtils.h'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/SamWriter.cpp' -> `./src/SamWriter.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/pugixml/pugixml.cpp' -> `./src/pugixml/pugixml.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/pugixml/pugixml.hpp' -> `./src/pugixml/pugixml.hpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/pugixml/pugiconfig.hpp' -> `./src/pugixml/pugiconfig.hpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/vcf/VcfFormat.cpp' -> `./src/vcf/VcfFormat.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/vcf/VcfWriter.cpp' -> `./src/vcf/VcfWriter.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/vcf/VcfFile.cpp' -> `./src/vcf/VcfFile.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/vcf/VcfSort.cpp' -> `./src/vcf/VcfSort.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/vcf/VcfVariant.cpp' -> `./src/vcf/VcfVariant.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/vcf/VcfReader.cpp' -> `./src/vcf/VcfReader.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/vcf/VcfQuery.cpp' -> `./src/vcf/VcfQuery.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/vcf/VcfHeaderTypes.cpp' -> `./src/vcf/VcfHeaderTypes.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/src/vcf/VcfHeader.cpp' -> `./src/vcf/VcfHeader.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/meson.build' -> `./tests/meson.build'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/scripts/cram.py' -> `./tests/scripts/cram.py'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/scripts/generate_data.py' -> `./tests/scripts/generate_data.py'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/scripts/cram/_encoding.py' -> `./tests/scripts/cram/_encoding.py'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/scripts/cram/_xunit.py' -> `./tests/scripts/cram/_xunit.py'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/scripts/cram/_process.py' -> `./tests/scripts/cram/_process.py'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/scripts/cram/_cli.py' -> `./tests/scripts/cram/_cli.py'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/scripts/cram/_test.py' -> `./tests/scripts/cram/_test.py'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/scripts/cram/__main__.py' -> `./tests/scripts/cram/__main__.py'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/scripts/cram/_run.py' -> `./tests/scripts/cram/_run.py'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/scripts/cram/__init__.py' -> `./tests/scripts/cram/__init__.py'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/scripts/cram/_diff.py' -> `./tests/scripts/cram/_diff.py'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/scripts/cram/_main.py' -> `./tests/scripts/cram/_main.py'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_VcfFile.cpp' -> `./tests/src/test_VcfFile.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_Intervals.cpp' -> `./tests/src/test_Intervals.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_BamRecordBuilder.cpp' -> `./tests/src/test_BamRecordBuilder.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_DataSetIO.cpp' -> `./tests/src/test_DataSetIO.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_AlignmentPrinter.cpp' -> `./tests/src/test_AlignmentPrinter.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_Frames.cpp' -> `./tests/src/test_Frames.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_GenomicIntervalQuery.cpp' -> `./tests/src/test_GenomicIntervalQuery.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_DataSetCore.cpp' -> `./tests/src/test_DataSetCore.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_BamRecord.cpp' -> `./tests/src/test_BamRecord.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_SubreadLengthQuery.cpp' -> `./tests/src/test_SubreadLengthQuery.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_Fasta.cpp' -> `./tests/src/test_Fasta.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_PacBioIndex.cpp' -> `./tests/src/test_PacBioIndex.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_SamWriter.cpp' -> `./tests/src/test_SamWriter.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_BarcodeQuery.cpp' -> `./tests/src/test_BarcodeQuery.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_Compare.cpp' -> `./tests/src/test_Compare.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/meson.build' -> `./tests/src/meson.build'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_EndToEnd.cpp' -> `./tests/src/test_EndToEnd.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_QualityValues.cpp' -> `./tests/src/test_QualityValues.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_VcfReader.cpp' -> `./tests/src/test_VcfReader.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_WhitelistedZmwReadStitcher.cpp' -> `./tests/src/test_WhitelistedZmwReadStitcher.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_DataSetQuery.cpp' -> `./tests/src/test_DataSetQuery.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_BamRecordImplCore.cpp' -> `./tests/src/test_BamRecordImplCore.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_ReadAccuracyQuery.cpp' -> `./tests/src/test_ReadAccuracyQuery.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_ZmwQuery.cpp' -> `./tests/src/test_ZmwQuery.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_BamRecordMapping.cpp' -> `./tests/src/test_BamRecordMapping.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_IndexedBamWriter.cpp' -> `./tests/src/test_IndexedBamWriter.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/PbbamTestData.h.in' -> `./tests/src/PbbamTestData.h.in'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_GenomicIntervals.cpp' -> `./tests/src/test_GenomicIntervals.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_Accuracy.cpp' -> `./tests/src/test_Accuracy.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_ReadGroupInfo.cpp' -> `./tests/src/test_ReadGroupInfo.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_PbiFilter.cpp' -> `./tests/src/test_PbiFilter.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_VcfQuery.cpp' -> `./tests/src/test_VcfQuery.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_ZmwReadStitcher.cpp' -> `./tests/src/test_ZmwReadStitcher.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_VcfSort.cpp' -> `./tests/src/test_VcfSort.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_StringUtils.cpp' -> `./tests/src/test_StringUtils.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_EntireFileQuery.cpp' -> `./tests/src/test_EntireFileQuery.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_Fastq.cpp' -> `./tests/src/test_Fastq.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_VcfVariant.cpp' -> `./tests/src/test_VcfVariant.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_PbiFilterQuery.cpp' -> `./tests/src/test_PbiFilterQuery.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_BamRecordClipping.cpp' -> `./tests/src/test_BamRecordClipping.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_SequenceUtils.cpp' -> `./tests/src/test_SequenceUtils.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_VcfHeader.cpp' -> `./tests/src/test_VcfHeader.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_DataSetXsd.cpp' -> `./tests/src/test_DataSetXsd.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_Validator.cpp' -> `./tests/src/test_Validator.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_BamHeader.cpp' -> `./tests/src/test_BamHeader.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_BamRecordImplVariableData.cpp' -> `./tests/src/test_BamRecordImplVariableData.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_BamFile.cpp' -> `./tests/src/test_BamFile.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_BamRecordImplTags.cpp' -> `./tests/src/test_BamRecordImplTags.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_QNameQuery.cpp' -> `./tests/src/test_QNameQuery.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_VcfFormat.cpp' -> `./tests/src/test_VcfFormat.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_BamWriter.cpp' -> `./tests/src/test_BamWriter.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_IndexedFastaReader.cpp' -> `./tests/src/test_IndexedFastaReader.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_Cigar.cpp' -> `./tests/src/test_Cigar.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_VcfWriter.cpp' -> `./tests/src/test_VcfWriter.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_FileUtils.cpp' -> `./tests/src/test_FileUtils.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_LongCigar.cpp' -> `./tests/src/test_LongCigar.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_TimeUtils.cpp' -> `./tests/src/test_TimeUtils.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_Tags.cpp' -> `./tests/src/test_Tags.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_Version.cpp' -> `./tests/src/test_Version.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/test_Pulse2BaseCache.cpp' -> `./tests/src/test_Pulse2BaseCache.cpp'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/cram/pbindexdump_cpp.t.in' -> `./tests/src/cram/pbindexdump_cpp.t.in'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/cram/pbmerge_aligned_ordering.t.in' -> `./tests/src/cram/pbmerge_aligned_ordering.t.in'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/cram/pbmerge_dataset.t.in' -> `./tests/src/cram/pbmerge_dataset.t.in'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/cram/pbbamify.t.in' -> `./tests/src/cram/pbbamify.t.in'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/cram/pbmerge_pacbio_ordering.t.in' -> `./tests/src/cram/pbmerge_pacbio_ordering.t.in'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/cram/pbindexdump_json.t.in' -> `./tests/src/cram/pbindexdump_json.t.in'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/cram/bam2sam.t.in' -> `./tests/src/cram/bam2sam.t.in'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/cram/pbmerge_mixed_ordering.t.in' -> `./tests/src/cram/pbmerge_mixed_ordering.t.in'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/src/cram/pbmerge_fofn.t.in' -> `./tests/src/cram/pbmerge_fofn.t.in'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/lambdaNEB.fa' -> `./tests/data/lambdaNEB.fa'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/aligned.bam.bai' -> `./tests/data/aligned.bam.bai'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/unmap2.bam' -> `./tests/data/unmap2.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/aligned2.bam' -> `./tests/data/aligned2.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/aligned.sam' -> `./tests/data/aligned.sam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/long-cigar-1.7.bam' -> `./tests/data/long-cigar-1.7.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/clip_to_query.bam' -> `./tests/data/clip_to_query.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/aligned2.bam.pbi' -> `./tests/data/aligned2.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/phi29.bam.pbi' -> `./tests/data/phi29.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/unmap2.bam.bai' -> `./tests/data/unmap2.bam.bai'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/merge.fofn' -> `./tests/data/merge.fofn'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/transcriptset.xml' -> `./tests/data/transcriptset.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/aligned2.bam.bai' -> `./tests/data/aligned2.bam.bai'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/barcoded_read_groups.bam.pbi' -> `./tests/data/barcoded_read_groups.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/transcript.subreads.bam' -> `./tests/data/transcript.subreads.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/chemistry.xml' -> `./tests/data/chemistry.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/refskip.bam' -> `./tests/data/refskip.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/unmap1.bam' -> `./tests/data/unmap1.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/empty.bam.pbi' -> `./tests/data/empty.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/transcript.subreads.bam.pbi' -> `./tests/data/transcript.subreads.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/segfault.bam' -> `./tests/data/segfault.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/lambdaNEB.fa.fai' -> `./tests/data/lambdaNEB.fa.fai'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/long_reads.bam' -> `./tests/data/long_reads.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/softclip_deletions.bam' -> `./tests/data/softclip_deletions.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/referenceset.xml' -> `./tests/data/referenceset.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/aligned.bam.pbi' -> `./tests/data/aligned.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/barcoded_read_groups.bam' -> `./tests/data/barcoded_read_groups.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/unmap1.bam.bai' -> `./tests/data/unmap1.bam.bai'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/chimera_minimal.fasta' -> `./tests/data/chimera_minimal.fasta'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/aligned.bam' -> `./tests/data/aligned.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/phi29.bam' -> `./tests/data/phi29.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/empty.bam' -> `./tests/data/empty.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/dataset/lambda_contigs.xml' -> `./tests/data/dataset/lambda_contigs.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/dataset/ali4.xml' -> `./tests/data/dataset/ali4.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/dataset/reference.dataset.xml' -> `./tests/data/dataset/reference.dataset.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/dataset/bam_mapping.bam.pbi' -> `./tests/data/dataset/bam_mapping.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/dataset/bam_mapping.bam' -> `./tests/data/dataset/bam_mapping.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/dataset/bam_mapping_1.bam.pbi' -> `./tests/data/dataset/bam_mapping_1.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/dataset/pbalchemy10kbp.xml' -> `./tests/data/dataset/pbalchemy10kbp.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/dataset/bam_mapping_2.bam' -> `./tests/data/dataset/bam_mapping_2.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/dataset/subread_dataset2.xml' -> `./tests/data/dataset/subread_dataset2.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/dataset/bam_mapping_new.bam' -> `./tests/data/dataset/bam_mapping_new.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/dataset/ali3.xml' -> `./tests/data/dataset/ali3.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/dataset/transformed_rs_subread_dataset.xml' -> `./tests/data/dataset/transformed_rs_subread_dataset.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/dataset/ali2.xml' -> `./tests/data/dataset/ali2.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/dataset/subread_dataset3.xml' -> `./tests/data/dataset/subread_dataset3.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/dataset/barcode.dataset.xml' -> `./tests/data/dataset/barcode.dataset.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/dataset/ccsread.dataset.xml' -> `./tests/data/dataset/ccsread.dataset.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/dataset/ali1.xml' -> `./tests/data/dataset/ali1.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/dataset/malformed.xml' -> `./tests/data/dataset/malformed.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/dataset/bam_mapping_new.bam.pbi' -> `./tests/data/dataset/bam_mapping_new.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/dataset/bam_mapping_2.bam.pbi' -> `./tests/data/dataset/bam_mapping_2.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/dataset/bam_mapping_staggered.xml' -> `./tests/data/dataset/bam_mapping_staggered.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/dataset/bam_mapping_1.bam' -> `./tests/data/dataset/bam_mapping_1.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/dataset/subread_dataset1.xml' -> `./tests/data/dataset/subread_dataset1.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/internal.polymerase.bam' -> `./tests/data/polymerase/internal.polymerase.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/consolidate.subread.dataset.xml' -> `./tests/data/polymerase/consolidate.subread.dataset.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/internal.subreads.bam' -> `./tests/data/polymerase/internal.subreads.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/internal.polymerase.bam.pbi' -> `./tests/data/polymerase/internal.polymerase.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/multiple_resources.subread.dataset.xml' -> `./tests/data/polymerase/multiple_resources.subread.dataset.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/production.scraps.bam' -> `./tests/data/polymerase/production.scraps.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/production.scraps.bam.pbi' -> `./tests/data/polymerase/production.scraps.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/qname_whitelist.txt' -> `./tests/data/polymerase/qname_whitelist.txt'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/production.polymerase.bam' -> `./tests/data/polymerase/production.polymerase.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/scrapless.scraps.bam.pbi' -> `./tests/data/polymerase/scrapless.scraps.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/production_hq.hqregion.bam' -> `./tests/data/polymerase/production_hq.hqregion.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/filtered_resources.subread.dataset.xml' -> `./tests/data/polymerase/filtered_resources.subread.dataset.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/production_hq.scraps.bam.pbi' -> `./tests/data/polymerase/production_hq.scraps.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/internal.scraps.bam.pbi' -> `./tests/data/polymerase/internal.scraps.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/production.subreads.bam.pbi' -> `./tests/data/polymerase/production.subreads.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/scrapless.subreads.bam.pbi' -> `./tests/data/polymerase/scrapless.subreads.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/internal.lqregions.bam.pbi' -> `./tests/data/polymerase/internal.lqregions.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/production.subreads.bam' -> `./tests/data/polymerase/production.subreads.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/scrapless.subreads.bam' -> `./tests/data/polymerase/scrapless.subreads.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/internal.hqregions.bam.pbi' -> `./tests/data/polymerase/internal.hqregions.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/production_hq.scraps.bam' -> `./tests/data/polymerase/production_hq.scraps.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/internal.hqregions.bam' -> `./tests/data/polymerase/internal.hqregions.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/production_hq.hqregion.bam.pbi' -> `./tests/data/polymerase/production_hq.hqregion.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/qnameFiltered.subreads.dataset.xml' -> `./tests/data/polymerase/qnameFiltered.subreads.dataset.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/scrapless.scraps.bam' -> `./tests/data/polymerase/scrapless.scraps.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/internal.scraps.bam' -> `./tests/data/polymerase/internal.scraps.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/internal.lqregions.bam' -> `./tests/data/polymerase/internal.lqregions.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/polymerase/internal.subreads.bam.pbi' -> `./tests/data/polymerase/internal.subreads.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/stitching/test_qstart.subreads.bam.pbi' -> `./tests/data/stitching/test_qstart.subreads.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/stitching/test_qstart.subreads.bam' -> `./tests/data/stitching/test_qstart.subreads.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/stitching/test_qstart.scraps.bam.pbi' -> `./tests/data/stitching/test_qstart.scraps.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/stitching/test_qstart.scraps.bam' -> `./tests/data/stitching/test_qstart.scraps.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/relative/relative.fofn' -> `./tests/data/relative/relative.fofn'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/relative/relative2.fofn' -> `./tests/data/relative/relative2.fofn'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/relative/relative.xml' -> `./tests/data/relative/relative.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/relative/b/test1.bam' -> `./tests/data/relative/b/test1.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/relative/b/test2.bam' -> `./tests/data/relative/b/test2.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/relative/a/test.bam' -> `./tests/data/relative/a/test.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/pbbamify/synthetic_movie_3.subreads.bam.pbi' -> `./tests/data/pbbamify/synthetic_movie_3.subreads.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/pbbamify/synthetic_movie_3.subreads.bam' -> `./tests/data/pbbamify/synthetic_movie_3.subreads.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/pbbamify/synthetic_movie_3.subreads.bam.bai' -> `./tests/data/pbbamify/synthetic_movie_3.subreads.bam.bai'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/pbbamify/synthetic_movie_all.subreadset.xml.in' -> `./tests/data/pbbamify/synthetic_movie_all.subreadset.xml.in'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/pbbamify/synthetic-ref-1.fa.fai' -> `./tests/data/pbbamify/synthetic-ref-1.fa.fai'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/pbbamify/input-aligned-1.bam' -> `./tests/data/pbbamify/input-aligned-1.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/pbbamify/synthetic_movie_1.subreads.bam' -> `./tests/data/pbbamify/synthetic_movie_1.subreads.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/pbbamify/input-aligned-2.bam' -> `./tests/data/pbbamify/input-aligned-2.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/pbbamify/input-aligned-all.bam' -> `./tests/data/pbbamify/input-aligned-all.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/pbbamify/synthetic_movie_2.subreads.bam.bai' -> `./tests/data/pbbamify/synthetic_movie_2.subreads.bam.bai'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/pbbamify/synthetic_movie_1.subreads.bam.pbi' -> `./tests/data/pbbamify/synthetic_movie_1.subreads.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/pbbamify/synthetic-ref-1.fa' -> `./tests/data/pbbamify/synthetic-ref-1.fa'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/pbbamify/synthetic_movie_1.subreads.bam.bai' -> `./tests/data/pbbamify/synthetic_movie_1.subreads.bam.bai'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/pbbamify/input-aligned-3.bam' -> `./tests/data/pbbamify/input-aligned-3.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/pbbamify/synthetic_movie_2.subreads.bam' -> `./tests/data/pbbamify/synthetic_movie_2.subreads.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/pbbamify/synthetic_movie_2.subreads.bam.pbi' -> `./tests/data/pbbamify/synthetic_movie_2.subreads.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/vcf/unsorted.vcf' -> `./tests/data/vcf/unsorted.vcf'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/vcf/structural_variants.vcf' -> `./tests/data/vcf/structural_variants.vcf'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/chunking/chunking.subreadset.xml' -> `./tests/data/chunking/chunking.subreadset.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.2.subreads.bam.pbi' -> `./tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.2.subreads.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.2.subreads.bam' -> `./tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.2.subreads.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.1.subreads.bam' -> `./tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.1.subreads.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.3.subreads.bam.pbi' -> `./tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.3.subreads.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.3.subreads.bam' -> `./tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.3.subreads.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.1.subreads.bam.pbi' -> `./tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.1.subreads.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/test_group_query/test1.bam' -> `./tests/data/test_group_query/test1.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/test_group_query/group.fofn.in' -> `./tests/data/test_group_query/group.fofn.in'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/test_group_query/test2.bam' -> `./tests/data/test_group_query/test2.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/test_group_query/test2.bam.pbi' -> `./tests/data/test_group_query/test2.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/test_group_query/test3.bam' -> `./tests/data/test_group_query/test3.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/test_GenomicIntervals/whole_contig.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/whole_contig.alignmentset.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/test_GenomicIntervals/disjoint_intervals.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/disjoint_intervals.alignmentset.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/test_GenomicIntervals/two_contigs.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/two_contigs.alignmentset.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/test_GenomicIntervals/adjacent_intervals.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/adjacent_intervals.alignmentset.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/test_GenomicIntervals/single_interval_end_gte.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/single_interval_end_gte.alignmentset.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/test_GenomicIntervals/test_contigs.fasta' -> `./tests/data/test_GenomicIntervals/test_contigs.fasta'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/test_GenomicIntervals/contig_name_only.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/contig_name_only.alignmentset.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/test_GenomicIntervals/empty.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/empty.alignmentset.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/test_GenomicIntervals/invalid_rname_operator.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/invalid_rname_operator.alignmentset.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/test_GenomicIntervals/test_contigs.bam.pbi' -> `./tests/data/test_GenomicIntervals/test_contigs.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/test_GenomicIntervals/out_of_range.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/out_of_range.alignmentset.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/test_GenomicIntervals/no_filter.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/no_filter.alignmentset.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/test_GenomicIntervals/single_interval.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/single_interval.alignmentset.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/test_GenomicIntervals/invalid_tstart_operator.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/invalid_tstart_operator.alignmentset.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/test_GenomicIntervals/invalid_missing_rname.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/invalid_missing_rname.alignmentset.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/test_GenomicIntervals/single_interval_start_lte.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/single_interval_start_lte.alignmentset.xml'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/test_GenomicIntervals/test_contigs.bam' -> `./tests/data/test_GenomicIntervals/test_contigs.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/test_windows_formatted_fasta/windows.fastq' -> `./tests/data/test_windows_formatted_fasta/windows.fastq'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/test_windows_formatted_fasta/windows.fasta' -> `./tests/data/test_windows_formatted_fasta/windows.fasta'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/group/test1.bam' -> `./tests/data/group/test1.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/group/group.fofn.in' -> `./tests/data/group/group.fofn.in'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/group/test2.bam' -> `./tests/data/group/test2.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/group/test2.bam.pbi' -> `./tests/data/group/test2.bam.pbi'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/tests/data/group/test3.bam' -> `./tests/data/group/test3.bam'
`/gnu/store/n889xrd3mgadbg2wysrf151yf3ly3iis-pbbam-0.23.0-checkout/subprojects/gtest.wrap' -> `./subprojects/gtest.wrap'
phase `unpack' succeeded after 0.6 seconds
starting phase `find-googletest'
phase `find-googletest' succeeded after 0.0 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
patch-shebang: ./bamboo_build.sh: changing `/usr/bin/env bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash'
patch-shebang: ./scripts/ci/artifact.sh: changing `/usr/bin/env bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash'
patch-shebang: ./scripts/ci/build.sh: changing `/usr/bin/env bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash'
patch-shebang: ./scripts/ci/install.sh: changing `/usr/bin/env bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash'
patch-shebang: ./scripts/ci/setup.sh: changing `/usr/bin/env bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash'
patch-shebang: ./scripts/ci/test.sh: changing `/usr/bin/env bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash'
patch-shebang: ./tests/scripts/cram.py: changing `/usr/bin/env python' to `/gnu/store/bvd09gb8ka642jzgxd2lpqlpdp160gn0-python-wrapper-3.8.2/bin/python'
patch-shebang: ./tests/scripts/generate_data.py: changing `/usr/bin/env python' to `/gnu/store/bvd09gb8ka642jzgxd2lpqlpdp160gn0-python-wrapper-3.8.2/bin/python'
patch-shebang: ./tools/check-formatting: changing `/usr/bin/env bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash'
patch-shebang: ./tools/format-all: changing `/usr/bin/env bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash'
patch-shebang: ./tools/git-clang-format: changing `/usr/bin/env python' to `/gnu/store/bvd09gb8ka642jzgxd2lpqlpdp160gn0-python-wrapper-3.8.2/bin/python'
phase `patch-source-shebangs' succeeded after 0.1 seconds
starting phase `configure'
The Meson build system
Version: 0.53.2
Source dir: /tmp/guix-build-pbbam-0.23.0.drv-0/source
Build dir: /tmp/guix-build-pbbam-0.23.0.drv-0/build
Build type: native build
Project name: PacBioBAM
Project version: 0.23.0
C++ compiler for the host machine: c++ (gcc 7.5.0 "c++ (GCC) 7.5.0")
C++ linker for the host machine: c++ ld.bfd 2.34
Host machine cpu family: x86_64
Host machine cpu: x86_64
Compiler for C++ supports arguments -Wduplicated-cond: YES 
Compiler for C++ supports arguments -Wduplicated-branches: YES 
Compiler for C++ supports arguments -Wlogical-op: YES 
Compiler for C++ supports arguments -Wrestrict: YES 
Compiler for C++ supports arguments -Wnull-dereference: YES 
Compiler for C++ supports arguments -Wuseless-cast: YES 
Compiler for C++ supports arguments -Wdouble-promotion: YES 
Compiler for C++ supports arguments -Wshadow: YES 
Compiler for C++ supports arguments -Wformat=1: YES 
Run-time dependency threads found: YES
Run-time dependency Boost found: YES 1.72
Found pkg-config: /gnu/store/krpyb0zi700dcrg9cc8932w4v0qivdg9-pkg-config-0.29.2/bin/pkg-config (0.29.2)
Run-time dependency zlib found: YES 1.2.11
Run-time dependency htslib found: YES 1.11
Program python found: YES (/gnu/store/bvd09gb8ka642jzgxd2lpqlpdp160gn0-python-wrapper-3.8.2/bin/python)
Configuring Bam2SamVersion.h using configuration
Configuring PbIndexVersion.h using configuration
Configuring PbIndexDumpVersion.h using configuration
Configuring PbMergeVersion.h using configuration
Configuring PbBamifyVersion.h using configuration
Build targets in project: 6

Option buildtype is: debugoptimized [default: release]
Found ninja-1.10.0 at /gnu/store/57rl5wpbcssagzqz56gqi34dhpznl0hw-ninja-1.10.0/bin/ninja
phase `configure' succeeded after 1.8 seconds
starting phase `patch-generated-file-shebangs'
phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `build'
[1/119] Compiling C++ object 'src/25a6634@@pbbam@sha/Accuracy.cpp.o'.
[2/119] Compiling C++ object 'src/25a6634@@pbbam@sha/BaiIndexedBamReader.cpp.o'.
[3/119] Compiling C++ object 'src/25a6634@@pbbam@sha/BamFile.cpp.o'.
[4/119] Compiling C++ object 'src/25a6634@@pbbam@sha/AlignmentPrinter.cpp.o'.
[5/119] Compiling C++ object 'src/25a6634@@pbbam@sha/BamRecordBuilder.cpp.o'.
[6/119] Compiling C++ object 'src/25a6634@@pbbam@sha/BamReader.cpp.o'.
[7/119] Compiling C++ object 'src/25a6634@@pbbam@sha/BamRecordImpl.cpp.o'.
../source/src/BamRecordImpl.cpp: In member function ‘PacBio::BAM::BamRecordImpl& PacBio::BAM::BamRecordImpl::operator=(const PacBio::BAM::BamRecordImpl&)’:
../source/src/BamRecordImpl.cpp:97:18: warning: ignoring return value of ‘bam1_t* bam_copy1(bam1_t*, const bam1_t*)’, declared with attribute warn_unused_result [-Wunused-result]
         bam_copy1(d_.get(), other.d_.get());
         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
../source/src/BamRecordImpl.cpp: In static member function ‘static PacBio::BAM::BamRecordImpl PacBio::BAM::BamRecordImpl::FromRawData(const std::shared_ptr<bam1_t>&)’:
../source/src/BamRecordImpl.cpp:255:14: warning: ignoring return value of ‘bam1_t* bam_copy1(bam1_t*, const bam1_t*)’, declared with attribute warn_unused_result [-Wunused-result]
     bam_copy1(result.d_.get(), rawData.get());
     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[8/119] Compiling C++ object 'src/25a6634@@pbbam@sha/BamHeader.cpp.o'.
[9/119] Compiling C++ object 'src/25a6634@@pbbam@sha/BamFileMerger.cpp.o'.
[10/119] Compiling C++ object 'src/25a6634@@pbbam@sha/BamRecordView.cpp.o'.
[11/119] Compiling C++ object 'src/25a6634@@pbbam@sha/CigarOperation.cpp.o'.
[12/119] Compiling C++ object 'src/25a6634@@pbbam@sha/BamWriter.cpp.o'.
[13/119] Compiling C++ object 'src/25a6634@@pbbam@sha/Cigar.cpp.o'.
[14/119] Compiling C++ object 'src/25a6634@@pbbam@sha/BamRecordTags.cpp.o'.
[15/119] Compiling C++ object 'src/25a6634@@pbbam@sha/Config.cpp.o'.
[16/119] Compiling C++ object 'src/25a6634@@pbbam@sha/ChemistryTable.cpp.o'.
[17/119] Compiling C++ object 'src/25a6634@@pbbam@sha/BamRecord.cpp.o'.
[18/119] Compiling C++ object 'src/25a6634@@pbbam@sha/BamTagCodec.cpp.o'.
[19/119] Compiling C++ object 'src/25a6634@@pbbam@sha/CompositeFastaReader.cpp.o'.
[20/119] Compiling C++ object 'src/25a6634@@pbbam@sha/Compare.cpp.o'.
[21/119] Compiling C++ object 'src/25a6634@@pbbam@sha/DataSetXsd.cpp.o'.
[22/119] Compiling C++ object 'src/25a6634@@pbbam@sha/DataSetIO.cpp.o'.
[23/119] Compiling C++ object 'src/25a6634@@pbbam@sha/FastaCache.cpp.o'.
[24/119] Compiling C++ object 'src/25a6634@@pbbam@sha/DataSetElement.cpp.o'.
[25/119] Compiling C++ object 'src/25a6634@@pbbam@sha/BarcodeQuery.cpp.o'.
[26/119] Compiling C++ object 'src/25a6634@@pbbam@sha/FastaSequence.cpp.o'.
[27/119] Compiling C++ object 'src/25a6634@@pbbam@sha/FastaReader.cpp.o'.
[28/119] Compiling C++ object 'src/25a6634@@pbbam@sha/EntireFileQuery.cpp.o'.
[29/119] Compiling C++ object 'src/25a6634@@pbbam@sha/FastqSequence.cpp.o'.
[30/119] Compiling C++ object 'src/25a6634@@pbbam@sha/FileProducer.cpp.o'.
[31/119] Compiling C++ object 'src/25a6634@@pbbam@sha/FastaSequenceQuery.cpp.o'.
[32/119] Compiling C++ object 'src/25a6634@@pbbam@sha/FastqReader.cpp.o'.
[33/119] Compiling C++ object 'src/25a6634@@pbbam@sha/DataSetBaseTypes.cpp.o'.
[34/119] Compiling C++ object 'src/25a6634@@pbbam@sha/FastaWriter.cpp.o'.
[35/119] Compiling C++ object 'src/25a6634@@pbbam@sha/FileUtils.cpp.o'.
[36/119] Compiling C++ object 'src/25a6634@@pbbam@sha/FastqWriter.cpp.o'.
[37/119] Compiling C++ object 'src/25a6634@@pbbam@sha/DataSet.cpp.o'.
[38/119] Compiling C++ object 'src/25a6634@@pbbam@sha/Frames.cpp.o'.
[39/119] Compiling C++ object 'src/25a6634@@pbbam@sha/IRecordWriter.cpp.o'.
[40/119] Compiling C++ object 'src/25a6634@@pbbam@sha/FofnReader.cpp.o'.
[41/119] Compiling C++ object 'src/25a6634@@pbbam@sha/MD5.cpp.o'.
[42/119] Compiling C++ object 'src/25a6634@@pbbam@sha/GenomicInterval.cpp.o'.
[43/119] Compiling C++ object 'src/25a6634@@pbbam@sha/IndexedFastaReader.cpp.o'.
[44/119] Compiling C++ object 'src/25a6634@@pbbam@sha/DataSetTypes.cpp.o'.
[45/119] Compiling C++ object 'src/25a6634@@pbbam@sha/MemoryUtils.cpp.o'.
../source/src/MemoryUtils.cpp: In static member function ‘static std::shared_ptr<sam_hdr_t> PacBio::BAM::BamHeaderMemory::MakeRawHeader(const PacBio::BAM::BamHeader&)’:
../source/src/MemoryUtils.cpp:32:14: warning: ‘sam_hdr_t::cigar_tab’ is deprecated: Use bam_cigar_table[] instead [-Wdeprecated-declarations]
     rawData->cigar_tab = nullptr;
              ^~~~~~~~~
In file included from /gnu/store/02x2wdjwnp8va1ww9hm0vx118j7w7nyv-htslib-1.11/include/htslib/bgzf.h:36:0,
                 from ../source/src/MemoryUtils.h:9,
                 from ../source/src/MemoryUtils.cpp:5:
/gnu/store/02x2wdjwnp8va1ww9hm0vx118j7w7nyv-htslib-1.11/include/htslib/sam.h:75:29: note: declared here
     const int8_t *cigar_tab HTS_DEPRECATED("Use bam_cigar_table[] instead");
                             ^
../source/src/MemoryUtils.cpp:32:14: warning: ‘sam_hdr_t::cigar_tab’ is deprecated: Use bam_cigar_table[] instead [-Wdeprecated-declarations]
     rawData->cigar_tab = nullptr;
              ^~~~~~~~~
In file included from /gnu/store/02x2wdjwnp8va1ww9hm0vx118j7w7nyv-htslib-1.11/include/htslib/bgzf.h:36:0,
                 from ../source/src/MemoryUtils.h:9,
                 from ../source/src/MemoryUtils.cpp:5:
/gnu/store/02x2wdjwnp8va1ww9hm0vx118j7w7nyv-htslib-1.11/include/htslib/sam.h:75:29: note: declared here
     const int8_t *cigar_tab HTS_DEPRECATED("Use bam_cigar_table[] instead");
                             ^
../source/src/MemoryUtils.cpp:32:14: warning: ‘sam_hdr_t::cigar_tab’ is deprecated: Use bam_cigar_table[] instead [-Wdeprecated-declarations]
     rawData->cigar_tab = nullptr;
              ^~~~~~~~~
In file included from /gnu/store/02x2wdjwnp8va1ww9hm0vx118j7w7nyv-htslib-1.11/include/htslib/bgzf.h:36:0,
                 from ../source/src/MemoryUtils.h:9,
                 from ../source/src/MemoryUtils.cpp:5:
/gnu/store/02x2wdjwnp8va1ww9hm0vx118j7w7nyv-htslib-1.11/include/htslib/sam.h:75:29: note: declared here
     const int8_t *cigar_tab HTS_DEPRECATED("Use bam_cigar_table[] instead");
                             ^
[46/119] Compiling C++ object 'src/25a6634@@pbbam@sha/GenomicIntervalQuery.cpp.o'.
[47/119] Compiling C++ object 'src/25a6634@@pbbam@sha/ZmwQuery.cpp.o'.
[48/119] Compiling C++ object 'src/25a6634@@pbbam@sha/PbiFile.cpp.o'.
[49/119] Compiling C++ object 'src/25a6634@@pbbam@sha/IndexedBamWriter.cpp.o'.
[50/119] Compiling C++ object 'src/25a6634@@pbbam@sha/PbiBuilder.cpp.o'.
[51/119] Compiling C++ object 'src/25a6634@@pbbam@sha/PbiFilterQuery.cpp.o'.
[52/119] Compiling C++ object 'src/25a6634@@pbbam@sha/ProgramInfo.cpp.o'.
[53/119] Compiling C++ object 'src/25a6634@@pbbam@sha/QualityValue.cpp.o'.
[54/119] Compiling C++ object 'src/25a6634@@pbbam@sha/PbiIndexedBamReader.cpp.o'.
[55/119] Compiling C++ object 'src/25a6634@@pbbam@sha/QualityValues.cpp.o'.
[56/119] Compiling C++ object 'src/25a6634@@pbbam@sha/PbiRawData.cpp.o'.
[57/119] Compiling C++ object 'src/25a6634@@pbbam@sha/RecordType.cpp.o'.
[58/119] Compiling C++ object 'src/25a6634@@pbbam@sha/PbiFilterTypes.cpp.o'.
[59/119] Compiling C++ object 'src/25a6634@@pbbam@sha/PbiIndexIO.cpp.o'.
[60/119] Compiling C++ object 'src/25a6634@@pbbam@sha/QNameQuery.cpp.o'.
[61/119] Compiling C++ object 'src/25a6634@@pbbam@sha/SamWriter.cpp.o'.
[62/119] Compiling C++ object 'src/25a6634@@pbbam@sha/StringUtilities.cpp.o'.
[63/119] Compiling C++ object 'src/25a6634@@pbbam@sha/SequenceInfo.cpp.o'.
[64/119] Compiling C++ object 'src/25a6634@@pbbam@sha/TagCollection.cpp.o'.
[65/119] Compiling C++ object 'src/25a6634@@pbbam@sha/ReadAccuracyQuery.cpp.o'.
[66/119] Compiling C++ object 'src/25a6634@@pbbam@sha/SamTagCodec.cpp.o'.
[67/119] Compiling C++ object 'src/25a6634@@pbbam@sha/ValidationErrors.cpp.o'.
[68/119] Compiling C++ object 'src/25a6634@@pbbam@sha/ValidationException.cpp.o'.
[69/119] Compiling C++ object 'src/25a6634@@pbbam@sha/Version.cpp.o'.
[70/119] Compiling C++ object 'src/25a6634@@pbbam@sha/PbiFilter.cpp.o'.
[71/119] Compiling C++ object 'src/25a6634@@pbbam@sha/VirtualRegion.cpp.o'.
[72/119] Compiling C++ object 'src/25a6634@@pbbam@sha/VirtualRegionTypeMap.cpp.o'.
[73/119] Compiling C++ object 'src/25a6634@@pbbam@sha/SubreadLengthQuery.cpp.o'.
[74/119] Compiling C++ object 'src/25a6634@@pbbam@sha/Validator.cpp.o'.
[75/119] Compiling C++ object 'src/25a6634@@pbbam@sha/XmlWriter.cpp.o'.
[76/119] Compiling C++ object 'src/25a6634@@pbbam@sha/ReadGroupInfo.cpp.o'.
[77/119] Compiling C++ object 'src/25a6634@@pbbam@sha/VirtualZmwReader.cpp.o'.
[78/119] Compiling C++ object 'src/25a6634@@pbbam@sha/VirtualZmwBamRecord.cpp.o'.
[79/119] Compiling C++ object 'src/25a6634@@pbbam@sha/ZmwTypeMap.cpp.o'.
[80/119] Compiling C++ object 'src/25a6634@@pbbam@sha/vcf_VcfFile.cpp.o'.
[81/119] Compiling C++ object 'src/25a6634@@pbbam@sha/VirtualZmwCompositeReader.cpp.o'.
[82/119] Compiling C++ object 'src/25a6634@@pbbam@sha/XmlReader.cpp.o'.
[83/119] Compiling C++ object 'src/25a6634@@pbbam@sha/WhitelistedZmwReadStitcher.cpp.o'.
[84/119] Compiling C++ object 'src/25a6634@@pbbam@sha/vcf_VcfReader.cpp.o'.
[85/119] Compiling C++ object 'src/25a6634@@pbbam@sha/Tag.cpp.o'.
[86/119] Compiling C++ object 'src/25a6634@@pbbam@sha/vcf_VcfHeaderTypes.cpp.o'.
[87/119] Compiling C++ object 'src/25a6634@@pbbam@sha/vcf_VcfHeader.cpp.o'.
[88/119] Compiling C++ object 'src/25a6634@@pbbam@sha/ZmwReadStitcher.cpp.o'.
[89/119] Compiling C++ object 'src/25a6634@@pbbam@sha/vcf_VcfWriter.cpp.o'.
[90/119] Compiling C++ object 'src/25a6634@@pbbam@sha/vcf_VcfFormat.cpp.o'.
[91/119] Compiling C++ object 'src/25a6634@@pbbam@sha/vcf_VcfQuery.cpp.o'.
[92/119] Compiling C++ object 'tools/f9d35d4@@bam2sam@exe/bam2sam_src_Bam2Sam.cpp.o'.
[93/119] Compiling C++ object 'src/25a6634@@pbbam@sha/ZmwGroupQuery.cpp.o'.
[94/119] Compiling C++ object 'tools/f9d35d4@@bam2sam@exe/bam2sam_src_main.cpp.o'.
[95/119] Compiling C++ object 'tools/f9d35d4@@pbindex@exe/pbindex_src_PbIndex.cpp.o'.
[96/119] Compiling C++ object 'src/25a6634@@pbbam@sha/vcf_VcfVariant.cpp.o'.
[97/119] Compiling C++ object 'src/25a6634@@pbbam@sha/vcf_VcfSort.cpp.o'.
[98/119] Compiling C++ object 'tools/f9d35d4@@pbindex@exe/pbindex_src_main.cpp.o'.
[99/119] Compiling C++ object 'tools/f9d35d4@@pbindexdump@exe/pbindexdump_src_PbIndexDump.cpp.o'.
[100/119] Compiling C++ object 'tools/f9d35d4@@bam2sam@exe/common_OptionParser.cpp.o'.
[101/119] Compiling C++ object 'tools/f9d35d4@@pbindexdump@exe/pbindexdump_src_CppFormatter.cpp.o'.
[102/119] Linking target tools/bam2sam.
[103/119] Compiling C++ object 'tools/f9d35d4@@pbindex@exe/common_OptionParser.cpp.o'.
[104/119] Compiling C++ object 'tools/f9d35d4@@pbindexdump@exe/pbindexdump_src_main.cpp.o'.
[105/119] Compiling C++ object 'tools/f9d35d4@@pbindexdump@exe/common_OptionParser.cpp.o'.
[106/119] Compiling C++ object 'src/25a6634@@pbbam@sha/pugixml_pugixml.cpp.o'.
[107/119] Compiling C++ object 'tools/f9d35d4@@pbmerge@exe/pbmerge_src_main.cpp.o'.
[108/119] Linking target src/libpbbam.so.0.23.0.
[109/119] Compiling C++ object 'tools/f9d35d4@@pbmerge@exe/common_OptionParser.cpp.o'.
[110/119] Generating symbol file 'src/25a6634@@pbbam@sha/libpbbam.so.0.23.0.symbols'.
[111/119] Compiling C++ object 'tools/f9d35d4@@pbbamify@exe/common_OptionParser.cpp.o'.
[112/119] Linking target tools/pbmerge.
[113/119] Linking target tools/pbindex.
[114/119] Compiling C++ object 'tools/f9d35d4@@pbbamify@exe/pbbamify_src_main.cpp.o'.
[115/119] Compiling C++ object 'tools/f9d35d4@@pbindexdump@exe/pbindexdump_src_JsonFormatter.cpp.o'.
[116/119] Compiling C++ object 'tools/f9d35d4@@pbbamify@exe/pbbamify_src_QueryLookup.cpp.o'.
[117/119] Compiling C++ object 'tools/f9d35d4@@pbbamify@exe/pbbamify_src_PbBamify.cpp.o'.
[118/119] Linking target tools/pbindexdump.
[119/119] Linking target tools/pbbamify.
phase `build' succeeded after 92.6 seconds
starting phase `check'
test suite not run
phase `check' succeeded after 0.0 seconds
starting phase `install'
[0/1] Installing files.
Installing src/libpbbam.so.0.23.0 to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/lib
Installing tools/bam2sam to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/bin
Installing tools/pbindex to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/bin
Installing tools/pbindexdump to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/bin
Installing tools/pbmerge to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/bin
Installing tools/pbbamify to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/bin
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/Accuracy.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/AlignmentPrinter.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/BaiIndexedBamReader.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/BamFile.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/BamFileMerger.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/BamHeader.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/BamReader.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/BamRecord.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/BamRecordBuilder.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/BamRecordImpl.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/BamRecordTag.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/BamRecordView.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/BamTagCodec.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/BamWriter.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/BarcodeQuery.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/Cigar.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/CigarOperation.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/ClipType.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/Compare.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/CompositeBamReader.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/CompositeFastaReader.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/Config.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/DataSet.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/DataSetTypes.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/DataSetXsd.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/EntireFileQuery.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/FastaCache.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/FastaReader.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/FastaSequence.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/FastaSequenceQuery.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/FastaWriter.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/FastqReader.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/FastqSequence.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/FastqWriter.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/FrameEncodingType.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/Frames.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/GenomicInterval.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/GenomicIntervalQuery.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/IndexedBamWriter.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/IndexedFastaReader.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/Interval.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/IRecordWriter.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/LocalContextFlags.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/MakeUnique.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/MD5.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/MoveAppend.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/Orientation.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/PbiBasicTypes.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/PbiBuilder.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/PbiFile.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/PbiFilter.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/PbiFilterQuery.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/PbiFilterTypes.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/PbiIndexedBamReader.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/PbiRawData.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/Position.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/ProgramInfo.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/PulseBehavior.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/PulseExclusionReason.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/QNameQuery.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/QualityValue.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/QualityValues.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/ReadAccuracyQuery.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/ReadGroupInfo.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/RecordType.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/SamTagCodec.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/SamWriter.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/SequenceInfo.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/Strand.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/StringUtilities.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/SubreadLengthQuery.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/Tag.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/TagCollection.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/Unused.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/Validator.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/ZmwGroupQuery.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/ZmwQuery.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/ZmwType.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/ZmwTypeMap.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/exception/BundleChemistryMappingException.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/exception
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/exception/InvalidSequencingChemistryException.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/exception
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/exception/ValidationException.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/exception
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/internal/Compare.inl to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/internal
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/internal/CompositeBamReader.inl to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/internal
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/internal/DataSetBaseTypes.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/internal
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/internal/DataSetElement.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/internal
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/internal/DataSetElement.inl to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/internal
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/internal/Interval.inl to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/internal
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/internal/PbiBasicTypes.inl to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/internal
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/internal/PbiFilter.inl to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/internal
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/internal/PbiFilterTypes.inl to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/internal
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/internal/QueryBase.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/internal
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/internal/QueryBase.inl to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/internal
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/vcf/VcfVariant.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/vcf
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/vcf/VcfFile.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/vcf
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/vcf/VcfFormat.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/vcf
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/vcf/VcfHeader.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/vcf
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/vcf/VcfHeaderTypes.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/vcf
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/vcf/VcfReader.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/vcf
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/vcf/VcfSort.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/vcf
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/vcf/VcfQuery.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/vcf
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/vcf/VcfWriter.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/vcf
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/virtual/VirtualPolymeraseBamRecord.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/virtual
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/virtual/VirtualPolymeraseCompositeReader.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/virtual
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/virtual/VirtualPolymeraseReader.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/virtual
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/virtual/VirtualRegion.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/virtual
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/virtual/VirtualRegionType.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/virtual
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/virtual/VirtualRegionTypeMap.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/virtual
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/virtual/VirtualZmwBamRecord.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/virtual
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/virtual/WhitelistedZmwReadStitcher.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/virtual
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/virtual/ZmwReadStitcher.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/virtual
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/source/include/pbbam/virtual/ZmwWhitelistVirtualReader.h to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/include/pbbam/virtual
Installing /tmp/guix-build-pbbam-0.23.0.drv-0/build/meson-private/pbbam.pc to /gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/lib/pkgconfig
phase `install' succeeded after 0.6 seconds
starting phase `patch-shebangs'
phase `patch-shebangs' succeeded after 0.0 seconds
starting phase `strip'
stripping binaries in "/gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/lib" with "strip" and flags ("--strip-debug")
stripping binaries in "/gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/bin" with "strip" and flags ("--strip-debug")
phase `strip' succeeded after 0.1 seconds
starting phase `shrink-runpath'
/gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/lib/libpbbam.so: stripping RUNPATH to ("/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/lib" "/gnu/store/01b4w3m6mp55y531kyi1g8shh722kwqm-gcc-7.5.0-lib/lib" "/gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/lib" "/gnu/store/02x2wdjwnp8va1ww9hm0vx118j7w7nyv-htslib-1.11/lib" "/gnu/store/01b4w3m6mp55y531kyi1g8shh722kwqm-gcc-7.5.0-lib/lib/gcc/x86_64-unknown-linux-gnu/7.5.0/../../..") (removed ("/gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/lib"))
/gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/bin/bam2sam: stripping RUNPATH to ("/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/lib" "/gnu/store/01b4w3m6mp55y531kyi1g8shh722kwqm-gcc-7.5.0-lib/lib" "/gnu/store/02x2wdjwnp8va1ww9hm0vx118j7w7nyv-htslib-1.11/lib" "/gnu/store/01b4w3m6mp55y531kyi1g8shh722kwqm-gcc-7.5.0-lib/lib/gcc/x86_64-unknown-linux-gnu/7.5.0/../../..") (removed ("/gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/lib" "/gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/lib"))
/gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/bin/pbbamify: stripping RUNPATH to ("/gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/lib" "/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/lib" "/gnu/store/01b4w3m6mp55y531kyi1g8shh722kwqm-gcc-7.5.0-lib/lib" "/gnu/store/01b4w3m6mp55y531kyi1g8shh722kwqm-gcc-7.5.0-lib/lib/gcc/x86_64-unknown-linux-gnu/7.5.0/../../..") (removed ("$ORIGIN/../src" "/gnu/store/02x2wdjwnp8va1ww9hm0vx118j7w7nyv-htslib-1.11/lib" "/gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/lib"))
/gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/bin/pbindex: stripping RUNPATH to ("/gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/lib" "/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/lib" "/gnu/store/01b4w3m6mp55y531kyi1g8shh722kwqm-gcc-7.5.0-lib/lib" "/gnu/store/01b4w3m6mp55y531kyi1g8shh722kwqm-gcc-7.5.0-lib/lib/gcc/x86_64-unknown-linux-gnu/7.5.0/../../..") (removed ("$ORIGIN/../src" "/gnu/store/02x2wdjwnp8va1ww9hm0vx118j7w7nyv-htslib-1.11/lib" "/gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/lib"))
/gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/bin/pbindexdump: stripping RUNPATH to ("/gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/lib" "/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/lib" "/gnu/store/01b4w3m6mp55y531kyi1g8shh722kwqm-gcc-7.5.0-lib/lib" "/gnu/store/01b4w3m6mp55y531kyi1g8shh722kwqm-gcc-7.5.0-lib/lib/gcc/x86_64-unknown-linux-gnu/7.5.0/../../..") (removed ("$ORIGIN/../src" "/gnu/store/02x2wdjwnp8va1ww9hm0vx118j7w7nyv-htslib-1.11/lib" "/gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/lib"))
/gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/bin/pbmerge: stripping RUNPATH to ("/gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/lib" "/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/lib" "/gnu/store/01b4w3m6mp55y531kyi1g8shh722kwqm-gcc-7.5.0-lib/lib" "/gnu/store/01b4w3m6mp55y531kyi1g8shh722kwqm-gcc-7.5.0-lib/lib/gcc/x86_64-unknown-linux-gnu/7.5.0/../../..") (removed ("$ORIGIN/../src" "/gnu/store/02x2wdjwnp8va1ww9hm0vx118j7w7nyv-htslib-1.11/lib" "/gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/lib"))
phase `shrink-runpath' succeeded after 0.0 seconds
starting phase `validate-runpath'
validating RUNPATH of 1 binaries in "/gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/lib"...
validating RUNPATH of 5 binaries in "/gnu/store/r8y1ihplhakkswh8xm33m927gl49gbyf-pbbam-0.23.0/bin"...
phase `validate-runpath' succeeded after 0.0 seconds
starting phase `validate-documentation-location'
phase `validate-documentation-location' succeeded after 0.0 seconds
starting phase `delete-info-dir-file'
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starting phase `compress-documentation'
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