starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/bin:/gnu/store/3lx5rw6aazp1cskcbmhd3mb842zanj88-tar-1.32/bin:/gnu/store/43y9wjllnr1sczwlfi0vxh27zp28zixh-gzip-1.10/bin:/gnu/store/mhbai8872azipnxr9lw3gr8jqxf6348j-bzip2-1.0.8/bin:/gnu/store/b2m3hnb7gr526jcs8xj0d7fig73qlhv0-xz-5.2.4/bin:/gnu/store/ivj4vx0mc2fz0ipi5knb32r6d992y0b0-file-5.38/bin:/gnu/store/hn05v0h7qiqdq59avr247a3wd8kpsvg0-diffutils-3.7/bin:/gnu/store/4s297bh5gg8dixd9n6xkw2z73cxd1v91-patch-2.7.6/bin:/gnu/store/9gawha19xlpkz9qk6z9lcgfxfq5bj27a-findutils-4.7.0/bin:/gnu/store/3d1n6zsw6zli7agb0ica7x4145haga4z-gawk-5.0.1/bin:/gnu/store/bqcvgh7q4316fynb9wg6akvlk9ikdjj5-sed-4.8/bin:/gnu/store/iqxcm511fivbrlik4i7ly3dxn53qm689-grep-3.4/bin:/gnu/store/x5z9z2d06w4yj4kq18i4b5q2yxg0w9dh-coreutils-8.32/bin:/gnu/store/igqylz2nzjk6x4ax07i6838jdp22yjm6-make-4.3/bin:/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin:/gnu/store/2nygnpi7zns33k9k1dr3y0md5kg8b876-ld-wrapper-0/bin:/gnu/store/ghy9qhlb3ad9xmxxhfmdia643xfnhysa-binutils-2.34/bin:/gnu/store/h1cy6hq72yxnwi4nh0h1fjz8kxgfp8wy-gcc-7.5.0/bin:/gnu/store/sipyfs2540b48b2sb9j8ypmybja1dvqb-glibc-2.31/bin:/gnu/store/sipyfs2540b48b2sb9j8ypmybja1dvqb-glibc-2.31/sbin'
environment variable `R_LIBS_SITE' set to `/gnu/store/mwbf02wzw8by61yjvlylasn2pj8ibsrz-r-knitr-1.33/site-library/:/gnu/store/0m3nxxwixchl6kqlgzmlp2a78ybw1p8s-r-biocgenerics-0.36.1/site-library/:/gnu/store/25p1ln0d5944da8w96nar2gjva7sh4np-r-genomicranges-1.42.0/site-library/:/gnu/store/95yb26gqni9zllq5i58w8wl3w976s2zf-r-rcurl-1.95-0.1.2/site-library/:/gnu/store/8skp9l2f6mn6jndn2d9dk2daijg8kqj7-r-s4vectors-0.28.1/site-library/:/gnu/store/ca8m0hdd6wqhz06ssxdryg502rpvfq49-r-yaml-2.2.1/site-library/:/gnu/store/n81q2nq4gggw3v30nlgy90z243md13az-r-xfun-0.22/site-library/:/gnu/store/9z9mlppm2q9fkkxd1yyvf82yd3ni489a-r-stringr-1.4.0/site-library/:/gnu/store/nir3m09h23ia67n8qjfbq9ynlka9isxj-r-markdown-1.1/site-library/:/gnu/store/23h2jcrfs7r68mf25q9gx46vjkghcskz-r-highr-0.9/site-library/:/gnu/store/bad0jfjdad98q9c2cz2mr977jiah1srp-r-evaluate-0.14/site-library/:/gnu/store/y8d3jq0xyrbgfyh6w7x8v45wk5xgyslr-r-xvector-0.30.0/site-library/:/gnu/store/7l7956bqls41s3s7n057fvhs08s43v4l-r-iranges-2.24.1/site-library/:/gnu/store/ymgxz51cwd7hshm7w01glb2mq3ipg6jp-r-genomeinfodb-1.26.7/site-library/:/gnu/store/aypmh6y4wcpj39mprvmmpn1m0hy2lkhn-r-bitops-1.0-7/site-library/:/gnu/store/2nzvjrhxx0wppnyadgil1947qv05drdb-r-stringi-1.5.3/site-library/:/gnu/store/x563sx371r02a82yj8nj7k36d13jcklv-r-magrittr-2.0.1/site-library/:/gnu/store/wv6xq5akzprvwapmlj9ch1kq26m6xy0k-r-glue-1.4.2/site-library/:/gnu/store/hsdig1brwh59lq5fm6ajqfxzclpmcb1l-r-mime-0.10/site-library/:/gnu/store/vqav2qvqw4fq3vqf5pngffl32427fr9a-r-genomeinfodbdata-1.2.0/site-library/'
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/mhbai8872azipnxr9lw3gr8jqxf6348j-bzip2-1.0.8/include:/gnu/store/b2m3hnb7gr526jcs8xj0d7fig73qlhv0-xz-5.2.4/include:/gnu/store/ivj4vx0mc2fz0ipi5knb32r6d992y0b0-file-5.38/include:/gnu/store/3d1n6zsw6zli7agb0ica7x4145haga4z-gawk-5.0.1/include:/gnu/store/igqylz2nzjk6x4ax07i6838jdp22yjm6-make-4.3/include:/gnu/store/ghy9qhlb3ad9xmxxhfmdia643xfnhysa-binutils-2.34/include:/gnu/store/h1cy6hq72yxnwi4nh0h1fjz8kxgfp8wy-gcc-7.5.0/include:/gnu/store/sipyfs2540b48b2sb9j8ypmybja1dvqb-glibc-2.31/include:/gnu/store/sg9ks2n9ikj4952zmf2g851g206zb0r9-linux-libre-headers-5.4.20/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/mhbai8872azipnxr9lw3gr8jqxf6348j-bzip2-1.0.8/include:/gnu/store/b2m3hnb7gr526jcs8xj0d7fig73qlhv0-xz-5.2.4/include:/gnu/store/ivj4vx0mc2fz0ipi5knb32r6d992y0b0-file-5.38/include:/gnu/store/3d1n6zsw6zli7agb0ica7x4145haga4z-gawk-5.0.1/include:/gnu/store/igqylz2nzjk6x4ax07i6838jdp22yjm6-make-4.3/include:/gnu/store/ghy9qhlb3ad9xmxxhfmdia643xfnhysa-binutils-2.34/include:/gnu/store/h1cy6hq72yxnwi4nh0h1fjz8kxgfp8wy-gcc-7.5.0/include/c++:/gnu/store/h1cy6hq72yxnwi4nh0h1fjz8kxgfp8wy-gcc-7.5.0/include:/gnu/store/sipyfs2540b48b2sb9j8ypmybja1dvqb-glibc-2.31/include:/gnu/store/sg9ks2n9ikj4952zmf2g851g206zb0r9-linux-libre-headers-5.4.20/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib:/gnu/store/mhbai8872azipnxr9lw3gr8jqxf6348j-bzip2-1.0.8/lib:/gnu/store/b2m3hnb7gr526jcs8xj0d7fig73qlhv0-xz-5.2.4/lib:/gnu/store/ivj4vx0mc2fz0ipi5knb32r6d992y0b0-file-5.38/lib:/gnu/store/3d1n6zsw6zli7agb0ica7x4145haga4z-gawk-5.0.1/lib:/gnu/store/ghy9qhlb3ad9xmxxhfmdia643xfnhysa-binutils-2.34/lib:/gnu/store/sipyfs2540b48b2sb9j8ypmybja1dvqb-glibc-2.31/lib:/gnu/store/q5xs9789fyb5rnnr1nvq3zjd8biif14y-glibc-2.31-static/lib:/gnu/store/aybfkaw4fasp8hk1hzk3npmi952g11a3-glibc-utf8-locales-2.31/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/aybfkaw4fasp8hk1hzk3npmi952g11a3-glibc-utf8-locales-2.31/lib/locale'
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'en_US.utf8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
BiocIO/DESCRIPTION
BiocIO/NAMESPACE
BiocIO/R/
BiocIO/R/BiocFile.R
BiocIO/R/compression.R
BiocIO/R/export.R
BiocIO/R/import.R
BiocIO/R/yield.R
BiocIO/README.md
BiocIO/build/
BiocIO/build/vignette.rds
BiocIO/inst/
BiocIO/inst/doc/
BiocIO/inst/doc/BiocIO.R
BiocIO/inst/doc/BiocIO.Rmd
BiocIO/inst/doc/BiocIO.html
BiocIO/man/
BiocIO/man/BiocFile-class.Rd
BiocIO/man/export.Rd
BiocIO/tests/
BiocIO/tests/testthat/
BiocIO/tests/testthat.R
BiocIO/tests/testthat/test_export_import_yield.R
BiocIO/tests/testthat/test_utils.R
BiocIO/vignettes/
BiocIO/vignettes/BiocIO.Rmd
phase `unpack' succeeded after 0.0 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
phase `patch-source-shebangs' succeeded after 0.0 seconds
starting phase `patch-generated-file-shebangs'
phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `install'
* installing *source* package ‘BiocIO’ ...
** using staged installation
** R
** inst
** tests
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiocIO)
phase `install' succeeded after 13.7 seconds
starting phase `check'
Testing examples for package ‘BiocIO’
Running specific tests for package ‘BiocIO’
  Running ‘testthat.R’
phase `check' succeeded after 4.6 seconds
starting phase `patch-shebangs'
phase `patch-shebangs' succeeded after 0.0 seconds
starting phase `strip'
phase `strip' succeeded after 0.0 seconds
starting phase `validate-runpath'
phase `validate-runpath' succeeded after 0.0 seconds
starting phase `validate-documentation-location'
phase `validate-documentation-location' succeeded after 0.0 seconds
starting phase `delete-info-dir-file'
phase `delete-info-dir-file' succeeded after 0.0 seconds
starting phase `patch-dot-desktop-files'
phase `patch-dot-desktop-files' succeeded after 0.0 seconds
starting phase `install-license-files'
installing 0 license files from '.'
phase `install-license-files' succeeded after 0.0 seconds
starting phase `reset-gzip-timestamps'
phase `reset-gzip-timestamps' succeeded after 0.0 seconds
starting phase `compress-documentation'
phase `compress-documentation' succeeded after 0.0 seconds