starting phase `set-SOURCE-DATE-EPOCH' phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds starting phase `set-paths' environment variable `PATH' set to `/gnu/store/6s3mkll9wvgxgkczsjcl9nfqm74wi0mj-tar-1.34/bin:/gnu/store/6rxsi5nqx8dsmvx2ypyz81gb1n4csy3g-gzip-1.10/bin:/gnu/store/iipgssk08gmmkwxv5iyv1lm3blilvdir-bzip2-1.0.8/bin:/gnu/store/11gnzwa2qbqlg4pziysdk2fkbhrhhwrc-xz-5.2.5/bin:/gnu/store/6s9hy00b522g268spk3qasd8j8mg5z7r-file-5.39/bin:/gnu/store/b4s2gz0dyjhsym9rczyg21y909s2yzd1-diffutils-3.8/bin:/gnu/store/q89awzgsj00y74bmqlb4gl6b0plwi0k6-patch-2.7.6/bin:/gnu/store/bgmbk0abkm6nngmgam84fmb6m38kbndi-findutils-4.8.0/bin:/gnu/store/7mfpmrswg4y7apk0hri9hiwgn6xbbh9q-gawk-5.1.0/bin:/gnu/store/fkncn0815qj7k11zj05hyz670gdnb3jv-sed-4.8/bin:/gnu/store/14c1lz6vp2wqs6gh7m48rw3klx6bkvm8-grep-3.6/bin:/gnu/store/yixhh3q2i1x8pqpfq9nz83p15svg698m-coreutils-8.32/bin:/gnu/store/zz2br0lgdw6j6x6yvd0x49775gwn3bry-make-4.3/bin:/gnu/store/sbnx4xjgw2f2c5hxvv2qfdiqqnqyi7zr-bash-minimal-5.1.8/bin:/gnu/store/0mdldh4ih1ff6d7lfya0d62d9vd5d5m8-ld-wrapper-0/bin:/gnu/store/xnxxwmcdv1fl14y9a7c9bkxx8r0rza1j-binutils-2.37/bin:/gnu/store/fnkgp9a8yq4401nijp8v5v7aq1vqrx70-gcc-10.3.0/bin:/gnu/store/bgw8ciirrbpxbds3v9wklf1isysqjlsl-glibc-2.33/bin:/gnu/store/bgw8ciirrbpxbds3v9wklf1isysqjlsl-glibc-2.33/sbin' environment variable `BASH_LOADABLES_PATH' unset environment variable `C_INCLUDE_PATH' set to `/gnu/store/iipgssk08gmmkwxv5iyv1lm3blilvdir-bzip2-1.0.8/include:/gnu/store/11gnzwa2qbqlg4pziysdk2fkbhrhhwrc-xz-5.2.5/include:/gnu/store/6s9hy00b522g268spk3qasd8j8mg5z7r-file-5.39/include:/gnu/store/7mfpmrswg4y7apk0hri9hiwgn6xbbh9q-gawk-5.1.0/include:/gnu/store/zz2br0lgdw6j6x6yvd0x49775gwn3bry-make-4.3/include:/gnu/store/xnxxwmcdv1fl14y9a7c9bkxx8r0rza1j-binutils-2.37/include:/gnu/store/fnkgp9a8yq4401nijp8v5v7aq1vqrx70-gcc-10.3.0/include:/gnu/store/bgw8ciirrbpxbds3v9wklf1isysqjlsl-glibc-2.33/include:/gnu/store/fgc0c133apyavjkjhjbz54afy3100wxq-linux-libre-headers-5.10.35/include' environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/iipgssk08gmmkwxv5iyv1lm3blilvdir-bzip2-1.0.8/include:/gnu/store/11gnzwa2qbqlg4pziysdk2fkbhrhhwrc-xz-5.2.5/include:/gnu/store/6s9hy00b522g268spk3qasd8j8mg5z7r-file-5.39/include:/gnu/store/7mfpmrswg4y7apk0hri9hiwgn6xbbh9q-gawk-5.1.0/include:/gnu/store/zz2br0lgdw6j6x6yvd0x49775gwn3bry-make-4.3/include:/gnu/store/xnxxwmcdv1fl14y9a7c9bkxx8r0rza1j-binutils-2.37/include:/gnu/store/fnkgp9a8yq4401nijp8v5v7aq1vqrx70-gcc-10.3.0/include/c++:/gnu/store/fnkgp9a8yq4401nijp8v5v7aq1vqrx70-gcc-10.3.0/include:/gnu/store/bgw8ciirrbpxbds3v9wklf1isysqjlsl-glibc-2.33/include:/gnu/store/fgc0c133apyavjkjhjbz54afy3100wxq-linux-libre-headers-5.10.35/include' environment variable `LIBRARY_PATH' set to `/gnu/store/iipgssk08gmmkwxv5iyv1lm3blilvdir-bzip2-1.0.8/lib:/gnu/store/11gnzwa2qbqlg4pziysdk2fkbhrhhwrc-xz-5.2.5/lib:/gnu/store/6s9hy00b522g268spk3qasd8j8mg5z7r-file-5.39/lib:/gnu/store/7mfpmrswg4y7apk0hri9hiwgn6xbbh9q-gawk-5.1.0/lib:/gnu/store/xnxxwmcdv1fl14y9a7c9bkxx8r0rza1j-binutils-2.37/lib:/gnu/store/bgw8ciirrbpxbds3v9wklf1isysqjlsl-glibc-2.33/lib:/gnu/store/1xfiv21xwzqf3j56phh8j2lg227391y5-glibc-2.33-static/lib:/gnu/store/w34424h2ihfqfxn72aj08h8z5rjvfk0r-glibc-utf8-locales-2.33/lib' environment variable `GUIX_LOCPATH' set to `/gnu/store/w34424h2ihfqfxn72aj08h8z5rjvfk0r-glibc-utf8-locales-2.33/lib/locale' phase `set-paths' succeeded after 0.0 seconds starting phase `install-locale' using 'en_US.utf8' locale for category "LC_ALL" phase `install-locale' succeeded after 0.0 seconds starting phase `unpack' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/ChangeLog' -> `./ChangeLog' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/config.h.in~' -> `./config.h.in~' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/missing' -> `./missing' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/history.txt' -> `./history.txt' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/INSTALL' -> `./INSTALL' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/Makefile.am' -> `./Makefile.am' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/test_seqs.fasta' -> `./test_seqs.fasta' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/compile' -> `./compile' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/COPYING' -> `./COPYING' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/README.md' -> `./README.md' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/install-sh' -> `./install-sh' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/.gitignore' -> `./.gitignore' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/AUTHORS' -> `./AUTHORS' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/configure.ac' -> `./configure.ac' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/config.h.in' -> `./config.h.in' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/NEWS' -> `./NEWS' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/README' -> `./README' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/test_seqs.txt' -> `./test_seqs.txt' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/configure' -> `./configure' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/Makefile.in' -> `./Makefile.in' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/config.sub' -> `./config.sub' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/config.guess' -> `./config.guess' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/depcomp' -> `./depcomp' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/configure.scan' -> `./configure.scan' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/aclocal.m4' -> `./aclocal.m4' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/src/Makefile.am' -> `./src/Makefile.am' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/src/trfclean.h' -> `./src/trfclean.h' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/src/tr30dat.c' -> `./src/tr30dat.c' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/src/trfrun.h' -> `./src/trfrun.h' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/src/Makefile.in' -> `./src/Makefile.in' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/src/trf.c' -> `./src/trf.c' `/gnu/store/hk85hk0qhxd17w33hgam6cwjx3v2nz8a-trf-4.09.1-checkout/src/tr30dat.h' -> `./src/tr30dat.h' phase `unpack' succeeded after 0.0 seconds starting phase `bootstrap' GNU build system bootstrapping not needed phase `bootstrap' succeeded after 0.0 seconds starting phase `patch-usr-bin-file' phase `patch-usr-bin-file' succeeded after 0.1 seconds starting phase `patch-source-shebangs' patch-shebang: ./compile: changing `/bin/sh' to `/gnu/store/sbnx4xjgw2f2c5hxvv2qfdiqqnqyi7zr-bash-minimal-5.1.8/bin/sh' patch-shebang: ./config.guess: changing `/bin/sh' to `/gnu/store/sbnx4xjgw2f2c5hxvv2qfdiqqnqyi7zr-bash-minimal-5.1.8/bin/sh' patch-shebang: ./config.sub: changing `/bin/sh' to `/gnu/store/sbnx4xjgw2f2c5hxvv2qfdiqqnqyi7zr-bash-minimal-5.1.8/bin/sh' patch-shebang: ./configure: changing `/bin/sh' to `/gnu/store/sbnx4xjgw2f2c5hxvv2qfdiqqnqyi7zr-bash-minimal-5.1.8/bin/sh' patch-shebang: ./depcomp: changing `/bin/sh' to `/gnu/store/sbnx4xjgw2f2c5hxvv2qfdiqqnqyi7zr-bash-minimal-5.1.8/bin/sh' patch-shebang: ./install-sh: changing `/bin/sh' to `/gnu/store/sbnx4xjgw2f2c5hxvv2qfdiqqnqyi7zr-bash-minimal-5.1.8/bin/sh' patch-shebang: ./missing: changing `/bin/sh' to `/gnu/store/sbnx4xjgw2f2c5hxvv2qfdiqqnqyi7zr-bash-minimal-5.1.8/bin/sh' phase `patch-source-shebangs' succeeded after 0.0 seconds starting phase `configure' source directory: "/tmp/guix-build-trf-4.09.1.drv-0/source" (relative from build: ".") build directory: "/tmp/guix-build-trf-4.09.1.drv-0/source" configure flags: ("CONFIG_SHELL=/gnu/store/sbnx4xjgw2f2c5hxvv2qfdiqqnqyi7zr-bash-minimal-5.1.8/bin/bash" "SHELL=/gnu/store/sbnx4xjgw2f2c5hxvv2qfdiqqnqyi7zr-bash-minimal-5.1.8/bin/bash" "--prefix=/gnu/store/r3vawx7xnp5zmkg7ins4bfssngw3k8gi-trf-4.09.1" "--enable-fast-install" "--build=powerpc64le-unknown-linux-gnu") configure: WARNING: unrecognized options: --enable-fast-install checking build system type... powerpc64le-unknown-linux-gnu checking host system type... powerpc64le-unknown-linux-gnu checking target system type... powerpc64le-unknown-linux-gnu checking for a BSD-compatible install... /gnu/store/yixhh3q2i1x8pqpfq9nz83p15svg698m-coreutils-8.32/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /gnu/store/yixhh3q2i1x8pqpfq9nz83p15svg698m-coreutils-8.32/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... no checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... gcc3 checking for ranlib... ranlib checking whether ln -s works... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /gnu/store/14c1lz6vp2wqs6gh7m48rw3klx6bkvm8-grep-3.6/bin/grep checking for egrep... /gnu/store/14c1lz6vp2wqs6gh7m48rw3klx6bkvm8-grep-3.6/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for size_t... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for library containing floor... -lm checking for sqrt... yes checking for memset... yes checking for strchr... yes checking for strerror... yes checking for strstr... yes checking for strtol... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --enable-fast-install phase `configure' succeeded after 3.0 seconds starting phase `patch-generated-file-shebangs' phase `patch-generated-file-shebangs' succeeded after 0.0 seconds starting phase `build' make all-recursive make[1]: Entering directory '/tmp/guix-build-trf-4.09.1.drv-0/source' Making all in src make[2]: Entering directory '/tmp/guix-build-trf-4.09.1.drv-0/source/src' gcc -DHAVE_CONFIG_H -I. -I.. -fno-align-functions -fno-align-loops -g -O2 -MT trf-trf.o -MD -MP -MF .deps/trf-trf.Tpo -c -o trf-trf.o `test -f 'trf.c' || echo './'`trf.c In file included from trfrun.h:89, from trf.c:30: tr30dat.h:49:9: note: ‘#pragma message: You forgot to define a platform when compiling. Setting UNIXCONSOLE.’ 49 | #pragma message( \ | ^~~~~~~ mv -f .deps/trf-trf.Tpo .deps/trf-trf.Po gcc -fno-align-functions -fno-align-loops -g -O2 -o trf trf-trf.o -lm make[2]: Leaving directory '/tmp/guix-build-trf-4.09.1.drv-0/source/src' make[2]: Entering directory '/tmp/guix-build-trf-4.09.1.drv-0/source' make[2]: Leaving directory '/tmp/guix-build-trf-4.09.1.drv-0/source' make[1]: Leaving directory '/tmp/guix-build-trf-4.09.1.drv-0/source' phase `build' succeeded after 5.0 seconds starting phase `check' Making check in src make[1]: Entering directory '/tmp/guix-build-trf-4.09.1.drv-0/source/src' make[1]: Nothing to be done for 'check'. make[1]: Leaving directory '/tmp/guix-build-trf-4.09.1.drv-0/source/src' make[1]: Entering directory '/tmp/guix-build-trf-4.09.1.drv-0/source' make[1]: Leaving directory '/tmp/guix-build-trf-4.09.1.drv-0/source' phase `check' succeeded after 0.1 seconds starting phase `install' Making install in src make[1]: Entering directory '/tmp/guix-build-trf-4.09.1.drv-0/source/src' make[2]: Entering directory '/tmp/guix-build-trf-4.09.1.drv-0/source/src' /gnu/store/yixhh3q2i1x8pqpfq9nz83p15svg698m-coreutils-8.32/bin/mkdir -p '/gnu/store/r3vawx7xnp5zmkg7ins4bfssngw3k8gi-trf-4.09.1/bin' /gnu/store/yixhh3q2i1x8pqpfq9nz83p15svg698m-coreutils-8.32/bin/install -c trf '/gnu/store/r3vawx7xnp5zmkg7ins4bfssngw3k8gi-trf-4.09.1/bin' make install-exec-hook make[3]: Entering directory '/tmp/guix-build-trf-4.09.1.drv-0/source/src' ln -s /gnu/store/r3vawx7xnp5zmkg7ins4bfssngw3k8gi-trf-4.09.1/bin/trf \ /gnu/store/r3vawx7xnp5zmkg7ins4bfssngw3k8gi-trf-4.09.1/bin/trf4.10.0-rc.2.linux.exe make[3]: Leaving directory '/tmp/guix-build-trf-4.09.1.drv-0/source/src' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/tmp/guix-build-trf-4.09.1.drv-0/source/src' make[1]: Leaving directory '/tmp/guix-build-trf-4.09.1.drv-0/source/src' make[1]: Entering directory '/tmp/guix-build-trf-4.09.1.drv-0/source' make[2]: Entering directory '/tmp/guix-build-trf-4.09.1.drv-0/source' make[2]: Nothing to be done for 'install-exec-am'. /gnu/store/yixhh3q2i1x8pqpfq9nz83p15svg698m-coreutils-8.32/bin/mkdir -p '/gnu/store/r3vawx7xnp5zmkg7ins4bfssngw3k8gi-trf-4.09.1/share/doc/trf' /gnu/store/yixhh3q2i1x8pqpfq9nz83p15svg698m-coreutils-8.32/bin/install -c -m 644 README.md '/gnu/store/r3vawx7xnp5zmkg7ins4bfssngw3k8gi-trf-4.09.1/share/doc/trf' make[2]: Leaving directory '/tmp/guix-build-trf-4.09.1.drv-0/source' make[1]: Leaving directory '/tmp/guix-build-trf-4.09.1.drv-0/source' phase `install' succeeded after 0.1 seconds starting phase `patch-shebangs' phase `patch-shebangs' succeeded after 0.0 seconds starting phase `strip' stripping binaries in "/gnu/store/r3vawx7xnp5zmkg7ins4bfssngw3k8gi-trf-4.09.1/bin" with "strip" and flags ("--strip-unneeded" "--enable-deterministic-archives") phase `strip' succeeded after 0.0 seconds starting phase `validate-runpath' validating RUNPATH of 1 binaries in "/gnu/store/r3vawx7xnp5zmkg7ins4bfssngw3k8gi-trf-4.09.1/bin"... phase `validate-runpath' succeeded after 0.0 seconds starting phase `validate-documentation-location' phase `validate-documentation-location' succeeded after 0.0 seconds starting phase `delete-info-dir-file' phase `delete-info-dir-file' succeeded after 0.0 seconds starting phase `patch-dot-desktop-files' phase `patch-dot-desktop-files' succeeded after 0.0 seconds starting phase `make-dynamic-linker-cache' created '/gnu/store/r3vawx7xnp5zmkg7ins4bfssngw3k8gi-trf-4.09.1/etc/ld.so.cache' from 3 library search path entries phase `make-dynamic-linker-cache' succeeded after 0.1 seconds starting phase `install-license-files' installing 1 license files from '.' phase `install-license-files' succeeded after 0.0 seconds starting phase `reset-gzip-timestamps' phase `reset-gzip-timestamps' succeeded after 0.0 seconds starting phase `compress-documentation' phase `compress-documentation' succeeded after 0.0 seconds