starting phase `set-SOURCE-DATE-EPOCH' phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds starting phase `set-paths' environment variable `PATH' set to `/gnu/store/73fwa5gfl3722h6j0hbbcilxamq62xb0-cpio-2.13/bin:/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/bin:/gnu/store/49jr762z5sqw1p698bf4y3g6xl75nimz-lmdb-0.9.29/bin:/gnu/store/lj75fc25zx2y9pqvfp95la84rdhlj4f8-perl-5.36.0/bin:/gnu/store/l6fpy0i9hlll9b6k8vy2i2a4cshwz3cv-python-wrapper-3.10.7/bin:/gnu/store/sxx22f98vfbavcqmdksm6as8fvskpxiw-tar-1.34/bin:/gnu/store/x24bm49ag5dvki72mjdz195bfb89nrnb-gzip-1.12/bin:/gnu/store/j8wlfmlmfvpbza6is9wv9xsd8psrxn00-bzip2-1.0.8/bin:/gnu/store/gr0sy0m1mv36qv54idm6cn10l3mngshq-file-5.44/bin:/gnu/store/zmcf5kpqiighkbh7wslf91qdjwj06yr1-diffutils-3.8/bin:/gnu/store/210yfax18r2g2inxrml9435ikhfcca6m-patch-2.7.6/bin:/gnu/store/c8jyph2lxw0m9na34fg8h70n4nnnz7is-findutils-4.9.0/bin:/gnu/store/hc05d76f1j3iz3v2bs5jz4fpljl1r4dj-gawk-5.2.1/bin:/gnu/store/xxcfsimvxz7z4dj593gnqbkzc6picwzq-sed-4.8/bin:/gnu/store/yrv5f70mn83a876b78i5s79dd2hsh0zf-grep-3.8/bin:/gnu/store/6k1yys9wqrfn4y41ic1win8gpnimncwj-xz-5.2.8/bin:/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin:/gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin:/gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin:/gnu/store/na1dpbbcxjaa3n8wkwrfpch476f90hlf-ld-wrapper-0/bin:/gnu/store/zh4x65snfis7svs6906gj1z8i7dx2j3m-binutils-2.38/bin:/gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin:/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/bin:/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/sbin:/gnu/store/dy3xh053ahkhrp2jamggq8cpsyvp8mg0-python-3.10.7/bin' environment variable `PERL5LIB' set to `/gnu/store/lj75fc25zx2y9pqvfp95la84rdhlj4f8-perl-5.36.0/lib/perl5/site_perl' environment variable `GUIX_PYTHONPATH' set to `/gnu/store/dy3xh053ahkhrp2jamggq8cpsyvp8mg0-python-3.10.7/lib/python3.10/site-packages' environment variable `PYTHONTZPATH' unset environment variable `BASH_LOADABLES_PATH' unset environment variable `C_INCLUDE_PATH' set to `/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include:/gnu/store/49jr762z5sqw1p698bf4y3g6xl75nimz-lmdb-0.9.29/include:/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include:/gnu/store/fxspvmsmypn6g74mx3dc58qmh16n90vj-pcre-8.45/include:/gnu/store/j8wlfmlmfvpbza6is9wv9xsd8psrxn00-bzip2-1.0.8/include:/gnu/store/gr0sy0m1mv36qv54idm6cn10l3mngshq-file-5.44/include:/gnu/store/hc05d76f1j3iz3v2bs5jz4fpljl1r4dj-gawk-5.2.1/include:/gnu/store/6k1yys9wqrfn4y41ic1win8gpnimncwj-xz-5.2.8/include:/gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/include:/gnu/store/zh4x65snfis7svs6906gj1z8i7dx2j3m-binutils-2.38/include:/gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include:/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/include:/gnu/store/dy3xh053ahkhrp2jamggq8cpsyvp8mg0-python-3.10.7/include:/gnu/store/5iklcps70c0sfkxvlrhg8jhf3q4h18bj-linux-libre-headers-5.15.49/include' environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include:/gnu/store/49jr762z5sqw1p698bf4y3g6xl75nimz-lmdb-0.9.29/include:/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include:/gnu/store/fxspvmsmypn6g74mx3dc58qmh16n90vj-pcre-8.45/include:/gnu/store/j8wlfmlmfvpbza6is9wv9xsd8psrxn00-bzip2-1.0.8/include:/gnu/store/gr0sy0m1mv36qv54idm6cn10l3mngshq-file-5.44/include:/gnu/store/hc05d76f1j3iz3v2bs5jz4fpljl1r4dj-gawk-5.2.1/include:/gnu/store/6k1yys9wqrfn4y41ic1win8gpnimncwj-xz-5.2.8/include:/gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/include:/gnu/store/zh4x65snfis7svs6906gj1z8i7dx2j3m-binutils-2.38/include:/gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++:/gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include:/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/include:/gnu/store/dy3xh053ahkhrp2jamggq8cpsyvp8mg0-python-3.10.7/include:/gnu/store/5iklcps70c0sfkxvlrhg8jhf3q4h18bj-linux-libre-headers-5.15.49/include' environment variable `LIBRARY_PATH' set to `/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib:/gnu/store/49jr762z5sqw1p698bf4y3g6xl75nimz-lmdb-0.9.29/lib:/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib:/gnu/store/fxspvmsmypn6g74mx3dc58qmh16n90vj-pcre-8.45/lib:/gnu/store/lj75fc25zx2y9pqvfp95la84rdhlj4f8-perl-5.36.0/lib:/gnu/store/j8wlfmlmfvpbza6is9wv9xsd8psrxn00-bzip2-1.0.8/lib:/gnu/store/gr0sy0m1mv36qv54idm6cn10l3mngshq-file-5.44/lib:/gnu/store/hc05d76f1j3iz3v2bs5jz4fpljl1r4dj-gawk-5.2.1/lib:/gnu/store/6k1yys9wqrfn4y41ic1win8gpnimncwj-xz-5.2.8/lib:/gnu/store/zh4x65snfis7svs6906gj1z8i7dx2j3m-binutils-2.38/lib:/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/lib:/gnu/store/l0yryi5jsa1grnvw01c9nkz9c81cv224-glibc-2.35-static/lib:/gnu/store/visfdda934gvivwihwhlm63fdqhhcc8a-glibc-utf8-locales-2.35/lib:/gnu/store/dy3xh053ahkhrp2jamggq8cpsyvp8mg0-python-3.10.7/lib' environment variable `GUIX_LOCPATH' set to `/gnu/store/visfdda934gvivwihwhlm63fdqhhcc8a-glibc-utf8-locales-2.35/lib/locale' phase `set-paths' succeeded after 0.0 seconds starting phase `install-locale' using 'en_US.utf8' locale for category "LC_ALL" phase `install-locale' succeeded after 0.0 seconds starting phase `unpack' ncbi-blast-2.11.0+-src/ ncbi-blast-2.11.0+-src/c++/ ncbi-blast-2.11.0+-src/c++/compilers/ ncbi-blast-2.11.0+-src/c++/compilers/cygwin/ ncbi-blast-2.11.0+-src/c++/compilers/cygwin/build.sh ncbi-blast-2.11.0+-src/c++/compilers/cygwin/check.sh ncbi-blast-2.11.0+-src/c++/compilers/unix/ ncbi-blast-2.11.0+-src/c++/compilers/unix/Clang.sh ncbi-blast-2.11.0+-src/c++/compilers/unix/GCC.sh ncbi-blast-2.11.0+-src/c++/compilers/unix/ICC.sh ncbi-blast-2.11.0+-src/c++/compilers/unix/LLVM-GCC.sh ncbi-blast-2.11.0+-src/c++/compilers/unix/Xcode.sh ncbi-blast-2.11.0+-src/c++/compilers/unix/cxx_filter.ICC.sh ncbi-blast-2.11.0+-src/c++/compilers/vs2015/ ncbi-blast-2.11.0+-src/c++/compilers/vs2015/Makefile.WinMain.app.msvc ncbi-blast-2.11.0+-src/c++/compilers/vs2015/Makefile.wxWidgets.app.msvc 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ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/ ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/aa_ungapped.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_aalookup.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_aascan.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_def.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_diagnostics.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_encoding.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_engine.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_export.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_extend.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_filter.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_gapalign.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_hits.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_hspfilter.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_hspstream.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_kappa.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_lookup.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_message.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_nalookup.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_nascan.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_options.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_parameters.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_program.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_psi.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_query_info.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_rps.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_seg.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_seqsrc.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_seqsrc_impl.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_setup.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_stat.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_sw.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_toolkit.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_traceback.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_tune.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/blast_util.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/gapinfo.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/gencode_singleton.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/greedy_align.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/hspfilter_besthit.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/hspfilter_collector.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/hspfilter_culling.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/hspfilter_mapper.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/link_hsps.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/lookup_util.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/lookup_wrap.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/mb_indexed_lookup.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/na_ungapped.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/ncbi_math.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/ncbi_std.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/pattern.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/phi_extend.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/phi_gapalign.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/phi_lookup.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/spliced_hits.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/core/split_query.h ncbi-blast-2.11.0+-src/c++/include/algo/blast/dbindex/ ncbi-blast-2.11.0+-src/c++/include/algo/blast/dbindex/dbindex.hpp ncbi-blast-2.11.0+-src/c++/include/algo/blast/dbindex/dbindex_sp.hpp ncbi-blast-2.11.0+-src/c++/include/algo/blast/dbindex/sequence_istream.hpp ncbi-blast-2.11.0+-src/c++/include/algo/blast/dbindex/sequence_istream_bdb.hpp ncbi-blast-2.11.0+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/ ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastxml2_format.hpp ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastxml_format.hpp ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/build_archive.hpp ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xml2format.hpp ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/sam.hpp ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/vecscreen_run.hpp ncbi-blast-2.11.0+-src/c++/include/algo/blast/igblast/ ncbi-blast-2.11.0+-src/c++/include/algo/blast/igblast/igblast.hpp ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/ ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmer.hpp ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmeroptions.hpp ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/kblastapi.hpp ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/mhfile.hpp ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/ ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/sdust.tex ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp ncbi-blast-2.11.0+-src/c++/include/algo/segmask/ ncbi-blast-2.11.0+-src/c++/include/algo/segmask/segmask.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/ ncbi-blast-2.11.0+-src/c++/include/algo/winmask/README.API ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_cache_boost.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_ascii.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_bin.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_factory.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_oascii.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_obinary.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_ostat.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_ostat_ascii.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_ostat_bin.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_ostat_factory.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_ostat_opt.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_ostat_opt_ascii.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_ostat_opt_bin.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_score.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_score_mean.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_score_min.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_uset_array.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_uset_hash.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_uset_simple.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_util.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_version.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window_ambig.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window_pattern.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_config.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_counts_converter.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_dup_table.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_gen_counts.hpp ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_util.hpp ncbi-blast-2.11.0+-src/c++/include/cgi/ ncbi-blast-2.11.0+-src/c++/include/cgi/caf.hpp ncbi-blast-2.11.0+-src/c++/include/cgi/cgi_exception.hpp ncbi-blast-2.11.0+-src/c++/include/cgi/cgi_serial.hpp ncbi-blast-2.11.0+-src/c++/include/cgi/cgi_session.hpp ncbi-blast-2.11.0+-src/c++/include/cgi/cgi_util.hpp ncbi-blast-2.11.0+-src/c++/include/cgi/cgiapp.hpp ncbi-blast-2.11.0+-src/c++/include/cgi/cgiapp_cached.hpp ncbi-blast-2.11.0+-src/c++/include/cgi/cgictx.hpp ncbi-blast-2.11.0+-src/c++/include/cgi/error_codes.hpp ncbi-blast-2.11.0+-src/c++/include/cgi/impl/ ncbi-blast-2.11.0+-src/c++/include/cgi/impl/cgi_entry_reader.hpp ncbi-blast-2.11.0+-src/c++/include/cgi/ncbicgi.hpp ncbi-blast-2.11.0+-src/c++/include/cgi/ncbicgir.hpp ncbi-blast-2.11.0+-src/c++/include/cgi/ncbires.hpp ncbi-blast-2.11.0+-src/c++/include/cgi/ref_args.hpp ncbi-blast-2.11.0+-src/c++/include/cgi/user_agent.hpp ncbi-blast-2.11.0+-src/c++/include/common/ ncbi-blast-2.11.0+-src/c++/include/common/boost_skew_guard.hpp ncbi-blast-2.11.0+-src/c++/include/common/config/ ncbi-blast-2.11.0+-src/c++/include/common/config/ncbiconf_msvc.h ncbi-blast-2.11.0+-src/c++/include/common/config/ncbiconf_msvc_site.h.in ncbi-blast-2.11.0+-src/c++/include/common/config/ncbiconf_universal.h ncbi-blast-2.11.0+-src/c++/include/common/config/ncbiconf_xcode.h ncbi-blast-2.11.0+-src/c++/include/common/header_template.hpp ncbi-blast-2.11.0+-src/c++/include/common/metamodules_doxygen.h ncbi-blast-2.11.0+-src/c++/include/common/ncbi_build_info.h ncbi-blast-2.11.0+-src/c++/include/common/ncbi_build_ver.h.in ncbi-blast-2.11.0+-src/c++/include/common/ncbi_export.h ncbi-blast-2.11.0+-src/c++/include/common/ncbi_package_ver.h ncbi-blast-2.11.0+-src/c++/include/common/ncbi_pch_impl.hpp ncbi-blast-2.11.0+-src/c++/include/common/ncbi_revision.h.in ncbi-blast-2.11.0+-src/c++/include/common/ncbi_skew_guard.h ncbi-blast-2.11.0+-src/c++/include/common/ncbi_source_ver.cmake_nodep ncbi-blast-2.11.0+-src/c++/include/common/ncbi_source_ver.h ncbi-blast-2.11.0+-src/c++/include/common/ncbiconf_impl.h ncbi-blast-2.11.0+-src/c++/include/common/test_assert.h ncbi-blast-2.11.0+-src/c++/include/common/test_assert_impl.h ncbi-blast-2.11.0+-src/c++/include/common/test_data_path.h ncbi-blast-2.11.0+-src/c++/include/connect/ ncbi-blast-2.11.0+-src/c++/include/connect/connect_export.h ncbi-blast-2.11.0+-src/c++/include/connect/email_diag_handler.hpp ncbi-blast-2.11.0+-src/c++/include/connect/error_codes.hpp ncbi-blast-2.11.0+-src/c++/include/connect/impl/ ncbi-blast-2.11.0+-src/c++/include/connect/impl/server_connection.hpp ncbi-blast-2.11.0+-src/c++/include/connect/impl/thread_pool_for_server.hpp ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_base64.h ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_blowfish.h ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_buffer.h ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_conn_exception.hpp ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_conn_reader_writer.hpp ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_conn_stream.hpp ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_conn_test.hpp ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_connection.h ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_connector.h ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_connutil.h ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_core.h ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_core_cxx.hpp ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_file_connector.h ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_ftp_connector.h ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_gnutls.h ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_heapmgr.h ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_host_info.h ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_connector.h ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_iprange.h ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_ipv6.h ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_lbos.hpp ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_localip.h ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_localip.hpp ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_mbedtls.h ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_memory_connector.h ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_misc.hpp ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_monkey.hpp ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_namedpipe.hpp ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_namedpipe_connector.hpp ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_pipe.hpp ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_pipe_connector.hpp ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_sendmail.h ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_server_info.h ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_service.h ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_service.hpp ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_service_connector.h ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_service_cxx.hpp ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_socket.h ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_socket.hpp ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_socket_connector.h ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_socket_unix.h ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_socket_unix.hpp ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_tls.h ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_types.h ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_userhost.hpp ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_util.h ncbi-blast-2.11.0+-src/c++/include/connect/server.hpp ncbi-blast-2.11.0+-src/c++/include/connect/server_monitor.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/ ncbi-blast-2.11.0+-src/c++/include/connect/services/blob_storage_netcache.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/clparser.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/compound_id.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/error_codes.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/grid_app_version_info.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/grid_client.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/grid_client_app.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/grid_globals.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/grid_rw_impl.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/grid_worker.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/grid_worker_app.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/impl/ ncbi-blast-2.11.0+-src/c++/include/connect/services/impl/netcache_api_int.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/impl/neticache_client_int.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/impl/netschedule_api_int.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/impl/netstorage_impl.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/impl/netstorage_int.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/json_over_uttp.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/named_parameters.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/netcache_admin.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/netcache_api.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/netcache_api_expt.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/netcache_key.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/netcache_search.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/netcomponent.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/neticache_client.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/netschedule_api.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/netschedule_api_expt.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/netschedule_key.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/netservice_api.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/netservice_api_expt.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/netservice_protocol_parser.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/netstorage.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/netstorage_ft.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/ns_client_factory.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/ns_job_serializer.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/ns_output_parser.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/remote_app.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/srv_connections.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/srv_connections_expt.hpp ncbi-blast-2.11.0+-src/c++/include/connect/services/util.hpp ncbi-blast-2.11.0+-src/c++/include/connect/threaded_server.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/ ncbi-blast-2.11.0+-src/c++/include/corelib/blob_storage.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/ddumpable.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/env_reg.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/error_codes.hpp 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ncbi-blast-2.11.0+-src/c++/include/corelib/ncbienv.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/ncbierror.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexec.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/ncbifile.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/ncbifloat.h ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimempool.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.inl ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/ncbireg.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr_util.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/ncbisys.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitype.h ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiutil.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/obj_pool.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/obj_store.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/perf_log.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/plugin_manager.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/plugin_manager_impl.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/plugin_manager_store.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/reader_writer.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/request_control.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/request_ctx.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/request_status.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/resource_info.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/rwstream.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/stream_utils.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/syslog.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/teamcity_messages.h ncbi-blast-2.11.0+-src/c++/include/corelib/tempstr.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/test_boost.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/test_mt.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/version.hpp ncbi-blast-2.11.0+-src/c++/include/corelib/version_api.hpp ncbi-blast-2.11.0+-src/c++/include/db/ ncbi-blast-2.11.0+-src/c++/include/db/error_codes.hpp ncbi-blast-2.11.0+-src/c++/include/db/sqlite/ ncbi-blast-2.11.0+-src/c++/include/db/sqlite/sqlitewrapp.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/ ncbi-blast-2.11.0+-src/c++/include/dbapi/cache/ ncbi-blast-2.11.0+-src/c++/include/dbapi/cache/dbapi_blob_cache.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/dbapi.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/dbapi_variant_convert.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/ ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_conn_factory.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_conn_mgr.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_conn_params.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_object_convert.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_svc_mapper.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/driver_mgr.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/drivers.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/exception.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/impl/ ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/impl/dbapi_driver_utils.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/impl/dbapi_impl_cmd.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/impl/dbapi_impl_connection.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/impl/dbapi_impl_context.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/impl/dbapi_impl_result.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/impl/dbapi_pool_balancer.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/impl/handle_stack.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/interfaces.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/odbc/ ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/odbc/interfaces.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/odbc/unix_odbc/ ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/odbc/unix_odbc/odbcinst.h ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/odbc/unix_odbc/sql.h ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/odbc/unix_odbc/sqlext.h ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/odbc/unix_odbc/sqlfront.h ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/odbc/unix_odbc/sqlspi.h ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/odbc/unix_odbc/sqltypes.h ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/odbc/unix_odbc/sqlucode.h ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/odbc/unix_odbc/unixodbc_conf.h ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/public.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/types.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/util/ ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/util/blobstore.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/util/numeric_convert.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/util/parameters.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/util/pointer_pot.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/driver_mgr.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/error_codes.hpp ncbi-blast-2.11.0+-src/c++/include/dbapi/variant.hpp ncbi-blast-2.11.0+-src/c++/include/html/ ncbi-blast-2.11.0+-src/c++/include/html/commentdiag.hpp ncbi-blast-2.11.0+-src/c++/include/html/components.hpp 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ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson10/filewritestream.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson10/internal/ ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson10/internal/biginteger.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson10/internal/diyfp.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson10/internal/dtoa.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson10/internal/ieee754.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson10/internal/itoa.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson10/internal/meta.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson10/internal/pow10.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson10/internal/stack.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson10/internal/strfunc.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson10/internal/strtod.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson10/license.txt ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson10/memorybuffer.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson10/memorystream.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson10/msinttypes/ ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson10/msinttypes/inttypes.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson10/msinttypes/stdint.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson10/pointer.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson10/prettywriter.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson10/rapidjson.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson10/reader.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson10/stringbuffer.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson10/writer.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/ ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/__NCBI_read_me.txt ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/allocators.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/encodedstream.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/encodings.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/error/ ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/error/en.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/error/error.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/filereadstream.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/filewritestream.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/fwd.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/internal/ ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/internal/biginteger.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/internal/diyfp.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/internal/dtoa.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/internal/ieee754.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/internal/itoa.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/internal/meta.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/internal/pow10.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/internal/regex.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/internal/stack.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/internal/strfunc.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/internal/strtod.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/internal/swap.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/istreamwrapper.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/license.txt ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/memorybuffer.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/memorystream.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/msinttypes/ ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/msinttypes/inttypes.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/msinttypes/stdint.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/ostreamwrapper.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/pointer.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/prettywriter.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/rapidjson.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/reader.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/schema.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/stream.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/stringbuffer.h ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/writer.h ncbi-blast-2.11.0+-src/c++/include/ncbi_pch.hpp ncbi-blast-2.11.0+-src/c++/include/ncbi_source_ver.h ncbi-blast-2.11.0+-src/c++/include/ncbiconf.h ncbi-blast-2.11.0+-src/c++/include/objects/ ncbi-blast-2.11.0+-src/c++/include/objects/biblio/ ncbi-blast-2.11.0+-src/c++/include/objects/biblio/Affil.hpp ncbi-blast-2.11.0+-src/c++/include/objects/biblio/Auth_list.hpp ncbi-blast-2.11.0+-src/c++/include/objects/biblio/Author.hpp ncbi-blast-2.11.0+-src/c++/include/objects/biblio/Cit_art.hpp ncbi-blast-2.11.0+-src/c++/include/objects/biblio/Cit_book.hpp ncbi-blast-2.11.0+-src/c++/include/objects/biblio/Cit_gen.hpp ncbi-blast-2.11.0+-src/c++/include/objects/biblio/Cit_jour.hpp ncbi-blast-2.11.0+-src/c++/include/objects/biblio/Cit_let.hpp ncbi-blast-2.11.0+-src/c++/include/objects/biblio/Cit_pat.hpp ncbi-blast-2.11.0+-src/c++/include/objects/biblio/Cit_proc.hpp ncbi-blast-2.11.0+-src/c++/include/objects/biblio/Cit_sub.hpp ncbi-blast-2.11.0+-src/c++/include/objects/biblio/Id_pat.hpp ncbi-blast-2.11.0+-src/c++/include/objects/biblio/MedlineUID.hpp ncbi-blast-2.11.0+-src/c++/include/objects/biblio/PmcID.hpp ncbi-blast-2.11.0+-src/c++/include/objects/biblio/PubMedId.hpp ncbi-blast-2.11.0+-src/c++/include/objects/biblio/Title.hpp ncbi-blast-2.11.0+-src/c++/include/objects/biblio/biblio_macros.hpp ncbi-blast-2.11.0+-src/c++/include/objects/biblio/citation_base.hpp ncbi-blast-2.11.0+-src/c++/include/objects/biotree/ ncbi-blast-2.11.0+-src/c++/include/objects/biotree/BioTreeContainer.hpp ncbi-blast-2.11.0+-src/c++/include/objects/biotree/DistanceMatrix.hpp ncbi-blast-2.11.0+-src/c++/include/objects/blast/ ncbi-blast-2.11.0+-src/c++/include/objects/blast/.cvsignore.extra ncbi-blast-2.11.0+-src/c++/include/objects/blast/Blast4_database.hpp ncbi-blast-2.11.0+-src/c++/include/objects/blast/Blast4_parameters.hpp ncbi-blast-2.11.0+-src/c++/include/objects/blast/Blast4_queries.hpp ncbi-blast-2.11.0+-src/c++/include/objects/blast/Blast4_range.hpp ncbi-blast-2.11.0+-src/c++/include/objects/blast/names.hpp ncbi-blast-2.11.0+-src/c++/include/objects/blastdb/ ncbi-blast-2.11.0+-src/c++/include/objects/blastdb/Blast_def_line.hpp ncbi-blast-2.11.0+-src/c++/include/objects/blastdb/Blast_def_line_set.hpp ncbi-blast-2.11.0+-src/c++/include/objects/blastdb/defline_extra.hpp ncbi-blast-2.11.0+-src/c++/include/objects/cdd/ ncbi-blast-2.11.0+-src/c++/include/objects/cdd/Cdd.hpp ncbi-blast-2.11.0+-src/c++/include/objects/dbsnp/ ncbi-blast-2.11.0+-src/c++/include/objects/dbsnp/primary_track/ ncbi-blast-2.11.0+-src/c++/include/objects/dbsnp/primary_track/impl/ ncbi-blast-2.11.0+-src/c++/include/objects/dbsnp/primary_track/impl/snpptis_impl.hpp ncbi-blast-2.11.0+-src/c++/include/objects/dbsnp/primary_track/snpptis.hpp ncbi-blast-2.11.0+-src/c++/include/objects/entrez2/ ncbi-blast-2.11.0+-src/c++/include/objects/entrez2/.cvsignore.extra ncbi-blast-2.11.0+-src/c++/include/objects/entrez2/Entrez2_docsum.hpp ncbi-blast-2.11.0+-src/c++/include/objects/entrez2/Entrez2_id_list.hpp ncbi-blast-2.11.0+-src/c++/include/objects/entrez2/entrez2_client.hpp ncbi-blast-2.11.0+-src/c++/include/objects/entrezgene/ ncbi-blast-2.11.0+-src/c++/include/objects/entrezgene/Entrezgene.hpp ncbi-blast-2.11.0+-src/c++/include/objects/entrezgene/Gene_commentary.hpp ncbi-blast-2.11.0+-src/c++/include/objects/gbproj/ ncbi-blast-2.11.0+-src/c++/include/objects/gbproj/AbstractProjectItem.hpp ncbi-blast-2.11.0+-src/c++/include/objects/gbproj/FolderInfo.hpp ncbi-blast-2.11.0+-src/c++/include/objects/gbproj/GBProject_ver2.hpp ncbi-blast-2.11.0+-src/c++/include/objects/gbproj/ProjectDescr.hpp ncbi-blast-2.11.0+-src/c++/include/objects/gbproj/ProjectFolder.hpp ncbi-blast-2.11.0+-src/c++/include/objects/gbproj/ProjectItem.hpp ncbi-blast-2.11.0+-src/c++/include/objects/gbproj/gbproj_export.h ncbi-blast-2.11.0+-src/c++/include/objects/gbproj/igbproject.hpp ncbi-blast-2.11.0+-src/c++/include/objects/general/ ncbi-blast-2.11.0+-src/c++/include/objects/general/Date.hpp ncbi-blast-2.11.0+-src/c++/include/objects/general/Date_std.hpp ncbi-blast-2.11.0+-src/c++/include/objects/general/Dbtag.hpp ncbi-blast-2.11.0+-src/c++/include/objects/general/Int_fuzz.hpp ncbi-blast-2.11.0+-src/c++/include/objects/general/Name_std.hpp ncbi-blast-2.11.0+-src/c++/include/objects/general/Object_id.hpp ncbi-blast-2.11.0+-src/c++/include/objects/general/Person_id.hpp ncbi-blast-2.11.0+-src/c++/include/objects/general/User_field.hpp ncbi-blast-2.11.0+-src/c++/include/objects/general/User_object.hpp ncbi-blast-2.11.0+-src/c++/include/objects/general/general_exception.hpp ncbi-blast-2.11.0+-src/c++/include/objects/general/general_macros.hpp ncbi-blast-2.11.0+-src/c++/include/objects/general/uoconv.hpp ncbi-blast-2.11.0+-src/c++/include/objects/genomecoll/ ncbi-blast-2.11.0+-src/c++/include/objects/genomecoll/.cvsignore.extra ncbi-blast-2.11.0+-src/c++/include/objects/genomecoll/GCClient_GetAssemblyBySequ.hpp ncbi-blast-2.11.0+-src/c++/include/objects/genomecoll/GC_Assembly.hpp ncbi-blast-2.11.0+-src/c++/include/objects/genomecoll/GC_AssemblySet.hpp ncbi-blast-2.11.0+-src/c++/include/objects/genomecoll/GC_AssemblyUnit.hpp ncbi-blast-2.11.0+-src/c++/include/objects/genomecoll/GC_Replicon.hpp ncbi-blast-2.11.0+-src/c++/include/objects/genomecoll/GC_SeqIdAlias.hpp ncbi-blast-2.11.0+-src/c++/include/objects/genomecoll/GC_Sequence.hpp ncbi-blast-2.11.0+-src/c++/include/objects/genomecoll/cached_assembly.hpp ncbi-blast-2.11.0+-src/c++/include/objects/genomecoll/genomic_collections_cli.hpp ncbi-blast-2.11.0+-src/c++/include/objects/homologene/ ncbi-blast-2.11.0+-src/c++/include/objects/homologene/HG_Entry.hpp ncbi-blast-2.11.0+-src/c++/include/objects/homologene/HG_Gene.hpp ncbi-blast-2.11.0+-src/c++/include/objects/id1/ ncbi-blast-2.11.0+-src/c++/include/objects/id1/.cvsignore.extra ncbi-blast-2.11.0+-src/c++/include/objects/id1/ID1server_back.hpp ncbi-blast-2.11.0+-src/c++/include/objects/id1/id1_client.hpp ncbi-blast-2.11.0+-src/c++/include/objects/id2/ ncbi-blast-2.11.0+-src/c++/include/objects/id2/ID2_Reply_Data.hpp ncbi-blast-2.11.0+-src/c++/include/objects/id2/id2_client.hpp ncbi-blast-2.11.0+-src/c++/include/objects/id2/id2processor.hpp ncbi-blast-2.11.0+-src/c++/include/objects/id2/id2processor_interface.hpp ncbi-blast-2.11.0+-src/c++/include/objects/macro/ ncbi-blast-2.11.0+-src/c++/include/objects/macro/Constraint_choice.hpp ncbi-blast-2.11.0+-src/c++/include/objects/macro/Constraint_choice_set.hpp ncbi-blast-2.11.0+-src/c++/include/objects/macro/Feat_qual_choice.hpp ncbi-blast-2.11.0+-src/c++/include/objects/macro/Feature_field.hpp ncbi-blast-2.11.0+-src/c++/include/objects/macro/Field_constraint.hpp ncbi-blast-2.11.0+-src/c++/include/objects/macro/Field_type.hpp ncbi-blast-2.11.0+-src/c++/include/objects/macro/Location_constraint.hpp ncbi-blast-2.11.0+-src/c++/include/objects/macro/Location_pos_constraint.hpp ncbi-blast-2.11.0+-src/c++/include/objects/macro/Molinfo_field.hpp ncbi-blast-2.11.0+-src/c++/include/objects/macro/Replace_func.hpp ncbi-blast-2.11.0+-src/c++/include/objects/macro/Replace_rule.hpp ncbi-blast-2.11.0+-src/c++/include/objects/macro/Rna_feat_type.hpp ncbi-blast-2.11.0+-src/c++/include/objects/macro/Rna_qual.hpp ncbi-blast-2.11.0+-src/c++/include/objects/macro/Search_func.hpp ncbi-blast-2.11.0+-src/c++/include/objects/macro/Simple_replace.hpp ncbi-blast-2.11.0+-src/c++/include/objects/macro/Source_qual_choice.hpp ncbi-blast-2.11.0+-src/c++/include/objects/macro/String_constraint.hpp ncbi-blast-2.11.0+-src/c++/include/objects/macro/Suspect_rule.hpp ncbi-blast-2.11.0+-src/c++/include/objects/macro/Suspect_rule_set.hpp ncbi-blast-2.11.0+-src/c++/include/objects/macro/Word_substitution.hpp ncbi-blast-2.11.0+-src/c++/include/objects/medline/ ncbi-blast-2.11.0+-src/c++/include/objects/medline/Medline_entry.hpp ncbi-blast-2.11.0+-src/c++/include/objects/misc/ ncbi-blast-2.11.0+-src/c++/include/objects/misc/error_codes.hpp ncbi-blast-2.11.0+-src/c++/include/objects/misc/sequence_macros.hpp ncbi-blast-2.11.0+-src/c++/include/objects/misc/sequence_util_macros.hpp ncbi-blast-2.11.0+-src/c++/include/objects/mla/ ncbi-blast-2.11.0+-src/c++/include/objects/mla/.cvsignore.extra ncbi-blast-2.11.0+-src/c++/include/objects/mla/Error_val.hpp ncbi-blast-2.11.0+-src/c++/include/objects/mla/mla_client.hpp ncbi-blast-2.11.0+-src/c++/include/objects/mmdb1/ ncbi-blast-2.11.0+-src/c++/include/objects/mmdb1/Biostruc.hpp ncbi-blast-2.11.0+-src/c++/include/objects/ncbimime/ ncbi-blast-2.11.0+-src/c++/include/objects/ncbimime/Ncbi_mime_asn1.hpp ncbi-blast-2.11.0+-src/c++/include/objects/omssa/ ncbi-blast-2.11.0+-src/c++/include/objects/omssa/MSBioseqSet.hpp ncbi-blast-2.11.0+-src/c++/include/objects/omssa/MSEnzymes.hpp ncbi-blast-2.11.0+-src/c++/include/objects/omssa/MSHits.hpp ncbi-blast-2.11.0+-src/c++/include/objects/omssa/MSIonType.hpp ncbi-blast-2.11.0+-src/c++/include/objects/omssa/MSMod.hpp ncbi-blast-2.11.0+-src/c++/include/objects/omssa/MSModSpecSet.hpp ncbi-blast-2.11.0+-src/c++/include/objects/omssa/MSRequest.hpp ncbi-blast-2.11.0+-src/c++/include/objects/omssa/MSResponse.hpp ncbi-blast-2.11.0+-src/c++/include/objects/omssa/MSSearch.hpp ncbi-blast-2.11.0+-src/c++/include/objects/omssa/MSSearchSettings.hpp ncbi-blast-2.11.0+-src/c++/include/objects/omssa/MSSearchType.hpp ncbi-blast-2.11.0+-src/c++/include/objects/pub/ ncbi-blast-2.11.0+-src/c++/include/objects/pub/Pub.hpp ncbi-blast-2.11.0+-src/c++/include/objects/pub/Pub_equiv.hpp ncbi-blast-2.11.0+-src/c++/include/objects/pub/Pub_set.hpp ncbi-blast-2.11.0+-src/c++/include/objects/pub/pub_macros.hpp ncbi-blast-2.11.0+-src/c++/include/objects/remap/ ncbi-blast-2.11.0+-src/c++/include/objects/remap/.cvsignore.extra ncbi-blast-2.11.0+-src/c++/include/objects/remap/remap_client.hpp ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/ ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/FormatRpsDbParameters.hpp ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/Pssm.hpp ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seq/ ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seq/Delta_ext.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seq/Linkage_evidence.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seq/MolInfo.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seq/Pubdesc.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_data.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_descr.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_gap.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_inst.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_literal.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seqdesc.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seq/annot_mapper_exception.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_align_mapper_base.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_id_handle.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_id_mapper.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_loc_from_string.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_loc_mapper_base.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_loc_reverse_complementer.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_macros.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seq/seqlocinfo.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seq/seqport_util.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seq/so_map.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seq/sofa_map.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seq/sofa_type.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/ ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_diag.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Product_pos.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Prot_pos.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Score.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Seq_align.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Seq_align_set.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Sparse_align.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Sparse_seg.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Spliced_exon.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Spliced_seg.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Std_seg.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/seqalign_exception.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/seqalign_macros.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqblock/ ncbi-blast-2.11.0+-src/c++/include/objects/seqblock/GB_block.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqblock/seqblock_macros.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqedit/ ncbi-blast-2.11.0+-src/c++/include/objects/seqedit/SeqEdit_Cmd.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/ ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Delta_item.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Gb_qual.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Gene_ref.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Genetic_code.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Genetic_code_table.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/ISeq_feat.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Imp_feat.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/OrgMod.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/OrgName.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Org_ref.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/PCRPrimerSeq.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Prot_ref.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/RNA_gen.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/RNA_ref.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SeqFeatData.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Seq_feat.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Trna_ext.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/VariantProperties.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Variation_ref.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat_macros.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/ ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Na_strand.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/PDB_seq_id.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Packed_seqint.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Packed_seqpnt.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Patent_seq_id.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_bond.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_interval.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc_equiv.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc_mix.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_point.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Textseq_id.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/seqloc_macros.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqres/ ncbi-blast-2.11.0+-src/c++/include/objects/seqres/Seq_graph.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqset/ ncbi-blast-2.11.0+-src/c++/include/objects/seqset/Bioseq_set.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqset/Seq_entry.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqset/gb_release_file.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqset/seqset_exception.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqset/seqset_macros.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqtable/ ncbi-blast-2.11.0+-src/c++/include/objects/seqtable/BVector_data.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqtable/Scaled_int_multi_data.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqtable/Scaled_real_multi_data.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqtable/SeqTable_column.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqtable/SeqTable_column_info.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqtable/SeqTable_multi_data.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqtable/SeqTable_single_data.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqtable/SeqTable_sparse_index.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqtable/Seq_table.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqtable/impl/ ncbi-blast-2.11.0+-src/c++/include/objects/seqtable/impl/delta_cache.hpp ncbi-blast-2.11.0+-src/c++/include/objects/seqtable/seq_table_exception.hpp ncbi-blast-2.11.0+-src/c++/include/objects/submit/ ncbi-blast-2.11.0+-src/c++/include/objects/submit/Seq_submit.hpp ncbi-blast-2.11.0+-src/c++/include/objects/submit/submit_macros.hpp ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/ ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_error.hpp ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon2_data.hpp ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/local_taxon.hpp ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/ ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/T3Data.hpp ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/T3Error.hpp ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/cached_taxon3.hpp ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/itaxon3.hpp ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/taxon3.hpp ncbi-blast-2.11.0+-src/c++/include/objects/trackmgr/ ncbi-blast-2.11.0+-src/c++/include/objects/trackmgr/TMgr_AnnotCounts.hpp ncbi-blast-2.11.0+-src/c++/include/objects/trackmgr/TMgr_ClientInfo.hpp ncbi-blast-2.11.0+-src/c++/include/objects/trackmgr/TMgr_DTrackId.hpp ncbi-blast-2.11.0+-src/c++/include/objects/trackmgr/TMgr_DisplayTrackRequest.hpp ncbi-blast-2.11.0+-src/c++/include/objects/trackmgr/TMgr_IdentityId.hpp ncbi-blast-2.11.0+-src/c++/include/objects/trackmgr/TMgr_ItemResolverRequest.hpp ncbi-blast-2.11.0+-src/c++/include/objects/trackmgr/TMgr_LengthStats.hpp ncbi-blast-2.11.0+-src/c++/include/objects/trackmgr/TMgr_Message.hpp ncbi-blast-2.11.0+-src/c++/include/objects/trackmgr/TMgr_PositionStats.hpp ncbi-blast-2.11.0+-src/c++/include/objects/trackmgr/TMgr_Request.hpp ncbi-blast-2.11.0+-src/c++/include/objects/trackmgr/blast_client.hpp ncbi-blast-2.11.0+-src/c++/include/objects/trackmgr/createremotetrack_client.hpp ncbi-blast-2.11.0+-src/c++/include/objects/trackmgr/createtrackset_client.hpp ncbi-blast-2.11.0+-src/c++/include/objects/trackmgr/createusertrack_client.hpp ncbi-blast-2.11.0+-src/c++/include/objects/trackmgr/displaytrack_client.hpp ncbi-blast-2.11.0+-src/c++/include/objects/trackmgr/gridrpcclient.hpp ncbi-blast-2.11.0+-src/c++/include/objects/trackmgr/item_resolver_client.hpp ncbi-blast-2.11.0+-src/c++/include/objects/trackmgr/primary_snp.hpp ncbi-blast-2.11.0+-src/c++/include/objects/trackmgr/removeusertrack_client.hpp ncbi-blast-2.11.0+-src/c++/include/objects/trackmgr/supported_assemblies_client.hpp ncbi-blast-2.11.0+-src/c++/include/objects/trackmgr/switch_context_client.hpp ncbi-blast-2.11.0+-src/c++/include/objects/trackmgr/track_attrvalue_client.hpp ncbi-blast-2.11.0+-src/c++/include/objects/trackmgr/trackmgr_client.hpp ncbi-blast-2.11.0+-src/c++/include/objects/trackmgr/trackmgr_export.h ncbi-blast-2.11.0+-src/c++/include/objects/trackmgr/trackset_client.hpp ncbi-blast-2.11.0+-src/c++/include/objects/valerr/ ncbi-blast-2.11.0+-src/c++/include/objects/valerr/ValidErrItem.hpp ncbi-blast-2.11.0+-src/c++/include/objects/valerr/ValidError.hpp ncbi-blast-2.11.0+-src/c++/include/objects/valid/ ncbi-blast-2.11.0+-src/c++/include/objects/valid/Comment_rule.hpp ncbi-blast-2.11.0+-src/c++/include/objects/valid/Comment_set.hpp ncbi-blast-2.11.0+-src/c++/include/objects/valid/Dependent_field_rule.hpp ncbi-blast-2.11.0+-src/c++/include/objects/valid/Field_rule.hpp ncbi-blast-2.11.0+-src/c++/include/objects/variation/ ncbi-blast-2.11.0+-src/c++/include/objects/variation/Variation.hpp ncbi-blast-2.11.0+-src/c++/include/objects/varrep/ ncbi-blast-2.11.0+-src/c++/include/objects/varrep/AaInterval.hpp ncbi-blast-2.11.0+-src/c++/include/objects/varrep/AaLocation.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/ ncbi-blast-2.11.0+-src/c++/include/objmgr/align_ci.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_ci.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_name.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_selector.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_type_selector.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/bio_object_id.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_ci.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_set_handle.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/blob_id.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader_factory.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/edit_saver.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/edits_db_engine.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/edits_db_saver.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/error_codes.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/gc_assembly_parser.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/graph_ci.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/ ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_finder.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_object.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_object_index.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_type_index.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_base_info.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_edit_commands.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_info.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_set_info.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/handle_range.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/handle_range_map.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/heap_scope.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/mutex_pool.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/prefetch_impl.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/prefetch_manager_impl.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_info.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_align_mapper.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_annot_edit_commands.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_annot_info.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_entry_edit_commands.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_id_sort.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_loc_cvt.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_table_info.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_table_setter.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_table_setters.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_vector_cvt.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_vector_cvt_gcc_i386.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_vector_cvt_gen.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_info.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/split_parser.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/synonyms.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_assigner.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_chunk_info.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info_object.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_lock.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_scope_lock.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_split_info.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/objmgr_exception.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/objmgr_version.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/prefetch.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/prefetch_actions.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/prefetch_manager.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/scope_transaction.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_align_handle.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_annot_ci.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_annot_handle.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_descr_ci.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_entry_ci.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_entry_handle.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_graph_handle.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_loc_mapper.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_map.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_map_ci.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_map_switch.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_table_ci.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector_ci.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/seqdesc_ci.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/split/ ncbi-blast-2.11.0+-src/c++/include/objmgr/split/annot_piece.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/split/asn_sizer.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/split/blob_splitter.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/split/blob_splitter_params.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/split/chunk_info.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/split/id2_compress.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/split/id_range.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/split/object_splitinfo.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/split/place_id.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/split/size.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/split/split_blob.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/split/split_exceptions.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/table_field.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/tse_handle.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/unsupp_editsaver.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/util/ ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef_available_modifier.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef_feature_clause.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef_feature_clause_base.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef_mod_combo.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef_options.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef_source_desc.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef_source_group.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature_edit.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/util/obj_sniff.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/util/objutil.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/util/seq_align_util.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/util/seq_loc_util.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp ncbi-blast-2.11.0+-src/c++/include/objmgr/util/weight.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/ ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/ ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/aln_printer.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/format_flags.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/ilinkoutdb.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/seqalignfilter.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/taxFormat.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/vectorscreen.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/ ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_asn_reader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_builders.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_container.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_converters.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_generators.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_rng_coll_list_oper.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_rng_coll_oper.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_seqid.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_serial.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_stats.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_tests.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_user_options.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alndiag.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnexception.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmerger.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmix.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnpos_ci.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnseq.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alntext.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec_iterator.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/pairwise_aln.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/score_builder_base.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/seqid_comp.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/seqids_extractor.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/sparse_aln.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/sparse_ci.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/task_progress.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/ ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/ ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/ ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/file_utils.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/ ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/column_reader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/impl/ ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/impl/lmdb++.h ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbcol.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbfile.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbgeneral.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbisam.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbtax.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbblob.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqidlist_reader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/ ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/build_db.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/impl/ ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/impl/criteria.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/multisource_util.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/seqidlist_writer.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/taxid_set.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_isam.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_lmdb.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/blast/services/ ncbi-blast-2.11.0+-src/c++/include/objtools/blast/services/blast_services.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/cleanup/ ncbi-blast-2.11.0+-src/c++/include/objtools/cleanup/autogenerated_cleanup.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/cleanup/capitalization_string.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/cleanup/cleanup.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/cleanup/cleanup_change.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/cleanup/cleanup_message.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/cleanup/cleanup_pub.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/cleanup/fix_feature_id.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/ ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/blastdb/ ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/blastdb/blastdb_adapter.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/ ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/blob_id.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/cache/ ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/cache/reader_cache_entry.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/cache/reader_cache_params.h ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/cache/writer_cache_entry.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/gbloader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/gbloader_params.h ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/gbnative.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/gicache/ ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/gicache/reader_gicache.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/gicache/reader_gicache_entry.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/gicache/reader_gicache_params.h ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/id1/ ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/id1/reader_id1.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/id1/reader_id1_entry.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/id1/reader_id1_params.h ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/id2/ ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2_entry.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2_params.h ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/ ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/cache_manager.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/gbload_util.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/incr_time.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processors.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/psg_loader_impl.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_service.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/standalone_result.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/statistics.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/psg_loader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_interface.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_params.h ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_service_params.h ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/readers/ ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/readers/cache/ ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/readers/cache/reader_cache.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/readers/cache/writer_cache.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/readers/id1/ ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/readers/id1/reader_id1.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/readers/id2/ ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/readers/id2/reader_id2.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/readers/pubseqos/ ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/readers/pubseqos/reader_pubseq.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/readers/pubseqos2/ ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/readers/pubseqos2/reader_pubseq2.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/readers.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/seqref.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/writer_interface.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/loaders.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/ ncbi-blast-2.11.0+-src/c++/include/objtools/edit/apply_object.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/autodef.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/autodef_options.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/autodef_source_desc.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/autodef_with_tax.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/capitalization_string.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/cds_fix.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/dblink_field.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/edit_error.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/edit_exception.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/external_annots.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/feattable_edit.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/feature_propagate.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/field_handler.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/gap_trim.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/gaps_edit.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/gb_block_field.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/gene_utils.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/link_cds_mrna.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/loc_edit.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/mail_report.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/parse_text_options.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/promote.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/publication_edit.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/remote_updater.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/rna_edit.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/seq_edit.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/seq_entry_edit.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/seqid_guesser.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/source_edit.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/string_constraint.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/struc_comm_field.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/text_desc_field.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/edit/text_object_description.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/error_codes.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/ ncbi-blast-2.11.0+-src/c++/include/objtools/format/cigar_formatter.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/embl_formatter.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/embl_gather.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/feature_gather.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/flat_expt.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/flat_file_config.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/flat_file_generator.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/format_item_ostream.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/formatter.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/ftable_formatter.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/ftable_gather.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/gather_items.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/gather_iter.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/gbseq_formatter.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/genbank_formatter.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/genbank_gather.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/item_formatter.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/item_ostream.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/ ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/accession_item.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/alignment_item.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/basecount_item.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/comment_item.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/contig_item.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/ctrl_items.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/date_item.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/dbsource_item.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/defline_item.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/feature_item.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/flat_qual_slots.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/flat_seqloc.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gap_item.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gene_finder.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/genome_item.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/genome_project_item.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/html_anchor_item.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/item.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/item_base.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/keywords_item.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/locus_item.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/origin_item.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/primary_item.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/qualifiers.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/reference_item.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/segment_item.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/sequence_item.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/source_item.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/tsa_item.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/version_item.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/wgs_item.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/ostream_text_ostream.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/sam_formatter.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/format/text_ostream.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/logging/ ncbi-blast-2.11.0+-src/c++/include/objtools/logging/listener.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/logging/message.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/pubseq_gateway/ ncbi-blast-2.11.0+-src/c++/include/objtools/pubseq_gateway/client/ ncbi-blast-2.11.0+-src/c++/include/objtools/pubseq_gateway/client/impl/ ncbi-blast-2.11.0+-src/c++/include/objtools/pubseq_gateway/client/impl/misc.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/pubseq_gateway/client/psg_client.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/ ncbi-blast-2.11.0+-src/c++/include/objtools/readers/agp_converter.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/agp_read.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/agp_seq_entry.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/agp_util.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/agp_validate_reader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/aln_error_reporter.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/aln_formats.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/aln_reader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/alnread.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/bed_reader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/cigar.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/error_container.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta_exception.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta_reader_utils.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/featuredump.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/format_guess_ex.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/getfeature.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/gff2_data.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/gff2_reader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/gff3_reader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/gff3_sofa.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/gff_base_columns.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/gff_reader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/glimmer_reader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/gtf_reader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/gvf_reader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/idmapper.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/iidmapper.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/line_error.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/message_listener.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/microarray_reader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_error.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/phrap.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/psl_reader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/read_util.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_base.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_exception.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_idgen.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_listener.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_message.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/readfeat.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/rm_reader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/seqid_validate.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser_wrapper.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/struct_cmt_reader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/table_filter.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/track_data.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/ucscregion_reader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/vcf_reader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/readers/wiggle_reader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/ ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_bdb_reader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_cmdline_args.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_reader.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_writer.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_writer_fasta.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_writer_int.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_writer_seqloc.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_writer_tab.hpp ncbi-blast-2.11.0+-src/c++/include/objtools/simple/ ncbi-blast-2.11.0+-src/c++/include/objtools/simple/simple_om.hpp ncbi-blast-2.11.0+-src/c++/include/serial/ ncbi-blast-2.11.0+-src/c++/include/serial/delaybuf.hpp ncbi-blast-2.11.0+-src/c++/include/serial/enumvalues.hpp ncbi-blast-2.11.0+-src/c++/include/serial/error_codes.hpp ncbi-blast-2.11.0+-src/c++/include/serial/exception.hpp ncbi-blast-2.11.0+-src/c++/include/serial/grpc_integration/ ncbi-blast-2.11.0+-src/c++/include/serial/grpc_integration/grpc_integration.hpp ncbi-blast-2.11.0+-src/c++/include/serial/grpc_integration/impl/ ncbi-blast-2.11.0+-src/c++/include/serial/grpc_integration/impl/grpc_support.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/ ncbi-blast-2.11.0+-src/c++/include/serial/impl/aliasinfo.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/asntypes.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/autoptrinfo.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/choice.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/choice.inl ncbi-blast-2.11.0+-src/c++/include/serial/impl/choiceptr.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/classinfo.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/classinfo.inl ncbi-blast-2.11.0+-src/c++/include/serial/impl/classinfob.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/classinfob.inl ncbi-blast-2.11.0+-src/c++/include/serial/impl/classinfohelper.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/continfo.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/continfo.inl ncbi-blast-2.11.0+-src/c++/include/serial/impl/enumerated.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/hookdata.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/hookdatakey.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/hookfunc.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/item.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/item.inl ncbi-blast-2.11.0+-src/c++/include/serial/impl/member.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/member.inl ncbi-blast-2.11.0+-src/c++/include/serial/impl/memberid.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/memberid.inl ncbi-blast-2.11.0+-src/c++/include/serial/impl/memberlist.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/memberlist.inl ncbi-blast-2.11.0+-src/c++/include/serial/impl/objcopy.inl ncbi-blast-2.11.0+-src/c++/include/serial/impl/objectinfo.inl ncbi-blast-2.11.0+-src/c++/include/serial/impl/objectio.inl ncbi-blast-2.11.0+-src/c++/include/serial/impl/objectiter.inl ncbi-blast-2.11.0+-src/c++/include/serial/impl/objecttype.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/objistr.inl ncbi-blast-2.11.0+-src/c++/include/serial/impl/objistrasnb.inl ncbi-blast-2.11.0+-src/c++/include/serial/impl/objistrimpl.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/objistrxml.inl ncbi-blast-2.11.0+-src/c++/include/serial/impl/objlist.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/objlist.inl ncbi-blast-2.11.0+-src/c++/include/serial/impl/objostr.inl ncbi-blast-2.11.0+-src/c++/include/serial/impl/objostrxml.inl ncbi-blast-2.11.0+-src/c++/include/serial/impl/objstack.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/objstack.inl ncbi-blast-2.11.0+-src/c++/include/serial/impl/objstrasnb.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/objstrasnb.inl ncbi-blast-2.11.0+-src/c++/include/serial/impl/pathhook.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/ptrinfo.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/ptrinfo.inl ncbi-blast-2.11.0+-src/c++/include/serial/impl/serialasndef.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/stdtypeinfo.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/stdtypes.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/stdtypes.inl ncbi-blast-2.11.0+-src/c++/include/serial/impl/stdtypesimpl.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypesimpl.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/timetypeinfo.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/typeinfo.inl ncbi-blast-2.11.0+-src/c++/include/serial/impl/typeinfoimpl.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/typemap.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/typemapimpl.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/typeref.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/typeref.inl ncbi-blast-2.11.0+-src/c++/include/serial/impl/variant.hpp ncbi-blast-2.11.0+-src/c++/include/serial/impl/variant.inl ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp ncbi-blast-2.11.0+-src/c++/include/serial/objcopy.hpp ncbi-blast-2.11.0+-src/c++/include/serial/objectinfo.hpp ncbi-blast-2.11.0+-src/c++/include/serial/objectio.hpp ncbi-blast-2.11.0+-src/c++/include/serial/objectiter.hpp ncbi-blast-2.11.0+-src/c++/include/serial/objhook.hpp ncbi-blast-2.11.0+-src/c++/include/serial/objistr.hpp ncbi-blast-2.11.0+-src/c++/include/serial/objistrasn.hpp ncbi-blast-2.11.0+-src/c++/include/serial/objistrasnb.hpp ncbi-blast-2.11.0+-src/c++/include/serial/objistrjson.hpp ncbi-blast-2.11.0+-src/c++/include/serial/objistrxml.hpp ncbi-blast-2.11.0+-src/c++/include/serial/objostr.hpp ncbi-blast-2.11.0+-src/c++/include/serial/objostrasn.hpp ncbi-blast-2.11.0+-src/c++/include/serial/objostrasnb.hpp ncbi-blast-2.11.0+-src/c++/include/serial/objostrjson.hpp ncbi-blast-2.11.0+-src/c++/include/serial/objostrxml.hpp ncbi-blast-2.11.0+-src/c++/include/serial/pack_string.hpp ncbi-blast-2.11.0+-src/c++/include/serial/rpcbase.hpp ncbi-blast-2.11.0+-src/c++/include/serial/rpcbase_impl.hpp ncbi-blast-2.11.0+-src/c++/include/serial/serial.hpp ncbi-blast-2.11.0+-src/c++/include/serial/serialasn.hpp ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp ncbi-blast-2.11.0+-src/c++/include/serial/serialdef.hpp ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp ncbi-blast-2.11.0+-src/c++/include/serial/serializable.hpp ncbi-blast-2.11.0+-src/c++/include/serial/serialutil.hpp ncbi-blast-2.11.0+-src/c++/include/serial/streamiter.hpp ncbi-blast-2.11.0+-src/c++/include/serial/typeinfo.hpp ncbi-blast-2.11.0+-src/c++/include/util/ ncbi-blast-2.11.0+-src/c++/include/util/align_range.hpp ncbi-blast-2.11.0+-src/c++/include/util/align_range_coll.hpp 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ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/check_config.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/cipher.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/cipher_internal.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/cmac.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/compat-1.3.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/config.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/ctr_drbg.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/debug.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/des.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/dhm.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/ecdh.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/ecdsa.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/ecjpake.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/ecp.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/ecp_internal.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/entropy.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/entropy_poll.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/error.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/gcm.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/havege.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/hmac_drbg.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/md.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/md2.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/md4.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/md5.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/md_internal.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/memory_buffer_alloc.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/ncbicxx_rename_mbedtls.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/net.h ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/net_sockets.h 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ncbi-blast-2.11.0+-src/c++/src/connect/services/neticache_client.cpp ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api.cpp ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api_admin.cpp ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api_executor.cpp ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api_expt.cpp ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api_getjob.cpp ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api_getjob.hpp ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api_impl.hpp ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api_reader.cpp ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api_submitter.cpp ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api_wn_info.cpp ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_key.cpp ncbi-blast-2.11.0+-src/c++/src/connect/services/netservice_api.cpp ncbi-blast-2.11.0+-src/c++/src/connect/services/netservice_api_impl.hpp ncbi-blast-2.11.0+-src/c++/src/connect/services/netservice_params.cpp ncbi-blast-2.11.0+-src/c++/src/connect/services/netservice_params.hpp ncbi-blast-2.11.0+-src/c++/src/connect/services/netservice_protocol_parser.cpp ncbi-blast-2.11.0+-src/c++/src/connect/services/netstorage.cpp ncbi-blast-2.11.0+-src/c++/src/connect/services/netstorage_direct_nc.cpp ncbi-blast-2.11.0+-src/c++/src/connect/services/netstorage_direct_nc.hpp ncbi-blast-2.11.0+-src/c++/src/connect/services/netstorage_rpc.cpp ncbi-blast-2.11.0+-src/c++/src/connect/services/netstorage_rpc.hpp ncbi-blast-2.11.0+-src/c++/src/connect/services/netstorageobjectinfo.cpp ncbi-blast-2.11.0+-src/c++/src/connect/services/netstorageobjectloc.cpp ncbi-blast-2.11.0+-src/c++/src/connect/services/ns_client_factory.cpp ncbi-blast-2.11.0+-src/c++/src/connect/services/ns_job_serializer.cpp ncbi-blast-2.11.0+-src/c++/src/connect/services/ns_output_parser.cpp ncbi-blast-2.11.0+-src/c++/src/connect/services/remote_app.cpp ncbi-blast-2.11.0+-src/c++/src/connect/services/srv_connections.cpp ncbi-blast-2.11.0+-src/c++/src/connect/services/srv_connections_impl.hpp ncbi-blast-2.11.0+-src/c++/src/connect/services/util.cpp ncbi-blast-2.11.0+-src/c++/src/connect/services/wn_cleanup.cpp ncbi-blast-2.11.0+-src/c++/src/connect/services/wn_cleanup.hpp ncbi-blast-2.11.0+-src/c++/src/connect/services/wn_commit_thread.cpp ncbi-blast-2.11.0+-src/c++/src/connect/services/wn_commit_thread.hpp ncbi-blast-2.11.0+-src/c++/src/connect/services/wn_main_loop.cpp ncbi-blast-2.11.0+-src/c++/src/connect/services/wn_offline_mode.cpp ncbi-blast-2.11.0+-src/c++/src/connect/threaded_server.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ ncbi-blast-2.11.0+-src/c++/src/corelib/CMakeLists.corelib.lib.txt ncbi-blast-2.11.0+-src/c++/src/corelib/CMakeLists.test_boost.lib.txt ncbi-blast-2.11.0+-src/c++/src/corelib/CMakeLists.test_mt.lib.txt ncbi-blast-2.11.0+-src/c++/src/corelib/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/corelib/Makefile.corelib.lib ncbi-blast-2.11.0+-src/c++/src/corelib/Makefile.corelib.lib.msvc ncbi-blast-2.11.0+-src/c++/src/corelib/Makefile.corelib.lib.xcode ncbi-blast-2.11.0+-src/c++/src/corelib/Makefile.in ncbi-blast-2.11.0+-src/c++/src/corelib/Makefile.ncbi_java.dll.msvc ncbi-blast-2.11.0+-src/c++/src/corelib/Makefile.ncbi_java.lib ncbi-blast-2.11.0+-src/c++/src/corelib/Makefile.precompile.in ncbi-blast-2.11.0+-src/c++/src/corelib/Makefile.test_boost.lib ncbi-blast-2.11.0+-src/c++/src/corelib/Makefile.test_boost.lib.msvc ncbi-blast-2.11.0+-src/c++/src/corelib/Makefile.test_mt.lib ncbi-blast-2.11.0+-src/c++/src/corelib/Makefile.test_mt.lib.msvc ncbi-blast-2.11.0+-src/c++/src/corelib/blob_storage.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ddumpable.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/env_reg.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/expr.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/guard.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/interprocess_lock.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/metareg.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_application.xsd ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_autoinit.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_base64.c ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_base64.h ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_config.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_cookies.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_fast.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_java.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_message.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_os_mswin.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_os_mswin_p.hpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_os_unix.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_os_unix_p.hpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_param.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_process.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_safe_static.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_signal.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_stack.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_stack_default.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_stack_libbackward.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_stack_libunwind.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_stack_linux.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_stack_solaris.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_stack_win32.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_stack_win64.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_strings.c ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_system.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_toolkit.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_url.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_version.xsd ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiapp.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiargs.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiargs_p.hpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiatomic.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiatomic_workshop.c ncbi-blast-2.11.0+-src/c++/src/corelib/ncbicfg.c.in ncbi-blast-2.11.0+-src/c++/src/corelib/ncbicntr_workshop.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbicntr_workshop.il ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidbg.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidbg_p.hpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag_p.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag_p.hpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidll.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbienv.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbierror.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiexec.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiexpt.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbifile.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbimempool.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbimtx.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiobj.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbireg.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbistr.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbistre.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbisys.hpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbithr.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/ncbitime.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/obj_store.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/perf_log.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/plugin_manager.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/plugin_manager_store.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/request_control.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/request_ctx.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/request_status.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/resource_info.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/rwstreambuf.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/stream_utils.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/syslog.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/teamcity_boost.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/teamcity_messages.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/test_boost.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/test_mt.cpp ncbi-blast-2.11.0+-src/c++/src/corelib/version.cpp ncbi-blast-2.11.0+-src/c++/src/db/ ncbi-blast-2.11.0+-src/c++/src/db/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/db/Makefile.in ncbi-blast-2.11.0+-src/c++/src/db/sqlite/ ncbi-blast-2.11.0+-src/c++/src/db/sqlite/CMakeLists.sqlitewrapp.lib.txt ncbi-blast-2.11.0+-src/c++/src/db/sqlite/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/db/sqlite/Makefile.in ncbi-blast-2.11.0+-src/c++/src/db/sqlite/Makefile.sqlitewrapp.lib ncbi-blast-2.11.0+-src/c++/src/db/sqlite/sqlitewrapp.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/ ncbi-blast-2.11.0+-src/c++/src/dbapi/CMakeLists.dbapi.lib.txt ncbi-blast-2.11.0+-src/c++/src/dbapi/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/dbapi/Makefile.dbapi.lib ncbi-blast-2.11.0+-src/c++/src/dbapi/Makefile.in ncbi-blast-2.11.0+-src/c++/src/dbapi/active_obj.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/active_obj.hpp ncbi-blast-2.11.0+-src/c++/src/dbapi/blobstream.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/blobstream.hpp ncbi-blast-2.11.0+-src/c++/src/dbapi/bulkinsert.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/bulkinsert.hpp ncbi-blast-2.11.0+-src/c++/src/dbapi/bytestreambuf.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/bytestreambuf.hpp ncbi-blast-2.11.0+-src/c++/src/dbapi/cache/ ncbi-blast-2.11.0+-src/c++/src/dbapi/cache/CMakeLists.ncbi_xcache_dbapi.lib.txt ncbi-blast-2.11.0+-src/c++/src/dbapi/cache/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/dbapi/cache/Makefile.in ncbi-blast-2.11.0+-src/c++/src/dbapi/cache/Makefile.ncbi_xcache_dbapi.lib ncbi-blast-2.11.0+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/cache/dbapi_blob_cache_cf.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/cache/mssql_create_tables.sql ncbi-blast-2.11.0+-src/c++/src/dbapi/conn_impl.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/conn_impl.hpp ncbi-blast-2.11.0+-src/c++/src/dbapi/cstmt_impl.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/cstmt_impl.hpp ncbi-blast-2.11.0+-src/c++/src/dbapi/cursor_impl.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/cursor_impl.hpp ncbi-blast-2.11.0+-src/c++/src/dbapi/dbapi.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/dbexception.hpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/ ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/CMakeLists.dbapi_driver.lib.txt ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/Makefile.dbapi_driver.lib ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/Makefile.dbapi_driver.lib.msvc ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/Makefile.in ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.hpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_sample_base.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_sample_base.hpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/driver_mgr.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/exception.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/handle_stack.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/interfaces.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/memory_store.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/memory_store.hpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/ncbi_win_hook.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/ncbi_win_hook.hpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/numeric_convert.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/odbc/ ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/odbc/CMakeLists.ncbi_xdbapi_odbc.lib.txt ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/odbc/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/odbc/Makefile.in ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/odbc/Makefile.ncbi_xdbapi_odbc.lib ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/odbc/Makefile.ncbi_xdbapi_odbc.lib.msvc ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/odbc/bcp.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/odbc/connection.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/odbc/context.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/odbc/cursor.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/odbc/lang_cmd.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/odbc/odbc_utils.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/odbc/odbc_utils.hpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/odbc/result.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/odbc/rpc.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/parameters.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/pointer_pot.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/public.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/types.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/driver_mgr.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/ds_impl.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/ds_impl.hpp ncbi-blast-2.11.0+-src/c++/src/dbapi/err_handler.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/err_handler.hpp ncbi-blast-2.11.0+-src/c++/src/dbapi/rs_impl.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/rs_impl.hpp ncbi-blast-2.11.0+-src/c++/src/dbapi/rsmeta_impl.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/rsmeta_impl.hpp ncbi-blast-2.11.0+-src/c++/src/dbapi/rw_impl.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/rw_impl.hpp ncbi-blast-2.11.0+-src/c++/src/dbapi/stmt_impl.cpp ncbi-blast-2.11.0+-src/c++/src/dbapi/stmt_impl.hpp ncbi-blast-2.11.0+-src/c++/src/dbapi/variant.cpp ncbi-blast-2.11.0+-src/c++/src/html/ ncbi-blast-2.11.0+-src/c++/src/html/CMakeLists.html.lib.txt ncbi-blast-2.11.0+-src/c++/src/html/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/html/Makefile.html.lib ncbi-blast-2.11.0+-src/c++/src/html/Makefile.in ncbi-blast-2.11.0+-src/c++/src/html/commentdiag.cpp ncbi-blast-2.11.0+-src/c++/src/html/components.cpp ncbi-blast-2.11.0+-src/c++/src/html/html.cpp ncbi-blast-2.11.0+-src/c++/src/html/html_exception.cpp ncbi-blast-2.11.0+-src/c++/src/html/htmlhelper.cpp ncbi-blast-2.11.0+-src/c++/src/html/indentstream.cpp ncbi-blast-2.11.0+-src/c++/src/html/ncbi_menu.js ncbi-blast-2.11.0+-src/c++/src/html/ncbi_menu_dnd.js ncbi-blast-2.11.0+-src/c++/src/html/ncbi_menu_dyn.js ncbi-blast-2.11.0+-src/c++/src/html/node.cpp ncbi-blast-2.11.0+-src/c++/src/html/page.cpp ncbi-blast-2.11.0+-src/c++/src/html/pager.cpp ncbi-blast-2.11.0+-src/c++/src/html/selection.cpp ncbi-blast-2.11.0+-src/c++/src/html/writer_htmlenc.cpp ncbi-blast-2.11.0+-src/c++/src/misc/ ncbi-blast-2.11.0+-src/c++/src/misc/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/misc/Makefile.in ncbi-blast-2.11.0+-src/c++/src/misc/jsonwrapp/ ncbi-blast-2.11.0+-src/c++/src/misc/jsonwrapp/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/misc/jsonwrapp/Makefile.in ncbi-blast-2.11.0+-src/c++/src/misc/jsonwrapp/test/ ncbi-blast-2.11.0+-src/c++/src/misc/jsonwrapp/test/CMakeLists.test_jsonwrapp.app.txt ncbi-blast-2.11.0+-src/c++/src/misc/jsonwrapp/test/CMakeLists.test_jsonwrapp_old.app.txt ncbi-blast-2.11.0+-src/c++/src/misc/jsonwrapp/test/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/misc/jsonwrapp/test/Makefile.in ncbi-blast-2.11.0+-src/c++/src/misc/jsonwrapp/test/Makefile.test_jsonwrapp.app ncbi-blast-2.11.0+-src/c++/src/misc/jsonwrapp/test/Makefile.test_jsonwrapp10.app ncbi-blast-2.11.0+-src/c++/src/misc/jsonwrapp/test/test_jsonwrapp.cpp ncbi-blast-2.11.0+-src/c++/src/misc/jsonwrapp/test/test_jsonwrapp10.cpp ncbi-blast-2.11.0+-src/c++/src/misc/third_party/ ncbi-blast-2.11.0+-src/c++/src/misc/third_party/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/misc/third_party/Makefile.in ncbi-blast-2.11.0+-src/c++/src/misc/third_party/Makefile.third_party_dll_install.msvcproj ncbi-blast-2.11.0+-src/c++/src/misc/third_party/Makefile.third_party_dll_install.msvcproj.msvc ncbi-blast-2.11.0+-src/c++/src/misc/third_party/Makefile.third_party_msvcdll_install.msvcproj ncbi-blast-2.11.0+-src/c++/src/misc/third_party_static/ ncbi-blast-2.11.0+-src/c++/src/misc/third_party_static/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/misc/third_party_static/Makefile.in ncbi-blast-2.11.0+-src/c++/src/misc/third_party_static/Makefile.third_party_msvcstatic_install.msvcproj ncbi-blast-2.11.0+-src/c++/src/misc/third_party_static/Makefile.third_party_static_install.msvcproj ncbi-blast-2.11.0+-src/c++/src/misc/third_party_static/Makefile.third_party_static_install.msvcproj.msvc ncbi-blast-2.11.0+-src/c++/src/objects/ ncbi-blast-2.11.0+-src/c++/src/objects/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/Makefile.sources ncbi-blast-2.11.0+-src/c++/src/objects/access/ ncbi-blast-2.11.0+-src/c++/src/objects/access/CMakeLists.access.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/access/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/access/Makefile.access.lib ncbi-blast-2.11.0+-src/c++/src/objects/access/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/access/access.asn ncbi-blast-2.11.0+-src/c++/src/objects/access/access.def ncbi-blast-2.11.0+-src/c++/src/objects/access/access.module ncbi-blast-2.11.0+-src/c++/src/objects/biblio/ ncbi-blast-2.11.0+-src/c++/src/objects/biblio/Affil.cpp ncbi-blast-2.11.0+-src/c++/src/objects/biblio/Auth_list.cpp ncbi-blast-2.11.0+-src/c++/src/objects/biblio/Author.cpp ncbi-blast-2.11.0+-src/c++/src/objects/biblio/CMakeLists.biblio.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/biblio/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/biblio/Cit_art.cpp ncbi-blast-2.11.0+-src/c++/src/objects/biblio/Cit_book.cpp ncbi-blast-2.11.0+-src/c++/src/objects/biblio/Cit_gen.cpp ncbi-blast-2.11.0+-src/c++/src/objects/biblio/Cit_jour.cpp ncbi-blast-2.11.0+-src/c++/src/objects/biblio/Cit_let.cpp ncbi-blast-2.11.0+-src/c++/src/objects/biblio/Cit_pat.cpp ncbi-blast-2.11.0+-src/c++/src/objects/biblio/Cit_proc.cpp ncbi-blast-2.11.0+-src/c++/src/objects/biblio/Cit_sub.cpp ncbi-blast-2.11.0+-src/c++/src/objects/biblio/Id_pat.cpp ncbi-blast-2.11.0+-src/c++/src/objects/biblio/Makefile.biblio.lib ncbi-blast-2.11.0+-src/c++/src/objects/biblio/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/biblio/Title.cpp ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.def ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.module ncbi-blast-2.11.0+-src/c++/src/objects/biblio/citation_base.cpp ncbi-blast-2.11.0+-src/c++/src/objects/biotree/ ncbi-blast-2.11.0+-src/c++/src/objects/biotree/BioTreeContainer.cpp ncbi-blast-2.11.0+-src/c++/src/objects/biotree/CMakeLists.biotree.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/biotree/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/biotree/DistanceMatrix.cpp ncbi-blast-2.11.0+-src/c++/src/objects/biotree/Makefile.biotree.lib ncbi-blast-2.11.0+-src/c++/src/objects/biotree/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/biotree/biotree.asn ncbi-blast-2.11.0+-src/c++/src/objects/biotree/biotree.def ncbi-blast-2.11.0+-src/c++/src/objects/biotree/biotree.module ncbi-blast-2.11.0+-src/c++/src/objects/blast/ ncbi-blast-2.11.0+-src/c++/src/objects/blast/.cvsignore.extra ncbi-blast-2.11.0+-src/c++/src/objects/blast/Blast4_parameters.cpp ncbi-blast-2.11.0+-src/c++/src/objects/blast/Blast4_queries.cpp ncbi-blast-2.11.0+-src/c++/src/objects/blast/CMakeLists.blast.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/blast/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/blast/CMakeLists.xnetblastcli.lib.txt ncbi-blast-2.11.0+-src/c++/src/objects/blast/Makefile.blast.lib ncbi-blast-2.11.0+-src/c++/src/objects/blast/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/blast/Makefile.xnetblastcli.lib ncbi-blast-2.11.0+-src/c++/src/objects/blast/blast.asn ncbi-blast-2.11.0+-src/c++/src/objects/blast/blast.def ncbi-blast-2.11.0+-src/c++/src/objects/blast/blast.module ncbi-blast-2.11.0+-src/c++/src/objects/blast/doc/ ncbi-blast-2.11.0+-src/c++/src/objects/blast/doc/blast.htm ncbi-blast-2.11.0+-src/c++/src/objects/blast/doc/style.css ncbi-blast-2.11.0+-src/c++/src/objects/blast/names.cpp ncbi-blast-2.11.0+-src/c++/src/objects/blastdb/ ncbi-blast-2.11.0+-src/c++/src/objects/blastdb/Blast_def_line.cpp ncbi-blast-2.11.0+-src/c++/src/objects/blastdb/Blast_def_line_set.cpp ncbi-blast-2.11.0+-src/c++/src/objects/blastdb/CMakeLists.blastdb.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/blastdb/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/blastdb/Makefile.blastdb.lib ncbi-blast-2.11.0+-src/c++/src/objects/blastdb/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/blastdb/blastdb.asn ncbi-blast-2.11.0+-src/c++/src/objects/blastdb/blastdb.def ncbi-blast-2.11.0+-src/c++/src/objects/blastdb/blastdb.module ncbi-blast-2.11.0+-src/c++/src/objects/blastxml/ ncbi-blast-2.11.0+-src/c++/src/objects/blastxml/CMakeLists.blastxml.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/blastxml/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/blastxml/Makefile.blastxml.lib ncbi-blast-2.11.0+-src/c++/src/objects/blastxml/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/blastxml/blastxml.asn ncbi-blast-2.11.0+-src/c++/src/objects/blastxml/blastxml.def ncbi-blast-2.11.0+-src/c++/src/objects/blastxml2/ ncbi-blast-2.11.0+-src/c++/src/objects/blastxml2/CMakeLists.blastxml2.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/blastxml2/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/blastxml2/Makefile.blastxml2.lib ncbi-blast-2.11.0+-src/c++/src/objects/blastxml2/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/blastxml2/blastxml2.asn ncbi-blast-2.11.0+-src/c++/src/objects/blastxml2/blastxml2.def ncbi-blast-2.11.0+-src/c++/src/objects/cdd/ ncbi-blast-2.11.0+-src/c++/src/objects/cdd/CMakeLists.cdd.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/cdd/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/cdd/Cdd.cpp ncbi-blast-2.11.0+-src/c++/src/objects/cdd/Makefile.cdd.lib ncbi-blast-2.11.0+-src/c++/src/objects/cdd/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/cdd/cdd.asn ncbi-blast-2.11.0+-src/c++/src/objects/cdd/cdd.def ncbi-blast-2.11.0+-src/c++/src/objects/cdd/cdd.module ncbi-blast-2.11.0+-src/c++/src/objects/cn3d/ ncbi-blast-2.11.0+-src/c++/src/objects/cn3d/CMakeLists.cn3d.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/cn3d/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/cn3d/Makefile.cn3d.lib ncbi-blast-2.11.0+-src/c++/src/objects/cn3d/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/cn3d/cn3d.asn ncbi-blast-2.11.0+-src/c++/src/objects/cn3d/cn3d.def ncbi-blast-2.11.0+-src/c++/src/objects/cn3d/cn3d.module ncbi-blast-2.11.0+-src/c++/src/objects/coords/ ncbi-blast-2.11.0+-src/c++/src/objects/coords/CMakeLists.objcoords.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/coords/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/coords/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/coords/Makefile.objcoords.lib ncbi-blast-2.11.0+-src/c++/src/objects/coords/objcoords.asn ncbi-blast-2.11.0+-src/c++/src/objects/coords/objcoords.def ncbi-blast-2.11.0+-src/c++/src/objects/coords/objcoords.module ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/ ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/primary_track/ ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/primary_track/CMakeLists.dbsnp_primary_track.lib.txt ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/primary_track/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/primary_track/Makefile.dbsnp.lib ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/primary_track/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/primary_track/dbsnp.grpc.pb.wrapper.cc ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/primary_track/dbsnp.pb.wrapper.cc ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/primary_track/dbsnp.proto ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp ncbi-blast-2.11.0+-src/c++/src/objects/docsum/ ncbi-blast-2.11.0+-src/c++/src/objects/docsum/CMakeLists.docsum.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/docsum/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/docsum/Makefile.docsum.lib ncbi-blast-2.11.0+-src/c++/src/objects/docsum/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/docsum/docsum.asn ncbi-blast-2.11.0+-src/c++/src/objects/docsum/docsum.def ncbi-blast-2.11.0+-src/c++/src/objects/docsum/docsum.module ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/ ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/.cvsignore.extra ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/CMakeLists.entrez2.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/CMakeLists.entrez2cli.lib.txt ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/Entrez2_docsum.cpp ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/Entrez2_id_list.cpp ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/Makefile.entrez2.lib ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/Makefile.entrez2cli.lib ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/entrez2.asn ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/entrez2.def ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/entrez2.module ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/entrez2_client.cpp ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene/ ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene/CMakeLists.entrezgene.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene/Entrezgene.cpp ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene/Gene_commentary.cpp ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene/Makefile.entrezgene.lib ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene/entrezgene.asn ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene/entrezgene.def ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene/entrezgene.module ncbi-blast-2.11.0+-src/c++/src/objects/featdef/ ncbi-blast-2.11.0+-src/c++/src/objects/featdef/CMakeLists.featdef.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/featdef/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/featdef/Makefile.featdef.lib ncbi-blast-2.11.0+-src/c++/src/objects/featdef/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/featdef/featdef.asn ncbi-blast-2.11.0+-src/c++/src/objects/featdef/featdef.def ncbi-blast-2.11.0+-src/c++/src/objects/featdef/featdef.module ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/ ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/AbstractProjectItem.cpp ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/CMakeLists.gbproj.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/FolderInfo.cpp ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/GBProject_ver2.cpp ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/Makefile.gbproj.lib ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/ProjectDescr.cpp ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/ProjectFolder.cpp ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/ProjectItem.cpp ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/gbproj.asn ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/gbproj.def ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/gbproj.module ncbi-blast-2.11.0+-src/c++/src/objects/gbseq/ ncbi-blast-2.11.0+-src/c++/src/objects/gbseq/CMakeLists.gbseq.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/gbseq/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/gbseq/Makefile.gbseq.lib ncbi-blast-2.11.0+-src/c++/src/objects/gbseq/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/gbseq/gbseq.asn ncbi-blast-2.11.0+-src/c++/src/objects/gbseq/gbseq.def ncbi-blast-2.11.0+-src/c++/src/objects/gbseq/gbseq.module ncbi-blast-2.11.0+-src/c++/src/objects/general/ ncbi-blast-2.11.0+-src/c++/src/objects/general/CMakeLists.general.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/general/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/general/Date.cpp ncbi-blast-2.11.0+-src/c++/src/objects/general/Date_std.cpp ncbi-blast-2.11.0+-src/c++/src/objects/general/Dbtag.cpp ncbi-blast-2.11.0+-src/c++/src/objects/general/Int_fuzz.cpp ncbi-blast-2.11.0+-src/c++/src/objects/general/Makefile.general.lib ncbi-blast-2.11.0+-src/c++/src/objects/general/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/general/Name_std.cpp ncbi-blast-2.11.0+-src/c++/src/objects/general/Object_id.cpp ncbi-blast-2.11.0+-src/c++/src/objects/general/Person_id.cpp ncbi-blast-2.11.0+-src/c++/src/objects/general/User_field.cpp ncbi-blast-2.11.0+-src/c++/src/objects/general/User_object.cpp ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn ncbi-blast-2.11.0+-src/c++/src/objects/general/general.def ncbi-blast-2.11.0+-src/c++/src/objects/general/general.module ncbi-blast-2.11.0+-src/c++/src/objects/general/uoconv.cpp ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc/ ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc/CMakeLists.genesbyloc.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc/Makefile.genesbyloc.lib ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc/genesbyloc.asn ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc/genesbyloc.def ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc/genesbyloc.module ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/ ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/.cvsignore.extra ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/CMakeLists.gencoll_client.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/CMakeLists.genome_collection.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/GCClient_GetAssemblyBySequ.cpp ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/GCClient_GetAssemblyReques.cpp ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/GC_Assembly.cpp ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/GC_AssemblySet.cpp ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/GC_AssemblyUnit.cpp ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/GC_Replicon.cpp ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/GC_Sequence.cpp ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/Makefile.gencoll_client.lib ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/Makefile.genome_collection.lib ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/cached_assembly.cpp ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/gc_cli/ ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/gc_cli/CMakeLists.gc_cli.app.txt ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/gc_cli/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/gc_cli/Makefile.gc_cli.app ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/gc_cli/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/gc_cli/gc_cli.cpp ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/gencoll.def ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/gencoll.module ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/gencoll_client.asn ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/gencoll_client.def ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/gencoll_client.module ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/genome_collection.asn ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/genome_collection.def ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/genome_collection.module ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/genomic_collections_cli.cpp ncbi-blast-2.11.0+-src/c++/src/objects/homologene/ ncbi-blast-2.11.0+-src/c++/src/objects/homologene/CMakeLists.homologene.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/homologene/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/homologene/HG_Gene.cpp ncbi-blast-2.11.0+-src/c++/src/objects/homologene/Makefile.homologene.lib ncbi-blast-2.11.0+-src/c++/src/objects/homologene/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/homologene/homologene.asn ncbi-blast-2.11.0+-src/c++/src/objects/homologene/homologene.def ncbi-blast-2.11.0+-src/c++/src/objects/homologene/homologene.module ncbi-blast-2.11.0+-src/c++/src/objects/id1/ ncbi-blast-2.11.0+-src/c++/src/objects/id1/.cvsignore.extra ncbi-blast-2.11.0+-src/c++/src/objects/id1/CMakeLists.id1.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/id1/CMakeLists.id1cli.lib.txt ncbi-blast-2.11.0+-src/c++/src/objects/id1/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/id1/ID1server_back.cpp ncbi-blast-2.11.0+-src/c++/src/objects/id1/Makefile.id1.lib ncbi-blast-2.11.0+-src/c++/src/objects/id1/Makefile.id1cli.lib ncbi-blast-2.11.0+-src/c++/src/objects/id1/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/id1/id1.asn ncbi-blast-2.11.0+-src/c++/src/objects/id1/id1.def ncbi-blast-2.11.0+-src/c++/src/objects/id1/id1.module ncbi-blast-2.11.0+-src/c++/src/objects/id1/id1_client.cpp ncbi-blast-2.11.0+-src/c++/src/objects/id2/ ncbi-blast-2.11.0+-src/c++/src/objects/id2/.cvsignore.extra ncbi-blast-2.11.0+-src/c++/src/objects/id2/CMakeLists.id2.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/id2/CMakeLists.id2cli.lib.txt ncbi-blast-2.11.0+-src/c++/src/objects/id2/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/id2/ID2_Reply_Data.cpp ncbi-blast-2.11.0+-src/c++/src/objects/id2/ID2_Request_Packet.cpp ncbi-blast-2.11.0+-src/c++/src/objects/id2/Makefile.id2.lib ncbi-blast-2.11.0+-src/c++/src/objects/id2/Makefile.id2cli.lib ncbi-blast-2.11.0+-src/c++/src/objects/id2/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/id2/id2.asn ncbi-blast-2.11.0+-src/c++/src/objects/id2/id2.def ncbi-blast-2.11.0+-src/c++/src/objects/id2/id2.module ncbi-blast-2.11.0+-src/c++/src/objects/id2/id2.txt ncbi-blast-2.11.0+-src/c++/src/objects/id2/id2_client.cpp ncbi-blast-2.11.0+-src/c++/src/objects/insdseq/ ncbi-blast-2.11.0+-src/c++/src/objects/insdseq/CMakeLists.insdseq.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/insdseq/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/insdseq/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/insdseq/Makefile.insdseq.lib ncbi-blast-2.11.0+-src/c++/src/objects/insdseq/insdseq.asn ncbi-blast-2.11.0+-src/c++/src/objects/insdseq/insdseq.def ncbi-blast-2.11.0+-src/c++/src/objects/insdseq/insdseq.module ncbi-blast-2.11.0+-src/c++/src/objects/macro/ ncbi-blast-2.11.0+-src/c++/src/objects/macro/CMakeLists.macro.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/macro/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/macro/Constraint_choice.cpp ncbi-blast-2.11.0+-src/c++/src/objects/macro/Constraint_choice_set.cpp ncbi-blast-2.11.0+-src/c++/src/objects/macro/Feat_qual_choice.cpp ncbi-blast-2.11.0+-src/c++/src/objects/macro/Feature_field.cpp ncbi-blast-2.11.0+-src/c++/src/objects/macro/Field_constraint.cpp ncbi-blast-2.11.0+-src/c++/src/objects/macro/Field_type.cpp ncbi-blast-2.11.0+-src/c++/src/objects/macro/Location_constraint.cpp ncbi-blast-2.11.0+-src/c++/src/objects/macro/Location_pos_constraint.cpp ncbi-blast-2.11.0+-src/c++/src/objects/macro/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/macro/Makefile.macro.lib ncbi-blast-2.11.0+-src/c++/src/objects/macro/Molinfo_field.cpp ncbi-blast-2.11.0+-src/c++/src/objects/macro/README.txt ncbi-blast-2.11.0+-src/c++/src/objects/macro/Replace_func.cpp ncbi-blast-2.11.0+-src/c++/src/objects/macro/Replace_rule.cpp ncbi-blast-2.11.0+-src/c++/src/objects/macro/Rna_feat_type.cpp ncbi-blast-2.11.0+-src/c++/src/objects/macro/Rna_qual.cpp ncbi-blast-2.11.0+-src/c++/src/objects/macro/Search_func.cpp ncbi-blast-2.11.0+-src/c++/src/objects/macro/Simple_replace.cpp ncbi-blast-2.11.0+-src/c++/src/objects/macro/Source_qual_choice.cpp ncbi-blast-2.11.0+-src/c++/src/objects/macro/String_constraint.cpp ncbi-blast-2.11.0+-src/c++/src/objects/macro/Suspect_rule.cpp ncbi-blast-2.11.0+-src/c++/src/objects/macro/Suspect_rule_set.cpp ncbi-blast-2.11.0+-src/c++/src/objects/macro/Word_substitution.cpp ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro.asn ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro.module ncbi-blast-2.11.0+-src/c++/src/objects/macro/weasel.inc ncbi-blast-2.11.0+-src/c++/src/objects/macro/weasel.txt ncbi-blast-2.11.0+-src/c++/src/objects/medlars/ ncbi-blast-2.11.0+-src/c++/src/objects/medlars/CMakeLists.medlars.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/medlars/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/medlars/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/medlars/Makefile.medlars.lib ncbi-blast-2.11.0+-src/c++/src/objects/medlars/medlars.asn ncbi-blast-2.11.0+-src/c++/src/objects/medlars/medlars.def ncbi-blast-2.11.0+-src/c++/src/objects/medlars/medlars.module ncbi-blast-2.11.0+-src/c++/src/objects/medline/ ncbi-blast-2.11.0+-src/c++/src/objects/medline/CMakeLists.medline.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/medline/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/medline/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/medline/Makefile.medline.lib ncbi-blast-2.11.0+-src/c++/src/objects/medline/Medline_entry.cpp ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.asn ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.def ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.module ncbi-blast-2.11.0+-src/c++/src/objects/mim/ ncbi-blast-2.11.0+-src/c++/src/objects/mim/CMakeLists.mim.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/mim/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/mim/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/mim/Makefile.mim.lib ncbi-blast-2.11.0+-src/c++/src/objects/mim/mim.asn ncbi-blast-2.11.0+-src/c++/src/objects/mim/mim.def ncbi-blast-2.11.0+-src/c++/src/objects/mim/mim.module ncbi-blast-2.11.0+-src/c++/src/objects/mla/ ncbi-blast-2.11.0+-src/c++/src/objects/mla/.cvsignore.extra ncbi-blast-2.11.0+-src/c++/src/objects/mla/CMakeLists.mla.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/mla/CMakeLists.mlacli.lib.txt ncbi-blast-2.11.0+-src/c++/src/objects/mla/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/mla/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/mla/Makefile.mla.lib ncbi-blast-2.11.0+-src/c++/src/objects/mla/Makefile.mlacli.lib ncbi-blast-2.11.0+-src/c++/src/objects/mla/mla.asn ncbi-blast-2.11.0+-src/c++/src/objects/mla/mla.def ncbi-blast-2.11.0+-src/c++/src/objects/mla/mla.module ncbi-blast-2.11.0+-src/c++/src/objects/mla/mla_client.cpp ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/ ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/CMakeLists.mmdb.lib.txt ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/Makefile.mmdb.lib ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/Makefile.sources ncbi-blast-2.11.0+-src/c++/src/objects/mmdb1/ ncbi-blast-2.11.0+-src/c++/src/objects/mmdb1/Biostruc.cpp ncbi-blast-2.11.0+-src/c++/src/objects/mmdb1/mmdb1.asn ncbi-blast-2.11.0+-src/c++/src/objects/mmdb1/mmdb1.def ncbi-blast-2.11.0+-src/c++/src/objects/mmdb1/mmdb1.module ncbi-blast-2.11.0+-src/c++/src/objects/mmdb2/ ncbi-blast-2.11.0+-src/c++/src/objects/mmdb2/mmdb2.asn ncbi-blast-2.11.0+-src/c++/src/objects/mmdb2/mmdb2.def ncbi-blast-2.11.0+-src/c++/src/objects/mmdb2/mmdb2.module ncbi-blast-2.11.0+-src/c++/src/objects/mmdb3/ ncbi-blast-2.11.0+-src/c++/src/objects/mmdb3/mmdb3.asn ncbi-blast-2.11.0+-src/c++/src/objects/mmdb3/mmdb3.def ncbi-blast-2.11.0+-src/c++/src/objects/mmdb3/mmdb3.module ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime/ ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime/CMakeLists.ncbimime.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime/Makefile.ncbimime.lib ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime/Ncbi_mime_asn1.cpp ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime/ncbimime.asn ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime/ncbimime.def ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime/ncbimime.module ncbi-blast-2.11.0+-src/c++/src/objects/nt_sources.cmd ncbi-blast-2.11.0+-src/c++/src/objects/nt_sources.sh ncbi-blast-2.11.0+-src/c++/src/objects/objprt/ ncbi-blast-2.11.0+-src/c++/src/objects/objprt/CMakeLists.objprt.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/objprt/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/objprt/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/objprt/Makefile.objprt.lib ncbi-blast-2.11.0+-src/c++/src/objects/objprt/objprt.asn ncbi-blast-2.11.0+-src/c++/src/objects/objprt/objprt.def ncbi-blast-2.11.0+-src/c++/src/objects/objprt/objprt.module ncbi-blast-2.11.0+-src/c++/src/objects/omssa/ ncbi-blast-2.11.0+-src/c++/src/objects/omssa/CMakeLists.omssa.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/omssa/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/omssa/MSBioseqSet.cpp ncbi-blast-2.11.0+-src/c++/src/objects/omssa/MSHits.cpp ncbi-blast-2.11.0+-src/c++/src/objects/omssa/MSModSpecSet.cpp ncbi-blast-2.11.0+-src/c++/src/objects/omssa/MSRequest.cpp ncbi-blast-2.11.0+-src/c++/src/objects/omssa/MSResponse.cpp ncbi-blast-2.11.0+-src/c++/src/objects/omssa/MSSearch.cpp ncbi-blast-2.11.0+-src/c++/src/objects/omssa/MSSearchSettings.cpp ncbi-blast-2.11.0+-src/c++/src/objects/omssa/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/omssa/Makefile.omssa.lib ncbi-blast-2.11.0+-src/c++/src/objects/omssa/omssa.asn ncbi-blast-2.11.0+-src/c++/src/objects/omssa/omssa.def ncbi-blast-2.11.0+-src/c++/src/objects/omssa/omssa.module ncbi-blast-2.11.0+-src/c++/src/objects/pcassay/ ncbi-blast-2.11.0+-src/c++/src/objects/pcassay/CMakeLists.pcassay.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/pcassay/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/pcassay/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/pcassay/Makefile.pcassay.lib ncbi-blast-2.11.0+-src/c++/src/objects/pcassay/pcassay.asn ncbi-blast-2.11.0+-src/c++/src/objects/pcassay/pcassay.def ncbi-blast-2.11.0+-src/c++/src/objects/pcassay/pcassay.module ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance/ ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance/CMakeLists.pcsubstance.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance/Makefile.pcsubstance.lib ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance/pcsubstance.asn ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance/pcsubstance.def ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance/pcsubstance.module ncbi-blast-2.11.0+-src/c++/src/objects/proj/ ncbi-blast-2.11.0+-src/c++/src/objects/proj/CMakeLists.proj.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/proj/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/proj/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/proj/Makefile.proj.lib ncbi-blast-2.11.0+-src/c++/src/objects/proj/proj.asn ncbi-blast-2.11.0+-src/c++/src/objects/proj/proj.def ncbi-blast-2.11.0+-src/c++/src/objects/proj/proj.module ncbi-blast-2.11.0+-src/c++/src/objects/pub/ ncbi-blast-2.11.0+-src/c++/src/objects/pub/CMakeLists.pub.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/pub/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/pub/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/pub/Makefile.pub.lib ncbi-blast-2.11.0+-src/c++/src/objects/pub/Pub.cpp ncbi-blast-2.11.0+-src/c++/src/objects/pub/Pub_equiv.cpp ncbi-blast-2.11.0+-src/c++/src/objects/pub/Pub_set.cpp ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.def ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.module ncbi-blast-2.11.0+-src/c++/src/objects/pubmed/ ncbi-blast-2.11.0+-src/c++/src/objects/pubmed/CMakeLists.pubmed.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/pubmed/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/pubmed/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/pubmed/Makefile.pubmed.lib ncbi-blast-2.11.0+-src/c++/src/objects/pubmed/pubmed.asn ncbi-blast-2.11.0+-src/c++/src/objects/pubmed/pubmed.def ncbi-blast-2.11.0+-src/c++/src/objects/pubmed/pubmed.module ncbi-blast-2.11.0+-src/c++/src/objects/remap/ ncbi-blast-2.11.0+-src/c++/src/objects/remap/.cvsignore.extra ncbi-blast-2.11.0+-src/c++/src/objects/remap/CMakeLists.remap.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/remap/CMakeLists.remapcli.lib.txt ncbi-blast-2.11.0+-src/c++/src/objects/remap/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/remap/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/remap/Makefile.remap.lib ncbi-blast-2.11.0+-src/c++/src/objects/remap/Makefile.remapcli.lib ncbi-blast-2.11.0+-src/c++/src/objects/remap/remap.asn ncbi-blast-2.11.0+-src/c++/src/objects/remap/remap.def ncbi-blast-2.11.0+-src/c++/src/objects/remap/remap.module ncbi-blast-2.11.0+-src/c++/src/objects/remap/remap_client.cpp ncbi-blast-2.11.0+-src/c++/src/objects/scoremat/ ncbi-blast-2.11.0+-src/c++/src/objects/scoremat/CMakeLists.scoremat.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/scoremat/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/scoremat/FormatRpsDbParameters.cpp ncbi-blast-2.11.0+-src/c++/src/objects/scoremat/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/scoremat/Makefile.scoremat.lib ncbi-blast-2.11.0+-src/c++/src/objects/scoremat/Pssm.cpp ncbi-blast-2.11.0+-src/c++/src/objects/scoremat/PssmWithParameters.cpp ncbi-blast-2.11.0+-src/c++/src/objects/scoremat/scoremat.asn ncbi-blast-2.11.0+-src/c++/src/objects/scoremat/scoremat.def ncbi-blast-2.11.0+-src/c++/src/objects/scoremat/scoremat.module ncbi-blast-2.11.0+-src/c++/src/objects/seq/ ncbi-blast-2.11.0+-src/c++/src/objects/seq/Bioseq.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seq/CMakeLists.seq.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/seq/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/seq/Delta_ext.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seq/Linkage_evidence.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seq/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/seq/Makefile.seq.lib ncbi-blast-2.11.0+-src/c++/src/objects/seq/Makefile.seq.lib.unix ncbi-blast-2.11.0+-src/c++/src/objects/seq/Makefile.sources ncbi-blast-2.11.0+-src/c++/src/objects/seq/MolInfo.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seq/Pubdesc.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seq/Seq_annot.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seq/Seq_data.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seq/Seq_descr.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seq/Seq_gap.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seq/Seq_inst.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seq/Seq_literal.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seq/Seqdesc.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.def ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.module ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_annot_ref.asn ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_annot_ref.txt ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_id_handle.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_id_mapper.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_id_tree.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_id_tree.hpp ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_loc_from_string.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seq/seqlocinfo.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seq/seqport_util.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seq/so_map.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seq/sofa_map.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/ ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/Dense_diag.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/Dense_seg.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/Product_pos.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/Score.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/Seq_align.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/Seq_align_set.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/Sparse_align.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/Sparse_seg.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/Spliced_exon.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/Spliced_seg.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/Std_seg.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/seqalign.asn ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/seqalign.def ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/seqalign.module ncbi-blast-2.11.0+-src/c++/src/objects/seqblock/ ncbi-blast-2.11.0+-src/c++/src/objects/seqblock/GB_block.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqblock/seqblock.asn ncbi-blast-2.11.0+-src/c++/src/objects/seqblock/seqblock.def ncbi-blast-2.11.0+-src/c++/src/objects/seqblock/seqblock.module ncbi-blast-2.11.0+-src/c++/src/objects/seqcode/ ncbi-blast-2.11.0+-src/c++/src/objects/seqcode/CMakeLists.seqcode.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/seqcode/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/seqcode/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/seqcode/Makefile.seqcode.lib ncbi-blast-2.11.0+-src/c++/src/objects/seqcode/seqcode.asn ncbi-blast-2.11.0+-src/c++/src/objects/seqcode/seqcode.def ncbi-blast-2.11.0+-src/c++/src/objects/seqcode/seqcode.module ncbi-blast-2.11.0+-src/c++/src/objects/seqedit/ ncbi-blast-2.11.0+-src/c++/src/objects/seqedit/CMakeLists.seqedit.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/seqedit/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/seqedit/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/seqedit/Makefile.seqedit.lib ncbi-blast-2.11.0+-src/c++/src/objects/seqedit/seqedit.asn ncbi-blast-2.11.0+-src/c++/src/objects/seqedit/seqedit.def ncbi-blast-2.11.0+-src/c++/src/objects/seqedit/seqedit.module ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/ ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/BioSource.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/Delta_item.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/Gb_qual.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/Gene_ref.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/Genetic_code.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/Genetic_code_table.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/Imp_feat.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/OrgMod.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/OrgName.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/Org_ref.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/PCRPrimerSeq.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/Prot_ref.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/RNA_gen.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/RNA_ref.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/SeqFeatData.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/Seq_feat.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/SubSource.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/Trna_ext.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/VariantProperties.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/Variation_ref.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/adjust_cell_line.pl ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/cell_line.inc ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/cell_line.txt ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/common_tax.inc ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/common_tax.txt ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/ecnum_ambiguous.inc ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/ecnum_ambiguous.txt ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/ecnum_deleted.inc ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/ecnum_deleted.txt ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/ecnum_replaced.inc ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/ecnum_replaced.txt ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/ecnum_specific.inc ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/ecnum_specific.txt ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/gc.inc ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/gc.prt ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/institution_codes.inc ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/institution_codes.txt ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/isolation_sources.inc ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/isolation_sources.txt ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/lat_lon_country.inc ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/lat_lon_country.txt ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/lat_lon_island.inc ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/lat_lon_island.txt ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/lat_lon_water.inc ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/lat_lon_water.txt ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/mk_cell_line.sh ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/prepare_taxtable.sh ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.def ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.module ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/ ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/PDB_seq_id.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/Packed_seqint.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/Packed_seqpnt.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/Patent_seq_id.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/Seq_bond.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/Seq_id.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/Seq_interval.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/Seq_loc.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/Seq_loc_equiv.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/Seq_loc_mix.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/Seq_point.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/Textseq_id.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/accguide.inc ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/accguide.txt ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.def ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.module ncbi-blast-2.11.0+-src/c++/src/objects/seqres/ ncbi-blast-2.11.0+-src/c++/src/objects/seqres/Seq_graph.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqres/seqres.asn ncbi-blast-2.11.0+-src/c++/src/objects/seqres/seqres.def ncbi-blast-2.11.0+-src/c++/src/objects/seqres/seqres.module ncbi-blast-2.11.0+-src/c++/src/objects/seqset/ ncbi-blast-2.11.0+-src/c++/src/objects/seqset/Bioseq_set.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqset/CMakeLists.seqset.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/seqset/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/seqset/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/seqset/Makefile.seqset.lib ncbi-blast-2.11.0+-src/c++/src/objects/seqset/Seq_entry.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqset/gb_release_file.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.def ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.module ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit/ ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit/CMakeLists.seqsplit.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit/Makefile.seqsplit.lib ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit/seqsplit.asn ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit/seqsplit.def ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit/seqsplit.module ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/ ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/BVector_data.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/Scaled_int_multi_data.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/Scaled_real_multi_data.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/SeqTable_column.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/SeqTable_column_info.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/SeqTable_multi_data.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/SeqTable_single_data.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/SeqTable_sparse_index.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/Seq_table.cpp ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/samples/ ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/samples/annot.cdd.asn ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/samples/annot.cdd.table.asn ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/samples/annot.exon.asn ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/samples/annot.exon.table.asn ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/samples/annot.mgc.asn ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/samples/annot.mgc.table.asn ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/samples/annot.snp.asn ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/samples/annot.snp.table.asn ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/samples/annot.snp2.asn ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/samples/annot.snp2.table.asn ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/samples/annot.sts.asn ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/samples/annot.sts.table.asn ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/samples/annot.trna.asn ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/samples/annot.trna.table.asn ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/samples/make_snp_table.pl ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/seqtable.asn ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/seqtable.def ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/seqtable.module ncbi-blast-2.11.0+-src/c++/src/objects/seqtest/ ncbi-blast-2.11.0+-src/c++/src/objects/seqtest/CMakeLists.seqtest.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/seqtest/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/seqtest/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/seqtest/Makefile.seqtest.lib ncbi-blast-2.11.0+-src/c++/src/objects/seqtest/seqtest.asn ncbi-blast-2.11.0+-src/c++/src/objects/seqtest/seqtest.def ncbi-blast-2.11.0+-src/c++/src/objects/seqtest/seqtest.module ncbi-blast-2.11.0+-src/c++/src/objects/submit/ ncbi-blast-2.11.0+-src/c++/src/objects/submit/CMakeLists.submit.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/submit/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/submit/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/submit/Makefile.submit.lib ncbi-blast-2.11.0+-src/c++/src/objects/submit/Seq_submit.cpp ncbi-blast-2.11.0+-src/c++/src/objects/submit/submit.asn ncbi-blast-2.11.0+-src/c++/src/objects/submit/submit.def ncbi-blast-2.11.0+-src/c++/src/objects/submit/submit.module ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/ ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/CMakeLists.local_taxon.lib.txt ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/CMakeLists.taxon1.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/Makefile.local_taxon.lib ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/Makefile.taxon1.lib ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/Taxon1_error.cpp ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/Taxon2_data.cpp ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/cache.cpp ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/cache.hpp ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/ctreecont.cpp ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/ctreecont.hpp ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/local_taxon.cpp ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1.asn ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1.cpp ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1.def ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1.module ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/utils.cpp ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/ ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/CMakeLists.taxon3.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/Makefile.taxon3.lib ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/T3Data.cpp ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/cached_taxon3.cpp ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3.asn ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3.cpp ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3.def ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3.module ncbi-blast-2.11.0+-src/c++/src/objects/tinyseq/ ncbi-blast-2.11.0+-src/c++/src/objects/tinyseq/CMakeLists.tinyseq.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/tinyseq/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/tinyseq/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/tinyseq/Makefile.tinyseq.lib ncbi-blast-2.11.0+-src/c++/src/objects/tinyseq/tinyseq.asn ncbi-blast-2.11.0+-src/c++/src/objects/tinyseq/tinyseq.def ncbi-blast-2.11.0+-src/c++/src/objects/tinyseq/tinyseq.module ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/ ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/CMakeLists.trackmgr.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/CMakeLists.trackmgrcli.lib.txt ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/CMakeLists.trackmgrgridcli.lib.txt ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/Makefile.trackmgr.lib ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/Makefile.trackmgrcli.lib ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/Makefile.trackmgrgridcli.lib ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/TMgr_AnnotCounts.cpp ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/TMgr_ClientInfo.cpp ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/TMgr_DisplayTrackRequest.cpp ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/TMgr_IdentityId.cpp ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/TMgr_ItemResolverRequest.cpp ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/TMgr_LengthStats.cpp ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/TMgr_Message.cpp ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/TMgr_PositionStats.cpp ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/TMgr_Request.cpp ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/blast_client.cpp ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/createremotetrack_client.cpp ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/createtrackset_client.cpp ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/createusertrack_client.cpp ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/displaytrack_client.cpp ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/item_resolver_client.cpp ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/removeusertrack_client.cpp ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/supported_assemblies_client.cpp ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/switch_context_client.cpp ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/tms_exception.cpp ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/track_attrvalue_client.cpp ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/trackmgr.asn ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/trackmgr.def ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/trackmgr.module ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/trackmgr_client.cpp ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/trackset_client.cpp ncbi-blast-2.11.0+-src/c++/src/objects/valerr/ ncbi-blast-2.11.0+-src/c++/src/objects/valerr/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/valerr/CMakeLists.valerr.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/valerr/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/valerr/Makefile.valerr.lib ncbi-blast-2.11.0+-src/c++/src/objects/valerr/ValidErrItem.cpp ncbi-blast-2.11.0+-src/c++/src/objects/valerr/ValidError.cpp ncbi-blast-2.11.0+-src/c++/src/objects/valerr/valerr.asn ncbi-blast-2.11.0+-src/c++/src/objects/valerr/valerr.def ncbi-blast-2.11.0+-src/c++/src/objects/valerr/valerr.module ncbi-blast-2.11.0+-src/c++/src/objects/valid/ ncbi-blast-2.11.0+-src/c++/src/objects/valid/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/valid/CMakeLists.valid.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/valid/Comment_rule.cpp ncbi-blast-2.11.0+-src/c++/src/objects/valid/Comment_set.cpp ncbi-blast-2.11.0+-src/c++/src/objects/valid/Dependent_field_rule.cpp ncbi-blast-2.11.0+-src/c++/src/objects/valid/Field_rule.cpp ncbi-blast-2.11.0+-src/c++/src/objects/valid/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/valid/Makefile.valid.lib ncbi-blast-2.11.0+-src/c++/src/objects/valid/valid.asn ncbi-blast-2.11.0+-src/c++/src/objects/valid/valid.def ncbi-blast-2.11.0+-src/c++/src/objects/valid/valid.module ncbi-blast-2.11.0+-src/c++/src/objects/valid/validrules.inc ncbi-blast-2.11.0+-src/c++/src/objects/valid/validrules.prt ncbi-blast-2.11.0+-src/c++/src/objects/variation/ ncbi-blast-2.11.0+-src/c++/src/objects/variation/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/variation/CMakeLists.variation.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/variation/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/variation/Makefile.variation.lib ncbi-blast-2.11.0+-src/c++/src/objects/variation/Variation.cpp ncbi-blast-2.11.0+-src/c++/src/objects/variation/variation.asn ncbi-blast-2.11.0+-src/c++/src/objects/variation/variation.def ncbi-blast-2.11.0+-src/c++/src/objects/variation/variation.module ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/ ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/ ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/ ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/CMakeLists.search_by_rsid.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/Makefile.search_by_rsid.lib ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid.asn ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid.module ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/ ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/CMakeLists.dbsnp_tooltip_service.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/Makefile.dbsnp_tooltip_service.lib ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service.asn ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service.module ncbi-blast-2.11.0+-src/c++/src/objects/varrep/ ncbi-blast-2.11.0+-src/c++/src/objects/varrep/AaInterval.cpp ncbi-blast-2.11.0+-src/c++/src/objects/varrep/AaLocation.cpp ncbi-blast-2.11.0+-src/c++/src/objects/varrep/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objects/varrep/CMakeLists.varrep.asn.txt ncbi-blast-2.11.0+-src/c++/src/objects/varrep/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objects/varrep/Makefile.varrep.lib ncbi-blast-2.11.0+-src/c++/src/objects/varrep/varrep.asn ncbi-blast-2.11.0+-src/c++/src/objects/varrep/varrep.def ncbi-blast-2.11.0+-src/c++/src/objects/varrep/varrep.module ncbi-blast-2.11.0+-src/c++/src/objmgr/ ncbi-blast-2.11.0+-src/c++/src/objmgr/CMakeLists.objmgr.lib.txt ncbi-blast-2.11.0+-src/c++/src/objmgr/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objmgr/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objmgr/Makefile.objmgr.lib ncbi-blast-2.11.0+-src/c++/src/objmgr/align_ci.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_ci.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_collector.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_finder.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_object.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_object_index.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_selector.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_type_index.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_types_ci.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_base_info.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_ci.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_handle.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_info.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_handle.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_info.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/data_loader.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/data_loader_factory.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/data_source.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/edit_commands_impl.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/edit_saver.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/edits_db_engine.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/edits_db_saver.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/feat_ci.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/gc_assembly_parser.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/graph_ci.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/handle_range.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/handle_range_map.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/heap_scope.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/mapped_feat.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/object_manager.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/objmgr_exception.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_actions.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_impl.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_manager.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_manager_impl.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/priority.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/scope.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_impl.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_info.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_transaction.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_transaction_impl.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_handle.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_mapper.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_ci.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_handle.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_info.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_descr_ci.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_ci.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_handle.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_info.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_feat_handle.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_graph_handle.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_id_sort.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_loc_cvt.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_loc_mapper.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map_ci.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map_switch.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_ci.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_info.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_setters.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_vector.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_vector_ci.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/seqdesc_ci.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/snp_annot_info.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/split/ ncbi-blast-2.11.0+-src/c++/src/objmgr/split/CMakeLists.id2_split.lib.txt ncbi-blast-2.11.0+-src/c++/src/objmgr/split/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objmgr/split/Makefile.id2_split.lib ncbi-blast-2.11.0+-src/c++/src/objmgr/split/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objmgr/split/annot_piece.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/split/asn_sizer.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_params.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/split/chunk_info.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/split/id_range.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/split/object_splitinfo.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/split/size.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/split/split_blob.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/split/split_exceptions.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/split_parser.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/table_field.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_assigner.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_chunk_info.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_handle.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_info.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_info_object.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_split_info.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/unsupp_editsaver.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/util/ ncbi-blast-2.11.0+-src/c++/src/objmgr/util/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objmgr/util/CMakeLists.util.lib.txt ncbi-blast-2.11.0+-src/c++/src/objmgr/util/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objmgr/util/Makefile.util.lib ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_options.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_source_group.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/util/create_defline.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature_edit.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/util/indexer.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/util/obj_sniff.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/util/objutil.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_align_util.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_loc_util.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seqtitle.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp ncbi-blast-2.11.0+-src/c++/src/objmgr/util/weight.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/ ncbi-blast-2.11.0+-src/c++/src/objtools/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objtools/Makefile.in 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ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/unit_test/CMakeLists.align_format_unit_test.app.txt ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/unit_test/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/unit_test/Makefile.align_format_unit_test.app ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/unit_test/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/unit_test/align_format_unit_test.ini ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/unit_test/blast_test_util.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/unit_test/blast_test_util.hpp ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/unit_test/data/ ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/unit_test/data/blastn.vs.ecoli.asn ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/unit_test/data/in_showalign_aln ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/unit_test/data/in_showalign_use_this_gi.asn ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/unit_test/data/in_showalign_use_this_gi_ext.asn ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/unit_test/data/multialign.asn ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/unit_test/data/multialign_nucleotide.asn ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/unit_test/data/nucleotide.fa ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/unit_test/data/protein.fa ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/unit_test/data/query_w_metadata.blast_archive.asn ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/unit_test/data/seqalign.vectorscreen ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/unit_test/data/showdefline-cppunit.aln ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/unit_test/data/tabular_seqalignset.asn 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ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_container.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_seqid.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alndiag.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmap.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmix.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnseq.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alntext.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvec.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/blast/ ncbi-blast-2.11.0+-src/c++/src/objtools/blast/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objtools/blast/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/ ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/CMakeLists.blastdb_format.lib.txt ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/Makefile.blastdb_format.lib ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/unit_test/ ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/unit_test/CMakeLists.blastdb_format_unit_test.app.txt ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/unit_test/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/unit_test/Makefile.blastdb_format_unit_test.app ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/unit_test/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/unit_test/data/ ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/unit_test/data/mask-data-db.paa 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ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/ ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/CMakeLists.ncbi_xreader_cache.lib.txt ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/Makefile.ncbi_xreader_cache.lib ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/ ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/CMakeLists.ncbi_xreader_gicache.lib.txt ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/Makefile.ncbi_xreader_gicache.lib ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.h ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/ncbi_toolkit.h ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id1/ ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id1/CMakeLists.ncbi_xreader_id1.lib.txt ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id1/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id1/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id1/Makefile.ncbi_xreader_id1.lib ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id2/ ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id2/CMakeLists.ncbi_xreader_id2.lib.txt ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id2/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id2/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id2/Makefile.ncbi_xreader_id2.lib ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/ ncbi-blast-2.11.0+-src/c++/src/objtools/edit/CMakeLists.edit.lib.txt ncbi-blast-2.11.0+-src/c++/src/objtools/edit/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objtools/edit/Makefile.edit.lib ncbi-blast-2.11.0+-src/c++/src/objtools/edit/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objtools/edit/apply_object.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/cds_fix.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/dblink_field.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/external_annots.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/field_handler.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gap_trim.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gaps_edit.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gb_block_field.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gene_utils.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/loc_edit.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/mail_report.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/parse_text_options.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/promote.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/publication_edit.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/remote_updater.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/rna_edit.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_edit.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seqid_guesser.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/source_edit.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/string_constraint.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/struc_comm_field.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_desc_field.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_object_description.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/ ncbi-blast-2.11.0+-src/c++/src/objtools/format/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objtools/format/CMakeLists.xformat.lib.txt ncbi-blast-2.11.0+-src/c++/src/objtools/format/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objtools/format/Makefile.xformat.lib ncbi-blast-2.11.0+-src/c++/src/objtools/format/accession_item.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/alignment_item.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/basecount_item.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/cigar_formatter.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/comment_item.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/context.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/contig_item.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/ctrl_items.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/date_item.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/dbsource_item.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/defline_item.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_formatter.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_gather.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_config.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_generator.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_qual_slots.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_seqloc.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/format_item_ostream.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_formatter.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_gather.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/gap_item.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_iter.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/gbseq_formatter.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_gather.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/gene_finder.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_item.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_project_item.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/html_anchor_item.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/inst_info_map.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/inst_info_map.hpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_formatter.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_ostream.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/keywords_item.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/locus_item.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/origin_item.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/ostream_text_ostream.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/primary_item.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/qualifiers.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/reference_item.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/sam_formatter.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/segment_item.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/sequence_item.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/source_item.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/tsa_item.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/version_item.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/format/wgs_item.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/logging/ ncbi-blast-2.11.0+-src/c++/src/objtools/logging/CMakeLists.logging.lib.txt ncbi-blast-2.11.0+-src/c++/src/objtools/logging/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objtools/logging/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objtools/logging/Makefile.logging.lib ncbi-blast-2.11.0+-src/c++/src/objtools/logging/listener.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/logging/message.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/ ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/client/ ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/client/CMakeLists.psg_client.lib.txt ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/client/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/client/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/client/Makefile.psg_client.lib ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/client/Makefile.psg_client_macros.mk ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/client/mpmc_nw.hpp ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.dot ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_impl.hpp ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.hpp ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/client/test/ ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/client/test/CMakeLists.test_psg_client_impl.app.txt ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/client/test/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/client/test/Makefile.in ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/client/test/Makefile.test_psg_client_impl.app ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/client/test/test_psg_client_impl.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/ ncbi-blast-2.11.0+-src/c++/src/objtools/readers/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/objtools/readers/CMakeLists.xobjread.lib.txt ncbi-blast-2.11.0+-src/c++/src/objtools/readers/CMakeLists.xobjreadex.lib.txt 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ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_peek_ahead.hpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_reader.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner.hpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_clustal.hpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_fastagap.hpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_multalign.hpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_nexus.hpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_phylip.hpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_sequin.hpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_util.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_util.hpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/alnread.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/bed_reader.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/best_feat_finder.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/best_feat_finder.hpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/cigar.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/descr_mod_apply.hpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta_aln_builder.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta_aln_builder.hpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta_exception.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta_reader_utils.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/feature_mod_apply.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/feature_mod_apply.hpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/format_guess_ex.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/getfeature.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff2_data.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff2_reader.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff3_reader.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff3_sofa.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff_base_columns.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff_reader.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/glimmer_reader.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gtf_reader.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gvf_reader.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_builtin.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_builtin_config.ini ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_builtin_config.inl ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_config.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_database.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_scope.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/line_error.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/message_listener.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/microarray_reader.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/mod_error.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/mod_reader.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/mod_to_enum.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/mod_to_enum.hpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/phrap.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/psl_data.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/psl_data.hpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/psl_reader.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/read_util.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/reader_base.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/reader_data.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/reader_data.hpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/reader_listener.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/reader_message.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/reader_message_handler.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/reader_message_handler.hpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/readfeat.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/rm_reader.cpp ncbi-blast-2.11.0+-src/c++/src/objtools/readers/seqid_validate.cpp 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ncbi-blast-2.11.0+-src/c++/src/util/unicode_plans.inl ncbi-blast-2.11.0+-src/c++/src/util/unicode_to_ascii.txt ncbi-blast-2.11.0+-src/c++/src/util/utf8.cpp ncbi-blast-2.11.0+-src/c++/src/util/util_exception.cpp ncbi-blast-2.11.0+-src/c++/src/util/util_misc.cpp ncbi-blast-2.11.0+-src/c++/src/util/uttp.cpp ncbi-blast-2.11.0+-src/c++/src/util/xregexp/ ncbi-blast-2.11.0+-src/c++/src/util/xregexp/CMakeLists.txt ncbi-blast-2.11.0+-src/c++/src/util/xregexp/CMakeLists.xregexp.lib.txt ncbi-blast-2.11.0+-src/c++/src/util/xregexp/CMakeLists.xregexp_template_tester.lib.txt ncbi-blast-2.11.0+-src/c++/src/util/xregexp/Makefile.in ncbi-blast-2.11.0+-src/c++/src/util/xregexp/Makefile.xregexp.lib ncbi-blast-2.11.0+-src/c++/src/util/xregexp/Makefile.xregexp_template_tester.lib ncbi-blast-2.11.0+-src/c++/src/util/xregexp/arg_regexp.cpp ncbi-blast-2.11.0+-src/c++/src/util/xregexp/mask_regexp.cpp ncbi-blast-2.11.0+-src/c++/src/util/xregexp/regexp.cpp ncbi-blast-2.11.0+-src/c++/src/util/xregexp/regexp_template_tester.cpp phase `unpack' succeeded after 5.2 seconds starting phase `enter-dir' phase `enter-dir' succeeded after 0.0 seconds starting phase `fix-build-system' WARNING: Unable to find absolute path for "g" WARNING: Unable to find absolute path for "g" WARNING: Unable to find absolute path for "g" WARNING: Unable to find absolute path for "distcc.sh" WARNING: Unable to find absolute path for "distcc.sh" WARNING: Unable to find absolute path for "javac" WARNING: Unable to find absolute path for "javac" WARNING: Unable to find absolute path for "zorba-config" WARNING: Unable to find absolute path for "lsb_release" WARNING: Unable to find absolute path for "printf." 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for nl_langinfo... yes checking for poll... yes checking for putenv... yes checking for readpassphrase... no checking for readv... yes checking for select... yes checking for setenv... yes checking for setitimer... yes checking for setrlimit... yes checking for snprintf... yes checking for statfs... yes checking for statvfs... yes checking for strcasecmp... yes checking for strdup... yes checking for strlcat... no checking for strlcpy... no checking for strndup... yes checking for strnlen... yes checking for strsep... yes checking for strtok_r... yes checking for sysmp... no checking for timegm... yes checking for usleep... yes checking for utimes... yes checking for vasprintf... yes checking for vsnprintf... yes checking for writev... yes checking return type of signal handlers... void checking whether select updates the timeout when interrupted... yes checking whether strcasecmp treats letters as lowercase... yes checking for Linux-like sysinfo with 1 arg... yes checking for getloadavg... yes checking for readdir_r... 3 checking whether stdio supports locking... yes checking for an ANSI C-conforming const... yes checking whether byte ordering is bigendian... no checking whether char is unsigned... no checking size of char... 1 checking size of double... 8 checking size of float... 4 checking size of int... 4 checking size of long... 8 checking size of long double... 16 checking size of long long... 8 checking size of short... 2 checking size of void*... 8 checking size of wchar_t... 4 checking size of __int64... 0 checking for intptr_t... yes checking for uintptr_t... yes checking for struct sockaddr_in.sin_len... no checking for struct tm.tm_zone... yes checking for struct tm.__tm_zone... no checking whether function prototypes can use throw(...)... yes checking for ios(_base)::register_callback... yes checking for SysV semaphores... yes checking for union semun... no checking which way the stack grows... down checking whether the preprocessor supports C99-style variadic macros... yes checking whether the preprocessor supports GNU-style variadic macros... yes checking how to force inlining... inline __attribute__((always_inline)) checking whether /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline supports __attribute__((visibility("default")))... (cached) unnecessary checking whether the C compiler supports C99 restrict... __restrict__ checking whether the C++ compiler supports C99 restrict... __restrict__ checking syntax for declaring thread-local variables... __thread checking whether FIONBIO requires BSD_COMP to be defined... no checking whether INADDR_NONE is defined... yes checking whether unaligned reads are permissible... yes checking whether /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline supports SIMD vector arithmetic... yes checking whether /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline supports -funsafe-math-optimizations... yes checking whether /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline supports -msse4.1... yes checking whether /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline supports -maes... yes checking whether /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline supports -fdiagnostics-color=always... yes checking whether /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 supports __builtin_bswap32... yes checking whether /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 supports __builtin_expect... yes checking whether in-house NCBI resources are available... no checking for library containing gethostbyname... none required checking for library containing connect... none required checking for res_search in -lresolv... yes checking for inet_ntoa_r... no checking for getaddrinfo... yes checking for getnameinfo... yes checking for freehostent... no checking for gethostent_r... yes checking for getipnodebyaddr... no checking for getipnodebyname... no checking for inet_ntop... yes checking for socketpair... yes checking for erf... yes checking for library containing kstat_open... no checking for library containing rstat... no checking for library containing setkey... no checking for library containing dlopen... none required checking for library containing uuid_generate... no checking for library containing fuse_loop... no checking for library containing clock_gettime... none required checking for library containing cplus_demangle... no checking for clock_gettime... yes checking for nanosleep... yes checking for pthread_cond_timedwait_relative_np... no checking for pthread_condattr_setclock... yes checking for sched_yield... yes checking whether CLOCK_MONOTONIC is declared... yes checking whether CLOCK_SGI_CYCLE is declared... no checking whether CLOCK_REALTIME is declared... yes checking for library containing iconv... none required checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for libdw... no checking for libbackward... no checking for libz in /gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13... yes checking for libbz2 in /gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8... yes checking for liblzo2... no checking for libzstd... no checking for libpcre in /gnu/store/fxspvmsmypn6g74mx3dc58qmh16n90vj-pcre-8.45... yes configure: using local mbedTLS copy in connect/mbedtls checking for libgmp... no checking for libgcrypt-config... no checking for libgcrypt... no checking for libhogweed... no checking for libgnutls-config... (cached) no checking for libssl... no checking for krb5-config... no checking for libgssapi_krb5... no checking for libcurl... no checking for reentrant Sybase libraries... no checking for Sybase... no checking for FreeTDS... no checking for mysql_config... no checking for Berkeley DB libraries... no checking for python... /gnu/store/l6fpy0i9hlll9b6k8vy2i2a4cshwz3cv-python-wrapper-3.10.7/bin/python checking for usable Python 3.10 libraries... yes checking for python2.5... no checking for python2.6... no checking for python2.7... no checking for python3... /gnu/store/dy3xh053ahkhrp2jamggq8cpsyvp8mg0-python-3.10.7/bin/python3 checking for usable Python 3.10 libraries... yes checking for perl... /gnu/store/lj75fc25zx2y9pqvfp95la84rdhlj4f8-perl-5.36.0/bin/perl checking for usable Perl libraries... yes checking Boost version... checking for Boost library name tag... -gcc11-mt-d--64 (autodetected) checking for Boost.Regex... no checking for Boost.Spirit... no checking for Boost.System... no checking for Boost.Chrono... no checking for Boost.Filesystem... no checking for Boost.Iostreams... no checking for Boost.Program-Options... no checking for Boost.Serialization... no checking for Boost.Test... no checking for Boost.Thread... no checking for the NCBI C toolkit... no checking for X... no checking for XextCreateExtension in -lXext... no checking for XtMainLoop in -lXt... no checking for XmuMakeAtom in -lXmu... no checking for OpenGL... no checking for wx-config... no checking for wxWidgets... no checking for FastCGI libraries... no checking for FCGX_Accept_r... no checking for NCBI SSS directories in /sss/BUILD... no checking for SP directories... no checking for ORBacus... no checking for ICU... no checking for libexpat... no checking for libsablot... no checking for libxml2... no checking for libxslt... no checking for xsltproc... : checking for libexslt... no checking for Xerces-C++... no checking for Xalan-C++... no checking for Zorba... no checking for libsqlite3... no configure: trying to build the NCBI SRA/VDB Toolkit from GitHub. configure: WARNING: SRA/VDB build failed with status 127 checking for ncbi-vdb... no checking for liboechem... no checking for libdrmaa... no checking for libmuparser... no checking for libhdf5_cpp... no checking for libjpeg... no checking for libpng... no checking for libtiff... no checking for libgif... no checking for libungif... no checking for libXpm... no checking for freetype-config... no checking for libftgl... no checking for libmagic... yes checking for libmimetic... no checking for soapcpp2... no checking for wsdl2h... no checking for libgsoapssl++... no checking for libavrocpp... no checking for USC Cereal... no checking for libsasl2... no checking for libmongoclient... no checking for libmongocxx... no checking for libleveldb... no checking for libgmock... no checking lapacke.h usability... no checking lapacke.h presence... no checking for lapacke.h... no checking lapacke/lapacke.h usability... no checking lapacke/lapacke.h presence... no checking for lapacke/lapacke.h... no checking clapack.h usability... no checking clapack.h presence... no checking for clapack.h... no checking Accelerate/Accelerate.h usability... no checking Accelerate/Accelerate.h presence... no checking for Accelerate/Accelerate.h... no checking for liblapack... no checking for liblmdb... yes checking for libuv... no checking for libssh2... no checking for libcassandra... no checking for libnghttp2... no checking for libh2o... no checking for influxdb-cpp... no checking for libxlsxwriter... no checking for libprotobuf... no checking for libcares... no checking gsl/gsl usability... no checking gsl/gsl presence... no checking for gsl/gsl... no checking for libaws-cpp-sdk-s3... no checking for libhiredis... no checking for libparquet... no checking for librdkafka... no checking for libcppkafka... no configure: looking for configurables below /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++... configure: ...done configure: updating cache config.cache configure: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/config.status config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/api/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/blastinput/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/blastinput/unit_test/Makefile config.status: creating 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/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/common/ncbi_revision.h config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc/ncbiconf_unix.h config.status: executing default commands /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/corelib/ncbicfg.c is updated /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc/common/ncbi_build_ver.h is updated /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/helpers TMPL=run_with_lock -k all make[1]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/build-system/helpers' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/helpers/run_with_lock.c. x86_64-unknown-linux-gnu-gcc -c -g -O2 -DNCBI_APP_BUILT_AS=run_with_lock /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/helpers/run_with_lock.c -o run_with_lock.o x86_64-unknown-linux-gnu-gcc -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib run_with_lock.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread -o run_with_lock /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f run_with_lock /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f run_with_lock /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/run_with_lock make[1]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/build-system/helpers' Prebuilt project_tree_builder not found /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh: line 1: ps: command not found /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh: line 1: ps: command not found /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh: line 1: ps: command not found /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh: line 1: ps: command not found /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh: line 1: ps: command not found /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh: line 1: ps: command not found /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh: line 1: ps: command not found /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh: line 1: ps: command not found /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh: line 1: ps: command not found /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh: line 1: ps: command not found =============================================================================== NCBI C++ Toolkit documentation: Online: http://www.ncbi.nlm.nih.gov/toolkit/doc/book/ Local: ./doc/public/index.html For the available configuration flags run: ./configure --help CFLAGS = -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 CXXFLAGS = -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 CPPFLAGS = -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE LDFLAGS = -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 LIBRARIES: build as dynamic by default FEATURES: PSGLoader GCC MT LFS DLL DLL_BUILD unix WinMain Linux PACKAGES: enabled: Iconv Z BZ2 PCRE MBEDTLS PYTHON PYTHON3 PERL MAGIC LMDB disabled: UUID FUSE LIBUNWIND LIBDW BACKWARD_CPP LocalZ LocalBZ2 LZO ZSTD LocalPCRE GMP GCRYPT NETTLE GNUTLS OPENSSL KRB5 CURL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON25 PYTHON26 PYTHON27 Boost.Chrono Boost.Filesystem Boost.Iostreams Boost.Program-Options Boost.Regex Boost.Serialization Boost.Spirit Boost.System Boost.Test Boost.Test.Included Boost.Thread C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC VDB NGS OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF GIF UNGIF XPM GL2PS FreeType FTGL MIMETIC GSOAP AVRO Cereal SASL2 MONGODB MONGODB3 LEVELDB GMOCK LAPACK LocalLMDB LIBUV LIBSSH2 CASSANDRA NGHTTP2 H2O INFLUXDB LIBXLSXWRITER PROTOBUF GRPC MSGSL AWS_SDK HIREDIS APACHE_ARROW LIBRDKAFKA CPPKAFKA PROJECTS: enabled: cgi serial objects dbapi app algo disabled: local_lbsm connext ncbi_crypt bdb ctools gui gbench Tools / flags / paths: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.mk Configuration header: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc/ncbiconf_unix.h To build everything: cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build && /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make all_r or simply run /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make in the current directory ******* CONFIGURATION SUCCESSFUL ******* phase `configure' succeeded after 233.8 seconds starting phase `patch-generated-file-shebangs' patch-shebang: ./scripts/projects/public/tagprecommit/use_embedded_ptb.py: warning: no binary for interpreter `python2' found in $PATH patch-shebang: ./scripts/projects/testres-kernel/copy_modules.py: warning: no binary for interpreter `python2' found in $PATH phase `patch-generated-file-shebangs' succeeded after 0.5 seconds starting phase `build' if test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.flat; then \ cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build && make -f Makefile.flat; \ elif test -s ""; then \ cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build && make all_p; \ else \ cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build && make all_r; \ fi make[1]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/ctools/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/ctools/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/ctools/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build ctools/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/ctools/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/sra/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/sra/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/sra/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build sra/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/sra/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/gui/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/gui/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/gui/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build gui/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/gui/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/sample/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/sample/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/sample/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build sample/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/sample/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/internal/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/internal/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/internal/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build internal/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/internal/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C corelib -w all_r || exit 5 make[2]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/corelib' make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/corelib' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/corelib/test/Makefile make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/corelib' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make[4] (Makefile.precompile): Nothing to be done for `all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/corelib' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib TMPL=corelib -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/corelib' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/corelib' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib TMPL=test_mt -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/corelib' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/corelib' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/corelib' make[4]: *** No rule to make target '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/corelib' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/corelib' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib TMPL=corelib -w all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/corelib' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_fast.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/request_status.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_message.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/guard.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_cookies.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_url.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbierror.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_toolkit.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/perf_log.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_autoinit.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/interprocess_lock.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/resource_info.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_strings.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/expr.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/request_control.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/request_ctx.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/version.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/syslog.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/stream_utils.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/rwstreambuf.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/plugin_manager_store.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/plugin_manager.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/obj_store.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbitime.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbithr.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbistre.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbistr.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbireg.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiobj.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbimtx.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbimempool.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbifile.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiexpt.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiexec.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbienv.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidll.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag_p.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidbg.cpp. Updating dependency information for ncbicfg.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiatomic.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiargs.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiapp.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_system.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_stack.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_signal.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_safe_static.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_process.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_param.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_config.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/metareg.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/env_reg.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ddumpable.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/blob_storage.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_os_unix.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/blob_storage.cpp -o blob_storage.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ddumpable.cpp -o ddumpable.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/env_reg.cpp -o env_reg.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/metareg.cpp -o metareg.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiapp.cpp: In member function ‘void ncbi::CNcbiApplicationAPI::x_TryMain(ncbi::EAppDiagStream, const char*, int*, bool*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiapp.cpp:630:20: warning: catching polymorphic type ‘class ncbi::CArgHelpException’ by value [-Wcatch-value=] 630 | catch (CArgHelpException) { | ^~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiapp.cpp: In member function ‘int ncbi::CNcbiApplicationAPI::AppMain(int, const char* const*, const char* const*, ncbi::EAppDiagStream, const char*, const string&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiapp.cpp:980:20: warning: catching polymorphic type ‘class ncbi::CArgException’ by value [-Wcatch-value=] 980 | catch (CArgException) { | ^~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiargs.cpp: In member function ‘bool ncbi::CArgDescriptions::x_CreateArg(const string&, const string&, bool, const string&, unsigned int, ncbi::CArgs&, bool, ncbi::CArgValue**) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiargs.cpp:2977:12: warning: catching polymorphic type ‘class ncbi::CArgException’ by value [-Wcatch-value=] 2977 | catch (CArgException) { | ^~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp: In static member function ‘static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp:873:33: warning: ‘ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)’ is deprecated [-Wdeprecated-declarations] 873 | value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:1819:34: note: declared here 1819 | NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag); | ^~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp: In member function ‘void ncbi::CDiagContext::SetProperty(const string&, const string&, ncbi::CDiagContext::EPropertyMode)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp:1816:16: warning: catching polymorphic type ‘class ncbi::CException’ by value [-Wcatch-value=] 1816 | catch (CException) { | ^~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp:1863:66: warning: ‘ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)’ is deprecated [-Wdeprecated-declarations] 1863 | CDiagContextThreadData::GetThreadData().GetProperties( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1864 | CDiagContextThreadData::eProp_Create); /* NCBI_FAKE_WARNING */ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp:1009:1: note: declared here 1009 | CDiagContextThreadData::GetProperties(EGetProperties flag) | ^~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp: In member function ‘std::string ncbi::CDiagContext::GetProperty(const string&, ncbi::CDiagContext::EPropertyMode) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp:1926:66: warning: ‘ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)’ is deprecated [-Wdeprecated-declarations] 1926 | CDiagContextThreadData::GetThreadData().GetProperties( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1927 | CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp:1009:1: note: declared here 1009 | CDiagContextThreadData::GetProperties(EGetProperties flag) | ^~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp: In member function ‘void ncbi::CDiagContext::DeleteProperty(const string&, ncbi::CDiagContext::EPropertyMode)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp:1951:66: warning: ‘ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)’ is deprecated [-Wdeprecated-declarations] 1951 | CDiagContextThreadData::GetThreadData().GetProperties( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1952 | CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp:1009:1: note: declared here 1009 | CDiagContextThreadData::GetProperties(EGetProperties flag) | ^~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp: In member function ‘void ncbi::CDiagContext::PrintProperties()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp:1983:66: warning: ‘ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)’ is deprecated [-Wdeprecated-declarations] 1983 | CDiagContextThreadData::GetThreadData().GetProperties( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 1984 | CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp:1009:1: note: declared here 1009 | CDiagContextThreadData::GetProperties(EGetProperties flag) | ^~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp: In function ‘bool ncbi::s_GetLogConfigBool(ncbi::CTempString, bool, ncbi::CNcbiRegistry*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp:3445:16: warning: catching polymorphic type ‘class ncbi::CStringException’ by value [-Wcatch-value=] 3445 | catch (CStringException) { | ^~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp: In static member function ‘static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages, const char*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp:3587:47: warning: ‘virtual bool ncbi::CNcbiApplicationAPI::SetupDiag_AppSpecific()’ is deprecated [-Wdeprecated-declarations] 3587 | app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */ | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbifile.hpp:55, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:395:34: note: declared here 395 | NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void); | ^~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp: In member function ‘bool ncbi::SDiagMessage::x_ParseExtraArgs(const string&, size_t)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp:4748:12: warning: catching polymorphic type ‘class ncbi::CStringException’ by value [-Wcatch-value=] 4748 | catch (CStringException) { | ^~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp:4760:16: warning: catching polymorphic type ‘class ncbi::CStringException’ by value [-Wcatch-value=] 4760 | catch (CStringException) { | ^~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp: In member function ‘bool ncbi::SDiagMessage::ParseMessage(const string&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp:4847:20: warning: catching polymorphic type ‘class ncbi::CTimeException’ by value [-Wcatch-value=] 4847 | catch (CTimeException) { | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp:5033:28: warning: catching polymorphic type ‘class ncbi::CStringException’ by value [-Wcatch-value=] 5033 | catch (CStringException) { | ^~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp:5119:12: warning: catching polymorphic type ‘class ncbi::CException’ by value [-Wcatch-value=] 5119 | catch (CException) { | ^~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp: In member function ‘virtual void ncbi::CFileHandleDiagHandler::Reopen(ncbi::CDiagHandler::TReopenFlags)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp:6404:16: warning: catching polymorphic type ‘class ncbi::CException’ by value [-Wcatch-value=] 6404 | catch (CException) { | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/version_api.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/version.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp: In instantiation of ‘static void ncbi::CStringPairs::Parse(ncbi::CStringPairs::TStrPairs&, ncbi::CTempString, ncbi::CTempString, ncbi::CTempString, ncbi::IStringDecoder*, EOwnership, ncbi::NStr::EMergeDelims) [with TContainer = std::__cxx11::list, std::__cxx11::basic_string > >; ncbi::CStringPairs::TStrPairs = std::__cxx11::list, std::__cxx11::basic_string > >; EOwnership = ENcbiOwnership]’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:4589:14: required from ‘void ncbi::CStringPairs::Parse(ncbi::CTempString, ncbi::NStr::EMergeDelims) [with TContainer = std::__cxx11::list, std::__cxx11::basic_string > >]’ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp:4746:21: required from here /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:4629:24: warning: catching polymorphic type ‘class ncbi::CStringException’ by value [-Wcatch-value=] 4629 | catch (CStringException) { | ^~~~~~~~~~~~~~~~ +-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include ncbicfg.c -o ncbicfg.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbidll.cpp -o ncbidll.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbienv.cpp -o ncbienv.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbifile.cpp -o ncbifile.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbitime.cpp: In member function ‘bool ncbi::CTime::x_Init(const string&, const ncbi::CTimeFormat&, ncbi::CTime::EErrAction)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbitime.cpp:691:20: warning: catching polymorphic type ‘class ncbi::CStringException’ by value [-Wcatch-value=] 691 | catch (CStringException) { | ^~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbitime.cpp:710:20: warning: catching polymorphic type ‘class ncbi::CStringException’ by value [-Wcatch-value=] 710 | catch (CStringException) { | ^~~~~~~~~~~~~~~~ Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbireg.cpp -o ncbireg.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbistr.cpp -o ncbistr.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbistre.cpp -o ncbistre.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbithr.cpp -o ncbithr.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbitime.cpp -o ncbitime.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/obj_store.cpp -o obj_store.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSETIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/request_ctx.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/request_ctx.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp: In instantiation of ‘static void ncbi::CStringPairs::Parse(ncbi::CStringPairs::TStrPairs&, ncbi::CTempString, ncbi::CTempString, ncbi::CTempString, ncbi::IStringDecoder*, EOwnership, ncbi::NStr::EMergeDelims) [with TContainer = std::map, std::__cxx11::basic_string, ncbi::PNocase_Generic > >; ncbi::CStringPairs::TStrPairs = std::map, std::__cxx11::basic_string, ncbi::PNocase_Generic > >; EOwnership = ENcbiOwnership]’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/request_ctx.cpp:844:37: required from here /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:4629:24: warning: catching polymorphic type ‘class ncbi::CStringException’ by value [-Wcatch-value=] 4629 | catch (CStringException) { | ^~~~~~~~~~~~~~~~ _BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/stream_utils.cpp -o stream_utils.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/syslog.cpp -o syslog.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/version.cpp -o version.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/request_ctx.cpp -o request_ctx.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/request_control.cpp -o request_control.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/expr.cpp -o expr.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_strings.c -o ncbi_strings.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blasIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/resource_info.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp: In instantiation of ‘static void ncbi::CStringPairs::Parse(ncbi::CStringPairs::TStrPairs&, ncbi::CTempString, ncbi::CTempString, ncbi::CTempString, ncbi::IStringDecoder*, EOwnership, ncbi::NStr::EMergeDelims) [with TContainer = std::multimap, std::__cxx11::basic_string >; ncbi::CStringPairs::TStrPairs = std::multimap, std::__cxx11::basic_string >; EOwnership = ENcbiOwnership]’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:4589:14: required from ‘void ncbi::CStringPairs::Parse(ncbi::CTempString, ncbi::NStr::EMergeDelims) [with TContainer = std::multimap, std::__cxx11::basic_string >]’ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/resource_info.cpp:326:39: required from here /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:4629:24: warning: catching polymorphic type ‘class ncbi::CStringException’ by value [-Wcatch-value=] 4629 | catch (CStringException) { | ^~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_url.cpp: In member function ‘void ncbi::CUrl::SetUrl(const string&, const ncbi::IUrlEncoder*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_url.cpp:460:20: warning: catching polymorphic type ‘class ncbi::CStringException’ by value [-Wcatch-value=] 460 | catch (CStringException) { | ^~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_cookies.cpp: In member function ‘bool ncbi::CHttpCookie::Validate() const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_cookies.cpp:327:12: warning: catching polymorphic type ‘class ncbi::CHttpCookieException’ by value [-Wcatch-value=] 327 | catch (CHttpCookieException) { | ^~~~~~~~~~~~~~~~~~~~ t+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/resource_info.cpp -o resource_info.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/interprocess_lock.cpp -o interprocess_lock.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_autoinit.cpp -o ncbi_autoinit.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/perf_log.cpp -o perf_log.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_toolkit.cpp -o ncbi_toolkit.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbierror.cpp -o ncbierror.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_url.cpp -o ncbi_url.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_cookies.cpp -o ncbi_cookies.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/guard.cpp -o guard.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_message.cpp -o ncbi_message.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/request_status.cpp -o request_status.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/ncbi_fast.cpp -o ncbi_fast.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxncbi.so .libxncbi.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxncbi.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o request_status.o ncbi_fast.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxncbi.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxncbi.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxncbi.so ln -f .xncbi.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xncbi.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/corelib' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib TMPL=test_mt -w all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/corelib' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/test_mt.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/corelib/test_mt.cpp -o test_mt.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libtest_mt.so .libtest_mt.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libtest_mt.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC test_mt.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libtest_mt.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libtest_mt.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libtest_mt.so ln -f .test_mt.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.test_mt.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/corelib' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/corelib' make[4]: *** No rule to make target '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/corelib' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/corelib' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/corelib' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C test -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/corelib/test' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/corelib/test' make[2]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/corelib' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C util -w all_r || exit 5 make[2]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/regexp/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/regexp/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/regexp/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build regexp/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/regexp/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/diff/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/diff/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/diff/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build diff/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/diff/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/image/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/image/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/image/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build image/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/image/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/qparse/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/qparse/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/qparse/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build qparse/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/qparse/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/test/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/demo/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/demo/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/demo/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build demo/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/demo/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util TMPL=util -w export-headers make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util' make[3]: Nothing to be done for 'export-headers'. make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util TMPL=util -w all make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/crc32_sse.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/multipattern_search.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/cache_async.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/file_manifest.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/stream_source.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/retry_ctx.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/table_printer.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/histogram_binning.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/util_misc.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/rangelist.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/distribution.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/scheduler.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/thread_pool_ctrl.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/thread_pool.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/itransaction.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/multi_writer.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/uttp.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/util_exception.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/line_reader.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/ncbi_cache.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/mutex_pool.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/miscmath.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/transmissionrw.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/static_set.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/sgml_entity.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/thread_nonstop.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/dictionary_util.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/dictionary.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/unicode.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/file_obsolete.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/md5.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/ascii85.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/format_guess.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/logrotate.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/strsearch.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/ddump_viewer.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/thread_pool_old.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/smalldns.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/itree.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/strbuffer.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/bytesrc.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/checksum_farmhash.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/checksum_cityhash.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/checksum.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/utf8.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/random_gen.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/random_gen.cpp -o random_gen.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/utf8.cpp -o utf8.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/checksum.cpp -o checksum.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/checksum_cityhash.cpp -o checksum_cityhash.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/checksum_farmhash.cpp -o checksum_farmhash.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/bytesrc.cpp -o bytesrc.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/strbuffer.cpp -o strbuffer.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/itree.cpp -o itree.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/smalldns.cpp -o smalldns.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/thread_pool_old.cpp -o thread_pool_old.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/ddump_viewer.cpp -o ddump_viewer.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/strsearch.cpp -o strsearch.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/logrotate.cpp -o logrotate.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/format_guess.cpp -o format_guess.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/ascii85.cpp -o ascii85.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include 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/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/table_printer.cpp -o table_printer.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/retry_ctx.cpp -o retry_ctx.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/stream_source.cpp -o stream_source.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/file_manifest.cpp -o file_manifest.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/cache_async.cpp -o cache_async.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/multipattern_search.cpp -o multipattern_search.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/crc32_sse.cpp -o crc32_sse.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxutil.so .libxutil.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxutil.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC random_gen.o utf8.o checksum.o checksum_cityhash.o checksum_farmhash.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o cache_async.o multipattern_search.o crc32_sse.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxutil.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxutil.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxutil.so ln -f .xutil.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xutil.dep make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C regexp -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/regexp' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/regexp' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C xregexp -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/xregexp' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/xregexp' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/xregexp TMPL=xregexp -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/xregexp' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/xregexp' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/xregexp' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/xregexp' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/xregexp TMPL=xregexp -w all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/xregexp' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/xregexp/mask_regexp.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/xregexp/arg_regexp.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/xregexp/regexp.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/fxspvmsmypn6g74mx3dc58qmh16n90vj-pcre-8.45/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/xregexp/regexp.cpp -o regexp.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/fxspvmsmypn6g74mx3dc58qmh16n90vj-pcre-8.45/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/fxspvmsmypn6g74mx3dc58qmh16n90vj-pcre-8.45/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxregexp.so .libxregexp.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxregexp.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/fxspvmsmypn6g74mx3dc58qmh16n90vj-pcre-8.45/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC regexp.o arg_regexp.o mask_regexp.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/gnu/store/fxspvmsmypn6g74mx3dc58qmh16n90vj-pcre-8.45/lib -lpcre /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxregexp.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxregexp.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxregexp.so ln -f .xregexp.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xregexp.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/xregexp' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/xregexp TMPL=xregexp_template_tester -w all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/xregexp' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/xregexp/regexp_template_tester.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxregexp_template_tester.so .libxregexp_template_tester.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxregexp_template_tester.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/fxspvmsmypn6g74mx3dc58qmh16n90vj-pcre-8.45/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC regexp_template_tester.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/gnu/store/fxspvmsmypn6g74mx3dc58qmh16n90vj-pcre-8.45/lib -lpcre /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxregexp_template_tester.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxregexp_template_tester.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxregexp_template_tester.so ln -f .xregexp_template_tester.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xregexp_template_tester.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/xregexp' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/xregexp' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/xregexp' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C compress -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/compress' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C api -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/compress/api' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api TMPL=compress -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/compress/api' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/compress/api' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api TMPL=compress -w all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/compress/api' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/archive_zip.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/archive_.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/archive.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/tar.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/reader_zlib.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/lzo.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/zlib.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/bzip2.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/stream_util.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/streambuf.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/stream.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/compress.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/compress.cpp -o compress.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/stream.cpp -o stream.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/zlib.cpp -o zlib.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/lzo.cpp -o lzo.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/tar.cpp -o tar.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/archive.cpp -o archive.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/archive_zip.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c: In function ‘ncbi::tinfl_status ncbi::tinfl_decompress(ncbi::tinfl_decompressor*, const mz_uint8*, size_t*, ncbi::mz_uint8*, ncbi::mz_uint8*, size_t*, ncbi::mz_uint32)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1531:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1531 | for ( i = 0; i <= 143; ++i) *p++ = 8; for ( ; i <= 255; ++i) *p++ = 9; for ( ; i <= 279; ++i) *p++ = 7; for ( ; i <= 287; ++i) *p++ = 8; | ^~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1531:47: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1531 | for ( i = 0; i <= 143; ++i) *p++ = 8; for ( ; i <= 255; ++i) *p++ = 9; for ( ; i <= 279; ++i) *p++ = 7; for ( ; i <= 287; ++i) *p++ = 8; | ^~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c: In function ‘void ncbi::tdefl_start_dynamic_block(ncbi::tdefl_compressor*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1953:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1953 | if (d->m_pOutput_buf < d->m_pOutput_buf_end) \ | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2024:3: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2024 | TDEFL_PUT_BITS(2, 2); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1955:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1955 | d->m_bit_buffer >>= 8; \ | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2024:3: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2024 | TDEFL_PUT_BITS(2, 2); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1953:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1953 | if (d->m_pOutput_buf < d->m_pOutput_buf_end) \ | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2026:3: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2026 | TDEFL_PUT_BITS(num_lit_codes - 257, 5); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1955:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1955 | d->m_bit_buffer >>= 8; \ | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2026:3: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2026 | TDEFL_PUT_BITS(num_lit_codes - 257, 5); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1953:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1953 | if (d->m_pOutput_buf < d->m_pOutput_buf_end) \ | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2027:3: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2027 | TDEFL_PUT_BITS(num_dist_codes - 1, 5); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1955:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1955 | d->m_bit_buffer >>= 8; \ | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2027:3: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2027 | TDEFL_PUT_BITS(num_dist_codes - 1, 5); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1953:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1953 | if (d->m_pOutput_buf < d->m_pOutput_buf_end) \ | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2030:55: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2030 | num_bit_lengths = MZ_MAX(4, (num_bit_lengths + 1)); TDEFL_PUT_BITS(num_bit_lengths - 4, 4); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1955:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1955 | d->m_bit_buffer >>= 8; \ | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2030:55: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2030 | num_bit_lengths = MZ_MAX(4, (num_bit_lengths + 1)); TDEFL_PUT_BITS(num_bit_lengths - 4, 4); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1953:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1953 | if (d->m_pOutput_buf < d->m_pOutput_buf_end) \ | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2031:46: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2031 | for (i = 0; (int)i < num_bit_lengths; i++) TDEFL_PUT_BITS(d->m_huff_code_sizes[2][s_tdefl_packed_code_size_syms_swizzle[i]], 3); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1955:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1955 | d->m_bit_buffer >>= 8; \ | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2031:46: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2031 | for (i = 0; (int)i < num_bit_lengths; i++) TDEFL_PUT_BITS(d->m_huff_code_sizes[2][s_tdefl_packed_code_size_syms_swizzle[i]], 3); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1953:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1953 | if (d->m_pOutput_buf < d->m_pOutput_buf_end) \ | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2036:5: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2036 | TDEFL_PUT_BITS(d->m_huff_codes[2][code], d->m_huff_code_sizes[2][code]); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1955:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1955 | d->m_bit_buffer >>= 8; \ | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2036:5: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2036 | TDEFL_PUT_BITS(d->m_huff_codes[2][code], d->m_huff_code_sizes[2][code]); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1953:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1953 | if (d->m_pOutput_buf < d->m_pOutput_buf_end) \ | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2037:21: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2037 | if (code >= 16) TDEFL_PUT_BITS(packed_code_sizes[packed_code_sizes_index++], "\02\03\07"[code - 16]); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1955:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1955 | d->m_bit_buffer >>= 8; \ | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2037:21: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2037 | if (code >= 16) TDEFL_PUT_BITS(packed_code_sizes[packed_code_sizes_index++], "\02\03\07"[code - 16]); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c: In function ‘void ncbi::tdefl_start_static_block(ncbi::tdefl_compressor*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1953:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1953 | if (d->m_pOutput_buf < d->m_pOutput_buf_end) \ | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2056:3: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2056 | TDEFL_PUT_BITS(1, 2); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1955:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1955 | d->m_bit_buffer >>= 8; \ | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2056:3: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2056 | TDEFL_PUT_BITS(1, 2); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c: In function ‘ncbi::mz_bool ncbi::tdefl_compress_lz_codes(ncbi::tdefl_compressor*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1953:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1953 | if (d->m_pOutput_buf < d->m_pOutput_buf_end) \ | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2141:5: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2141 | TDEFL_PUT_BITS((mz_uint)bit_buffer & mz_bitmasks[n], n); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1955:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1955 | d->m_bit_buffer >>= 8; \ | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2141:5: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2141 | TDEFL_PUT_BITS((mz_uint)bit_buffer & mz_bitmasks[n], n); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1953:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1953 | if (d->m_pOutput_buf < d->m_pOutput_buf_end) \ | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2146:3: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2146 | TDEFL_PUT_BITS(d->m_huff_codes[0][256], d->m_huff_code_sizes[0][256]); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1955:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1955 | d->m_bit_buffer >>= 8; \ | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2146:3: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2146 | TDEFL_PUT_BITS(d->m_huff_codes[0][256], d->m_huff_code_sizes[0][256]); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c: In function ‘int ncbi::tdefl_flush_block(ncbi::tdefl_compressor*, int)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1953:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1953 | if (d->m_pOutput_buf < d->m_pOutput_buf_end) \ | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2225:5: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2225 | TDEFL_PUT_BITS(0x78, 8); TDEFL_PUT_BITS(0x01, 8); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1955:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1955 | d->m_bit_buffer >>= 8; \ | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2225:5: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2225 | TDEFL_PUT_BITS(0x78, 8); TDEFL_PUT_BITS(0x01, 8); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1953:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1953 | if (d->m_pOutput_buf < d->m_pOutput_buf_end) \ | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2225:30: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2225 | TDEFL_PUT_BITS(0x78, 8); TDEFL_PUT_BITS(0x01, 8); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1955:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1955 | d->m_bit_buffer >>= 8; \ | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2225:30: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2225 | TDEFL_PUT_BITS(0x78, 8); TDEFL_PUT_BITS(0x01, 8); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1953:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1953 | if (d->m_pOutput_buf < d->m_pOutput_buf_end) \ | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2228:3: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2228 | TDEFL_PUT_BITS(flush == TDEFL_FINISH, 1); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1955:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1955 | d->m_bit_buffer >>= 8; \ | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2228:3: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2228 | TDEFL_PUT_BITS(flush == TDEFL_FINISH, 1); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1953:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1953 | if (d->m_pOutput_buf < d->m_pOutput_buf_end) \ | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2240:5: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2240 | TDEFL_PUT_BITS(0, 2); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1955:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1955 | d->m_bit_buffer >>= 8; \ | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2240:5: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2240 | TDEFL_PUT_BITS(0, 2); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1953:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1953 | if (d->m_pOutput_buf < d->m_pOutput_buf_end) \ | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2241:25: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2241 | if (d->m_bits_in) { TDEFL_PUT_BITS(0, 8 - d->m_bits_in); } | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1955:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1955 | d->m_bit_buffer >>= 8; \ | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2241:25: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2241 | if (d->m_bits_in) { TDEFL_PUT_BITS(0, 8 - d->m_bits_in); } | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1953:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1953 | if (d->m_pOutput_buf < d->m_pOutput_buf_end) \ | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2244:7: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2244 | TDEFL_PUT_BITS(d->m_total_lz_bytes & 0xFFFF, 16); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1955:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1955 | d->m_bit_buffer >>= 8; \ | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2244:7: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2244 | TDEFL_PUT_BITS(d->m_total_lz_bytes & 0xFFFF, 16); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1953:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1953 | if (d->m_pOutput_buf < d->m_pOutput_buf_end) \ | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2248:7: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2248 | TDEFL_PUT_BITS(d->m_dict[(d->m_lz_code_buf_dict_pos + i) & TDEFL_LZ_DICT_SIZE_MASK], 8); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1955:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1955 | d->m_bit_buffer >>= 8; \ | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2248:7: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2248 | TDEFL_PUT_BITS(d->m_dict[(d->m_lz_code_buf_dict_pos + i) & TDEFL_LZ_DICT_SIZE_MASK], 8); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1953:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1953 | if (d->m_pOutput_buf < d->m_pOutput_buf_end) \ | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2262:27: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2262 | if (d->m_bits_in) { TDEFL_PUT_BITS(0, 8 - d->m_bits_in); } | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1955:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1955 | d->m_bit_buffer >>= 8; \ | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2262:27: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2262 | if (d->m_bits_in) { TDEFL_PUT_BITS(0, 8 - d->m_bits_in); } | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1953:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1953 | if (d->m_pOutput_buf < d->m_pOutput_buf_end) \ | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2263:106: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2263 | if (d->m_flags & TDEFL_WRITE_ZLIB_HEADER) { mz_uint i, a = d->m_adler32; for (i = 0; i < 4; i++) { TDEFL_PUT_BITS((a >> 24) & 0xFF, 8); a <<= 8; } } | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1955:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1955 | d->m_bit_buffer >>= 8; \ | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2263:106: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2263 | if (d->m_flags & TDEFL_WRITE_ZLIB_HEADER) { mz_uint i, a = d->m_adler32; for (i = 0; i < 4; i++) { TDEFL_PUT_BITS((a >> 24) & 0xFF, 8); a <<= 8; } } | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1953:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1953 | if (d->m_pOutput_buf < d->m_pOutput_buf_end) \ | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2267:25: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2267 | mz_uint i, z = 0; TDEFL_PUT_BITS(0, 3); if (d->m_bits_in) { TDEFL_PUT_BITS(0, 8 - d->m_bits_in); } for (i = 2; i; --i, z ^= 0xFFFF) { TDEFL_PUT_BITS(z & 0xFFFF, 16); } | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1955:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1955 | d->m_bit_buffer >>= 8; \ | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2267:25: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2267 | mz_uint i, z = 0; TDEFL_PUT_BITS(0, 3); if (d->m_bits_in) { TDEFL_PUT_BITS(0, 8 - d->m_bits_in); } for (i = 2; i; --i, z ^= 0xFFFF) { TDEFL_PUT_BITS(z & 0xFFFF, 16); } | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1953:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1953 | if (d->m_pOutput_buf < d->m_pOutput_buf_end) \ | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2267:67: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2267 | mz_uint i, z = 0; TDEFL_PUT_BITS(0, 3); if (d->m_bits_in) { TDEFL_PUT_BITS(0, 8 - d->m_bits_in); } for (i = 2; i; --i, z ^= 0xFFFF) { TDEFL_PUT_BITS(z & 0xFFFF, 16); } | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1955:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1955 | d->m_bit_buffer >>= 8; \ | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2267:67: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2267 | mz_uint i, z = 0; TDEFL_PUT_BITS(0, 3); if (d->m_bits_in) { TDEFL_PUT_BITS(0, 8 - d->m_bits_in); } for (i = 2; i; --i, z ^= 0xFFFF) { TDEFL_PUT_BITS(z & 0xFFFF, 16); } | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1953:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1953 | if (d->m_pOutput_buf < d->m_pOutput_buf_end) \ | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2267:141: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2267 | mz_uint i, z = 0; TDEFL_PUT_BITS(0, 3); if (d->m_bits_in) { TDEFL_PUT_BITS(0, 8 - d->m_bits_in); } for (i = 2; i; --i, z ^= 0xFFFF) { TDEFL_PUT_BITS(z & 0xFFFF, 16); } | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:1955:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1955 | d->m_bit_buffer >>= 8; \ | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2267:141: note: in expansion of macro ‘TDEFL_PUT_BITS’ 2267 | mz_uint i, z = 0; TDEFL_PUT_BITS(0, 3); if (d->m_bits_in) { TDEFL_PUT_BITS(0, 8 - d->m_bits_in); } for (i = 2; i; --i, z ^= 0xFFFF) { TDEFL_PUT_BITS(z & 0xFFFF, 16); } | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c: In function ‘void ncbi::tdefl_find_match(ncbi::tdefl_compressor*, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint, ncbi::mz_uint*, ncbi::mz_uint*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2327:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2327 | if (!dist) break; q = (const mz_uint16*)(d->m_dict + probe_pos); if (TDEFL_READ_UNALIGNED_WORD(q) != s01) continue; p = s; probe_len = 32; | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/miniz/miniz.c:2327:23: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2327 | if (!dist) break; q = (const mz_uint16*)(d->m_dict + probe_pos); if (TDEFL_READ_UNALIGNED_WORD(q) != s01) continue; p = s; probe_len = 32; | ^ IC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/archive_.cpp -o archive_.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxcompress.so .libxcompress.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxcompress.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxcompress.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxcompress.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxcompress.so ln -f .xcompress.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xcompress.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/compress/api' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/compress/api' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/compress' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C diff -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/diff' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/diff' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C image -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/image' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/image' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C tables -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/tables' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/tables/test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/tables/test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/tables/test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/tables/test/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/tables TMPL=tables -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/tables' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/tables' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/tables TMPL=tables -w all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/tables' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/tables/raw_scoremat.c. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libtables.so .libtables.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libtables.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC raw_scoremat.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libtables.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libtables.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libtables.so ln -f .tables.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.tables.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/tables' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C test -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/tables/test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/tables/test' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/tables' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C sequtil -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/sequtil' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/sequtil TMPL=sequtil -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/sequtil' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/sequtil' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/sequtil TMPL=sequtil -w all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/sequtil' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/sequtil/sequtil_shared.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/sequtil/sequtil_tables.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/sequtil/sequtil_manip.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/sequtil/sequtil_convert.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/sequtil/sequtil.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libsequtil.so .libsequtil.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libsequtil.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libsequtil.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libsequtil.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libsequtil.so ln -f .sequtil.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.sequtil.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/sequtil' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/sequtil' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C bitset -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/bitset' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/bitset/test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/bitset/test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/bitset/test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/bitset/test/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/bitset/demo/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/bitset/demo/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/bitset/demo/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build demo/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/bitset/demo/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C test -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/bitset/test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/bitset/test' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C demo -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/bitset/demo' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/bitset/demo' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/bitset' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C qparse -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/qparse' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/qparse' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C lmdb -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/lmdb' NOTE: Skipping project lmdb due to unmet requirements: LocalLMDB make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/lmdb' make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/lmdb' make[5]: *** No rule to make target '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/LocalLMDB.enabled', needed by 'requirements'. Stop. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/lmdb' NOTE: skipping project "lmdb" due to unmet requirements make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/lmdb' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/lmdb' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/lmdb' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/lmdb' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C lmdbxx -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/lmdbxx' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/lmdbxx TMPL=lmdbxx_sample -w all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/lmdbxx' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/lmdbxx/example.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/lmdbxx -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=lmdbxx_sample /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/util/lmdbxx/example.cpp -o example.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 example.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxncbi -llmdb -lpthread -lm -lpthread -o lmdbxx_sample /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f lmdbxx_sample /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f lmdbxx_sample /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/lmdbxx_sample make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/lmdbxx' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/lmdbxx' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C test -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/test' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/test' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C demo -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/demo' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util/demo' make[2]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/util' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C connect -w all_r || exit 5 make[2]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect' make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ext/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ext/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ext/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build ext/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/ext/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/test/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/daemons/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/daemons/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/daemons/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build daemons/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/daemons/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect TMPL=connssl -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect TMPL=connect -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect TMPL=xxconnect -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect TMPL=xconnect -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect TMPL=xthrserv -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect TMPL=connssl -w all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p mbedtls Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ssl_tls.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ssl_ticket.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ssl_srv.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ssl_cookie.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ssl_cli.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ssl_cache.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/net_sockets.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/debug.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/x509write_csr.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/x509write_crt.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/x509_csr.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/x509_crt.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/x509_crl.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/x509_create.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/x509.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/pkcs11.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/certs.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/xtea.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/version_features.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls_version.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/timing.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/threading.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/sha512.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/sha256.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/sha1.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/rsa_internal.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/rsa.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ripemd160.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/platform.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/pkwrite.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/pkparse.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/pkcs5.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/pkcs12.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/pk_wrap.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/pk.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/pem.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/padlock.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/oid.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/memory_buffer_alloc.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/md_wrap.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls_md5.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/md4.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/md2.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/md.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/hmac_drbg.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/havege.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/gcm.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/error.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/entropy_poll.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/entropy.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ecp_curves.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ecp.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ecjpake.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ecdsa.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ecdh.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/dhm.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/des.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ctr_drbg.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/cmac.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/cipher_wrap.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/cipher.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ccm.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/camellia.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/blowfish.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/bignum.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/base64.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/asn1write.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/asn1parse.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/arc4.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/aesni.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/aes.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_tls.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_mbedtls.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_gnutls.c. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_gnutls.c -o ncbi_gnutls.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_mbedtls.c -o ncbi_mbedtls.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_tls.c -o ncbi_tls.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/aes.c -o mbedtls/aes.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/aesni.c -o mbedtls/aesni.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/arc4.c -o mbedtls/arc4.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/asn1parse.c -o mbedtls/asn1parse.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/asn1write.c -o mbedtls/asn1write.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/base64.c -o mbedtls/base64.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE 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mbedtls/certs.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/pkcs11.c -o mbedtls/pkcs11.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/x509.c -o mbedtls/x509.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/x509_create.c -o mbedtls/x509_create.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/x509_crl.c -o mbedtls/x509_crl.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/x509_crt.c -o mbedtls/x509_crt.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/x509_csr.c -o mbedtls/x509_csr.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/x509write_crt.c -o mbedtls/x509write_crt.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/x509write_csr.c -o mbedtls/x509write_csr.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/debug.c -o mbedtls/debug.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ssl_tls.c:1040:67: warning: argument 2 of type ‘unsigned char[36]’ with mismatched bound [-Warray-parameter=] 1040 | void ssl_calc_verify_tls( mbedtls_ssl_context *ssl, unsigned char hash[36] ) | ~~~~~~~~~~~~~~^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ssl_tls.c:477:57: note: previously declared as ‘unsigned char *’ 477 | static void ssl_calc_verify_tls( mbedtls_ssl_context *, unsigned char * ); | ^~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ssl_tls.c:1068:74: warning: argument 2 of type ‘unsigned char[32]’ with mismatched bound [-Warray-parameter=] 1068 | void ssl_calc_verify_tls_sha256( mbedtls_ssl_context *ssl, unsigned char hash[32] ) | ~~~~~~~~~~~~~~^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ssl_tls.c:484:63: note: previously declared as ‘unsigned char *’ 484 | static void ssl_calc_verify_tls_sha256( mbedtls_ssl_context *,unsigned char * ); | ^~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ssl_tls.c:1089:74: warning: argument 2 of type ‘unsigned char[48]’ with mismatched bound [-Warray-parameter=] 1089 | void ssl_calc_verify_tls_sha384( mbedtls_ssl_context *ssl, unsigned char hash[48] ) | ~~~~~~~~~~~~~~^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ssl_tls.c:490:64: note: previously declared as ‘unsigned char *’ 490 | static void ssl_calc_verify_tls_sha384( mbedtls_ssl_context *, unsigned char * ); | ^~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/config.h:2855, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ssl_tls.c:31: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ssl_tls.c: In function ‘ssl_calc_verify_tls_sha384’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/ncbicxx_rename_mbedtls.h:1052:9: warning: ‘mbedtls_sha512_finish_ret_ncbicxx_2_7_6’ accessing 64 bytes in a region of size 48 [-Wstringop-overflow=] 1052 | mbedtls_sha512_finish_ret_ncbicxx_2_7_6 /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/ncbicxx_rename_mbedtls.h:1052:9: note: in definition of macro ‘mbedtls_sha512_finish_ret’ 1052 | mbedtls_sha512_finish_ret_ncbicxx_2_7_6 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/ncbicxx_rename_mbedtls.h:1052:9: note: referencing argument 2 of type ‘unsigned char *’ 1052 | mbedtls_sha512_finish_ret_ncbicxx_2_7_6 /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/ncbicxx_rename_mbedtls.h:1052:9: note: in definition of macro ‘mbedtls_sha512_finish_ret’ 1052 | mbedtls_sha512_finish_ret_ncbicxx_2_7_6 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/ncbicxx_rename_mbedtls.h:1052:9: note: in a call to function ‘mbedtls_sha512_finish_ret_ncbicxx_2_7_6’ 1052 | mbedtls_sha512_finish_ret_ncbicxx_2_7_6 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/ncbicxx_rename_mbedtls.h:1052:9: note: in definition of macro ‘mbedtls_sha512_finish_ret’ 1052 | mbedtls_sha512_finish_ret_ncbicxx_2_7_6 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ssl_tls.c: In function ‘ssl_calc_finished_tls_sha384’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/ncbicxx_rename_mbedtls.h:1052:9: warning: ‘mbedtls_sha512_finish_ret_ncbicxx_2_7_6’ accessing 64 bytes in a region of size 48 [-Wstringop-overflow=] 1052 | mbedtls_sha512_finish_ret_ncbicxx_2_7_6 /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/ncbicxx_rename_mbedtls.h:1052:9: note: in definition of macro ‘mbedtls_sha512_finish_ret’ 1052 | mbedtls_sha512_finish_ret_ncbicxx_2_7_6 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/ncbicxx_rename_mbedtls.h:1052:9: note: referencing argument 2 of type ‘unsigned char *’ 1052 | mbedtls_sha512_finish_ret_ncbicxx_2_7_6 /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/ncbicxx_rename_mbedtls.h:1052:9: note: in definition of macro ‘mbedtls_sha512_finish_ret’ 1052 | mbedtls_sha512_finish_ret_ncbicxx_2_7_6 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/ncbicxx_rename_mbedtls.h:1052:9: note: in a call to function ‘mbedtls_sha512_finish_ret_ncbicxx_2_7_6’ 1052 | mbedtls_sha512_finish_ret_ncbicxx_2_7_6 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/mbedtls/ncbicxx_rename_mbedtls.h:1052:9: note: in definition of macro ‘mbedtls_sha512_finish_ret’ 1052 | mbedtls_sha512_finish_ret_ncbicxx_2_7_6 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/net_sockets.c -o mbedtls/net_sockets.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ssl_cache.c -o mbedtls/ssl_cache.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ssl_ciphersuites.c -o mbedtls/ssl_ciphersuites.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ssl_cli.c -o mbedtls/ssl_cli.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ssl_cookie.c -o mbedtls/ssl_cookie.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ssl_srv.c -o mbedtls/ssl_srv.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ssl_ticket.c -o mbedtls/ssl_ticket.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/mbedtls/ssl_tls.c -o mbedtls/ssl_tls.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libconnssl.so .libconnssl.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libconnssl.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/md_wrap.o mbedtls/memory_buffer_alloc.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libconnssl.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libconnssl.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libconnssl.so ln -f .connssl.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.connssl.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect TMPL=connect -w all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_localip.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/parson.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_namerd.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_linkerd.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_lbos.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_dispd.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_local.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_iprange.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_version.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_ftp_connector.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_service_connector.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_memory_connector.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_http_connector.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_file_connector.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_socket_connector.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_lb.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_heapmgr.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_base64.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_sendmail.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_service.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_host_info.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_server_info.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_ipv6.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_connutil.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_connection.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_connector.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_socket.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_buffer.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_util.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_priv.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_core.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_types.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_ansi_ext.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_lbsmd_stub.c. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_lbsmd_stub.c -o ncbi_lbsmd_stub.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_types.c -o ncbi_types.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_core.c -o ncbi_core.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_priv.c -o ncbi_priv.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_util.c -o ncbi_util.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_socket.c -o ncbi_socket.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_connector.c -o ncbi_connector.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_connection.c -o ncbi_connection.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_ipv6.c -o ncbi_ipv6.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_service.c -o ncbi_service.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_heapmgr.c: In function ‘s_HEAP_Take’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_heapmgr.c:634:12: warning: taking address of packed member of ‘struct ’ may result in an unaligned pointer value [-Waddress-of-packed-member] 634 | return &b->head; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Walk’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_heapmgr.c:1227:12: warning: taking address of packed member of ‘struct ’ may result in an unaligned pointer value [-Waddress-of-packed-member] 1227 | return &s_HEAP_Walk(heap, ptr)->head; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_heapmgr.c: In function ‘HEAP_Next’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_heapmgr.c:1240:65: warning: taking address of packed member of ‘struct ’ may result in an unaligned pointer value [-Waddress-of-packed-member] 1240 | for (n = s_HEAP_Walk(heap, ptr); n; n = s_HEAP_Walk(heap, &n->head)) { | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_heapmgr.c:1244:12: warning: taking address of packed member of ‘struct ’ may result in an unaligned pointer value [-Waddress-of-packed-member] 1244 | return &n->head; | ^~~~~~~~ gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_base64.c -o ncbi_base64.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_lb.c -o ncbi_lb.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_ftp_connector.c -o ncbi_ftp_connector.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_version.c -o ncbi_version.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_iprange.c -o ncbi_iprange.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_local.c -o ncbi_local.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_lbos.c -o ncbi_lbos.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_linkerd.c -o ncbi_linkerd.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_namerd.c -o ncbi_namerd.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/parson.c -o parson.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_localip.c -o ncbi_localip.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libconnect.so .libconnect.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libconnect.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_dispd.o ncbi_lbos.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libconnect.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libconnect.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libconnect.so ln -f .connect.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.connect.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect TMPL=xxconnect -w all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_usage_report.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_blowfish.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_localip_cxx.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_service_cxx.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_monkey.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_lbos_cxx.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_http_session.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_userhost.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_conn_reader_writer.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_pipe_connector.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_pipe.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_namedpipe_connector.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_namedpipe.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_misc.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_conn_test.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_conn_stream.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_conn_streambuf.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/email_diag_handler.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_core_cxx.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_socket_cxx.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_pipe.cpp: In constructor ‘ncbi::CPipe::CPipe(const string&, const std::vector >&, ncbi::CPipe::TCreateFlags, const string&, const char* const*, size_t)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_pipe.cpp:1773:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1773 | auto_ptr pipe_handle_ptr(new CPipeHandle); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/error_codes.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_pipe.cpp:40: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guixIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_http_session.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbifile.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_http_session.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_lbos_cxx.cpp -o ncbi_lbos_cxx.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_service_cxx.cpp -o ncbi_service_cxx.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_localip_cxx.cpp -o ncbi_localip_cxx.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_usage_report.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_usage_report.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ c -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_blowfish.c -o ncbi_blowfish.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/ncbi_usage_report.cpp -o ncbi_usage_report.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxxconnect.so .libxxconnect.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxxconnect.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/md_wrap.o mbedtls/memory_buffer_alloc.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxxconnect.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxxconnect.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxxconnect.so ln -f .xxconnect.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xxconnect.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect TMPL=xconnect -w all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxconnect.so .libxconnect.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxconnect.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_dispd.o ncbi_lbos.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/md_wrap.o mbedtls/memory_buffer_alloc.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxconnect.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxconnect.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxconnect.so ln -f .xconnect.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xconnect.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect TMPL=xthrserv -w all /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/threaded_server.cpp:47:54: warning: ‘CThreadedServer’ is deprecated [-Wdeprecated-declarations] 47 | CSocketRequest(CThreadedServer& server, SOCK sock) // NCBI_FAKE_WARNING | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/threaded_server.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/threaded_server.hpp:77:44: note: declared here 77 | NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer | ^~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/threaded_server.cpp:52:22: warning: ‘CThreadedServer’ is deprecated [-Wdeprecated-declarations] 52 | CThreadedServer& m_Server; // NCBI_FAKE_WARNING | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/threaded_server.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/threaded_server.hpp:77:44: note: declared here 77 | NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer | ^~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/connection_pool.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/server.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/impl/server_connection.hpp:113:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 113 | auto_ptr m_Handler; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/server.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/connection_pool.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/server.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/impl/server_connection.hpp:145:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 145 | auto_ptr m_Factory; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/server.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/server.cpp: In constructor ‘ncbi::CAcceptRequest::CAcceptRequest(ncbi::EServIO_Event, ncbi::CServer_ConnectionPool&, const STimeout*, ncbi::CServer_Listener*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/server.cpp:389:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 389 | auto_ptr conn( | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/server.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/server_monitor.cpp: In member function ‘void ncbi::CServer_Monitor::SetSocket(ncbi::CSocket&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/server_monitor.cpp:56:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 56 | auto_ptr s(new CSocket()); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/server_monitor.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/server_monitor.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/connection_pool.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/connection_pool.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/impl/server_connection.hpp:113:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 113 | auto_ptr m_Handler; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/error_codes.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/connection_pool.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/connection_pool.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/connection_pool.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/impl/server_connection.hpp:145:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 145 | auto_ptr m_Factory; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/error_codes.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/connection_pool.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/connection_pool.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/server_monitor.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/server.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/threaded_server.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/threaded_server.cpp -o threaded_server.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/server.cpp -o server.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/server_monitor.cpp -o server_monitor.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/connection_pool.cpp -o connection_pool.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxthrserv.so .libxthrserv.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxthrserv.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC threaded_server.o server.o server_monitor.o connection_pool.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxutil -lxconnect -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxthrserv.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxthrserv.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxthrserv.so ln -f .xthrserv.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xthrserv.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C services -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/services' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/services' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/services/test/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services TMPL=xconnserv -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/services' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/services' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/services' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/services' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/services' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/services' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services TMPL=xconnserv -w all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/services' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api_wn_info.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/compound_id_v0.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/compound_id.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/ns_job_serializer.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/ns_output_parser.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netstorage_direct_nc.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netstorageobjectinfo.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netstorageobjectloc.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netstorage_rpc.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netstorage.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/json_over_uttp.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/clparser.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/util.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netservice_protocol_parser.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netcache_search.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netcache_api_admin.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netcache_api.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netcache_params.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netcache_rw.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netcache_key.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api_expt.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_key.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api_getjob.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api_admin.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api_reader.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api_executor.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api_submitter.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netservice_params.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netservice_api.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/srv_connections.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/remote_app.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/grid_rw_impl.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/grid_globals.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/grid_control_thread.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/wn_offline_mode.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/wn_cleanup.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/wn_main_loop.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/wn_commit_thread.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/grid_client_app.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/grid_client.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/grid_worker_app.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/ns_client_factory.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/grid_worker.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/grid_worker.cpp -o grid_worker.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/ns_client_factory.cpp -o ns_client_factory.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/grid_worker_app.cpp -o grid_worker_app.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/grid_client.cpp -o grid_client.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/grid_client_app.cpp -o grid_client_app.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/wn_commit_thread.cpp -o wn_commit_thread.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/wn_main_loop.cpp -o wn_main_loop.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/wn_cleanup.cpp -o wn_cleanup.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/wn_offline_mode.cpp -o wn_offline_mode.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/grid_control_thread.cpp -o grid_control_thread.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/grid_globals.cpp -o grid_globals.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.d/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api.cpp: In member function ‘bool ncbi::SNetScheduleNotificationReceiver::operator()(std::string*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api.cpp:270:20: warning: ‘buffer’ may be used uninitialized [-Wmaybe-uninitialized] 270 | if (socket.Recv(buffer.data(), buffer.size(), &msg_len, | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 | server_host, NULL) != eIO_Success) | ~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/tuple:39, from /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netservice_params.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/srv_connections_impl.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netservice_api_impl.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api_impl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/array:176:7: note: by argument 1 of type ‘const std::array*’ to ‘constexpr std::array<_Tp, _Nm>::size_type std::array<_Tp, _Nm>::size() const [with _Tp = char; long unsigned int _Nm = 65536]’ declared here 176 | size() const noexcept { return _Nm; } | ^~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api.cpp:267:28: note: ‘buffer’ declared here 267 | array buffer; // Enough to hold any UDP | ^~~~~~ rv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/grid_rw_impl.cpp -o grid_rw_impl.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/remote_app.cpp -o remote_app.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/srv_connections.cpp -o srv_connections.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netservice_api.cpp -o netservice_api.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netservice_params.cpp -o netservice_params.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api.cpp -o netschedule_api.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api_submitter.cpp -o netschedule_api_submitter.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api_executor.cpp -o netschedule_api_executor.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api_reader.cpp -o netschedule_api_reader.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api_admin.cpp -o netschedule_api_admin.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api_getjob.cpp -o netschedule_api_getjob.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_key.cpp -o netschedule_key.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api_expt.cpp -o netschedule_api_expt.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netcache_key.cpp -o netcache_key.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netcache_rw.cpp -o netcache_rw.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netcache_params.cpp -o netcache_params.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netcache_api.cpp -o netcache_api.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netcache_api_admin.cpp -o netcache_api_admin.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netcache_search.cpp -o netcache_search.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netservice_protocol_parser.cpp -o netservice_protocol_parser.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/util.cpp -o util.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/clparser.cpp -o clparser.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/json_over_uttp.cpp -o json_over_uttp.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netstorage.cpp -o netstorage.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netstorage_rpc.cpp -o netstorage_rpc.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netstorageobjectloc.cpp -o netstorageobjectloc.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netstorageobjectinfo.cpp -o netstorageobjectinfo.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netstorage_direct_nc.cpp -o netstorage_direct_nc.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/ns_output_parser.cpp -o ns_output_parser.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/ns_job_serializer.cpp -o ns_job_serializer.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/compound_id.cpp -o compound_id.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/compound_id_v0.cpp -o compound_id_v0.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/netschedule_api_wn_info.cpp -o netschedule_api_wn_info.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxconnserv.so .libxconnserv.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxconnserv.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxthrserv -lxconnect -lxutil -lxncbi -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxconnserv.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxconnserv.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxconnserv.so ln -f .xconnserv.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xconnserv.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/services' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services TMPL=ncbi_xcache_netcache -w all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/services' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/neticache_client.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/neticache_client.cpp -o neticache_client.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libncbi_xcache_netcache.a .libncbi_xcache_netcache.a.stamp ar cr libncbi_xcache_netcache.a neticache_client.o /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libncbi_xcache_netcache.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libncbi_xcache_netcache.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libncbi_xcache_netcache.a ln -f .ncbi_xcache_netcache-static.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.ncbi_xcache_netcache-static.dep /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libncbi_xcache_netcache.so .libncbi_xcache_netcache.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libncbi_xcache_netcache.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC neticache_client.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxconnserv -lxconnect -lxutil -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libncbi_xcache_netcache.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libncbi_xcache_netcache.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libncbi_xcache_netcache.so ln -f .ncbi_xcache_netcache.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.ncbi_xcache_netcache.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/services' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services TMPL=ncbi_xblobstorage_netcache -w all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/services' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/blob_storage_netcache.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/connect/services/blob_storage_netcache.cpp -o blob_storage_netcache.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libncbi_xblobstorage_netcache.so .libncbi_xblobstorage_netcache.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libncbi_xblobstorage_netcache.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC blob_storage_netcache.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxconnserv -lxconnect -lxutil -lxncbi -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libncbi_xblobstorage_netcache.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libncbi_xblobstorage_netcache.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libncbi_xblobstorage_netcache.so ln -f .ncbi_xblobstorage_netcache.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.ncbi_xblobstorage_netcache.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/services' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/services' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C test -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/services/test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/services/test' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/services' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C ext -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/ext' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/ext' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C test -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/test' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/test' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C daemons -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/daemons' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect/daemons' make[2]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/connect' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C cgi -w all_r || exit 5 make[2]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/cgi' make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/cgi' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/cgi/test/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi TMPL=cgi -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/cgi' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/cgi' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi TMPL=fcgi -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/cgi' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/cgi' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi TMPL=cgi -w all /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/ncbicgi.cpp: In member function ‘void ncbi::CCgiRequest::GetCGIEntries(ncbi::CEntryCollector_Base&) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/ncbicgi.cpp:1676:16: warning: catching polymorphic type ‘class ncbi::CStringException’ by value [-Wcatch-value=] 1676 | catch (CStringException) { | ^~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/ncbicgi.cpp: In member function ‘ncbi::CStringUTF8 ncbi::CCgiEntry::GetValueAsUTF8(ncbi::CCgiEntry::EOnCharsetError) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/ncbicgi.cpp:1933:12: warning: catching polymorphic type ‘class ncbi::CException’ by value [-Wcatch-value=] 1933 | catch (CException) { | ^~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/cgiapp.cpp: In member function ‘bool ncbi::CCgiApplication::x_ProcessVersionRequest()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/cgiapp.cpp:1904:12: warning: catching polymorphic type ‘class ncbi::CStringException’ by value [-Wcatch-value=] 1904 | catch (CStringException) { | ^~~~~~~~~~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/cgi' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/user_agent.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/cgi_entry_reader.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/cgiapp_cached.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/cgi_exception.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/cgi_session.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/cgi_serial.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/cgi_util.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/cgi_run.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/ref_args.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/ncbires.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/ncbicgir.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/cgictx.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/cgiapp.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/ncbicgi.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/cgiapp.cpp -o cgiapp.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/cgictx.cpp -o cgictx.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/ncbires.cpp -o ncbires.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/ref_args.cpp -o ref_args.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/cgi_run.cpp -o cgi_run.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/cgi_util.cpp -o cgi_util.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/cgi_session.cpp -o cgi_session.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/user_agent.cpp -o user_agent.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxcgi.so .libxcgi.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxcgi.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxcgi.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxcgi.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxcgi.so ln -f .xcgi.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xcgi.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/cgi' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi TMPL=fcgi -w all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/cgi' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/fcgi_run.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_XFCGI_EXPORTS /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/cgi/fcgi_run.cpp -o fcgi_run.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxfcgi.so .libxfcgi.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxfcgi.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_util.o cgi_serial.o fcgi_run.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxfcgi.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxfcgi.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxfcgi.so ln -f .xfcgi.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xfcgi.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/cgi' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/cgi' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C test -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/cgi/test' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/cgi/test' make[2]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/cgi' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C html -w all_r || exit 5 make[2]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/html' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/html/test/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/demo/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/demo/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/demo/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build demo/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/html/demo/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html TMPL=html -w export-headers make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/html' make[3]: Nothing to be done for 'export-headers'. make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/html' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html TMPL=html -w all make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/html' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/writer_htmlenc.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/html_exception.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/indentstream.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/commentdiag.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/components.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/selection.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/pager.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/page.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/htmlhelper.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/html.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/node.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/node.cpp -o node.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/html.cpp -o html.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/htmlhelper.cpp -o htmlhelper.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/page.cpp -o page.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/pager.cpp -o pager.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/selection.cpp -o selection.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/components.cpp -o components.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/commentdiag.cpp -o commentdiag.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/indentstream.cpp -o indentstream.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/html_exception.cpp -o html_exception.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxhtml.so .libxhtml.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxhtml.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxhtml.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxhtml.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxhtml.so ln -f .xhtml.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xhtml.dep make[3]: Leavi/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/run_with_lock: Unable to rename log file make_html.log.new: No such file or directory. ng directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/html' ng directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/html' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C test -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/html/test' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/html/test' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C demo -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/html/demo' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/html/demo' make[2]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/html' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C build-system -w all_r || exit 5 make[2]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/build-system' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C helpers -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/build-system/helpers' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make[3] (Makefile.run_with_lock.app): Nothing to be done for `all'. make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/build-system/helpers' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C project_tree_builder -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/build-system/project_tree_builder' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/msbuild/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/msbuild/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/msbuild/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build msbuild/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/build-system/project_tree_builder/msbuild/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder TMPL=project_tree_builder -w all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/build-system/project_tree_builder' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/ptb_gui.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/configurable_file.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_files_collector.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/msvc_dlls_info.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/proj_projects.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/msvc_configure_prj_generator.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/resolver.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/proj_utils.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/proj_src_resolver.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/proj_tree_builder.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/proj_tree.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/proj_item.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/proj_datatool_generated_src.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/proj_builder_app.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/msvc_sln_generator.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/msvc_site.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/msvc_project_context.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_utils.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/msvc_prj_generator.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/msvc_masterproject_generator.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/file_contents.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/file_contents.cpp -o file_contents.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/msvc_configure.cpp -o msvc_configure.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/msvc_makefile.cpp -o msvc_makefile.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/ptb_registry.cpp -o ptb_registry.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/fxspvmsmypn6g74mx3dc58qmh16n90vj-pcre-8.45/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxutil -lxncbi -lxregexp -L/gnu/store/fxspvmsmypn6g74mx3dc58qmh16n90vj-pcre-8.45/lib -lpcre -lm -lpthread -o project_tree_builder /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f project_tree_builder /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f project_tree_builder /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/project_tree_builder make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/build-system/project_tree_builder' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C msbuild -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/build-system/project_tree_builder/msbuild' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/build-system/project_tree_builder/msbuild' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/build-system/project_tree_builder' make[2]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/build-system' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C serial -w all_r || exit 5 make[2]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial' make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial/test/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/soap/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/soap/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/soap/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build soap/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial/soap/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial TMPL=serial -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial TMPL=cserial -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial TMPL=serial -w all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/rpcbase.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/pathhook.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/serialobject.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/serializable.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objistrjson.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objostrjson.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objistrxml.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objostrxml.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objistrasnb.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objostrasnb.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objistrasn.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objostrasn.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objstack.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objlist.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objhook.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/exception.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/pack_string.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/delaybuf.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/serial.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/iterator.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objcopy.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objostr.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objistr.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/aliasinfo.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/choiceptr.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/choice.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/variant.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/classinfo.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/member.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/classinfob.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/item.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/memberlistIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/typeinfo.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/typeinfo.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ .cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/memberid.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stltypes.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/continfo.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/autoptrinfo.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/ptrinfo.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/enumerated.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/typemap.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/typeref.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objectio.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objectiter.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objectinfo.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/typeinfo.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/hookdatakey.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/hookdata.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/hookdata.cpp -o hookdata.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/hookdatakey.cpp -o hookdatakey.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/typeinfo.cpp -o typeinfo.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objectinfo.cpp -o objectinfo.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/typeref.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialdef.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/typeref.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/typeref.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp: In static member function ‘static void ncbi::CPrimitiveTypeFunctions::Skip(ncbi::CObjectIStream&, ncbi::TTypeInfo) [with T = long double]’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:147:23: warning: ‘data’ may be used uninitialized [-Wmaybe-uninitialized] 147 | in.SkipStd(data); | ~~~~~~~~~~^~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:147:23: note: by argument 2 of type ‘const long double&’ to ‘void (ncbi::CObjectIStream::)(const long double&)’ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:146:25: note: ‘data’ declared here 146 | TObjectType data; | ^~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp: In static member function ‘static void ncbi::CPrimitiveTypeFunctions::Skip(ncbi::CObjectIStream&, ncbi::TTypeInfo) [with T = bool]’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:147:23: warning: ‘data’ may be used uninitialized [-Wmaybe-uninitialized] 147 | in.SkipStd(data); | ~~~~~~~~~~^~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objistr.hpp:1207, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objcopy.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stdtypesimpl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/objistr.inl:188:6: note: by argument 2 of type ‘const bool&’ to ‘void ncbi::CObjectIStream::SkipStd(const bool&)’ declared here 188 | void CObjectIStream::SkipStd(const bool &) | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:146:25: note: ‘data’ declared here 146 | TObjectType data; | ^~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp: In static member function ‘static void ncbi::CPrimitiveTypeFunctions::Skip(ncbi::CObjectIStream&, ncbi::TTypeInfo) [with T = char]’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:147:23: warning: ‘data’ may be used uninitialized [-Wmaybe-uninitialized] 147 | in.SkipStd(data); | ~~~~~~~~~~^~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objistr.hpp:1207, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objcopy.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stdtypesimpl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/objistr.inl:201:6: note: by argument 2 of type ‘const char&’ to ‘void ncbi::CObjectIStream::SkipStd(const char&)’ declared here 201 | void CObjectIStream::SkipStd(const char& ) | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:146:25: note: ‘data’ declared here 146 | TObjectType data; | ^~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp: In static member function ‘static void ncbi::CPrimitiveTypeFunctions::Skip(ncbi::CObjectIStream&, ncbi::TTypeInfo) [with T = signed char]’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:147:23: warning: ‘data’ may be used uninitialized [-Wmaybe-uninitialized] 147 | in.SkipStd(data); | ~~~~~~~~~~^~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objistr.hpp:1207, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objcopy.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stdtypesimpl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/objistr.inl:221:6: note: by argument 2 of type ‘const signed char&’ to ‘void ncbi::CObjectIStream::SkipStd(const signed char&)’ declared here 221 | void CObjectIStream::SkipStd(const signed char& ) | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:146:25: note: ‘data’ declared here 146 | TObjectType data; | ^~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp: In static member function ‘static void ncbi::CPrimitiveTypeFunctions::Skip(ncbi::CObjectIStream&, ncbi::TTypeInfo) [with T = unsigned char]’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:147:23: warning: ‘data’ may be used uninitialized [-Wmaybe-uninitialized] 147 | in.SkipStd(data); | ~~~~~~~~~~^~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objistr.hpp:1207, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objcopy.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stdtypesimpl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/objistr.inl:227:6: note: by argument 2 of type ‘const unsigned char&’ to ‘void ncbi::CObjectIStream::SkipStd(const unsigned char&)’ declared here 227 | void CObjectIStream::SkipStd(const unsigned char& ) | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:146:25: note: ‘data’ declared here 146 | TObjectType data; | ^~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp: In static member function ‘static void ncbi::CPrimitiveTypeFunctions::Skip(ncbi::CObjectIStream&, ncbi::TTypeInfo) [with T = short int]’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:147:23: warning: ‘data’ may be used uninitialized [-Wmaybe-uninitialized] 147 | in.SkipStd(data); | ~~~~~~~~~~^~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objistr.hpp:1207, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objcopy.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stdtypesimpl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/objistr.inl:249:6: note: by argument 2 of type ‘const short int&’ to ‘void ncbi::CObjectIStream::SkipStd(const short int&)’ declared here 249 | void CObjectIStream::SkipStd(const short& ) | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:146:25: note: ‘data’ declared here 146 | TObjectType data; | ^~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp: In static member function ‘static void ncbi::CPrimitiveTypeFunctions::Skip(ncbi::CObjectIStream&, ncbi::TTypeInfo) [with T = short unsigned int]’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:147:23: warning: ‘data’ may be used uninitialized [-Wmaybe-uninitialized] 147 | in.SkipStd(data); | ~~~~~~~~~~^~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objistr.hpp:1207, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objcopy.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stdtypesimpl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/objistr.inl:255:6: note: by argument 2 of type ‘const short unsigned int&’ to ‘void ncbi::CObjectIStream::SkipStd(const short unsigned int&)’ declared here 255 | void CObjectIStream::SkipStd(const unsigned short& ) | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:146:25: note: ‘data’ declared here 146 | TObjectType data; | ^~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp: In static member function ‘static void ncbi::CPrimitiveTypeFunctions::Skip(ncbi::CObjectIStream&, ncbi::TTypeInfo) [with T = int]’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:147:23: warning: ‘data’ may be used uninitialized [-Wmaybe-uninitialized] 147 | in.SkipStd(data); | ~~~~~~~~~~^~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objistr.hpp:1207, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objcopy.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stdtypesimpl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/objistr.inl:277:6: note: by argument 2 of type ‘const int&’ to ‘void ncbi::CObjectIStream::SkipStd(const int&)’ declared here 277 | void CObjectIStream::SkipStd(const int& ) | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:146:25: note: ‘data’ declared here 146 | TObjectType data; | ^~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp: In static member function ‘static void ncbi::CPrimitiveTypeFunctions::Skip(ncbi::CObjectIStream&, ncbi::TTypeInfo) [with T = unsigned int]’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:147:23: warning: ‘data’ may be used uninitialized [-Wmaybe-uninitialized] 147 | in.SkipStd(data); | ~~~~~~~~~~^~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objistr.hpp:1207, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objcopy.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stdtypesimpl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/objistr.inl:283:6: note: by argument 2 of type ‘const unsigned int&’ to ‘void ncbi::CObjectIStream::SkipStd(const unsigned int&)’ declared here 283 | void CObjectIStream::SkipStd(const unsigned& ) | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:146:25: note: ‘data’ declared here 146 | TObjectType data; | ^~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp: In static member function ‘static void ncbi::CPrimitiveTypeFunctions::Skip(ncbi::CObjectIStream&, ncbi::TTypeInfo) [with T = long int]’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:147:23: warning: ‘data’ may be used uninitialized [-Wmaybe-uninitialized] 147 | in.SkipStd(data); | ~~~~~~~~~~^~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objistr.hpp:1207, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objcopy.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stdtypesimpl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/objistr.inl:354:6: note: by argument 2 of type ‘const Int8&’ {aka ‘const long int&’} to ‘void ncbi::CObjectIStream::SkipStd(const Int8&)’ declared here 354 | void CObjectIStream::SkipStd(const Int8& ) | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:146:25: note: ‘data’ declared here 146 | TObjectType data; | ^~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp: In static member function ‘static void ncbi::CPrimitiveTypeFunctions::Skip(ncbi::CObjectIStream&, ncbi::TTypeInfo) [with T = long unsigned int]’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:147:23: warning: ‘data’ may be used uninitialized [-Wmaybe-uninitialized] 147 | in.SkipStd(data); | ~~~~~~~~~~^~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objistr.hpp:1207, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objcopy.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stdtypesimpl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/objistr.inl:360:6: note: by argument 2 of type ‘const Uint8&’ {aka ‘const long unsigned int&’} to ‘void ncbi::CObjectIStream::SkipStd(const Uint8&)’ declared here 360 | void CObjectIStream::SkipStd(const Uint8& ) | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:146:25: note: ‘data’ declared here 146 | TObjectType data; | ^~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp: In static member function ‘static void ncbi::CPrimitiveTypeFunctions::Skip(ncbi::CObjectIStream&, ncbi::TTypeInfo) [with T = float]’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:147:23: warning: ‘data’ may be used uninitialized [-Wmaybe-uninitialized] 147 | in.SkipStd(data); | ~~~~~~~~~~^~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objistr.hpp:1207, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objcopy.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stdtypesimpl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/objistr.inl:379:6: note: by argument 2 of type ‘const float&’ to ‘void ncbi::CObjectIStream::SkipStd(const float&)’ declared here 379 | void CObjectIStream::SkipStd(const float& ) | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:146:25: note: ‘data’ declared here 146 | TObjectType data; | ^~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp: In static member function ‘static void ncbi::CPrimitiveTypeFunctions::Skip(ncbi::CObjectIStream&, ncbi::TTypeInfo) [with T = double]’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:147:23: warning: ‘data’ may be used uninitialized [-Wmaybe-uninitialized] 147 | in.SkipStd(data); | ~~~~~~~~~~^~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objistr.hpp:1207, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objcopy.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stdtypesimpl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/objistr.inl:385:6: note: by argument 2 of type ‘const double&’ to ‘void ncbi::CObjectIStream::SkipStd(const double&)’ declared here 385 | void CObjectIStream::SkipStd(const double& ) | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:146:25: note: ‘data’ declared here 146 | TObjectType data; | ^~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp: In static member function ‘static void ncbi::CPrimitiveTypeFunctions::Skip(ncbi::CObjectIStream&, ncbi::TTypeInfo) [with T = char*]’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:147:23: warning: ‘data’ may be used uninitialized [-Wmaybe-uninitialized] 147 | in.SkipStd(data); | ~~~~~~~~~~^~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objistr.hpp:1207, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objcopy.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stdtypesimpl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/objistr.inl:431:6: note: by argument 2 of type ‘char* const&’ to ‘void ncbi::CObjectIStream::SkipStd(char* const&)’ declared here 431 | void CObjectIStream::SkipStd(char* const& ) | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:146:25: note: ‘data’ declared here 146 | TObjectType data; | ^~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp: In static member function ‘static void ncbi::CPrimitiveTypeFunctions::Skip(ncbi::CObjectIStream&, ncbi::TTypeInfo) [with T = const char*]’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:147:23: warning: ‘data’ may be used uninitialized [-Wmaybe-uninitialized] 147 | in.SkipStd(data); | ~~~~~~~~~~^~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objistr.hpp:1207, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objcopy.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stdtypesimpl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/objistr.inl:437:6: note: by argument 2 of type ‘const char* const&’ to ‘void ncbi::CObjectIStream::SkipStd(const char* const&)’ declared here 437 | void CObjectIStream::SkipStd(const char* const& ) | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp:146:25: note: ‘data’ declared here 146 | TObjectType data; | ^~~~ FE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objectiter.cpp -o objectiter.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objectio.cpp -o objectio.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/typeref.cpp -o typeref.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/typemap.cpp -o typemap.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stdtypes.cpp -o stdtypes.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/enumerated.cpp -o enumerated.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/ptrinfo.cpp -o ptrinfo.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/iIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stltypes.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypesimpl.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stltypes.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/classinfob.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/classinfob.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/member.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/member.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/variant.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/variant.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ nclude /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/continfo.cpp -o continfo.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/stltypes.cpp -o stltypes.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/memberid.cpp -o memberid.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/memberlist.cpp -o memberlist.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/item.cpp -o item.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/classinfob.cpp -o classinfob.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/member.cpp -o member.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/classinfo.cpp -o classinfo.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/variant.cpp -o variant.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objistr.cpp:62: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objistr.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objostr.cpp:62: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objostr.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objcopy.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objcopy.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/serial.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/serial.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ c-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/choice.cpp -o choice.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/choiceptr.cpp -o choiceptr.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/aliasinfo.cpp -o aliasinfo.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objistr.cpp -o objistr.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objostr.cpp -o objostr.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objcopy.cpp -o objcopy.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/iterator.cpp -o iterator.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/serial.cpp -o serial.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/delaybuf.cpp -o delaybuf.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/pack_string.cpp -o pack_string.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/exception.cpp -o exception.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objhook.cpp -o objhook.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objlist.cpp -o objlist.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objstack.cpp -o objstack.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objostrasn.cpp -o objostrasn.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objistrasn.cpp -o objistrasn.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objostrasnb.cpp -o objostrasnb.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objistrasnb.cpp -o objistrasnb.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objostrxml.cpp -o objostrxml.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objistrxml.cpp -o objistrxml.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objostrjson.cpp -o objostrjson.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/objistrjson.cpp -o objistrjson.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/serializable.cpp -o serializable.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/serialobject.cpp -o serialobject.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/pathhook.cpp -o pathhook.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/rpcbase.cpp -o rpcbase.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxser.so .libxser.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxser.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxutil -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxser.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxser.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxser.so ln -f .xser.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xser.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial TMPL=cserial -w all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/serialasn.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/asntypes.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/asntypes.cpp -o asntypes.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/serialasn.cpp -o serialasn.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxcser.so .libxcser.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxcser.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC asntypes.o serialasn.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxcser.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxcser.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxcser.so ln -f .xcser.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xcser.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C datatool -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial/datatool' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool TMPL=datatool -w all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial/datatool' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/traversal_node.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/traversal_merger.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/traversal_code_generator.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/jsdparser.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/jsdlexer.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/wsdlstr.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/wsdlparser.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/wsdllexer.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/xsdparser.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/xsdlexer.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/aliasstr.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/rpcgen.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/dtdparser.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/dtdlexer.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/dtdaux.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/srcutil.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/comments.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/exceptions.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/lexer.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/parser.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/aparser.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/alexer.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/fileutil.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/code.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/filecode.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/generate.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/moduleset.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/module.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/mcontainer.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/value.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/choiceptrstr.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/choicestr.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/stlstr.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/enumstr.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/classstr.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/stdstr.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/ptrstr.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/typestr.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/choicetype.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/blocktype.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/unitype.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/reftype.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/enumtype.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/statictype.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/namespace.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/type.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/datatool.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/datatool.cpp -o datatool.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/type.cpp -o type.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool /tmp/guix-build-blast+-In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/statictype.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/exceptions.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/statictype.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/reftype.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/type.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/reftype.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/reftype.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/unitype.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/unitype.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ 2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/namespace.cpp -o namespace.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/statictype.cpp -o statictype.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/enumtype.cpp -o enumtype.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/reftype.cpp -o reftype.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/unitype.cpp -o unitype.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/blocktype.cpp -o blocktype.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/choicetype.cpp -o choicetype.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/typestr.cpp -o typestr.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/ptrstr.cpp -o ptrstr.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/stdstr.cpp -o stdstr.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/classstr.cpp -o classstr.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/enumstr.cpp -o enumstr.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/stlstr.cpp -o stlstr.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/choicestr.cpp -o choicestr.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE 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/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/xsdparser.cpp -o xsdparser.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/wsdllexer.cpp -o wsdllexer.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/wsdlparser.cpp -o wsdlparser.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/wsdlstr.cpp -o wsdlstr.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/jsdlexer.cpp -o jsdlexer.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/jsdparser.cpp -o jsdparser.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=datatool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o jsdlexer.o jsdparser.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxser -lxutil -lxncbi -lm -lpthread -o datatool /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f datatool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f datatool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial/datatool' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial/datatool' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C test -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial/test' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial/test' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C soap -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial/soap' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial/soap' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C grpc_integration -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial/grpc_integration' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial/grpc_integration' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial/grpc_integration' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/grpc_integration TMPL=grpc_integration -w all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial/grpc_integration' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/grpc_integration/grpc_integration.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/serial/grpc_integration/grpc_integration.cpp -o grpc_integration.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libgrpc_integration.so .libgrpc_integration.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libgrpc_integration.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC grpc_integration.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxconnect -lxutil -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libgrpc_integration.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libgrpc_integration.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libgrpc_integration.so ln -f .grpc_integration.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.grpc_integration.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial/grpc_integration' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial/grpc_integration' make[2]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/serial' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C db -w all_r || exit 5 make[2]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/db' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/db/bdb/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/db/bdb/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/db/bdb/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build bdb/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/db/bdb/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C sqlite -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/db/sqlite' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/db/sqlite' make[4]: *** No rule to make target '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/SQLITE3.enabled', needed by 'requirements'. Stop. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/db/sqlite' NOTE: skipping project "sqlitewrapp" due to unmet requirements make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/db/sqlite' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/db/sqlite' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/db/sqlite' make[4]: *** No rule to make target '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/SQLITE3.enabled', needed by 'requirements'. Stop. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/db/sqlite' NOTE: skipping project "sqlitewrapp" due to unmet requirements make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/db/sqlite' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/db/sqlite' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/db/sqlite' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C bdb -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/db/bdb' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/db/bdb' make[2]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/db' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C dbapi -w all_r || exit 5 make[2]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/simple/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/simple/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/simple/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build simple/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/simple/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/lang_bind/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/lang_bind/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/lang_bind/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build lang_bind/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/lang_bind/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/test/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi TMPL=dbapi -w export-headers make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi' make[3]: Nothing to be done for 'export-headers'. make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi TMPL=dbapi -w all /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/dbapi.cpp: In member function ‘virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/dbapi.cpp:116:26: warning: ‘virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(size_t, ncbi::TBlobOStreamFlags, size_t)’ is deprecated [-Wdeprecated-declarations] 116 | return GetBlobOStream(blob_size, | ~~~~~~~~~~~~~~^~~~~~~~~~~ 117 | (log_it == eDisableLog) ? fBOS_SkipLogging : 0, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 | buf_size); | ~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/dbapi.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/dbapi.hpp:269:27: note: declared here 269 | virtual CNcbiOstream& GetBlobOStream(size_t blob_size, | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/dbapi.cpp: In member function ‘virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/dbapi.cpp:124:26: warning: ‘virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::TBlobOStreamFlags, size_t)’ is deprecated [-Wdeprecated-declarations] 124 | return GetBlobOStream(conn, blob_size, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 125 | (log_it == eDisableLog) ? fBOS_SkipLogging : 0, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 | buf_size); | ~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/dbapi.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/dbapi.hpp:294:27: note: declared here 294 | virtual CNcbiOstream& GetBlobOStream(IConnection *conn, | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/dbapi.cpp: In member function ‘virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/dbapi.cpp:154:26: warning: ‘virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::TBlobOStreamFlags, size_t)’ is deprecated [-Wdeprecated-declarations] 154 | return GetBlobOStream(col, blob_size, | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 155 | (log_it == eDisableLog) ? fBOS_SkipLogging : 0, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 | buf_size); | ~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/dbapi.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/dbapi.hpp:596:27: note: declared here 596 | virtual CNcbiOstream& GetBlobOStream(unsigned int col, | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/dbapi.cpp: In member function ‘virtual ncbi::IWriter* ncbi::ICursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/dbapi.cpp:162:25: warning: ‘virtual ncbi::IWriter* ncbi::ICursor::GetBlobWriter(unsigned int, size_t, ncbi::TBlobOStreamFlags)’ is deprecated [-Wdeprecated-declarations] 162 | return GetBlobWriter(col, blob_size, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ 163 | (log_it == eDisableLog) ? fBOS_SkipLogging : 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/dbapi.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/dbapi.hpp:621:22: note: declared here 621 | virtual IWriter* GetBlobWriter(unsigned int col, | ^~~~~~~~~~~~~ make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rw_impl.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/bulkinsert.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cursor_impl.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/blobstream.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/bytestreambuf.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cstmt_impl.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rsmeta_impl.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rs_impl.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/stmt_impl.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/conn_impl.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/ds_impl.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/err_handler.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver_mgr.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/dbapi.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/active_obj.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/variant.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/variant.cpp -o variant.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/active_obj.cpp -o active_obj.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/dbapi.cpp -o dbapi.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver_mgr.cpp -o driver_mgr.o /gnu/store/5lqhcv91ijy82p92ac6/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rs_impl.cpp: In member function ‘void ncbi::CResultSet::x_CacheItems(int)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rs_impl.cpp:261:58: warning: ‘virtual ncbi::I_BlobDescriptor* ncbi::CDB_Result::GetBlobDescriptor()’ is deprecated [-Wdeprecated-declarations] 261 | var.SetBlobDescriptor(m_rs->GetBlobDescriptor()); | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/driver_mgr.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver_mgr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/dbapi.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/stmt_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rs_impl.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/public.hpp:541:31: note: declared here 541 | virtual I_BlobDescriptor* GetBlobDescriptor(); | ^~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rs_impl.cpp: In member function ‘virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rs_impl.cpp:329:38: warning: ‘virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)’ is deprecated [-Wdeprecated-declarations] 329 | return IResultSet::GetBlobOStream(blob_size, log_it, buf_size); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/stmt_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rs_impl.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/dbapi.hpp:274:27: note: declared here 274 | virtual CNcbiOstream& GetBlobOStream(size_t blob_size, | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rs_impl.cpp: At global scope: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rs_impl.cpp:330:1: warning: ‘virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(size_t, ncbi::EAllowLog, size_t)’ is deprecated [-Wdeprecated-declarations] 330 | } | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rs_impl.cpp:325:15: note: declared here 325 | CNcbiOstream& CResultSet::GetBlobOStream(size_t blob_size, | ^~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rs_impl.cpp: In member function ‘virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rs_impl.cpp:337:38: warning: ‘virtual ncbi::CNcbiOstream& ncbi::IResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)’ is deprecated [-Wdeprecated-declarations] 337 | return IResultSet::GetBlobOStream(conn, blob_size, log_it, buf_size); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/stmt_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rs_impl.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/dbapi.hpp:300:27: note: declared here 300 | virtual CNcbiOstream& GetBlobOStream(IConnection *conn, | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rs_impl.cpp: At global scope: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rs_impl.cpp:338:1: warning: ‘virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::EAllowLog, size_t)’ is deprecated [-Wdeprecated-declarations] 338 | } | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rs_impl.cpp:332:15: note: declared here 332 | CNcbiOstream& CResultSet::GetBlobOStream(IConnection *conn, | ^~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rs_impl.cpp:355:1: warning: ‘virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(size_t, ncbi::TBlobOStreamFlags, size_t)’ is deprecated [-Wdeprecated-declarations] 355 | } | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rs_impl.cpp:348:15: note: declared here 348 | CNcbiOstream& CResultSet::GetBlobOStream(size_t blob_size, | ^~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rs_impl.cpp:365:1: warning: ‘virtual ncbi::CNcbiOstream& ncbi::CResultSet::GetBlobOStream(ncbi::IConnection*, size_t, ncbi::TBlobOStreamFlags, size_t)’ is deprecated [-Wdeprecated-declarations] 365 | } | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rs_impl.cpp:357:15: note: declared here 357 | CNcbiOstream& CResultSet::GetBlobOStream(IConnection *conn, | ^~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rs_impl.cpp: In member function ‘ncbi::CNcbiOstream& ncbi::CResultSet::xGetBlobOStream(ncbi::CDB_Connection*, size_t, ncbi::TBlobOStreamFlags, size_t, bool)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rs_impl.cpp:384:62: warning: ‘virtual ncbi::I_BlobDescriptor* ncbi::CDB_Result::GetBlobDescriptor()’ is deprecated [-Wdeprecated-declarations] 384 | unique_ptr desc(m_rs->GetBlobDescriptor()); | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/driver_mgr.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver_mgr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/dbapi.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/stmt_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rs_impl.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/public.hpp:541:31: note: declared here 541 | virtual I_BlobDescriptor* GetBlobDescriptor(); | ^~~~~~~~~~~~~~~~~ g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/err_handler.cpp -o err_handler.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/ds_impl.cpp -o ds_impl.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/conn_impl.cpp -o conn_impl.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/stmt_impl.cpp -o stmt_impl.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rs_impl.cpp -o rs_impl.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rsmeta_impl.cpp -o rsmeta_impl.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cstmt_impl.cpp -o cstmt_impl.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/bytestreambuf.cpp -o bytestreambuf.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/blobstream.cpp: In constructor ‘ncbi::CBlobOStream::CBlobOStream(ncbi::CDB_CursorCmd*, unsigned int, size_t, std::streamsize, ncbi::TBlobOStreamFlags, ncbi::CDB_Connection*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/blobstream.cpp:85:37: warning: ‘virtual ncbi::CDB_SendDataCmd* ncbi::CDB_CursorCmd::SendDataCmd(unsigned int, size_t, bool, bool)’ is deprecated [-Wdeprecated-declarations] 85 | ->SetCmd(curCmd->SendDataCmd(item_num, datasize, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 86 | (flags & fBOS_SkipLogging) == 0)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/driver_mgr.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver_mgr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/dbapi.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/bytestreambuf.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/blobstream.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/blobstream.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/public.hpp:890:30: note: declared here 890 | virtual CDB_SendDataCmd* SendDataCmd(unsigned int item_num, size_t size, | ^~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cursor_impl.cpp:122:1: warning: ‘virtual ncbi::CNcbiOstream& ncbi::CCursor::GetBlobOStream(unsigned int, size_t, ncbi::TBlobOStreamFlags, size_t)’ is deprecated [-Wdeprecated-declarations] 122 | } | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cursor_impl.cpp:106:15: note: declared here 106 | CNcbiOstream& CCursor::GetBlobOStream(unsigned int col, | ^~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cursor_impl.cpp: In member function ‘virtual ncbi::CNcbiOstream& ncbi::CCursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cursor_impl.cpp:129:35: warning: ‘virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)’ is deprecated [-Wdeprecated-declarations] 129 | return ICursor::GetBlobOStream(col, blob_size, log_it, buf_size); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/conn_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cursor_impl.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/dbapi.hpp:602:27: note: declared here 602 | virtual CNcbiOstream& GetBlobOStream(unsigned int col, | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cursor_impl.cpp: At global scope: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cursor_impl.cpp:130:1: warning: ‘virtual ncbi::CNcbiOstream& ncbi::CCursor::GetBlobOStream(unsigned int, size_t, ncbi::EAllowLog, size_t)’ is deprecated [-Wdeprecated-declarations] 130 | } | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cursor_impl.cpp:124:15: note: declared here 124 | CNcbiOstream& CCursor::GetBlobOStream(unsigned int col, | ^~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cursor_impl.cpp:145:1: warning: ‘virtual ncbi::IWriter* ncbi::CCursor::GetBlobWriter(unsigned int, size_t, ncbi::TBlobOStreamFlags)’ is deprecated [-Wdeprecated-declarations] 145 | } | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cursor_impl.cpp:132:10: note: declared here 132 | IWriter* CCursor::GetBlobWriter(unsigned int col, | ^~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cursor_impl.cpp: In member function ‘virtual ncbi::IWriter* ncbi::CCursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cursor_impl.cpp:151:34: warning: ‘virtual ncbi::IWriter* ncbi::ICursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)’ is deprecated [-Wdeprecated-declarations] 151 | return ICursor::GetBlobWriter(col, blob_size, log_it); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/conn_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cursor_impl.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/dbapi.hpp:626:22: note: declared here 626 | virtual IWriter* GetBlobWriter(unsigned int col, | ^~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cursor_impl.cpp: At global scope: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cursor_impl.cpp:152:1: warning: ‘virtual ncbi::IWriter* ncbi::CCursor::GetBlobWriter(unsigned int, size_t, ncbi::EAllowLog)’ is deprecated [-Wdeprecated-declarations] 152 | } | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cursor_impl.cpp:147:10: note: declared here 147 | IWriter* CCursor::GetBlobWriter(unsigned int col, | ^~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rw_impl.cpp: In constructor ‘ncbi::CxBlobWriter::CxBlobWriter(ncbi::CDB_CursorCmd*, unsigned int, size_t, ncbi::TBlobOStreamFlags)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rw_impl.cpp:88:36: warning: ‘virtual ncbi::CDB_SendDataCmd* ncbi::CDB_CursorCmd::SendDataCmd(unsigned int, size_t, bool, bool)’ is deprecated [-Wdeprecated-declarations] 88 | m_dataCmd = curCmd->SendDataCmd(item_num, datasize, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 89 | (flags & fBOS_SkipLogging) == 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/driver_mgr.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver_mgr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/dbapi.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rw_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rw_impl.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/public.hpp:890:30: note: declared here 890 | virtual CDB_SendDataCmd* SendDataCmd(unsigned int item_num, size_t size, | ^~~~~~~~~~~ FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/blobstream.cpp -o blobstream.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cursor_impl.cpp -o cursor_impl.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/bulkinsert.cpp -o bulkinsert.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/rw_impl.cpp -o rw_impl.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libdbapi.so .libdbapi.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libdbapi.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC variant.o active_obj.o dbapi.o driver_mgr.o err_handler.o ds_impl.o conn_impl.o stmt_impl.o rs_impl.o rsmeta_impl.o cstmt_impl.o bytestreambuf.o blobstream.o cursor_impl.o bulkinsert.o rw_impl.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libdbapi.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libdbapi.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libdbapi.so ln -f .dbapi.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.dbapi.dep make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C driver -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/util/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/util/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/util/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build util/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver/util/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/ctlib/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build ctlib/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver/ctlib/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/ftds95/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/ftds95/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/ftds95/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build ftds95/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver/ftds95/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/ftds100/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/ftds100/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/ftds100/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build ftds100/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver/ftds100/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/ftds-default/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build ftds-default/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver/ftds-default/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/mysql/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/mysql/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/mysql/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build mysql/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver/mysql/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/samples/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/samples/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/samples/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build samples/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver/samples/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver TMPL=dbapi_driver -w all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/driver_mgr.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/pointer_pot.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/memory_store.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/types.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/public.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/interfaces.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/exception.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/parameters.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/numeric_convert.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/handle_stack.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/handle_stack.cpp -o handle_stack.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++//tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/interfaces.cpp: In member function ‘bool ncbi::I_CursorCmd::UpdateTextImage(unsigned int, ncbi::CDB_Stream&, bool)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/interfaces.cpp:248:22: warning: ‘virtual bool ncbi::I_CursorCmd::UpdateBlob(unsigned int, ncbi::CDB_Stream&, bool)’ is deprecated [-Wdeprecated-declarations] 248 | return UpdateBlob(item_num, data, log_it); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_conn_mgr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_conn_params.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/interfaces.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/interfaces.hpp:561:18: note: declared here 561 | virtual bool UpdateBlob(unsigned int item_num, CDB_Stream& data, | ^~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/interfaces.cpp: In member function ‘ncbi::I_BlobDescriptor* ncbi::I_Result::GetImageOrTextDescriptor()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/interfaces.cpp:276:29: warning: ‘virtual ncbi::I_BlobDescriptor* ncbi::I_Result::GetBlobDescriptor()’ is deprecated [-Wdeprecated-declarations] 276 | return GetBlobDescriptor(); | ~~~~~~~~~~~~~~~~~^~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_conn_mgr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_conn_params.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/interfaces.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/interfaces.hpp:769:31: note: declared here 769 | virtual I_BlobDescriptor* GetBlobDescriptor(void) = 0; | ^~~~~~~~~~~~~~~~~ build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/numeric_convert.cpp -o numeric_convert.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/parameters.cpp -o parameters.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/exception.cpp -o exception.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/interfaces.cpp -o interfaces.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/public.cpp -o public.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/types.cpp -o types.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/memory_store.cpp -o memory_store.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/pointer_pot.cpp -o pointer_pot.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/driver_mgr.cpp -o driver_mgr.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_mgr.cpp -o dbapi_driver_conn_mgr.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_conn_factory.cpp -o dbapi_conn_factory.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_svc_mapper.cpp -o dbapi_svc_mapper.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_utils.cpp -o dbapi_driver_utils.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_impl_cmd.cpp -o dbapi_impl_cmd.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_impl_connection.cpp -o dbapi_impl_connection.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_impl_context.cpp -o dbapi_impl_context.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guiIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:878:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 878 | static void Convert(const auto_ptr& rs, TValue& value) | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/plugin_manager.hpp:70, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/public.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:894:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 894 | static void Convert(const auto_ptr& rs, TValue& value) | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/plugin_manager.hpp:70, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/public.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:908:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 908 | static void Convert(const auto_ptr& rs, TValue& value) | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/plugin_manager.hpp:70, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/public.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:922:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 922 | static void Convert(const auto_ptr& rs, TValue& value) | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/plugin_manager.hpp:70, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/public.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:936:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 936 | static void Convert(const auto_ptr& rs, TValue& value) | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/plugin_manager.hpp:70, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/public.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:950:31: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 950 | static void Convert(const auto_ptr& rs, TValue& value) | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/plugin_manager.hpp:70, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/public.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp: In member function ‘ncbi::value_slice::CValueConvert::operator TO() const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:998:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 998 | auto_ptr rs(m_Stmt->Result()); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/plugin_manager.hpp:70, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/public.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp: At global scope: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:1069:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1069 | mutable auto_ptr m_Stmt; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/plugin_manager.hpp:70, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/public.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp: In member function ‘ncbi::value_slice::CValueConvert::operator TO() const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:1053:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1053 | auto_ptr rs(m_Stmt->Result()); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/plugin_manager.hpp:70, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/public.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp: In member function ‘ncbi::value_slice::CValueConvert::operator TO() const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:1109:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1109 | auto_ptr rs(m_Stmt->Result()); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/plugin_manager.hpp:70, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/public.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp: At global scope: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:1180:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1180 | mutable auto_ptr m_Stmt; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/plugin_manager.hpp:70, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/public.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp: In member function ‘ncbi::value_slice::CValueConvert::operator TO() const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:1164:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1164 | auto_ptr rs(m_Stmt->Result()); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/plugin_manager.hpp:70, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/public.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp: At global scope: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:1220:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1220 | mutable auto_ptr m_RS; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/plugin_manager.hpp:70, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/public.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:1258:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1258 | mutable auto_ptr m_Stmt; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/plugin_manager.hpp:70, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/public.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:1259:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1259 | mutable auto_ptr m_RS; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/plugin_manager.hpp:70, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/public.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/driver/dbapi_driver_convert.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp:21: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ x-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_impl_result.cpp -o dbapi_impl_result.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_conn_params.cpp -o dbapi_driver_conn_params.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_exception_storage.cpp -o dbapi_driver_exception_storage.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_object_convert.cpp -o dbapi_object_convert.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_driver_convert.cpp -o dbapi_driver_convert.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/dbapi_pool_balancer.cpp -o dbapi_pool_balancer.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libdbapi_driver.a .libdbapi_driver.a.stamp ar cr libdbapi_driver.a handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libdbapi_driver.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libdbapi_driver.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libdbapi_driver.a ln -f .dbapi_driver-static.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.dbapi_driver-static.dep /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libdbapi_driver.so .libdbapi_driver.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libdbapi_driver.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libdbapi_driver.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libdbapi_driver.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libdbapi_driver.so ln -f .dbapi_driver.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.dbapi_driver.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C util -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver/util' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver/util' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C ctlib -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver/ctlib' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver/ctlib' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C ftds95 -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver/ftds95' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver/ftds95' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C ftds100 -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver/ftds100' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver/ftds100' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C ftds-default -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver/ftds-default' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver/ftds-default' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C mysql -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver/mysql' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver/mysql' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C odbc -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver/odbc' NOTE: Skipping project odbc due to unmet requirements: ODBC make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver/odbc' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/driver/odbc TMPL=ncbi_xdbapi_odbc -w mark-as-disabled make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver/odbc' make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver/odbc' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/echo 'Warning: non-existent sub-project "samples"' Warning: non-existent sub-project "samples" make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver/odbc' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver/odbc' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C samples -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver/samples' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver/samples' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/driver' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C simple -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/simple' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/simple' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C cache -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/cache' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cache/test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cache/test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cache/test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/cache/test/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cache/admintool/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cache/admintool/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cache/admintool/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build admintool/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/cache/admintool/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cache TMPL=ncbi_xcache_dbapi -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/cache' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/cache' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cache TMPL=ncbi_xcache_dbapi -w all /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp: In member function ‘ncbi::ERW_Result ncbi::CDBAPI_CacheIWriter::x_SaveBlob(ncbi::ICursor&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp:436:46: warning: ‘virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::TBlobOStreamFlags, size_t)’ is deprecated [-Wdeprecated-declarations] 436 | ostream& out = cur.GetBlobOStream(1, m_BytesInBuffer); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/cache/dbapi_blob_cache.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/dbapi.hpp:596:27: note: declared here 596 | virtual CNcbiOstream& GetBlobOStream(unsigned int col, | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp:441:46: warning: ‘virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::TBlobOStreamFlags, size_t)’ is deprecated [-Wdeprecated-declarations] 441 | ostream& out = cur.GetBlobOStream(1, (size_t)total_bytes); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/cache/dbapi_blob_cache.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/dbapi.hpp:596:27: note: declared here 596 | virtual CNcbiOstream& GetBlobOStream(unsigned int col, | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp: In member function ‘bool ncbi::CDBAPI_Cache::x_UpdateBlob(ncbi::IStatement&, const string&, int, const string&, const void*, size_t)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp:1246:43: warning: ‘virtual ncbi::CNcbiOstream& ncbi::ICursor::GetBlobOStream(unsigned int, size_t, ncbi::TBlobOStreamFlags, size_t)’ is deprecated [-Wdeprecated-declarations] 1246 | ostream& out = cur->GetBlobOStream(1, size); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/cache/dbapi_blob_cache.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/dbapi/dbapi.hpp:596:27: note: declared here 596 | virtual CNcbiOstream& GetBlobOStream(unsigned int col, | ^~~~~~~~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/cache' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cache/dbapi_blob_cache_cf.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cache/dbapi_blob_cache.cpp -o dbapi_blob_cache.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/dbapi/cache/dbapi_blob_cache_cf.cpp -o dbapi_blob_cache_cf.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libncbi_xcache_dbapi.a .libncbi_xcache_dbapi.a.stamp ar cr libncbi_xcache_dbapi.a dbapi_blob_cache.o dbapi_blob_cache_cf.o /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libncbi_xcache_dbapi.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libncbi_xcache_dbapi.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libncbi_xcache_dbapi.a ln -f .ncbi_xcache_dbapi-static.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.ncbi_xcache_dbapi-static.dep /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libncbi_xcache_dbapi.so .libncbi_xcache_dbapi.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libncbi_xcache_dbapi.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC dbapi_blob_cache.o dbapi_blob_cache_cf.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -ldbapi -ldbapi_driver -lxncbi -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libncbi_xcache_dbapi.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libncbi_xcache_dbapi.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libncbi_xcache_dbapi.so ln -f .ncbi_xcache_dbapi.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.ncbi_xcache_dbapi.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/cache' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C test -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/cache/test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/cache/test' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C admintool -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/cache/admintool' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/cache/admintool' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/cache' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C lang_bind -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/lang_bind' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/lang_bind' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C test -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/test' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi/test' make[2]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/dbapi' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C objects -w all_r || exit 5 make[2]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects' make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/Makefile.sources builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects -w all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects || exit 2; \ for i in omssa access biblio blast blastdb blastxml blastxml2 cdd cn3d docsum biotree entrez2 entrezgene featdef gbseq general id1 id2 insdseq macro medlars medline mim mla mmdb1 mmdb2 mmdb3 ncbimime objprt proj pub pubmed scoremat seq seqalign seqblock seqcode seqfeat seqloc seqsplit seqres seqset submit taxon1 taxon3 tinyseq pcsubstance pcassay remap homologene seqedit seqtable seqtest trackmgr gbproj valerr valid genesbyloc; do \ if test -f "$i/$i.asn"; then \ MAKE="/gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w"; export MAKE; \ ( cd $i && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh $i all; ) \ || case "-w" in *k*) ;; *) exit 2 ;; esac; \ else \ echo "Warning: $i/$i.asn not found (skipping)"; \ fi; \ done /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/omssa' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m omssa.asn -M "objects/seq/seq.asn" -oA \ -oc omssa -or objects/omssa -odi -od omssa.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd omssa.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/omssa' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/access' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m access.asn -M "" -oA \ -oc access -or objects/access -odi -od access.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd access.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/access' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \ -oc biblio -or objects/biblio -odi -od biblio.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biblio.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/scoremat/scoremat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA \ -oc blast -or objects/blast -odi -od blast.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blast.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastdb' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastdb' File blastxml.module not found. Using defaults... /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m blastxml.asn -M "" -oA \ -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml' File blastxml2.module not found. Using defaults... /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml2' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m blastxml2.asn -M "" -oA \ -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml2' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/seqalign.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cn3d/cn3d.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cdd' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m cdd.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn" -oA \ -oc cdd -or objects/cdd -odi -od cdd.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cdd.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cdd' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cn3d' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m cn3d.asn -M "objects/mmdb1/mmdb1.asn" -oA \ -oc cn3d -or objects/cn3d -odi -od cn3d.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd cn3d.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cn3d' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/docsum' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m docsum.asn -M "" -oA \ -oc docsum -or objects/docsum -odi -od docsum.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd docsum.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/docsum' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biotree' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m biotree.asn -M "objects/general/general.asn" -oA \ -oc biotree -or objects/biotree -odi -od biotree.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd biotree.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biotree' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m entrez2.asn -M "" -oA \ -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m entrezgene.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn" -oA \ -oc entrezgene -or objects/entrezgene -odi -od entrezgene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd entrezgene.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/featdef' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m featdef.asn -M "" -oA \ -oc featdef -or objects/featdef -odi -od featdef.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd featdef.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/featdef' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbseq' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m gbseq.asn -M "" -oA \ -oc gbseq -or objects/gbseq -odi -od gbseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbseq.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbseq' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m general.asn -M "" -oA \ -oc general -or objects/general -odi -od general.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd general.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \ -oc id1 -or objects/id1 -odi -od id1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit/seqsplit.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id2' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \ -oc id2 -or objects/id2 -odi -od id2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id2' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/insdseq' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m insdseq.asn -M "" -oA \ -oc insdseq -or objects/insdseq -odi -od insdseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd insdseq.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/insdseq' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m macro.asn -M "" -oA \ -oc macro -or objects/macro -odi -od macro.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd macro.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medlars' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medlars -or objects/medlars -odi -od medlars.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medlars' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ -oc medline -or objects/medline -odi -od medline.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd medline.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mim' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m mim.asn -M "" -oA \ -oc mim -or objects/mim -odi -od mim.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mim.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mim' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medlars/medlars.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pubmed/pubmed.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mla' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA \ -oc mla -or objects/mla -odi -od mla.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mla' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb1' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m mmdb1.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb1 -or objects/mmdb1 -odi -od mmdb1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb1.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb1' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb2' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m mmdb2.asn -M "objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn" -oA \ -oc mmdb2 -or objects/mmdb2 -odi -od mmdb2.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb2.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb2' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb3' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m mmdb3.asn -M "objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn" -oA \ -oc mmdb3 -or objects/mmdb3 -odi -od mmdb3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd mmdb3.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb3' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cn3d/cn3d.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m ncbimime.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn" -oA \ -oc ncbimime -or objects/ncbimime -odi -od ncbimime.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd ncbimime.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/objprt' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m objprt.asn -M "" -oA \ -oc objprt -or objects/objprt -odi -od objprt.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objprt.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/objprt' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pubmed/pubmed.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/proj' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m proj.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn" -oA \ -oc proj -or objects/proj -odi -od proj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd proj.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/proj' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pub -or objects/pub -odi -od pub.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pubmed' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pubmed' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/scoremat' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \ -oc scoremat -or objects/scoremat -odi -od scoremat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd scoremat.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/scoremat' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqblock/seqblock.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/seqalign.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqres/seqres.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA \ -oc seq -or objects/seq -odi -od seq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqalign -or objects/seqalign -odi -od seqalign.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqalign.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqblock' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqblock -or objects/seqblock -odi -od seqblock.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqblock' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqcode' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m seqcode.asn -M "" -oA \ -oc seqcode -or objects/seqcode -odi -od seqcode.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqcode.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqcode' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA \ -oc seqfeat -or objects/seqfeat -odi -od seqfeat.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqfeat.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqloc -or objects/seqloc -odi -od seqloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqloc.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/seqalign.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \ -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqres' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ -oc seqres -or objects/seqres -odi -od seqres.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqres' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \ -oc seqset -or objects/seqset -odi -od seqset.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/submit' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA \ -oc submit -or objects/submit -odi -od submit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/submit' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA \ -oc taxon3 -or objects/taxon3 -odi -od taxon3.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd taxon3.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/tinyseq' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m tinyseq.asn -M "" -oA \ -oc tinyseq -or objects/tinyseq -odi -od tinyseq.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd tinyseq.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/tinyseq' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m pcsubstance.asn -M "objects/general/general.asn objects/pub/pub.asn" -oA \ -oc pcsubstance -or objects/pcsubstance -odi -od pcsubstance.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcsubstance.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcassay' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m pcassay.asn -M "objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn" -oA \ -oc pcassay -or objects/pcassay -odi -od pcassay.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd pcassay.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcassay' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/remap' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m remap.asn -M "objects/seqloc/seqloc.asn" -oA \ -oc remap -or objects/remap -odi -od remap.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd remap.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/remap' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/seqalign.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/homologene' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m homologene.asn -M "objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn" -oA \ -oc homologene -or objects/homologene -odi -od homologene.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd homologene.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/homologene' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/seqalign.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqedit' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \ -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqedit' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtable' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA \ -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtable' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objectWarning: (810.1) No service name provided for CTrackMgrClient s/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/seqalign.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtest' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m seqtest.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc seqtest -or objects/seqtest -odi -od seqtest.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd seqtest.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtest' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m trackmgr.asn -M "objects/seqloc/seqloc.asn objects/general/general.asn" -oA \ -oc trackmgr -or objects/trackmgr -odi -od trackmgr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd trackmgr.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/submit/submit.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m gbproj.asn -M "objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn" -oA \ -oc gbproj -or objects/gbproj -odi -od gbproj.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gbproj.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valerr' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m valerr.asn -M "" -oA \ -oc valerr -or objects/valerr -odi -od valerr.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valerr.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valerr' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m valid.asn -M "" -oA \ -oc valid -or objects/valid -odi -od valid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd valid.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m genesbyloc.asn -M "" -oA \ -oc genesbyloc -or objects/genesbyloc -odi -od genesbyloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genesbyloc.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C general -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/general' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/general/test/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/unit_test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/unit_test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/unit_test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build unit_test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/general/unit_test/Makefile cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh general all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general TMPL=general -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/general' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/general' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general TMPL=general -w all _srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m genesbyloc.asn -M "" -oA \ -oc genesbyloc -or objects/genesbyloc -odi -od genesbyloc.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genesbyloc.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/Date_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/Date_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/general' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/uoconv.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general__.cpp -o general__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general___.cpp -o general___.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/uoconv.cpp -o uoconv.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libgeneral.so .libgeneral.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libgeneral.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC general__.o general___.o uoconv.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxser -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libgeneral.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libgeneral.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libgeneral.so ln -f .general.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.general.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/general' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C test -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/general/test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/general/test' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C unit_test -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/general/unit_test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/general/unit_test' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/general' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C biblio -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/biblio' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh biblio all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio TMPL=biblio -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/biblio' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/biblio' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio TMPL=biblio -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/Affil_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/Affil_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/biblio' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/citation_base.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio__.cpp -o biblio__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio___.cpp -o biblio___.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libbiblio.so .libbiblio.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libbiblio.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC biblio__.o biblio___.o citation_base.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lgeneral -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libbiblio.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libbiblio.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libbiblio.so ln -f .biblio.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.biblio.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/biblio' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/biblio' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C medline -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/medline' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh medline all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline TMPL=medline -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/medline' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/medline' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline TMPL=medline -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/DocRef_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/DocRef_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/medline' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline__.cpp -o medline__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline___.cpp -o medline___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libmedline.so .libmedline.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libmedline.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC medline__.o medline___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lbiblio -lgeneral -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libmedline.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libmedline.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libmedline.so ln -f .medline.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.medline.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/medline' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/medline' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C pub -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/pub' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh pub all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub TMPL=pub -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/pub' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/pub' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub TMPL=pub -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/Pub_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/Pub_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/pub' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub__.cpp -o pub__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub___.cpp -o pub___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libpub.so .libpub.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libpub.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC pub__.o pub___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lmedline -lbiblio -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libpub.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libpub.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libpub.so ln -f .pub.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.pub.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/pub' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/pub' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C seqcode -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqcode' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqcode && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh seqcode all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqcode' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqcode' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqcode' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqcode' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqcode TMPL=seqcode -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqcode' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqcode' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqcode TMPL=seqcode -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqcode' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqcode' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqcode/Seq_code_set_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqcode/seqcode___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqcode/Seq_code_set_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqcode/seqcode___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqcode' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqcode/seqcode___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqcode/seqcode__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libseqcode.so .libseqcode.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libseqcode.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC seqcode__.o seqcode___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libseqcode.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libseqcode.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libseqcode.so ln -f .seqcode.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.seqcode.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqcode' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqcode' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C seq -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seq' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seq/test/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/unit_test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/unit_test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/unit_test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build unit_test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seq/unit_test/Makefile make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seq' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/Makefile.sources builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -w all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seq' status=0 ; \ MAKE="/gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../$x ; \ (cd $d && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqblock' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqblock' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqres' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqres' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtable' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtable' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seq' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seq' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh seq all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqblock/seqblock.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/seqalign.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqres/seqres.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq TMPL=seq -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seq' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seq' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq TMPL=seq -w all 2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtable' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtable' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seq' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqblock/seqblock.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/seqalign.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqres/seqres.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/Bioseq.cpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq__.cpp:6: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Align_def_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Align_def.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/Align_def.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq__.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/Bioseq.cpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq__.cpp:6: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Align_def_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Align_def.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/Align_def.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq__.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function ‘void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1382:41: warning: ‘void ncbi::objects::CDense_seg::RemapToLoc(ncbi::objects::CDense_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’ is deprecated [-Wdeprecated-declarations] 1382 | SetSegs().SetDenseg().RemapToLoc(row, dst_loc, ignore_strand); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:3, from seqalign__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqalign/Dense_seg.cpp:909:6: note: declared here 909 | void CDense_seg::RemapToLoc(TDim row, const CSeq_loc& loc, | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1386:34: warning: ‘void ncbi::objects::CStd_seg::RemapToLoc(ncbi::objects::CStd_seg_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’ is deprecated [-Wdeprecated-declarations] 1386 | (*std_it)->RemapToLoc(row, dst_loc, ignore_strand); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Std_seg.hpp:79:26: note: declared here 79 | NCBI_DEPRECATED void RemapToLoc(TDim row, | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1391:40: warning: ‘void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)’ is deprecated [-Wdeprecated-declarations] 1391 | (*seq_align_it)->RemapToLoc(row, dst_loc, ignore_strand); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqalign/Seq_align.cpp:1365:6: note: declared here 1365 | void CSeq_align::RemapToLoc(TDim row, | ^~~~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seq' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_loc_from_string.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/so_map.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/sofa_map.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seqlocinfo.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_id_mapper.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_id_handle.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_id_tree.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seqport_util.cpp. Updating dependency information for seqtable___.cpp. Updating dependency information for seqres___.cpp. Updating dependency information for seqloc___.cpp. Updating dependency information for seqfeat___.cpp. Updating dependency information for seqblock___.cpp. Updating dependency information for seqalign___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq___.cpp. Updating dependency information for seqtable__.cpp. Updating dependency information for seqres__.cpp. Updating dependency information for seqloc__.cpp. Updating dependency information for seqfeat__.cpp. Updating dependency information for seqblock__.cpp. Updating dependency information for seqalign__.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq__.cpp -o seq__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include seqalign__.cpp -o seqalign__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/BioSource.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:3, from seqfeat__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/BioSource.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:3, from seqfeat__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:15, from seqfeat__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:19, from seqfeat__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/Genetic_code_table.cpp: In static member function ‘static void ncbi::objects::CGen_code_table::LoadTransTable(const string&, ncbi::ESerialDataFormat)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/Genetic_code_table.cpp:379:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 379 | auto_ptr ois(CObjectIStream::Open(path, format)); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:19, from seqfeat__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/Genetic_code_table.cpp: In constructor ‘ncbi::objects::CGen_code_table_imp::CGen_code_table_imp()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/Genetic_code_table.cpp:452:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 452 | auto_ptr | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:30, from seqfeat__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp: In static member function ‘static bool ncbi::objects::CPCRPrimerSeq::Fixi(std::string&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/PCRPrimerSeq.cpp:249:25: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] 249 | pos = NStr::Find(seq, "i", pos, NPOS, NStr::eFirst, NStr::eCase); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:5308:11: note: declared here 5308 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, | ^~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:42, from seqfeat__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/RNA_ref.cpp: In function ‘ncbi::CTempString ncbi::objects::s_AaName(int)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/RNA_ref.cpp:124:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 124 | if (idx > 0 && idx < ArraySize(sc_TrnaList)) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:44, from seqfeat__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/SeqFeatData.cpp: In static member function ‘static const ncbi::objects::CFeatList* ncbi::objects::CSeqFeatData::GetFeatList()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/SeqFeatData.cpp:3749:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 3749 | static auto_ptr theFeatList; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:44, from seqfeat__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/SeqFeatData.cpp: In static member function ‘static const ncbi::objects::CBondList* ncbi::objects::CSeqFeatData::GetBondList()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/SeqFeatData.cpp:3763:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 3763 | static auto_ptr theBondList; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:44, from seqfeat__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/SeqFeatData.cpp: In static member function ‘static const ncbi::objects::CSiteList* ncbi::objects::CSeqFeatData::GetSiteList()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/SeqFeatData.cpp:3778:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 3778 | static auto_ptr theSiteList; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48, from seqfeat__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp: At global scope: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:54:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 54 | auto_ptr CSubSource::m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48, from seqfeat__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:55:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 55 | auto_ptr CSubSource::m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2, from seqfeat__.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48, from seqfeat__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static void ncbi::objects::CSubSource::IsCorrectDateFormat(const string&, bool&, bool&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:462:14: warning: catching polymorphic type ‘class ncbi::CException’ by value [-Wcatch-value=] 462 | } catch (CException ) { | ^~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function ‘static size_t ncbi::objects::CSubSource::CheckDateFormat(const string&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:484:22: warning: catching polymorphic type ‘class ncbi::CException’ by value [-Wcatch-value=] 484 | } catch (CException) { | ^~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/SubSource.cpp:514:14: warning: catching polymorphic type ‘class ncbi::CException’ by value [-Wcatch-value=] 514 | } catch (CException) { | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/Seq_id.cpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:10, from seqloc__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Giimport_id.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, from seqloc__.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:13, from seqloc__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/Seq_loc.cpp: In function ‘void ncbi::objects::x_MergeAndSort(ncbi::objects::CSeq_loc&, const ncbi::objects::CSeq_loc&, ncbi::objects::CSeq_loc::TOpFlags, ncbi::objects::ISynonymMapper&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/Seq_loc.cpp:4632:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 4632 | auto_ptr pid_map_minus(use_strand ? | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Giimport_id.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, from seqloc__.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:13, from seqloc__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/Seq_loc.cpp: In function ‘void ncbi::objects::x_SubAndSort(ncbi::objects::CSeq_loc&, const ncbi::objects::CSeq_loc&, const TFuzzMap&, const TFuzzMap&, const TFuzzMap&, const TFuzzMap&, ncbi::objects::TIdToRangeColl&, ncbi::objects::TIdToRangeColl&, ncbi::objects::ISynonymMapper&, ncbi::objects::ILengthGetter&, ncbi::objects::CSeq_loc::TOpFlags)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/Seq_loc.cpp:4917:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 4917 | auto_ptr p_id_map_minus(use_strand ? | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Giimport_id.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, from seqloc__.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:13, from seqloc__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/Seq_loc.cpp: In member function ‘ncbi::CRef ncbi::objects::CSeq_loc::Merge(ncbi::objects::CSeq_loc::TOpFlags, ncbi::objects::ISynonymMapper*) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/Seq_loc.cpp:5024:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 5024 | auto_ptr p_mapper; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Giimport_id.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, from seqloc__.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:13, from seqloc__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/Seq_loc.cpp: In member function ‘ncbi::CRef ncbi::objects::CSeq_loc::Add(const ncbi::objects::CSeq_loc&, ncbi::objects::CSeq_loc::TOpFlags, ncbi::objects::ISynonymMapper*) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/Seq_loc.cpp:5048:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 5048 | auto_ptr p_mapper; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Giimport_id.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, from seqloc__.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:13, from seqloc__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/Seq_loc.cpp: In member function ‘ncbi::CRef ncbi::objects::CSeq_loc::Subtract(const ncbi::objects::CSeq_loc&, ncbi::objects::CSeq_loc::TOpFlags, ncbi::objects::ISynonymMapper*, ncbi::objects::ILengthGetter*) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/Seq_loc.cpp:5076:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 5076 | auto_ptr p_mapper; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Giimport_id.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, from seqloc__.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:13, from seqloc__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/Seq_loc.cpp:5081:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 5081 | auto_ptr p_getter; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Giimport_id.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, from seqloc__.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:13, from seqloc__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/Seq_loc.cpp:5092:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 5092 | auto_ptr p_rg_coll_minus(use_strand ? | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Giimport_id.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, from seqloc__.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:13, from seqloc__.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/Seq_loc.cpp: In member function ‘ncbi::CRef ncbi::objects::CSeq_loc::Intersect(const ncbi::objects::CSeq_loc&, ncbi::objects::CSeq_loc::TOpFlags, ncbi::objects::ISynonymMapper*) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/Seq_loc.cpp:5171:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 5171 | auto_ptr len_getter(new CDummyLengthGetter); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Giimport_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Giimport_id.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/Giimport_id.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/seqloc__.cpp:2, from seqloc__.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/Align_def_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/Align_def_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/Seqdesc_.cpp:55, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq___.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/Align_def_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/Seqdesc_.cpp:55, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq___.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/Align_def_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqalign/seqalign___.cpp:2, from seqalign___.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqalign/seqalign___.cpp:2, from seqalign___.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include seqblock__.cpp -o seqblock__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include seqfeat__.cpp -o seqfeat__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include seqloc__.cpp -o seqloc__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include seqres__.cpp -o seqres__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include seqtable__.cpp -o seqtable__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq___.cpp -o seq___.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include seqalign___.cpp -o seqalign___.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -D_DEBUG -D_LARGEFILIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqblock/seqblock___.cpp:2, from seqblock___.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqblock/seqblock___.cpp:2, from seqblock___.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2, from seqfeat___.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2, from seqfeat___.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/BioSource_.cpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:3, from seqfeat___.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2, from seqfeat___.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/BioSource_.cpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:3, from seqfeat___.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2, from seqfeat___.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/seqloc___.cpp:2, from seqloc___.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqloc/seqloc___.cpp:2, from seqloc___.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqres/seqres___.cpp:2, from seqres___.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqres/seqres___.cpp:2, from seqres___.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqtable/seqtable___.cpp:2, from seqtable___.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/../seqtable/seqtable___.cpp:2, from seqtable___.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seqport_util.cpp: In member function ‘ncbi::CRef ncbi::objects::CSeqportUtil_implementation::Init()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seqport_util.cpp:1307:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1307 | auto_ptr | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seqport_util.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seqport_util.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seqport_util.cpp: In member function ‘ncbi::TSeqPos ncbi::objects::CSeqportUtil_implementation::MapIupacnaToNcbi2na(const ncbi::objects::CSeq_data&, ncbi::objects::CSeq_data*, ncbi::TSeqPos, ncbi::TSeqPos, bool, ncbi::CRandom::TValue, ncbi::TSeqPos, ncbi::TSeqPos*, std::vector*) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seqport_util.cpp:2923:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2923 | auto_ptr amb_context(NULL); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seqport_util.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seqport_util.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seqport_util.cpp: In member function ‘ncbi::TSeqPos ncbi::objects::CSeqportUtil_implementation::MapNcbi4naToNcbi2na(const ncbi::objects::CSeq_data&, ncbi::objects::CSeq_data*, ncbi::TSeqPos, ncbi::TSeqPos, bool, ncbi::CRandom::TValue, ncbi::TSeqPos, ncbi::TSeqPos*, std::vector*) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seqport_util.cpp:3228:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 3228 | auto_ptr amb_context(NULL); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seqport_util.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seqport_util.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_id_tree.cpp: In member function ‘virtual void ncbi::objects::CSeq_id_Giim_Tree::FindMatchStr(const string&, ncbi::objects::CSeq_id_Which_Tree::TSeq_id_MatchList&) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_id_tree.cpp:2864:12: warning: catching polymorphic type ‘class ncbi::CStringException’ by value [-Wcatch-value=] 2864 | catch (CStringException) { | ^~~~~~~~~~~~~~~~ E_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include seqblock___.cpp -o seqblock___.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include seqfeat___.cpp -o seqfeat___.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include seqloc___.cpp -o seqloc___.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include seqres___.cpp -o seqres___.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include seqtable___.cpp -o seqtable___.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-b/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function ‘void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstStd(ncbi::CRef&) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:1505:32: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1505 | if ( row_n == p_row ) { | ~~~~~~^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function ‘void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstDisc(ncbi::CRef&) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:1651:16: warning: catching polymorphic type ‘class ncbi::objects::CAnnotMapperException’ by value [-Wcatch-value=] 1651 | catch (CAnnotMapperException) { | ^~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function ‘virtual ncbi::objects::CSeq_align_Mapper_Base* ncbi::objects::CSeq_align_Mapper_Base::CreateSubAlign(const ncbi::objects::CSpliced_seg&, const ncbi::objects::CSpliced_exon&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:3064:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 3064 | auto_ptr sub( | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_align_mapper_base.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/sofa_map.cpp:44:29: warning: ‘CSofaMap’ is deprecated [-Wdeprecated-declarations] 44 | CSofaMap::TYPEMAP CSofaMap::mMapSofaTypeToId; | ^~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/sofa_map.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/sofa_map.hpp:43:39: note: declared here 43 | class NCBI_DEPRECATED NCBI_SEQ_EXPORT CSofaMap | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/sofa_map.cpp:46:29: warning: ‘CSofaMap’ is deprecated [-Wdeprecated-declarations] 46 | CSofaMap::TYPEMAP CSofaMap::mMapSofaIdToType = { | ^~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/sofa_map.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/sofa_map.hpp:43:39: note: declared here 43 | class NCBI_DEPRECATED NCBI_SEQ_EXPORT CSofaMap | ^~~~~~~~ last+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/sofa_map.cpp -o sofa_map.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp: In function ‘ncbi::objects::CSeq_interval* ncbi::objects::s_SeqIntRevCmp(const ncbi::objects::CSeq_interval&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:60:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 60 | auto_ptr rev_int(new CSeq_interval); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp: In function ‘ncbi::objects::CSeq_point* ncbi::objects::s_SeqPntRevCmp(const ncbi::objects::CSeq_point&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:72:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | auto_ptr rev_pnt(new CSeq_point); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp: In function ‘ncbi::objects::CSeq_loc* ncbi::objects::GetReverseComplement(const ncbi::objects::CSeq_loc&, ncbi::objects::CReverseComplementHelper*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:86:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 86 | auto_ptr rev_loc( new CSeq_loc ); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/so_map.cpp -o so_map.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libseq.so .libseq.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libseq.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o sofa_map.o so_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lseqcode -lpub -lgeneral -lxser -lsequtil -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libseq.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libseq.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libseq.so ln -f .seq.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.seq.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seq' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C test -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seq/test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seq/test' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C unit_test -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seq/unit_test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seq/unit_test' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seq' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C seqset -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqset' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqset/test/Makefile cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh seqset all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset TMPL=seqset -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqset' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqset' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset TMPL=seqset -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/Bioseq_set_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/Bioseq_set_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/gb_release_file.cpp:68:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 68 | auto_ptr m_In; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqset/gb_release_file.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/gb_release_file.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqset' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/gb_release_file.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset__.cpp -o seqset__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset___.cpp -o seqset___.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libseqset.so .libseqset.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libseqset.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC seqset__.o seqset___.o gb_release_file.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lseq -lseqcode -lsequtil -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libseqset.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libseqset.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libseqset.so ln -f .seqset.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.seqset.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqset' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C test -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqset/test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqset/test' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqset' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C submit -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/submit' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/submit && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh submit all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/submit' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/submit' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/submit' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/submit' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/submit TMPL=submit -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/submit' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/submit' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/submit TMPL=submit -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/submit' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/submit' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/submit/Contact_info_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/submit/submit___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/submit/Contact_info_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/submit/submit___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/submit' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/submit/submit___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/submit/submit__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/submit/submit__.cpp -o submit__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/submit/submit___.cpp -o submit___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libsubmit.so .libsubmit.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libsubmit.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC submit__.o submit___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libsubmit.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libsubmit.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libsubmit.so ln -f .submit.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.submit.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/submit' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/submit' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C seqedit -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqedit' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqedit && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh seqedit all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/seqalign.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqedit' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqedit' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqedit' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqedit' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqedit TMPL=seqedit -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqedit' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqedit' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqedit TMPL=seqedit -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/seqalign.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqedit' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqedit' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqedit/seqedit___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqedit/seqedit___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqedit' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqedit/seqedit___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqedit/seqedit__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libseqedit.so .libseqedit.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libseqedit.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC seqedit__.o seqedit___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libseqedit.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libseqedit.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libseqedit.so ln -f .seqedit.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.seqedit.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqedit' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqedit' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C seqsplit -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqsplit' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh seqsplit all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/seqalign.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit TMPL=seqsplit -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqsplit' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqsplit' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit TMPL=seqsplit -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/seqalign.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit/seqsplit___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit/seqsplit___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqsplit' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit/seqsplit___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit/seqsplit__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libseqsplit.so .libseqsplit.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libseqsplit.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC seqsplit__.o seqsplit___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libseqsplit.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libseqsplit.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libseqsplit.so ln -f .seqsplit.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.seqsplit.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqsplit' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqsplit' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C id1 -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/id1' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/id1' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1/test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1/test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1/test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/id1/test/Makefile cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1 && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh id1 all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1' make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1 TMPL=id1 -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/id1' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/id1' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1 TMPL=id1cli -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/id1' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/id1' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1 TMPL=id1 -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1/Entry_complexities_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1/id1___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1/Entry_complexities_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1/id1___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/id1' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1/id1___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1/id1__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1/id1__.cpp -o id1__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1/id1___.cpp -o id1___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libid1.so .libid1.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libid1.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC id1__.o id1___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lseqset -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libid1.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libid1.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libid1.so ln -f .id1.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.id1.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/id1' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1 TMPL=id1cli -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1/id1_client_.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1/id1_client_.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/id1' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1/id1_client_.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1/id1_client.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1/id1_client.cpp -o id1_client.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id1/id1_client_.cpp -o id1_client_.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libid1cli.so .libid1cli.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libid1cli.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC id1_client.o id1_client_.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lid1 -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libid1cli.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libid1cli.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libid1cli.so ln -f .id1cli.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.id1cli.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/id1' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/id1' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C test -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/id1/test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/id1/test' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/id1' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C id2 -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/id2' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/id2' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id2 && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh id2 all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit/seqsplit.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id2' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id2' make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id2' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id2' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id2 TMPL=id2 -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/id2' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/id2' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id2 TMPL=id2cli -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/id2' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/id2' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id2 TMPL=id2 -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqsplit/seqsplit.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id2' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id2' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id2/id2___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id2/id2___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/id2' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id2/id2___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id2/id2__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id2/id2__.cpp -o id2__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id2/id2___.cpp -o id2___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libid2.so .libid2.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libid2.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC id2__.o id2___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libid2.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libid2.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libid2.so ln -f .id2.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.id2.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/id2' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id2 TMPL=id2cli -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id2/id2_client_.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id2/id2_client_.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/id2' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id2/id2_client_.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id2/id2_client.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id2/id2_client.cpp -o id2_client.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/id2/id2_client_.cpp -o id2_client_.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libid2cli.so .libid2cli.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libid2cli.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC id2_client.o id2_client_.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libid2cli.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libid2cli.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libid2cli.so ln -f .id2cli.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.id2cli.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/id2' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/id2' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/id2' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C entrez2 -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/entrez2' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/entrez2' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/demo/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/demo/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/demo/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build demo/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/entrez2/demo/Makefile cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2 && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh entrez2 all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2' make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2 TMPL=entrez2 -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/entrez2' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/entrez2' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2 TMPL=entrez2cli -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/entrez2' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/entrez2' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2 TMPL=entrez2 -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/E2Reply_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/entrez2___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/E2Reply_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/entrez2___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/entrez2' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/entrez2___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/entrez2__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libentrez2.so .libentrez2.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libentrez2.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC entrez2__.o entrez2___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libentrez2.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libentrez2.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libentrez2.so ln -f .entrez2.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.entrez2.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/entrez2' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2 TMPL=entrez2cli -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/entrez2_client_.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/entrez2_client_.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/entrez2' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/entrez2_client_.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/entrez2_client.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libentrez2cli.so .libentrez2cli.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libentrez2cli.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC entrez2_client.o entrez2_client_.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lentrez2 -lxconnect -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libentrez2cli.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libentrez2cli.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libentrez2cli.so ln -f .entrez2cli.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.entrez2cli.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/entrez2' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/entrez2' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C demo -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/entrez2/demo' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/entrez2/demo' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/entrez2' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C pubmed -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/pubmed' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pubmed && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh pubmed all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pubmed' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pubmed' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pubmed' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pubmed' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pubmed TMPL=pubmed -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/pubmed' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/pubmed' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pubmed TMPL=pubmed -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pubmed' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pubmed' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pubmed/Pubmed_entry_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pubmed/pubmed___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pubmed/Pubmed_entry_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pubmed/pubmed___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/pubmed' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pubmed/pubmed___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pubmed/pubmed__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pubmed/pubmed__.cpp -o pubmed__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libpubmed.so .libpubmed.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libpubmed.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC pubmed__.o pubmed___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libpubmed.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libpubmed.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libpubmed.so ln -f .pubmed.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.pubmed.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/pubmed' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/pubmed' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C medlars -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/medlars' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medlars && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh medlars all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medlars' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medlars' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medlars' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medlars' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medlars TMPL=medlars -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/medlars' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/medlars' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medlars TMPL=medlars -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medlars' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medlars' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medlars/Medlars_entry_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medlars/medlars___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medlars/Medlars_entry_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medlars/medlars___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/medlars' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medlars/medlars___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medlars/medlars__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medlars/medlars__.cpp -o medlars__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medlars/medlars___.cpp -o medlars___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libmedlars.so .libmedlars.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libmedlars.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC medlars__.o medlars___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libmedlars.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libmedlars.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libmedlars.so ln -f .medlars.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.medlars.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/medlars' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/medlars' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C mla -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mla' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mla' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mla && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh mla all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medlars/medlars.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pubmed/pubmed.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mla' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mla' make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mla' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mla' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mla TMPL=mla -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mla' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mla' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mla TMPL=mlacli -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mla' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mla' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mla TMPL=mla -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medlars/medlars.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pubmed/pubmed.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mla' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mla' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mla/Error_val_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mla/mla___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mla/Error_val_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mla/mla___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mla' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mla/mla___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mla/mla__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mla/mla__.cpp -o mla__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mla/mla___.cpp -o mla___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libmla.so .libmla.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libmla.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC mla__.o mla___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libmla.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libmla.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libmla.so ln -f .mla.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.mla.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mla' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mla TMPL=mlacli -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mla/mla_client_.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mla/mla_client_.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mla' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mla/mla_client_.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mla/mla_client.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mla/mla_client.cpp -o mla_client.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libmlacli.so .libmlacli.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libmlacli.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC mla_client.o mla_client_.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lmla -lpubmed -lmedlars -lxconnect -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libmlacli.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libmlacli.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libmlacli.so ln -f .mlacli.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.mlacli.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mla' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mla' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mla' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C proj -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/proj' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/proj && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh proj all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pubmed/pubmed.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/proj' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/proj' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/proj' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/proj' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/proj TMPL=proj -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/proj' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/proj' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/proj TMPL=proj -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=proj MODULE_PATH=objects/proj MODULE_ASN=proj.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pubmed/pubmed objects/seqloc/seqloc objects/seq/seq objects/seqset/seqset' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pubmed/pubmed.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pubmed/pubmed.asn objects/seqloc/seqloc.asn objects/seq/seq.asn objects/seqset/seqset.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/proj' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/proj' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/proj/Projdesc_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/proj/proj___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/proj/Projdesc_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/proj/proj___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/proj' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/proj/proj___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/proj/proj__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/proj/proj__.cpp -o proj__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/proj/proj___.cpp -o proj___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libproj.so .libproj.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libproj.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC proj__.o proj___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libproj.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libproj.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libproj.so ln -f .proj.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.proj.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/proj' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/proj' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C scoremat -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/scoremat' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/scoremat && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh scoremat all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/scoremat' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/scoremat' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/scoremat' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/scoremat' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/scoremat TMPL=scoremat -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/scoremat' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/scoremat' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/scoremat TMPL=scoremat -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/scoremat' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/scoremat' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/scoremat/BlockProperty_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/scoremat/scoremat___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/scoremat/BlockProperty_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/scoremat/scoremat___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/scoremat' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/scoremat/scoremat___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/scoremat/scoremat__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libscoremat.so .libscoremat.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libscoremat.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC scoremat__.o scoremat___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lseqset -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libscoremat.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libscoremat.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libscoremat.so ln -f .scoremat.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.scoremat.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/scoremat' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/scoremat' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C blast -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blast' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blast' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh blast all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/scoremat/scoremat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast' make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast TMPL=blast -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blast' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast TMPL=xnetblastcli -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blast' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast TMPL=blast -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/scoremat/scoremat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast/Blas_get_searc_resul_reply_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast/blast___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast/Blas_get_searc_resul_reply_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast/blast___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blast' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast/names.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast/blast___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast/blast__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast/blast__.cpp -o blast__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast/blast___.cpp -o blast___.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast/names.cpp -o names.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxnetblast.so .libxnetblast.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxnetblast.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC blast__.o blast___.o names.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lseqset -lscoremat -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxnetblast.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxnetblast.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxnetblast.so ln -f .xnetblast.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xnetblast.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast TMPL=xnetblastcli -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast/blastclient_.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast/blastclient_.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blast' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast/blastclient_.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast/blastclient.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast/blastclient.cpp -o blastclient.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxnetblastcli.so .libxnetblastcli.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxnetblastcli.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC blastclient.o blastclient_.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxconnect -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxnetblastcli.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxnetblastcli.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxnetblastcli.so ln -f .xnetblastcli.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xnetblastcli.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blast' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blast' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C blastdb -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blastdb' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastdb && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh blastdb all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastdb' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastdb' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastdb' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastdb' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastdb TMPL=blastdb -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blastdb' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blastdb' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastdb TMPL=blastdb -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastdb' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastdb' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastdb/blastdb___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastdb/blastdb___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blastdb' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastdb/blastdb___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastdb/blastdb__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastdb/blastdb__.cpp -o blastdb__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libblastdb.so .libblastdb.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libblastdb.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC blastdb__.o blastdb___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxser -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libblastdb.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libblastdb.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libblastdb.so ln -f .blastdb.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.blastdb.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blastdb' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blastdb' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C blastxml -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blastxml' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh blastxml all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml TMPL=blastxml -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blastxml' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blastxml' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml TMPL=blastxml -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml/BlastOutput_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml/blastxml___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml/BlastOutput_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml/blastxml___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blastxml' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml/blastxml___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml/blastxml__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libblastxml.so .libblastxml.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libblastxml.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC blastxml__.o blastxml___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libblastxml.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libblastxml.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libblastxml.so ln -f .blastxml.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.blastxml.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blastxml' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blastxml' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C blastxml2 -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blastxml2' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml2 && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh blastxml2 all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml2' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml2' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml2' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml2' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blastxml2' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blastxml2' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml2 TMPL=blastxml2 -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml2' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml2' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml2/BlastOutput2_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml2/blastxml2___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml2/BlastOutput2_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml2/blastxml2___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blastxml2' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml2/blastxml2___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml2/blastxml2__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libblastxml2.so .libblastxml2.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libblastxml2.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC blastxml2__.o blastxml2___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libblastxml2.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libblastxml2.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libblastxml2.so ln -f .blastxml2.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.blastxml2.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blastxml2' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/blastxml2' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C mmdb -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mmdb' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mmdb' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/Makefile.sources builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb -w all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mmdb' status=0 ; \ MAKE="/gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w"; \ export MAKE; \ for x in mmdb1 mmdb2 mmdb3; do \ d=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/../$x ; \ (cd $d && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh) || status=9 ; \ test -f ${x}__.cpp || \ echo "#include \"../$x/${x}__.cpp\"" > ${x}__.cpp ; \ test -f ${x}___.cpp || \ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb1 MODULE_PATH=objects/mmdb1 MODULE_ASN=mmdb1.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb2/mmdb2 objects/mmdb3/mmdb3' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb1' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb1' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb2 MODULE_PATH=objects/mmdb2 MODULE_ASN=mmdb2.asn MODULE_IMPORT='objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb3/mmdb3' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb3/mmdb3.asn' IMPFILES='objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb3/mmdb3.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb2' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb2' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=mmdb3 MODULE_PATH=objects/mmdb3 MODULE_ASN=mmdb3.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/mmdb1/mmdb1 objects/mmdb2/mmdb2' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb3' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb3' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mmdb' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mmdb' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb TMPL=mmdb -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mmdb' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mmdb' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb TMPL=mmdb -w all .0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb2/mmdb2.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb3' make[6]: Nothing to be done for 'all'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb3' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mmdb' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/../mmdb1/Atom_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/../mmdb1/mmdb1___.cpp:2, from mmdb1___.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/../mmdb1/Atom_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/../mmdb1/mmdb1___.cpp:2, from mmdb1___.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/../mmdb1/Biomol_descr_.cpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/../mmdb1/mmdb1___.cpp:6, from mmdb1___.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/../mmdb1/Atom_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/../mmdb1/mmdb1___.cpp:2, from mmdb1___.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/../mmdb1/Biomol_descr_.cpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/../mmdb1/mmdb1___.cpp:6, from mmdb1___.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/../mmdb1/Atom_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/../mmdb1/mmdb1___.cpp:2, from mmdb1___.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/../mmdb2/Alternate_conformation_id_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/../mmdb2/mmdb2___.cpp:2, from mmdb2___.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/../mmdb2/Alternate_conformation_id_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/../mmdb2/mmdb2___.cpp:2, from mmdb2___.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/../mmdb3/Align_stats_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/../mmdb3/mmdb3___.cpp:2, from mmdb3___.cpp:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/../mmdb3/Align_stats_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb/../mmdb3/mmdb3___.cpp:2, from mmdb3___.cpp:1: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mmdb' Updating dependency information for mmdb3___.cpp. Updating dependency information for mmdb2___.cpp. Updating dependency information for mmdb1___.cpp. Updating dependency information for mmdb3__.cpp. Updating dependency information for mmdb2__.cpp. Updating dependency information for mmdb1__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include mmdb1__.cpp -o mmdb1__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include mmdb2__.cpp -o mmdb2__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include mmdb3__.cpp -o mmdb3__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include mmdb1___.cpp -o mmdb1___.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include mmdb2___.cpp -o mmdb2___.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include mmdb3___.cpp -o mmdb3___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libmmdb.so .libmmdb.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libmmdb.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC mmdb1__.o mmdb2__.o mmdb3__.o mmdb1___.o mmdb2___.o mmdb3___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lseq -lseqcode -lsequtil -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libmmdb.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libmmdb.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libmmdb.so ln -f .mmdb.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.mmdb.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mmdb' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mmdb' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C cn3d -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/cn3d' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cn3d && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh cn3d all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cn3d' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cn3d' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cn3d' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cn3d' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cn3d TMPL=cn3d -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/cn3d' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/cn3d' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cn3d TMPL=cn3d -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=cn3d MODULE_PATH=objects/cn3d MODULE_ASN=cn3d.asn MODULE_IMPORT='objects/mmdb1/mmdb1' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb1/mmdb1.asn' IMPFILES='objects/mmdb1/mmdb1.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cn3d' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cn3d' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cn3d/Cn3d_GL_matrix_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cn3d/cn3d___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cn3d/Cn3d_GL_matrix_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cn3d/cn3d___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/cn3d' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cn3d/cn3d___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cn3d/cn3d__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cn3d/cn3d__.cpp -o cn3d__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cn3d/cn3d___.cpp -o cn3d___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libcn3d.so .libcn3d.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libcn3d.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC cn3d__.o cn3d___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libcn3d.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libcn3d.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libcn3d.so ln -f .cn3d.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.cn3d.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/cn3d' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/cn3d' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C cdd -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/cdd' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cdd && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh cdd all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/seqalign.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cn3d/cn3d.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cdd' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cdd' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cdd' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cdd' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cdd TMPL=cdd -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/cdd' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/cdd' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cdd TMPL=cdd -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=cdd MODULE_PATH=objects/cdd MODULE_ASN=cdd.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seqalign/seqalign objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/scoremat/scoremat' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/seqalign.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cn3d/cn3d.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/scoremat/scoremat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seqalign/seqalign.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/scoremat/scoremat.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cdd' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cdd' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cdd/Algorithm_type_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cdd/cdd___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cdd/Algorithm_type_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cdd/cdd___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/cdd' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cdd/cdd___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cdd/cdd__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cdd/cdd__.cpp -o cdd__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cdd/cdd___.cpp -o cdd___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libcdd.so .libcdd.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libcdd.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC cdd__.o cdd___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lcn3d -lscoremat -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libcdd.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libcdd.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libcdd.so ln -f .cdd.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.cdd.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/cdd' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/cdd' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C ncbimime -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/ncbimime' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime/test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime/test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime/test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/ncbimime/test/Makefile cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh ncbimime all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cn3d/cn3d.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime TMPL=ncbimime -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/ncbimime' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/ncbimime' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime TMPL=ncbimime -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=ncbimime MODULE_PATH=objects/ncbimime MODULE_ASN=ncbimime.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqfeat/seqfeat objects/mmdb1/mmdb1 objects/mmdb2/mmdb2 objects/mmdb3/mmdb3 objects/cn3d/cn3d objects/cdd/cdd' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biblio/biblio.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/medline/medline.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb1/mmdb1.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb2/mmdb2.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mmdb3/mmdb3.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cn3d/cn3d.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/cdd/cdd.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/mmdb1/mmdb1.asn objects/mmdb2/mmdb2.asn objects/mmdb3/mmdb3.asn objects/cn3d/cn3d.asn objects/cdd/cdd.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime/Biostruc_align_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime/ncbimime___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime/Biostruc_align_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime/ncbimime___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/ncbimime' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime/ncbimime___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime/ncbimime__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime/ncbimime__.cpp -o ncbimime__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/ncbimime/ncbimime___.cpp -o ncbimime___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libncbimime.so .libncbimime.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libncbimime.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC ncbimime__.o ncbimime___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libncbimime.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libncbimime.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libncbimime.so ln -f .ncbimime.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.ncbimime.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/ncbimime' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C test -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/ncbimime/test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/ncbimime/test' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/ncbimime' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C pcsubstance -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/pcsubstance' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh pcsubstance all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/pcsubstance' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/pcsubstance' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance TMPL=pcsubstance -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=pcsubstance MODULE_PATH=objects/pcsubstance MODULE_ASN=pcsubstance.asn MODULE_IMPORT='objects/general/general objects/pub/pub' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance/PC_AtomInt_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance/PC_AtomInt_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/pcsubstance' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance/pcsubstance__.cpp -o pcsubstance__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance/pcsubstance___.cpp -o pcsubstance___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libpcsubstance.so .libpcsubstance.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libpcsubstance.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC pcsubstance__.o pcsubstance___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libpcsubstance.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libpcsubstance.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libpcsubstance.so ln -f .pcsubstance.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.pcsubstance.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/pcsubstance' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/pcsubstance' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C pcassay -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/pcassay' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcassay && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh pcassay all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcassay' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcassay' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcassay' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcassay' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcassay TMPL=pcassay -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/pcassay' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/pcassay' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcassay TMPL=pcassay -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=pcassay MODULE_PATH=objects/pcassay MODULE_ASN=pcassay.asn MODULE_IMPORT='objects/general/general objects/pub/pub objects/seqfeat/seqfeat objects/pcsubstance/pcsubstance' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcsubstance/pcsubstance.asn' IMPFILES='objects/general/general.asn objects/pub/pub.asn objects/seqfeat/seqfeat.asn objects/pcsubstance/pcsubstance.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcassay' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcassay' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcassay/PC_AnnotatedXRef_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcassay/pcassay___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcassay/PC_AnnotatedXRef_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcassay/pcassay___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcassay/PC_AssayTargetInfo_.cpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcassay/pcassay___.cpp:12: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcassay/PC_AnnotatedXRef_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcassay/pcassay___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcassay/PC_AssayTargetInfo_.cpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcassay/pcassay___.cpp:12: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcassay/PC_AnnotatedXRef_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcassay/pcassay___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/pcassay' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcassay/pcassay___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcassay/pcassay__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcassay/pcassay__.cpp -o pcassay__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pcassay/pcassay___.cpp -o pcassay___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libpcassay.so .libpcassay.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libpcassay.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC pcassay__.o pcassay___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libpcassay.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libpcassay.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libpcassay.so ln -f .pcassay.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.pcassay.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/pcassay' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/pcassay' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C gbseq -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/gbseq' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbseq && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh gbseq all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbseq' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbseq' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbseq' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbseq' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbseq TMPL=gbseq -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/gbseq' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/gbseq' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbseq TMPL=gbseq -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbseq' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbseq' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbseq/GBAltSeqData_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbseq/gbseq___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbseq/GBAltSeqData_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbseq/gbseq___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/gbseq' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbseq/gbseq___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbseq/gbseq__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libgbseq.so .libgbseq.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libgbseq.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC gbseq__.o gbseq___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libgbseq.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libgbseq.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libgbseq.so ln -f .gbseq.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.gbseq.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/gbseq' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/gbseq' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C insdseq -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/insdseq' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/insdseq && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh insdseq all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/insdseq' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/insdseq' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/insdseq' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/insdseq' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/insdseq TMPL=insdseq -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/insdseq' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/insdseq' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/insdseq TMPL=insdseq -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=insdseq MODULE_PATH=objects/insdseq MODULE_ASN=insdseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/insdseq' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/insdseq' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/insdseq/INSDAltSeqData_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/insdseq/insdseq___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/insdseq/INSDAltSeqData_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/insdseq/insdseq___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/insdseq' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/insdseq/insdseq___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/insdseq/insdseq__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/insdseq/insdseq__.cpp -o insdseq__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/insdseq/insdseq___.cpp -o insdseq___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libinsdseq.so .libinsdseq.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libinsdseq.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC insdseq__.o insdseq___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libinsdseq.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libinsdseq.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libinsdseq.so ln -f .insdseq.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.insdseq.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/insdseq' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/insdseq' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C tinyseq -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/tinyseq' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/tinyseq && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh tinyseq all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/tinyseq' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/tinyseq' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/tinyseq' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/tinyseq' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/tinyseq TMPL=tinyseq -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/tinyseq' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/tinyseq' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/tinyseq TMPL=tinyseq -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=tinyseq MODULE_PATH=objects/tinyseq MODULE_ASN=tinyseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/tinyseq' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/tinyseq' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/tinyseq/TSeq_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/tinyseq/tinyseq___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/tinyseq/TSeq_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/tinyseq/tinyseq___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/tinyseq' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/tinyseq/tinyseq___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/tinyseq/tinyseq__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/tinyseq/tinyseq__.cpp -o tinyseq__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/tinyseq/tinyseq___.cpp -o tinyseq___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libtinyseq.so .libtinyseq.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libtinyseq.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC tinyseq__.o tinyseq___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libtinyseq.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libtinyseq.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libtinyseq.so ln -f .tinyseq.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.tinyseq.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/tinyseq' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/tinyseq' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C biotree -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/biotree' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biotree && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh biotree all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biotree' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biotree' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biotree' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biotree' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biotree TMPL=biotree -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/biotree' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/biotree' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biotree TMPL=biotree -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=biotree MODULE_PATH=objects/biotree MODULE_ASN=biotree.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biotree' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biotree' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biotree/BioTreeContainer_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biotree/biotree___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biotree/BioTreeContainer_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biotree/biotree___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/biotree' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biotree/biotree___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biotree/biotree__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biotree/biotree__.cpp -o biotree__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/biotree/biotree___.cpp -o biotree___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libbiotree.so .libbiotree.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libbiotree.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC biotree__.o biotree___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libbiotree.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libbiotree.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libbiotree.so ln -f .biotree.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.biotree.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/biotree' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/biotree' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C entrezgene -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/entrezgene' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh entrezgene all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene TMPL=entrezgene -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/entrezgene' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/entrezgene' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene TMPL=entrezgene -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=entrezgene MODULE_PATH=objects/entrezgene MODULE_ASN=entrezgene.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene/Entrezgene_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene/Entrezgene_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene/Entrezgene_.cpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene/Entrezgene_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene/Entrezgene_.cpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene/Entrezgene_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/entrezgene' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene/entrezgene__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene/entrezgene__.cpp -o entrezgene__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/entrezgene/entrezgene___.cpp -o entrezgene___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libentrezgene.so .libentrezgene.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libentrezgene.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC entrezgene__.o entrezgene___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libentrezgene.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libentrezgene.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libentrezgene.so ln -f .entrezgene.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.entrezgene.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/entrezgene' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/entrezgene' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C omssa -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/omssa' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/omssa && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh omssa all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/omssa' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/omssa' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/omssa' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/omssa' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/omssa TMPL=omssa -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/omssa' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/omssa' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/omssa TMPL=omssa -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=omssa MODULE_PATH=objects/omssa MODULE_ASN=omssa.asn MODULE_IMPORT='objects/seq/seq' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seq/seq.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/omssa' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/omssa' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/omssa/MSBioseq_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/omssa/omssa___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/omssa/MSBioseq_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/omssa/omssa___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/omssa' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/omssa/omssa___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/omssa/omssa__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/omssa/omssa__.cpp -o omssa__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/omssa/omssa___.cpp -o omssa___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libomssa.so .libomssa.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libomssa.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC omssa__.o omssa___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lseq -lseqcode -lsequtil -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libomssa.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libomssa.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libomssa.so ln -f .omssa.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.omssa.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/omssa' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/omssa' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C remap -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/remap' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/remap' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/remap && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh remap all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/remap' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/remap' make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/remap' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/remap' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/remap TMPL=remap -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/remap' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/remap' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/remap TMPL=remapcli -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/remap' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/remap' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/remap TMPL=remap -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=remap MODULE_PATH=objects/remap MODULE_ASN=remap.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/remap' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/remap' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/remap/RMReply_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/remap/remap___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/remap/RMReply_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/remap/remap___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/remap' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/remap/remap___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/remap/remap__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/remap/remap__.cpp -o remap__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/remap/remap___.cpp -o remap___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libremap.so .libremap.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libremap.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC remap__.o remap___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libremap.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libremap.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libremap.so ln -f .remap.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.remap.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/remap' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/remap TMPL=remapcli -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/remap/remap_client_.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/remap/remap_client_.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/remap' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/remap/remap_client_.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/remap/remap_client.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/remap/remap_client.cpp -o remap_client.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/remap/remap_client_.cpp -o remap_client_.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libremapcli.so .libremapcli.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libremapcli.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC remap_client.o remap_client_.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libremapcli.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libremapcli.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libremapcli.so ln -f .remapcli.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.remapcli.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/remap' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/remap' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/remap' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C seqtest -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqtest' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtest && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh seqtest all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/seqalign.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtest' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtest' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtest' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtest' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtest TMPL=seqtest -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqtest' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqtest' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtest TMPL=seqtest -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=seqtest MODULE_PATH=objects/seqtest MODULE_ASN=seqtest.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/seqalign.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtest' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtest' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtest/SeqTestResults_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtest/seqtest___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtest/SeqTestResults_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtest/seqtest___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqtest' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtest/seqtest___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtest/seqtest__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtest/seqtest__.cpp -o seqtest__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqtest/seqtest___.cpp -o seqtest___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libseqtest.so .libseqtest.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libseqtest.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC seqtest__.o seqtest___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libseqtest.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libseqtest.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libseqtest.so ln -f .seqtest.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.seqtest.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqtest' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/seqtest' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C taxon1 -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/taxon1' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/taxon1' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1 && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh taxon1 all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1' make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1 TMPL=taxon1 -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/taxon1' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/taxon1' make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/taxon1' make[5]: *** No rule to make target '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/SQLITE3.enabled', needed by 'requirements'. Stop. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/taxon1' NOTE: skipping project "local_taxon" due to unmet requirements make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/taxon1' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/taxon1' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1 TMPL=taxon1 -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/Taxon1_data_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/Taxon1_data_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1.cpp: In member function ‘bool ncbi::objects::CTaxon1::Init(const STimeout*, unsigned int, unsigned int)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1.cpp:141:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 141 | auto_ptr pServer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1.cpp:142:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 142 | auto_ptr pOut; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1.cpp:143:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 143 | auto_ptr pIn; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1.cpp: In member function ‘bool ncbi::objects::CTaxon1::SendRequest(ncbi::objects::CTaxon1_req&, ncbi::objects::CTaxon1_resp&, bool)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1.cpp:1484:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1484 | auto_ptr pOut; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1.cpp:1485:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1485 | auto_ptr pIn; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1.cpp:1486:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1486 | auto_ptr | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/cache.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialdef.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/typeref.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serial.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/cache.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/cache.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialdef.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/typeref.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serial.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/cache.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/cache.cpp: In member function ‘void ncbi::objects::CDomainStorage::AddField(int, int, const string&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/cache.cpp:787:24: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 787 | if( m_types.size() <= field_no ) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/utils.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/utils.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/utils.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/utils.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/ctreecont.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/ctreecont.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/ctreecont.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/ctreecont.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/ctreecont.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/ctreecont.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/ctreecont.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/ctreecont.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/taxon1' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/ctreecont.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/utils.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/cache.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/cache.cpp -o cache.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/utils.cpp -o utils.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libtaxon1.so .libtaxon1.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libtaxon1.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxconnect -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libtaxon1.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libtaxon1.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libtaxon1.so ln -f .taxon1.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.taxon1.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/taxon1' make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/taxon1' make[5]: *** No rule to make target '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/SQLITE3.enabled', needed by 'requirements'. Stop. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/taxon1' NOTE: skipping project "local_taxon" due to unmet requirements make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/taxon1' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/taxon1' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/taxon1' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/taxon1' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C taxon3 -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/taxon3' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3 && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh taxon3 all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3 TMPL=taxon3 -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/taxon3' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/taxon3' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3 TMPL=taxon3 -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/itaxon3.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/T3Data.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/T3Data.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3__.cpp:3: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/SequenceOfInt_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/SequenceOfInt.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/SequenceOfInt.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3__.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/itaxon3.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/T3Data.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/T3Data.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3__.cpp:3: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/SequenceOfInt_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/SequenceOfInt.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/SequenceOfInt.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3__.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/SequenceOfInt_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/SequenceOfInt_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/itaxon3.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/T3Data.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/T3Data_.cpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3___.cpp:3: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/SequenceOfInt_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/itaxon3.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/T3Data.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/T3Data_.cpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3___.cpp:3: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/SequenceOfInt_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/itaxon3.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/taxon3.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/itaxon3.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/taxon3.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3.cpp: In member function ‘virtual ncbi::CRef ncbi::objects::CTaxon3::SendRequest(const ncbi::objects::CTaxon3_request&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3.cpp:116:25: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 116 | auto_ptr pOut; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3.cpp:117:25: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr pIn; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3.cpp:118:25: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 118 | auto_ptr | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/taxon3' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libtaxon3.so .libtaxon3.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libtaxon3.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC taxon3__.o taxon3___.o taxon3.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxconnect -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libtaxon3.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libtaxon3.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libtaxon3.so ln -f .taxon3.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.taxon3.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/taxon3' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/taxon3' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C gbproj -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/gbproj' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh gbproj all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/submit/submit.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj TMPL=gbproj -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/gbproj' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/gbproj' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj TMPL=gbproj -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/gbproj__.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/AbstractProjectItem.cpp: In member function ‘void ncbi::objects::CAbstractProjectItem::PreWrite() const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/AbstractProjectItem.cpp:113:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 113 | auto_ptr os | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/gbproj/AbstractProjectItem_.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/gbproj/AbstractProjectItem.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/AbstractProjectItem.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/gbproj__.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/gbproj__.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/AbstractProjectItem.cpp: In member function ‘void ncbi::objects::CAbstractProjectItem::PostRead()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/AbstractProjectItem.cpp:146:21: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 146 | auto_ptr is | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/gbproj/AbstractProjectItem_.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/gbproj/AbstractProjectItem.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/AbstractProjectItem.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/gbproj__.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/gbproj__.cpp:9: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/ProjectFolder.cpp: In member function ‘void ncbi::objects::CProjectFolder::RemoveAllChildItems()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/ProjectFolder.cpp:310:27: warning: unused variable ‘item’ [-Wunused-variable] 310 | CProjectItem& item = **it; | ^~~~ /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=gbproj MODULE_PATH=objects/gbproj MODULE_ASN=gbproj.asn MODULE_IMPORT='objects/seq/seq objects/seqloc/seqloc objects/seqset/seqset objects/general/general objects/submit/submit objects/seqalign/seqalign' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqset/seqset.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/submit/submit.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/seq/seq.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/general/general.asn objects/submit/submit.asn objects/seqalign/seqalign.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/AbstractProjectItem_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/gbproj___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/AbstractProjectItem_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/gbproj___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/gbproj' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/gbproj___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/gbproj__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/gbproj__.cpp -o gbproj__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/gbproj/gbproj___.cpp -o gbproj___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libgbproj.a .libgbproj.a.stamp ar cr libgbproj.a gbproj__.o gbproj___.o /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libgbproj.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libgbproj.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libgbproj.a ln -f .gbproj.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.gbproj.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/gbproj' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/gbproj' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C trackmgr -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/trackmgr' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/trackmgr' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh trackmgr all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr' make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr TMPL=trackmgr -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/trackmgr' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/trackmgr' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/trackmgr' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/trackmgr' make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/trackmgr' make[5]: *** No rule to make target '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/LZO.enabled', needed by 'requirements'. Stop. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/trackmgr' NOTE: skipping project "trackmgrgridcli" due to unmet requirements make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/trackmgr' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/trackmgr' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr TMPL=trackmgr -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=trackmgr MODULE_PATH=objects/trackmgr MODULE_ASN=trackmgr.asn MODULE_IMPORT='objects/seqloc/seqloc objects/general/general' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/seqloc/seqloc.asn objects/general/general.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/TMgr_ACL_AccessLevel_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/trackmgr___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/TMgr_ACL_AccessLevel_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/trackmgr___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/trackmgr' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/trackmgr___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/trackmgr__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/trackmgr__.cpp -o trackmgr__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/trackmgr___.cpp -o trackmgr___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libtrackmgr.a .libtrackmgr.a.stamp ar cr libtrackmgr.a trackmgr__.o trackmgr___.o /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libtrackmgr.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libtrackmgr.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libtrackmgr.a ln -f .trackmgr.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.trackmgr.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/trackmgr' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr TMPL=trackmgrcli -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/trackmgr_client.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/trackmgr_client.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/trackmgr_client.cpp: In member function ‘void ncbi::objects::CTrackMgrClient::x_Init()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/trackmgr_client.cpp:73:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 73 | auto_ptr to(new STimeout()); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/trackmgr_client.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/trackmgr' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/trackmgr_client.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/trackmgr_client.cpp -o trackmgr_client.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/trackmgr_client_.cpp -o trackmgr_client_.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libtrackmgrcli.a .libtrackmgrcli.a.stamp ar cr libtrackmgrcli.a trackmgr_client.o trackmgr_client_.o /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libtrackmgrcli.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libtrackmgrcli.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libtrackmgrcli.a ln -f .trackmgrcli.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.trackmgrcli.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/trackmgr' make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/trackmgr' make[5]: *** No rule to make target '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/LZO.enabled', needed by 'requirements'. Stop. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/trackmgr' NOTE: skipping project "trackmgrgridcli" due to unmet requirements make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/trackmgr' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/trackmgr' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/trackmgr' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/trackmgr' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C valerr -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/valerr' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valerr && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh valerr all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valerr' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valerr' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valerr' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valerr' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valerr TMPL=valerr -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/valerr' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/valerr' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valerr TMPL=valerr -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=valerr MODULE_PATH=objects/valerr MODULE_ASN=valerr.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valerr' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valerr' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valerr/ValidErrItem_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valerr/valerr___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valerr/ValidErrItem_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valerr/valerr___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/valerr' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valerr/valerr___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valerr/valerr__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valerr/valerr__.cpp -o valerr__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valerr/valerr___.cpp -o valerr___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libvalerr.so .libvalerr.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libvalerr.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC valerr__.o valerr___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libvalerr.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libvalerr.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libvalerr.so ln -f .valerr.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.valerr.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/valerr' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/valerr' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C valid -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/valid' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh valid all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid TMPL=valid -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/valid' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/valid' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid TMPL=valid -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid/Comment_set.cpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid/valid__.cpp:3: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/error_codes.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/static_set.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid/Comment_rule.cpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid/valid__.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid/valid__.cpp:3: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid/Comment_set.cpp: In function ‘void ncbi::objects::s_InitializeStructuredCommentRules()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid/Comment_set.cpp:118:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 118 | auto_ptr in; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/error_codes.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/static_set.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid/Comment_rule.cpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid/valid__.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid/Comment_rule_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid/valid___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid/Comment_rule_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid/valid___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/valid' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid/valid___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid/valid__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid/valid__.cpp -o valid__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/valid/valid___.cpp -o valid___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libvalid.so .libvalid.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libvalid.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC valid__.o valid___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxregexp -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libvalid.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libvalid.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libvalid.so ln -f .valid.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.valid.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/valid' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/valid' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C access -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/access' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/access && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh access all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/access' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/access' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/access' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/access' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/access TMPL=access -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/access' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/access' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/access TMPL=access -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=access MODULE_PATH=objects/access MODULE_ASN=access.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/access' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/access' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/access/Link_set_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/access/access___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/access/Link_set_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/access/access___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/access' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/access/access___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/access/access__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/access/access__.cpp -o access__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/access/access___.cpp -o access___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libaccess.so .libaccess.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libaccess.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC access__.o access___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libaccess.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libaccess.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libaccess.so ln -f .access.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.access.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/access' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/access' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C docsum -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/docsum' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/docsum && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh docsum all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/docsum' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/docsum' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/docsum' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/docsum' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/docsum TMPL=docsum -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/docsum' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/docsum' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/docsum TMPL=docsum -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=docsum MODULE_PATH=objects/docsum MODULE_ASN=docsum.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/docsum' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/docsum' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/docsum/Assay_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/docsum/docsum___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/docsum/Assay_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/docsum/docsum___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/docsum' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/docsum/docsum___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/docsum/docsum__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/docsum/docsum__.cpp -o docsum__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/docsum/docsum___.cpp -o docsum___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libdocsum.so .libdocsum.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libdocsum.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC docsum__.o docsum___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libdocsum.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libdocsum.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libdocsum.so ln -f .docsum.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.docsum.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/docsum' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/docsum' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C featdef -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/featdef' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/featdef && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh featdef all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/featdef' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/featdef' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/featdef' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/featdef' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/featdef TMPL=featdef -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/featdef' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/featdef' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/featdef TMPL=featdef -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=featdef MODULE_PATH=objects/featdef MODULE_ASN=featdef.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/featdef' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/featdef' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/featdef/FeatDef_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/featdef/featdef___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/featdef/FeatDef_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/featdef/featdef___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/featdef' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/featdef/featdef___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/featdef/featdef__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/featdef/featdef__.cpp -o featdef__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/featdef/featdef___.cpp -o featdef___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libfeatdef.so .libfeatdef.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libfeatdef.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC featdef__.o featdef___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libfeatdef.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libfeatdef.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libfeatdef.so ln -f .featdef.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.featdef.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/featdef' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/featdef' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C genomecoll -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/genomecoll' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/genomecoll' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh genome_collection all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll' make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh gencoll_client all Waiting for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/make_asn.lock/gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll' . Acquired /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/make_asn.lock for PID 39089 (make_asn) /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll' make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll TMPL=genome_collection -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/genomecoll' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/genomecoll' make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/genomecoll' make[5]: *** No rule to make target '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/SQLITE3.enabled', needed by 'requirements'. Stop. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/genomecoll' NOTE: skipping project "gencoll_client" due to unmet requirements make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/genomecoll' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/genomecoll' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll TMPL=genome_collection -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/GC_Assembly.cpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/genome_collection__.cpp:3: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/genomecoll/GC_Assemblies_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/genomecoll/GC_Assemblies.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/GC_Assemblies.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/genome_collection__.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/GC_Assembly.cpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/genome_collection__.cpp:3: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/genomecoll/GC_Assemblies_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/genomecoll/GC_Assemblies.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/GC_Assemblies.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/genome_collection__.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \ datatool: 2.20.1 make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/genome_collection___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/genome_collection___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/genomecoll' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/genome_collection___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/genome_collection__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libgenome_collection.so .libgenome_collection.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libgenome_collection.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC genome_collection__.o genome_collection___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libgenome_collection.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libgenome_collection.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libgenome_collection.so ln -f .genome_collection.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.genome_collection.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/genomecoll' make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/genomecoll' make[5]: *** No rule to make target '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/SQLITE3.enabled', needed by 'requirements'. Stop. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/genomecoll' NOTE: skipping project "gencoll_client" due to unmet requirements make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/genomecoll' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/genomecoll' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/genomecoll' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C gc_cli -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/genomecoll/gc_cli' make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/genomecoll/gc_cli' make[5]: *** No rule to make target '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/SQLITE3.enabled', needed by 'requirements'. Stop. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/genomecoll/gc_cli' NOTE: skipping project "gc_cli" due to unmet requirements make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/genomecoll/gc_cli' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/genomecoll' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C homologene -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/homologene' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/homologene && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh homologene all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/seqalign.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/homologene' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/homologene' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/homologene' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/homologene' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/homologene TMPL=homologene -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/homologene' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/homologene' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/homologene TMPL=homologene -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=homologene MODULE_PATH=objects/homologene MODULE_ASN=homologene.asn MODULE_IMPORT='objects/general/general objects/seqalign/seqalign objects/seqloc/seqloc' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqalign/seqalign.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seqalign/seqalign.asn objects/seqloc/seqloc.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/homologene' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/homologene' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/homologene/HG_Alignment_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/homologene/homologene___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/homologene/HG_Alignment_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/homologene/homologene___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/homologene' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/homologene/homologene___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/homologene/homologene__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/homologene/homologene__.cpp -o homologene__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/homologene/homologene___.cpp -o homologene___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libhomologene.so .libhomologene.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libhomologene.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC homologene__.o homologene___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libhomologene.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libhomologene.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libhomologene.so ln -f .homologene.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.homologene.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/homologene' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/homologene' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C mim -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mim' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mim && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh mim all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mim' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mim' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mim' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mim' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mim TMPL=mim -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mim' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mim' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mim TMPL=mim -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=mim MODULE_PATH=objects/mim MODULE_ASN=mim.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mim' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mim' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mim/Mim_allelic_variant_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mim/mim___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mim/Mim_allelic_variant_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mim/mim___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mim' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mim/mim___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mim/mim__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mim/mim__.cpp -o mim__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/mim/mim___.cpp -o mim___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libmim.so .libmim.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libmim.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC mim__.o mim___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libmim.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libmim.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libmim.so ln -f .mim.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.mim.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mim' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/mim' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C objprt -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/objprt' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/objprt && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh objprt all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/objprt' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/objprt' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/objprt' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/objprt' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/objprt TMPL=objprt -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/objprt' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/objprt' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/objprt TMPL=objprt -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=objprt MODULE_PATH=objects/objprt MODULE_ASN=objprt.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/objprt' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/objprt' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/objprt/PrintForm_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/objprt/objprt___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/objprt/PrintForm_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/objprt/objprt___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/objprt' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/objprt/objprt___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/objprt/objprt__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/objprt/objprt__.cpp -o objprt__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/objprt/objprt___.cpp -o objprt___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libobjprt.so .libobjprt.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libobjprt.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC objprt__.o objprt___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libobjprt.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libobjprt.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libobjprt.so ln -f .objprt.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.objprt.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/objprt' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/objprt' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C variation -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/variation' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh variation all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ -oc variation -or objects/variation -odi -od variation.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ datatool: 2.20.1 make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation TMPL=variation -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/variation' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/variation' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation TMPL=variation -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqfeat/seqfeat.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seqloc/seqloc.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/pub/pub.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ -oc variation -or objects/variation -odi -od variation.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ datatool: 2.20.1 make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation/VariantPlacement_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation/variation___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation/VariantPlacement_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation/variation___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation/Variation_.cpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation/variation___.cpp:3: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation/VariantPlacement_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation/variation___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation/Variation_.cpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation/variation___.cpp:3: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation/VariantPlacement_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation/variation___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/variation' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation/variation___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation/variation__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation/variation__.cpp -o variation__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation/variation___.cpp -o variation___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libvariation.so .libvariation.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libvariation.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC variation__.o variation___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libvariation.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libvariation.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libvariation.so ln -f .variation.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.variation.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/variation' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/variation' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C macro -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/macro' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/unit_test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/unit_test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/unit_test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build unit_test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/macro/unit_test/Makefile cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh macro all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro TMPL=macro -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/macro' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/macro' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro TMPL=macro -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro__.cpp:129: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/Replace_func.cpp: In function ‘bool ncbi::objects::s_WholeWordReplaceNocase(std::string&, const string&, const string&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/Replace_func.cpp:61:28: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] 61 | size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro__.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:5308:11: note: declared here 5308 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, | ^~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro__.cpp:129: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/Replace_func.cpp:74:29: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] 74 | pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro__.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:5308:11: note: declared here 5308 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, | ^~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro__.cpp:129: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/Replace_func.cpp:76:29: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] 76 | pos = NStr::Find(val, find, pos + 1, string::npos, NStr::eFirst, NStr::eNocase); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro__.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:5308:11: note: declared here 5308 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, | ^~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro__.cpp:129: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/Replace_func.cpp: In function ‘bool ncbi::objects::s_ReplaceNocase(std::string&, const string&, const string&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/Replace_func.cpp:88:28: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] 88 | size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro__.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:5308:11: note: declared here 5308 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, | ^~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro__.cpp:129: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/Replace_func.cpp:99:25: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] 99 | pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro__.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:5308:11: note: declared here 5308 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, | ^~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/macro/Source_qual_choice.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/Source_qual_choice.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro__.cpp:151: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp: At global scope: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro__.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/macro/Source_qual_choice.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/Source_qual_choice.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro__.cpp:151: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro__.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/Suspect_rule_set.cpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro__.cpp:164: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro__.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro__.cpp:158: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/String_constraint.cpp: In member function ‘ncbi::CTempString ncbi::objects::CString_constraint::x_GetConstraintString(ncbi::objects::CString_constraint::ECase) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/String_constraint.cpp:479:1: warning: control reaches end of non-void function [-Wreturn-type] 479 | } | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/String_constraint.cpp: In member function ‘ncbi::CTempString ncbi::objects::CString_constraint::x_GetCompareString(const ncbi::objects::CMatchString&, ncbi::objects::CString_constraint::ECase) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/String_constraint.cpp:513:1: warning: control reaches end of non-void function [-Wreturn-type] 513 | } | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/AECRParse_action_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/AECRParse_action_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/macro/Source_qual_choice.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/Field_type_.cpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro___.cpp:61: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/AECRParse_action_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/macro/Source_qual_choice.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/Field_type_.cpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro___.cpp:61: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/AECRParse_action_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/macro' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro__.cpp -o macro__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/macro/macro___.cpp -o macro___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libmacro.so .libmacro.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libmacro.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC macro__.o macro___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lseq -lseqcode -lsequtil -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libmacro.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libmacro.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libmacro.so ln -f .macro.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.macro.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/macro' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C unit_test -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/macro/unit_test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/macro/unit_test' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/macro' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C genesbyloc -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/genesbyloc' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh genesbyloc all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/genesbyloc' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/genesbyloc' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc TMPL=genesbyloc -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=genesbyloc MODULE_PATH=objects/genesbyloc MODULE_ASN=genesbyloc.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc/GBL_Data_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc/GBL_Data_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/genesbyloc' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc/genesbyloc__.cpp -o genesbyloc__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/genesbyloc/genesbyloc___.cpp -o genesbyloc___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libgenesbyloc.so .libgenesbyloc.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libgenesbyloc.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC genesbyloc__.o genesbyloc___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libgenesbyloc.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libgenesbyloc.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libgenesbyloc.so ln -f .genesbyloc.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.genesbyloc.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/genesbyloc' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/genesbyloc' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C coords -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/coords' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/coords && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh objcoords all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/coords' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m objcoords.asn -M "" -oA \ -oc objcoords -or objects/coords -odi -od objcoords.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump \ datatool: 2.20.1 make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/coords' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/coords' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/coords' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/coords TMPL=objcoords -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/coords' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/coords' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/coords TMPL=objcoords -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=objcoords MODULE_PATH=objects/coords MODULE_ASN=objcoords.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/coords' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m objcoords.asn -M "" -oA \ -oc objcoords -or objects/coords -odi -od objcoords.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd objcoords.dump \ datatool: 2.20.1 make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/coords' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/coords/HGVS_Coordinate_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/coords/objcoords___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/coords/HGVS_Coordinate_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/coords/objcoords___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/coords' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/coords/objcoords___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/coords/objcoords__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/coords/objcoords__.cpp -o objcoords__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/coords/objcoords___.cpp -o objcoords___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libobjcoords.so .libobjcoords.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libobjcoords.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC objcoords__.o objcoords___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libobjcoords.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libobjcoords.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libobjcoords.so ln -f .objcoords.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.objcoords.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/coords' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/coords' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C varrep -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/varrep' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/varrep && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh varrep all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=varrep MODULE_PATH=objects/varrep MODULE_ASN=varrep.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/varrep' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m varrep.asn -M "" -oA \ -oc varrep -or objects/varrep -odi -od varrep.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd varrep.dump \ datatool: 2.20.1 make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/varrep' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/varrep' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/varrep' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/varrep TMPL=varrep -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/varrep' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/varrep' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/varrep TMPL=varrep -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=varrep MODULE_PATH=objects/varrep MODULE_ASN=varrep.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/varrep' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m varrep.asn -M "" -oA \ -oc varrep -or objects/varrep -odi -od varrep.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd varrep.dump \ datatool: 2.20.1 make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/varrep' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/varrep/AaInterval_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/varrep/varrep___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/varrep/AaInterval_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/varrep/varrep___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/varrep' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/varrep/varrep___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/varrep/varrep__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/varrep/varrep__.cpp -o varrep__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/varrep/varrep___.cpp -o varrep___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libvarrep.so .libvarrep.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libvarrep.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC varrep__.o varrep___.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libvarrep.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libvarrep.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libvarrep.so ln -f .varrep.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.varrep.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/varrep' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/varrep' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C variation_libs -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/variation_libs' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C dbsnp -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/variation_libs/dbsnp' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C search_by_rsid -w all_r || exit 5 make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/variation_libs/dbsnp/search_by_rsid' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh search_by_rsid all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=search_by_rsid MODULE_PATH=objects/variation_libs/dbsnp/search_by_rsid MODULE_ASN=search_by_rsid.asn MODULE_IMPORT='objects/trackmgr/trackmgr objects/general/general' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/trackmgr.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/trackmgr/trackmgr.asn objects/general/general.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m search_by_rsid.asn -M "objects/trackmgr/trackmgr.asn objects/general/general.asn" -oA \ -oc search_by_rsid -or objects/variation_libs/dbsnp/search_by_rsid -odi -od search_by_rsid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd search_by_rsid.dump \ datatool: 2.20.1 make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -w export-headers make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/variation_libs/dbsnp/search_by_rsid' make[6]: Nothing to be done for 'export-headers'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/variation_libs/dbsnp/search_by_rsid' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid TMPL=search_by_rsid -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=search_by_rsid MODULE_PATH=objects/variation_libs/dbsnp/search_by_rsid MODULE_ASN=search_by_rsid.asn MODULE_IMPORT='objects/trackmgr/trackmgr objects/general/general' IMPDEPS='/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/trackmgr/trackmgr.asn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/general/general.asn' IMPFILES='objects/trackmgr/trackmgr.asn objects/general/general.asn' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m search_by_rsid.asn -M "objects/trackmgr/trackmgr.asn objects/general/general.asn" -oA \ -oc search_by_rsid -or objects/variation_libs/dbsnp/search_by_rsid -odi -od search_by_rsid.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd search_by_rsid.dump \ datatool: 2.20.1 make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/Error_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/Error_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/variation_libs/dbsnp/search_by_rsid' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid__.cpp -o search_by_rsid__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/search_by_rsid/search_by_rsid___.cpp -o search_by_rsid___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libsearchbyrsid.a .libsearchbyrsid.a.stamp ar cr libsearchbyrsid.a search_by_rsid__.o search_by_rsid___.o /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libsearchbyrsid.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libsearchbyrsid.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libsearchbyrsid.a ln -f .searchbyrsid.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.searchbyrsid.dep make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/variation_libs/dbsnp/search_by_rsid' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/variation_libs/dbsnp/search_by_rsid' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C tooltip_service -w all_r || exit 5 make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/variation_libs/dbsnp/tooltip_service' cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh dbsnp_tooltip_service all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=dbsnp_tooltip_service MODULE_PATH=objects/variation_libs/dbsnp/tooltip_service MODULE_ASN=dbsnp_tooltip_service.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m dbsnp_tooltip_service.asn -M "" -oA \ -oc dbsnp_tooltip_service -or objects/variation_libs/dbsnp/tooltip_service -odi -od dbsnp_tooltip_service.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd dbsnp_tooltip_service.dump \ datatool: 2.20.1 make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -w export-headers make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/variation_libs/dbsnp/tooltip_service' make[6]: Nothing to be done for 'export-headers'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/variation_libs/dbsnp/tooltip_service' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service TMPL=dbsnp_tooltip_service -w all /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.module MODULE=dbsnp_tooltip_service MODULE_PATH=objects/variation_libs/dbsnp/tooltip_service MODULE_ASN=dbsnp_tooltip_service.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/datatool -oR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ \ -opm /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src -m dbsnp_tooltip_service.asn -M "" -oA \ -oc dbsnp_tooltip_service -or objects/variation_libs/dbsnp/tooltip_service -odi -od dbsnp_tooltip_service.def -oex '' \ -ocvs -pch 'ncbi_pch.hpp' -fd dbsnp_tooltip_service.dump \ datatool: 2.20.1 make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service' In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp:2: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/DbsnpTooltipData_.cpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp:2: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/variation_libs/dbsnp/tooltip_service' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service__.cpp -o dbsnp_tooltip_service__.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/variation_libs/dbsnp/tooltip_service/dbsnp_tooltip_service___.cpp -o dbsnp_tooltip_service___.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libdbsnp_tooltip_service.a .libdbsnp_tooltip_service.a.stamp ar cr libdbsnp_tooltip_service.a dbsnp_tooltip_service__.o dbsnp_tooltip_service___.o /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libdbsnp_tooltip_service.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libdbsnp_tooltip_service.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libdbsnp_tooltip_service.a ln -f .dbsnp_tooltip_service.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.dbsnp_tooltip_service.dep make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/variation_libs/dbsnp/tooltip_service' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/variation_libs/dbsnp/tooltip_service' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/variation_libs/dbsnp' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/variation_libs' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C dbsnp -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/dbsnp' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C primary_track -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/dbsnp/primary_track' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/primary_track/test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/dbsnp/primary_track/test/Makefile cd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/primary_track && /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/new_module.sh --protobuf dbsnp all grep: /grpc_cpp_plugin: No such file or directory Warning: Skipping code generation for dbsnp.proto because protoc is unavailable here. File dbsnp.module not found. Using defaults... /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.protobuf MODULE=dbsnp MODULE_PATH=objects/dbsnp/primary_track MODULE_ASN=dbsnp.proto MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/no/need/for/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/primary_track' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/primary_track' make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/primary_track' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/primary_track' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/dbsnp/primary_track' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/dbsnp/primary_track' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/primary_track TMPL=dbsnp -w all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/dbsnp/primary_track' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/primary_track/dbsnp.grpc.pb.wrapper.cc. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/primary_track/dbsnp.pb.wrapper.cc. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_DBSNP_PTIS_EXPORTS -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/primary_track/dbsnp.pb.wrapper.cc -o dbsnp.pb.wrapper.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_DBSNP_PTIS_EXPORTS -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/primary_track/dbsnp.grpc.pb.wrapper.cc -o dbsnp.grpc.pb.wrapper.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_DBSNP_PTIS_EXPORTS -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/primary_track/snpptis.cpp -o snpptis.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libdbsnp_ptis.so .libdbsnp_ptis.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libdbsnp_ptis.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC dbsnp.pb.wrapper.o dbsnp.grpc.pb.wrapper.o snpptis.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libdbsnp_ptis.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libdbsnp_ptis.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libdbsnp_ptis.so ln -f .dbsnp_ptis.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.dbsnp_ptis.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/dbsnp/primary_track' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C test -w all_r || exit 5 make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/dbsnp/primary_track/test' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/dbsnp/primary_track/test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/dbsnp/primary_track' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects/dbsnp' make[2]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objects' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C objmgr -w all_r || exit 5 make[2]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objmgr' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objmgr/test/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr TMPL=objmgr -w export-headers make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objmgr' make[3]: Nothing to be done for 'export-headers'. make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objmgr' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr TMPL=objmgr -w all File dbsnp.module not found. Using defaults... /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -w -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.protobuf MODULE=dbsnp MODULE_PATH=objects/dbsnp/primary_track MODULE_ASN=dbsnp.proto MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++ builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build DATATOOL=/no/need/for/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/primary_track' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objects/dbsnp/primary_track' make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objmgr' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_id_sort.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split_parser.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/gc_assembly_parser.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_finder.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/edits_db_saver.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/edits_db_engine.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/unsupp_editsaver.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/edit_saver.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/edit_commands_impl.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_transaction_impl.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_transaction.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_assigner.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_handle.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_graph_handle.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_feat_handle.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/mapped_feat.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_loader_factory.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_collector.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_mapper.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_loc_mapper.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_type_index.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_ci.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_chunk_info.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_split_info.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seqdesc_ci.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_vector_ci.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_vector.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/object_manager.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/handle_range_map.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/objmgr_exception.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/handle_range.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_loader.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/align_ci.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_handle.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_handle.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_handle.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_handle.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_ci.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_ci.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_ci.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map_ci.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_handle.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_info.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_impl.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/heap_scope.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_actions.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_manager_impl.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_manager.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_impl.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/priority.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_source.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_info.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_info.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_base_info.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_info.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_info_object.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_info.cpp. Updating dependency information forIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_setters.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/objmgr_exception.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_setters.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_setters.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/objmgr_exception.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_setters.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_info.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_table_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_info.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_info.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_table_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_info.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_info.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_table_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_info.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_info.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_table_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_info.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_info.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_table_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_info.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_info.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_annot_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_info.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_info.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_annot_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_info.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_info.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_annot_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_info.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_info.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 154 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_annot_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_info.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_info.cpp:60: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_annot_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_info.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_info.cpp:60: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_annot_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_info.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_info.cpp:62: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_annot_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_info.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_info.cpp:62: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_annot_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_info.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_info.cpp:62: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_annot_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_info.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/table_field.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_table_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/table_field.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/table_field.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_table_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/table_field.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/table_field.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_table_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/table_field.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/table_field.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_table_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/table_field.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/table_field.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_table_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/table_field.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_ci.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_object_index.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_object.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/graph_ci.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/feat_ci.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_descr_ci.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_selector.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_loc_cvt.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_types_ci.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/snp_annot_info.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map_switch.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/table_field.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_info.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_info.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_setters.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/table_field.cpp -o table_field.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_align_mapper.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map_switch.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_map.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_map_switch.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map_switch.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_align_mapper.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map_switch.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_map.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_map_switch.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map_switch.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_align_mapper.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map_switch.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_map.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_map_switch.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map_switch.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/snp_annot_info.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/snp_annot_info.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/snp_annot_info.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 154 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/snp_annot_info.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/snp_annot_info.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/snp_annot_info.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_types_ci.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_types_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_types_ci.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_types_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_types_ci.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_types_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_types_ci.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_types_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_types_ci.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 154 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_types_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_align_mapper.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_loc_cvt.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_loc_cvt.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_loc_cvt.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_align_mapper.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_loc_cvt.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_loc_cvt.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_loc_cvt.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_align_mapper.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_loc_cvt.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_loc_cvt.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_loc_cvt.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_loc_cvt.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_loc_cvt.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_loc_cvt.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_loc_cvt.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_loc_cvt.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_loc_cvt.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_loc_cvt.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_loc_cvt.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_loc_cvt.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_selector.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_name.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_selector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_selector.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/feat_ci.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/feat_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/feat_ci.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/feat_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/feat_ci.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/feat_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/feat_ci.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/feat_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/feat_ci.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 154 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/feat_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/feat_ci.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/feat_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/graph_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/graph_ci.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/graph_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/graph_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/graph_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/graph_ci.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/graph_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/graph_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/graph_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/graph_ci.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/graph_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/graph_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_selector.cpp -o annot_selector.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/feat_ci.cpp -o feat_ci.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/graph_ci.cpp -o graph_ci.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.dIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_ci.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_ci.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_ci.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_info.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_info.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_info.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_info.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_info.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_info.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_info.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 154 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_info.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_info_object.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_info_object.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_info.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_info.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_info.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_info.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_base_info.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_base_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_base_info.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_info.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_info.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_info.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_info.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ rv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_object.cpp -o annot_object.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_ci.cpp -o annot_ci.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_info.cpp -o tse_info.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_info.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_base_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_info.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_info.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_base_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_info.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_info.cpp:57: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_base_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_info.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_info.cpp:57: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_base_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_info.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_source.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_source.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_source.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_source.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_source.cpp:71: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_source.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_source.cpp:71: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_source.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_source.cpp:71: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_source.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/priority.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/priority.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/priority.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/priority.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/priority.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/priority.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/prefetch_impl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_impl.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/prefetch_impl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_impl.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_impl.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/prefetch_impl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_impl.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_impl.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/prefetch_impl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_impl.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_impl.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/prefetch_impl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_impl.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_impl.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/prefetch_impl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_impl.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_impl.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/prefetch_impl.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_impl.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/prefetch_actions.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_actions.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/prefetch_manager.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/prefetch_actions.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_actions.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/prefetch_actions.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_actions.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/prefetch_manager.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/prefetch_actions.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_actions.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/prefetch_actions.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_actions.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/prefetch_manager.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/prefetch_actions.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_actions.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_actions.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/prefetch_manager.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/prefetch_actions.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_actions.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_actions.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/prefetch_manager.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/prefetch_actions.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_actions.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_actions.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/prefetch_manager.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/prefetch_actions.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_actions.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope.cpp:41: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope.cpp:41: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope.cpp:41: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope.cpp:41: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope.cpp:41: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope.cpp:41: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ .11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_source.cpp -o data_source.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/priority.cpp -o priority.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/prefetch_actions.cpp -o prefetch_actions.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope.cpp -o scope.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/heap_scope.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/heap_scope.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/heap_scope.cpp:41: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/heap_scope.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/heap_scope.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/heap_scope.cpp:41: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/heap_scope.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/heap_scope.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/heap_scope.cpp:41: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/heap_scope.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/heap_scope.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/heap_scope.cpp:41: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/heap_scope.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/heap_scope.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/heap_scope.cpp:41: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/heap_scope.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/heap_scope.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/heap_scope.cpp:41: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_impl.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_impl.cpp:41: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_impl.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_impl.cpp:41: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_impl.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_impl.cpp:41: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_impl.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_impl.cpp:41: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_impl.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_impl.cpp:41: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_impl.cpp:58: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_impl.cpp:41: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_info.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_info.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_info.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_info.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_info.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_info.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_info.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_info.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_info.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_info.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_info.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_info.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_info.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_handle.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/tse_handle.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_handle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_handle.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/tse_handle.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_handle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_handle.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/tse_handle.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_handle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_handle.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/tse_handle.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_handle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_handle.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/tse_handle.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_handle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_handle.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/tse_handle.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_handle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_map.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_map.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_map.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_map.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_map.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map_ci.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_map.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_map_ci.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map_ci.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map_ci.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_map.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_map_ci.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map_ci.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map_ci.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_map.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_map_ci.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map_ci.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_ci.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_entry_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_ci.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_entry_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_ci.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_entry_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_annot_ci.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_ci.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_annot_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_annot_ci.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_ci.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_annot_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_annot_ci.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_ci.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_annot_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_table_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_ci.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_table_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_table_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_ci.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_table_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_table_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_ci.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_table_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/heap_scope.cpp -o heap_scope.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_impl.cpp -o scope_impl.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_info.cpp -o scope_info.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_handle.cpp -o tse_handle.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map.cpp -o seq_map.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_map_ci.cpp -o seq_map_ci.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_ci.cpp -o seq_entry_ci.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_ci.cpp -o seq_annot_ci.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_table_ci.cpp -o seq_table_ci.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_annot_ci.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_handle.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_entry_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_handle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_annot_ci.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_handle.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_entry_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_handle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_annot_ci.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_handle.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_entry_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_handle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_handle.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_entry_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_handle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_handle.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_entry_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_handle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_handle.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_entry_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_handle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_handle.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 276 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_entry_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_handle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_handle.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_entry_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_handle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_handle.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_entry_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_handle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_handle.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_set_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_handle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_handle.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_set_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_handle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_handle.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_set_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_handle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_handle.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_set_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_handle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_handle.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_set_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_handle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_handle.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_set_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_handle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_handle.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 276 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_set_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_handle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_handle.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_set_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_handle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_handle.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_set_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_handle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_handle.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_handle.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_handle.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_handle.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_handle.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_handle.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_handle.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_handle.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_handle.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_handle.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_handle.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_handle.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_edit_commands.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_handle.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 276 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_handle.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_edit_commands.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_handle.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_handle.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_edit_commands.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_handle.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_handle.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_handle.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_annot_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_handle.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_handle.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_annot_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_handle.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_handle.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_annot_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_handle.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_handle.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_annot_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_handle.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_handle.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_annot_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_handle.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_handle.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_annot_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_handle.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_annot_edit_commands.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_handle.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 276 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_annot_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_handle.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_annot_edit_commands.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_handle.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_annot_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_handle.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_annot_edit_commands.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_handle.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_annot_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_handle.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/align_ci.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/align_ci.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/align_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/align_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/align_ci.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/align_ci.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/align_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/align_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/align_ci.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/align_ci.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/align_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/align_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_loader.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_loader.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_loader.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_loader.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_loader.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_loader.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_loader.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_loader.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_loader.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_loader.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_handle.cpp -o seq_entry_handle.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_handle.cpp -o bioseq_set_handle.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_handle.cpp -o bioseq_handle.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_annot_handle.cpp -o seq_annot_handle.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/align_ci.cpp -o align_ci.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_loader.cpp -o data_loader.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/handle_range.cpp -o handle_range.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/objmgr_exception.cpp -o objmgr_exception.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/handle_range_map.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Na_strand_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Na_strand.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/handle_range.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/handle_range_map.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/handle_range_map.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/object_manager.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/object_manager.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/object_manager.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/object_manager.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/object_manager.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/object_manager.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_vector.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_vector.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_vector.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_vector.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_vector.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_vector.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_vector.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_vector.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_vector.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_vector.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_vector_ci.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_vector_ci.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_vector_ci.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_vector_ci.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_vector_ci.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_vector_ci.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seqdesc_ci.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seqdesc.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_descr.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_descr_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seqdesc_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seqdesc_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seqdesc_ci.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seqdesc.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_descr.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_descr_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seqdesc_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seqdesc_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seqdesc_ci.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seqdesc.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_descr.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_descr_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seqdesc_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seqdesc_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/tempstr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seqdesc.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_descr.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_descr_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seqdesc_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seqdesc_ci.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seqdesc_ci.cpp: In member function ‘bool ncbi::objects::CSeqdesc_CI::x_RequestedType() const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seqdesc_ci.cpp:72:29: warning: ‘<<’ in boolean context, did you mean ‘<’? [-Wint-in-bool-context] 72 | _ASSERT(TDescTypeMask(1 << CSeqdesc::e_MaxChoice)); | ~~^~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:110:19: note: in definition of macro ‘NCBI_ALWAYS_ASSERT’ 110 | do { if ( !(expr) ) \ | ^~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:160:25: note: in expansion of macro ‘NCBI_ASSERT’ 160 | #define _ASSERT(expr) NCBI_ASSERT(expr, "") | ^~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seqdesc_ci.cpp:72:5: note: in expansion of macro ‘_ASSERT’ 72 | _ASSERT(TDescTypeMask(1 << CSeqdesc::e_MaxChoice)); | ^~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_split_info.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_split_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_split_info.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_split_info.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_split_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_split_info.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_chunk_info.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_chunk_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_chunk_info.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_chunk_info.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_chunk_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_chunk_info.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_ci.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_ci.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_ci.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_ci.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_ci.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_ci.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/handle_range_map.cpp -o handle_range_map.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/object_manager.cpp -o object_manager.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_vector.cpp -o seq_vector.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_vector_ci.cpp -o seq_vector_ci.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seqdesc_ci.cpp -o seqdesc_ci.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_split_info.cpp -o tse_split_info.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_chunk_info.cpp -o tse_chunk_info.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_ci.cpp -o bioseq_ci.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITSIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_type_index.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_type_index.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_type_index.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_type_index.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_type_index.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_type_index.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_type_index.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_type_index.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_loc_mapper.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_loc_mapper.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_loc_mapper.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_loc_mapper.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_loc_mapper.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_loc_mapper.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_loc_mapper.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_loc_mapper.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_loc_mapper.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_loc_mapper.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_loc_mapper.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_loc_mapper.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_align_mapper.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_mapper.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_align_mapper.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_mapper.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_align_mapper.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_mapper.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_align_mapper.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_mapper.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_align_mapper.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_mapper.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_align_mapper.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_mapper.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_mapper.cpp: In member function ‘virtual ncbi::objects::CSeq_align_Mapper_Base* ncbi::objects::CSeq_align_Mapper::CreateSubAlign(const ncbi::objects::CSpliced_seg&, const ncbi::objects::CSpliced_exon&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_mapper.cpp:466:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 466 | auto_ptr sub(new CSeq_align_Mapper(GetLocMapper())); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_align_mapper.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_mapper.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_collector.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_collector.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_collector.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_collector.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_collector.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_collector.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_collector.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_collector.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_collector.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_collector.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_collector.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_collector.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_collector.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 154 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_collector.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_collector.cpp:56: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_collector.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_collector.cpp:70: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_collector.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_collector.cpp:70: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_collector.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader_factory.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_loader_factory.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader_factory.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_loader_factory.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/mapped_feat.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/mapped_feat.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/mapped_feat.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/mapped_feat.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/mapped_feat.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/mapped_feat.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_feat_handle.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_feat_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_feat_handle.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_feat_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_feat_handle.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_feat_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_feat_handle.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_feat_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_feat_handle.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 154 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_feat_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_feat_handle.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_feat_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_feat_handle.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_feat_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_feat_handle.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_feat_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_annot_edit_commands.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_feat_handle.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 276 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_feat_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_annot_edit_commands.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_feat_handle.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_feat_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_annot_edit_commands.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_feat_handle.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_feat_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_graph_handle.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_graph_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_graph_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_graph_handle.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_graph_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_graph_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_graph_handle.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_graph_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_graph_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_graph_handle.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_graph_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_graph_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_graph_handle.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_graph_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_graph_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_graph_handle.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_graph_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_graph_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_annot_edit_commands.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_graph_handle.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 276 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_graph_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_graph_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_annot_edit_commands.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_graph_handle.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_graph_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_graph_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_annot_edit_commands.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_graph_handle.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_graph_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_graph_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ =64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_type_index.cpp -o annot_type_index.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_loc_mapper.cpp -o seq_loc_mapper.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_mapper.cpp -o seq_align_mapper.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_collector.cpp -o annot_collector.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/data_loader_factory.cpp -o data_loader_factory.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/mapped_feat.cpp -o mapped_feat.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_feat_handle.cpp -o seq_feat_handle.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_graph_handle.cpp -o seq_graph_handle.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -DIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_handle.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_align_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_handle.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_align_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_handle.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_align_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_handle.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_align_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_handle.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_align_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_handle.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_align_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_annot_edit_commands.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_handle.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 276 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_align_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_annot_edit_commands.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_handle.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_align_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_annot_edit_commands.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_handle.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_align_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_assigner.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_assigner.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_assigner.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info_object.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_entry_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_assigner.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_transaction.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_transaction.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_transaction.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_transaction.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_transaction.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_transaction.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_transaction.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_transaction.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_transaction.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_transaction.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_transaction.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_transaction.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_transaction_impl.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_transaction_impl.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_transaction_impl.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_transaction_impl.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_transaction_impl.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_transaction_impl.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_transaction_impl.cpp: In member function ‘virtual void ncbi::objects::CScopeTransaction_Impl::Commit()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_transaction_impl.cpp:167:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 167 | auto_ptr cmd(new CMultEditCommand); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_transaction_impl.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/edit_commands_impl.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/edit_commands_impl.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/edit_commands_impl.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/edit_commands_impl.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/edit_commands_impl.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/edit_commands_impl.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/edit_commands_impl.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 276 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/edit_commands_impl.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/edit_commands_impl.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/edit_commands_impl.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/edit_commands_impl.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/edit_commands_impl.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_edit_commands.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_edit_commands.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_edit_commands.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_edit_commands.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_edit_commands.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_edit_commands.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_edit_commands.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 276 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_edit_commands.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_edit_commands.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_edit_commands.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_edit_commands.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_edit_commands.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 276 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/priority.hpp:153:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_impl.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 276 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | auto_ptr m_Memeto; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ _REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_align_handle.cpp -o seq_align_handle.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/tse_assigner.cpp -o tse_assigner.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_transaction.cpp -o scope_transaction.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/scope_transaction_impl.cpp -o scope_transaction_impl.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/edits_db_saver.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/edits_db_saver.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/edits_db_saver.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/edits_db_saver.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/edits_db_saver.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/edits_db_saver.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_finder.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_finder.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_finder.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split_parser.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/split_parser.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split_parser.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ FILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/edit_saver.cpp -o edit_saver.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/edits_db_saver.cpp -o edits_db_saver.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/annot_finder.cpp -o annot_finder.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/gc_assembly_parser.cpp -o gc_assembly_parser.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split_parser.cpp -o split_parser.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxobjmgr.so .libxobjmgr.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxobjmgr.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxobjmgr.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxobjmgr.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxobjmgr.so ln -f .xobjmgr.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xobjmgr.dep make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objmgr' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C test -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objmgr/test' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objmgr/test' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C util -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objmgr/util' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/unit_test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/unit_test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/unit_test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build unit_test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objmgr/util/unit_test/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util TMPL=util -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objmgr/util' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objmgr/util' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util TMPL=util -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/weight.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/weight.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/weight.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/weight.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/weight.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/weight.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/weight.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/weight.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/weight.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/weight.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/weight.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/weight.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/weight.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/weight.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/weight.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/weight.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/weight.cpp: In function ‘void ncbi::objects::GetProteinWeights(const ncbi::objects::CBioseq_Handle&, ncbi::objects::TWeights&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/weight.cpp:363:18: warning: catching polymorphic type ‘class ncbi::objects::CObjmgrUtilException’ by value [-Wcatch-value=] 363 | } catch (CObjmgrUtilException) { | ^~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:89: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:89: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp: In function ‘ncbi::CRef ncbi::objects::sequence::SourceToProduct(const ncbi::objects::CSeq_feat&, const ncbi::objects::CSeq_loc&, ncbi::objects::sequence::TS2PFlags, ncbi::objects::CScope*, int*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:703:18: warning: catching polymorphic type ‘class ncbi::objects::CObjmgrUtilException’ by value [-Wcatch-value=] 703 | } catch (CObjmgrUtilException) { | ^~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp: In function ‘ncbi::CRef ncbi::objects::sequence::ProductToSource(const ncbi::objects::CSeq_feat&, const ncbi::objects::CSeq_loc&, ncbi::objects::sequence::TP2SFlags, ncbi::objects::CScope*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:746:18: warning: catching polymorphic type ‘class ncbi::objects::CObjmgrUtilException’ by value [-Wcatch-value=] 746 | } catch (CObjmgrUtilException) { | ^~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:751:18: warning: catching polymorphic type ‘class ncbi::objects::CObjmgrUtilException’ by value [-Wcatch-value=] 751 | } catch (CObjmgrUtilException) { | ^~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp: In function ‘void ncbi::objects::sequence::GetOverlappingFeatures(const ncbi::objects::CSeq_loc&, ncbi::objects::CSeqFeatData_Base::E_Choice, ncbi::objects::CSeqFeatData::ESubtype, ncbi::objects::sequence::EOverlapType, ncbi::objects::sequence::TFeatScores&, ncbi::objects::CScope&, ncbi::objects::sequence::TBestFeatOpts, ncbi::objects::sequence::CGetOverlappingFeaturesPlugin*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:971:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 971 | auto_ptr feat_it_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp: At global scope: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:1684:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1684 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp: In function ‘ncbi::CConstRef ncbi::objects::sequence::GetBestCdsForMrna(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, ncbi::objects::sequence::TBestFeatOpts, ncbi::objects::sequence::CGetOverlappingFeaturesPlugin*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:1773:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1773 | auto_ptr cds_plugin( | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp: In member function ‘ncbi::CRef ncbi::objects::SRelLoc::Resolve(const ncbi::objects::CSeq_loc&, ncbi::objects::CScope*, ncbi::objects::SRelLoc::TFlags) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:4612:22: warning: catching polymorphic type ‘class ncbi::objects::CObjmgrUtilException’ by value [-Wcatch-value=] 4612 | } catch (CObjmgrUtilException) { | ^~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp: In instantiation of ‘void ncbi::objects::x_Translate(const Container&, std::string&, int, const ncbi::objects::CGenetic_code*, bool, bool, bool, bool, bool*) [with Container = std::__cxx11::basic_string; std::string = std::__cxx11::basic_string]’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:3952:16: required from here /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:3496:43: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 3496 | const size_t usable_size = seq.size() > frame ? seq.size() - frame : 0; | ~~~~~~~~~~~^~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp: In instantiation of ‘void ncbi::objects::x_Translate(const Container&, std::string&, int, const ncbi::objects::CGenetic_code*, bool, bool, bool, bool, bool*) [with Container = ncbi::objects::CSeqVector; std::string = std::__cxx11::basic_string]’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:3980:16: required from here /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp:3496:43: warning: comparison of integer expressions of different signedness: ‘ncbi::TSeqPos’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objmgr/util' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_options.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_source_group.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature_edit.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/objutil.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_align_util.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_loc_util.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/obj_sniff.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/create_defline.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seqtitle.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/indexer.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/weight.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/weight.cpp -o weight.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/sequence.cpp -o sequence.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objistr.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objistr.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objistr.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objistr.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature.cpp:56: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objistr.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature.cpp:56: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objistr.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature.cpp:86: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objistr.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature.cpp:86: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objistr.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat_macros.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/misc/sequence_macros.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/indexer.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/unicode.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/indexer.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat_macros.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/misc/sequence_macros.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/indexer.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/unicode.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/indexer.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/indexer.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/unicode.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/indexer.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/indexer.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/unicode.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/indexer.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/indexer.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/unicode.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/indexer.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/indexer.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/unicode.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/indexer.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/indexer.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/unicode.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/indexer.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/indexer.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/unicode.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/indexer.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/indexer.cpp: In function ‘int ncbi::objects::SkipMixedContent(const char*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/indexer.cpp:3576:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 3576 | for (int i = 0; i < sizeof (mixedTags); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/indexer.cpp: In member function ‘void ncbi::objects::CWordPairIndexer::PopulateWordPairIndex(std::string)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/indexer.cpp:3653:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3653 | for (int i = 0; i < str.length(); i++) { | ~~^~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seqtitle.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seqtitle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seqtitle.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seqtitle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seqtitle.cpp:62: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seqtitle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seqtitle.cpp:62: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seqtitle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seqtitle.cpp:62: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seqtitle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seqtitle.cpp:67: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seqtitle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seqtitle.cpp:67: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seqtitle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seqtitle.cpp:67: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seqtitle.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/strsearch.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/strsearch.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/strsearch.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/strsearch.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/strsearch.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/strsearch.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/create_defline.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/strsearch.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/create_defline.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/strsearch.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/create_defline.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/create_defline.cpp: In member function ‘void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProteinIdx(const ncbi::objects::CBioseq_Handle&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/create_defline.cpp:2117:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2117 | if (offset > 0 && offset < m_MainTitle.length()) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/create_defline.cpp: In member function ‘void ncbi::objects::sequence::CDeflineGenerator::x_SetTitleFromProtein(const ncbi::objects::CBioseq_Handle&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/create_defline.cpp:2321:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2321 | if (offset > 0 && offset < m_MainTitle.length()) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/create_defline.cpp: In function ‘size_t s_TitleEndsInOrganism(std::string&, ncbi::CTempString)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/create_defline.cpp:2957:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 2957 | if (pos == idx + 2) { | ~~~~^~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/create_defline.cpp: In member function ‘std::string ncbi::objects::sequence::CDeflineGenerator::GenerateDefline(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::CDeflineGenerator::TUserFlags)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/create_defline.cpp:3637:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 3637 | for (int i = 0; i < sizeof (s_tpaPrefixList) / sizeof (const char*); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/seq_loc_util.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_loc_util.cpp:50: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_loc_util.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/seq_loc_util.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_loc_util.cpp:50: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_loc_util.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/seq_loc_util.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_loc_util.cpp:50: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_loc_util.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_loc_util.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_loc_util.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_loc_util.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_loc_util.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_loc_util.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_loc_util.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_loc_util.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_loc_util.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_loc_util.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_loc_util.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_loc_util.cpp: In function ‘bool ncbi::objects::sequence::BadSeqLocSortOrder(const ncbi::objects::CBioseq_Handle&, const ncbi::objects::CSeq_loc&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_loc_util.cpp:612:14: warning: catching polymorphic type ‘class ncbi::CException’ by value [-Wcatch-value=] 612 | } catch (CException) { | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_align_util.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_align_util.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_align_util.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_align_util.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_align_util.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_align_util.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_align_util.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_align_util.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_align_util.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_align_util.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_align_util.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_align_util.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_align_util.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_align_util.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_align_util.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_align_util.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp: In function ‘ncbi::objects::CSequenceAmbigTrimmer::TTrimRuleVec* ncbi::objects::{anonymous}::s_DefaultRuleCreator()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:142:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 142 | auto_ptr pTrimRuleVec( new CSequenceAmbigTrimmer::TTrimRuleVec ); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/tempstr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp: In member function ‘virtual ncbi::objects::CSequenceAmbigTrimmer::EResult ncbi::objects::CSequenceAmbigTrimmer::DoTrim(ncbi::objects::CBioseq_Handle&, ncbi::CRangeCollection*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:237:32: warning: comparison of integer expressions of different signedness: ‘const TSignedSeqPos’ {aka ‘const int’} and ‘ncbi::CRangeCollection::position_type’ {aka ‘unsigned int’} [-Wsign-compare] 237 | _ASSERT(bioseq_len == trimmed_ranges->GetCoveredLength()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:110:19: note: in definition of macro ‘NCBI_ALWAYS_ASSERT’ 110 | do { if ( !(expr) ) \ | ^~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:160:25: note: in expansion of macro ‘NCBI_ASSERT’ 160 | #define _ASSERT(expr) NCBI_ASSERT(expr, "") | ^~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:237:13: note: in expansion of macro ‘_ASSERT’ 237 | _ASSERT(bioseq_len == trimmed_ranges->GetCoveredLength()); | ^~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:252:32: warning: comparison of integer expressions of different signedness: ‘const TSignedSeqPos’ {aka ‘const int’} and ‘ncbi::CRangeCollection::position_type’ {aka ‘unsigned int’} [-Wsign-compare] 252 | _ASSERT(bioseq_len == trimmed_ranges->GetCoveredLength()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:110:19: note: in definition of macro ‘NCBI_ALWAYS_ASSERT’ 110 | do { if ( !(expr) ) \ | ^~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:160:25: note: in expansion of macro ‘NCBI_ASSERT’ 160 | #define _ASSERT(expr) NCBI_ASSERT(expr, "") | ^~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp:252:13: note: in expansion of macro ‘_ASSERT’ 252 | _ASSERT(bioseq_len == trimmed_ranges->GetCoveredLength()); | ^~~~~~~ ILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature.cpp -o feature.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/indexer.cpp -o indexer.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/create_defline.cpp -o create_defline.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFEIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/objutil.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/objutil.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/objutil.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/objutil.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/objutil.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/objutil.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/objutil.cpp:54: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/objutil.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/objutil.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/objutil.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/objutil.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/objutil.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/objutil.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/objutil.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/objutil.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/objutil.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/objutil.cpp: In instantiation of ‘bool ncbi::objects::{anonymous}::s_IsTagStart(const _T&, const _T&) [with _T = const char*]’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/objutil.cpp:1824:61: required from here /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/objutil.cpp:1752:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 1752 | for (int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/objutil.cpp:1114:13: warning: ‘bool ncbi::objects::s_IsValidAccession(const string&)’ defined but not used [-Wunused-function] 1114 | static bool s_IsValidAccession(const string& acc) | ^~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature_edit.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature_edit.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature_edit.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature_edit.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature_edit.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature_edit.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef_source_desc.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef_source_desc.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef_source_desc.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef_source_desc.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef_source_desc.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef_source_desc.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef_source_desc.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef_mod_combo.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef_mod_combo.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp: In member function ‘bool ncbi::objects::CAutoDefModifierCombo::AddQual(bool, int, bool)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp:1034:10: warning: unused variable ‘added’ [-Wunused-variable] 1034 | bool added = false, rval = false; | ^~~~~ -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/objutil.cpp -o objutil.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/feature_edit.cpp -o feature_edit.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef.cpp -o autodef.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause_base.cpp -o autodef_feature_clause_base.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_source_desc.cpp -o autodef_source_desc.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_available_modifier.cpp -o autodef_available_modifier.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_mod_combo.cpp -o autodef_mod_combo.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_source_group.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_source_group.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_source_group.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_source_group.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_source_group.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_source_group.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef_source_group.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_source_group.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_source_group.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef_source_group.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_source_group.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_source_group.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef_available_modifier.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef_options.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef_available_modifier.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef_options.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ T -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_source_group.cpp -o autodef_source_group.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_feature_clause.cpp -o autodef_feature_clause.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/util/autodef_options.cpp -o autodef_options.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxobjutil.so .libxobjutil.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxobjutil.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC weight.o sequence.o feature.o indexer.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o feature_edit.o autodef.o autodef_feature_clause_base.o autodef_source_desc.o autodef_available_modifier.o autodef_mod_combo.o autodef_source_group.o autodef_feature_clause.o autodef_options.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lsubmit -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxobjutil.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxobjutil.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxobjutil.so ln -f .xobjutil.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xobjutil.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objmgr/util' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C unit_test -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objmgr/util/unit_test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objmgr/util/unit_test' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objmgr/util' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C split -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objmgr/split' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split TMPL=id2_split -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objmgr/split' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objmgr/split' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split TMPL=id2_split -w all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objmgr/split' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/split_exceptions.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/size.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/chunk_info.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/annot_piece.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/asn_sizer.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/object_splitinfo.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/id_range.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/split_blob.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_params.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/split_blob.cpp -o split_blob.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbiIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp:69: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp:69: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp:69: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp:59: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp:59: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp:59: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/split/blob_splitter_impl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/id_range.cpp -o id_range.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include 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id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libid2_split.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libid2_split.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libid2_split.so ln -f .id2_split.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.id2_split.dep make[4]: Leaving directory 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/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/snputil/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build snputil/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/snputil/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/uudutil/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/uudutil/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/uudutil/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build uudutil/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/uudutil/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/variation/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/variation/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/variation/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build variation/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/variation/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/writers/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/writers/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/writers/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build writers/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/writers/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/import/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/import/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/import/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build import/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/import/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/flatfile/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/flatfile/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/flatfile/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build flatfile/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/flatfile/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C logging -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/logging' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/logging TMPL=logging -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/logging' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/logging' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/logging TMPL=logging -w all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/logging' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/logging/listener.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/logging/message.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/logging/message.cpp -o message.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/logging/listener.cpp -o listener.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxlogging.so .libxlogging.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxlogging.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC message.o listener.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxlogging.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxlogging.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxlogging.so ln -f .xlogging.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xlogging.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/logging' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/logging' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C unit_test_util -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/unit_test_util' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/unit_test_util' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C readers -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/readers' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/readers' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/app/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/app/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/app/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build app/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/readers/app/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/readers/test/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/unit_test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/unit_test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/unit_test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build unit_test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/readers/unit_test/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers TMPL=xobjread -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/readers' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/readers' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers TMPL=xobjreadex -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/readers' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/readers' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers TMPL=xobjread -w all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/readers' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/line_error.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/message_listener.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/mod_to_enum.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/feature_mod_apply.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/mod_error.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/mod_reader.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/struct_cmt_reader.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/ucscregion_reader.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_converter.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta_exception.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/source_mod_parser.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/best_feat_finder.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/psl_data.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/psl_reader.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/vcf_reader.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gvf_reader.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff2_reader.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff2_data.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff_base_columns.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gtf_reader.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff3_reader.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff3_sofa.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/wiggle_reader.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/rm_reader.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/readfeat.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/reader_base.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/phrap.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/microarray_reader.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/reader_data.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/track_data.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff_reader.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/getfeature.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta_reader_utils.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta_aln_builder.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_reader.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_util.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_formatguess.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_error_reporter.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_errors.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/alnread.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_formats.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/cigar.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/bed_reader.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_util.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_seq_entry.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_read.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/acc_pattern.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/seqid_validate.cpp. Updating dependency information for /tmpIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/format_guess_ex.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/format_guess_ex.hpp:81:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 81 | auto_ptr m_Guesser; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/format_guess_ex.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/format_guess_ex.cpp:59: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/format_guess_ex.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/format_guess_ex.cpp:59: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/format_guess_ex.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/format_guess_ex.cpp:59: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/format_guess_ex.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/format_guess_ex.cpp: In member function ‘bool ncbi::CFormatGuessEx::x_TryRmo()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/format_guess_ex.cpp:226:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 226 | auto_ptr reader(new CRepeatMaskerReader(Flags)); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/format_guess_ex.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/seqid_validate.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/seqid_validate.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/seqid_validate.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/seqid_validate.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/seqid_validate.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/seqid_validate.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/format_guess_ex.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/read_util.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/reader_message_handler.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/reader_listener.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/reader_message.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/reader_message.cpp -o reader_message.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/reader_listener.cpp -o reader_listener.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/reader_message_handler.cpp -o reader_message_handler.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/read_util.cpp -o read_util.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/seqid_validate.cpp -o seqid_validate.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_read.cpp: In function ‘ncbi::CRef ncbi::AgpRead(ncbi::CNcbiIstream&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_read.cpp:58:12: warning: ‘void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’ is deprecated [-Wdeprecated-declarations] 58 | AgpRead(is, entries, component_id_rule, set_gap_data, component_types); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_read.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/agp_read.hpp:61:6: note: declared here 61 | void AgpRead(CNcbiIstream& is, | ^~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_read.cpp: In function ‘void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_read.cpp:74:12: warning: ‘void ncbi::AgpRead(ncbi::CNcbiIstream&, std::vector >&, ncbi::EAgpRead_IdRule, bool, std::vector >*)’ is deprecated [-Wdeprecated-declarations] 74 | AgpRead(is, bioseqs, component_id_rule, set_gap_data, component_types); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_read.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/agp_read.hpp:52:6: note: declared here 52 | void AgpRead(CNcbiIstream& is, | ^~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/tempstr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/agp_util.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_util.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_util.cpp: In constructor ‘ncbi::CAgpErrEx::CAgpErrEx(ncbi::CNcbiOstream*, bool, EOwnership)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_util.cpp:1480:25: warning: ‘ncbi::CAgpErr::s_msg’ is deprecated: [-Wdeprecated-declarations] 1480 | NCBI_ASSERT( sizeof(s_msg)/sizeof(s_msg[0])==G_Last+1, | ^~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:110:19: note: in definition of macro ‘NCBI_ALWAYS_ASSERT’ 110 | do { if ( !(expr) ) \ | ^~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_util.cpp:1480:5: note: in expansion of macro ‘NCBI_ASSERT’ 1480 | NCBI_ASSERT( sizeof(s_msg)/sizeof(s_msg[0])==G_Last+1, | ^~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_util.cpp:151:21: note: declared here 151 | const CAgpErr::TStr CAgpErr::s_msg[]= { | ^~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/tempstr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/agp_util.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_util.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_util.cpp:1480:39: warning: ‘ncbi::CAgpErr::s_msg’ is deprecated: [-Wdeprecated-declarations] 1480 | NCBI_ASSERT( sizeof(s_msg)/sizeof(s_msg[0])==G_Last+1, | ^~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:110:19: note: in definition of macro ‘NCBI_ALWAYS_ASSERT’ 110 | do { if ( !(expr) ) \ | ^~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_util.cpp:1480:5: note: in expansion of macro ‘NCBI_ASSERT’ 1480 | NCBI_ASSERT( sizeof(s_msg)/sizeof(s_msg[0])==G_Last+1, | ^~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_util.cpp:151:21: note: declared here 151 | const CAgpErr::TStr CAgpErr::s_msg[]= { | ^~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_util.cpp: In member function ‘int ncbi::CAgpErrEx::GetCount(ncbi::CAgpErr::EErrCode) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_util.cpp:1700:14: warning: comparison between ‘enum ncbi::CAgpErr::EErrCode’ and ‘enum ncbi::CAgpErrEx::’ [-Wenum-compare] 1700 | if (code < CODE_Last) { | ~~~~~^~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp: In member function ‘virtual void ncbi::CAgpValidateReader::OnGapOrComponent()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp:160:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ncbi::TSeqPos’ {aka ‘unsigned int’} [-Wsign-compare] 160 | if(m_max_obj_beg < m_this_row->object_beg) m_max_obj_beg = m_this_row->object_beg; | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp:229:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ncbi::TSeqPos’ {aka ‘unsigned int’} [-Wsign-compare] 229 | if(m_max_comp_beg < m_this_row->component_beg) m_max_comp_beg = m_this_row->component_beg; | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp:405:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ncbi::TSeqPos’ {aka ‘unsigned int’} [-Wsign-compare] 405 | if(it->second != m_this_row->component_end) m_has_partial_comp=true; | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp:407:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ncbi::TSeqPos’ {aka ‘unsigned int’} [-Wsign-compare] 407 | if(it->second > m_this_row->component_end || m_this_row->component_beg>1) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp: In member function ‘virtual void ncbi::CAgpValidateReader::OnObjectChange()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp:542:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ncbi::TSeqPos’ {aka ‘unsigned int’} [-Wsign-compare] 542 | if(m_expected_obj_len!=m_prev_row->object_end) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp:586:28: warning: catching polymorphic type ‘class ncbi::CException’ by value [-Wcatch-value=] 586 | catch(CException e){ | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/bed_reader.cpp: In member function ‘virtual bool ncbi::objects::CBedReader::xDetermineLikelyColumnCount(ncbi::objects::CLinePreBuffer&, ncbi::objects::ILineErrorListener*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/bed_reader.cpp:508:35: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 508 | if (blockSizes.size() != blockCount) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/bed_reader.cpp:529:36: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 529 | if (blockStarts.size() != blockCount) { | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_read.cpp -o agp_read.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_util.cpp -o agp_util.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/cigar.cpp -o cigar.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp -o fastIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp: In constructor ‘ncbi::objects::CFastaReader::CFastaReader(ncbi::ILineReader&, ncbi::objects::CFastaReader::TFlags, ncbi::objects::CFastaReader::FIdCheck)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: ‘ncbi::objects::CFastaReader::m_IDGenerator’ is deprecated [-Wdeprecated-declarations] 225 | m_fIdCheck(f_idcheck) | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:407:45: note: declared here 407 | NCBI_DEPRECATED CRef m_IDGenerator; | ^~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: ‘ncbi::objects::CFastaReader::m_IDGenerator’ is deprecated [-Wdeprecated-declarations] 225 | m_fIdCheck(f_idcheck) | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:407:45: note: declared here 407 | NCBI_DEPRECATED CRef m_IDGenerator; | ^~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: ‘ncbi::objects::CFastaReader::m_IDGenerator’ is deprecated [-Wdeprecated-declarations] 225 | m_fIdCheck(f_idcheck) | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:407:45: note: declared here 407 | NCBI_DEPRECATED CRef m_IDGenerator; | ^~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: ‘ncbi::objects::CFastaReader::m_IDGenerator’ is deprecated [-Wdeprecated-declarations] 225 | m_fIdCheck(f_idcheck) | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:407:45: note: declared here 407 | NCBI_DEPRECATED CRef m_IDGenerator; | ^~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: ‘ncbi::objects::CFastaReader::m_ExpectedEnd’ is deprecated [-Wdeprecated-declarations] 225 | m_fIdCheck(f_idcheck) | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:412:29: note: declared here 412 | NCBI_DEPRECATED TSeqPos m_ExpectedEnd; | ^~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: ‘ncbi::objects::CFastaReader::m_ExpectedEnd’ is deprecated [-Wdeprecated-declarations] 225 | m_fIdCheck(f_idcheck) | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:412:29: note: declared here 412 | NCBI_DEPRECATED TSeqPos m_ExpectedEnd; | ^~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: ‘ncbi::objects::CFastaReader::m_gap_linkage_evidence’ is deprecated: [-Wdeprecated-declarations] 225 | m_fIdCheck(f_idcheck) | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:433:53: note: declared here 433 | NCBI_STD_DEPRECATED("") SGap::TLinkEvidSet m_gap_linkage_evidence; | ^~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: ‘ncbi::objects::CFastaReader::m_gap_linkage_evidence’ is deprecated: [-Wdeprecated-declarations] 225 | m_fIdCheck(f_idcheck) | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:433:53: note: declared here 433 | NCBI_STD_DEPRECATED("") SGap::TLinkEvidSet m_gap_linkage_evidence; | ^~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: ‘ncbi::objects::CFastaReader::m_gap_linkage_evidence’ is deprecated: [-Wdeprecated-declarations] 225 | m_fIdCheck(f_idcheck) | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:433:53: note: declared here 433 | NCBI_STD_DEPRECATED("") SGap::TLinkEvidSet m_gap_linkage_evidence; | ^~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:225:27: warning: ‘ncbi::objects::CFastaReader::m_gap_linkage_evidence’ is deprecated: [-Wdeprecated-declarations] 225 | m_fIdCheck(f_idcheck) | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:433:53: note: declared here 433 | NCBI_STD_DEPRECATED("") SGap::TLinkEvidSet m_gap_linkage_evidence; | ^~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp: In constructor ‘ncbi::objects::CFastaReader::CFastaReader(ncbi::objects::CReaderBase::TReaderFlags, ncbi::objects::CFastaReader::TFlags, ncbi::objects::CFastaReader::FIdCheck)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:241:27: warning: ‘ncbi::objects::CFastaReader::m_IDGenerator’ is deprecated [-Wdeprecated-declarations] 241 | m_fIdCheck(f_idcheck) | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:407:45: note: declared here 407 | NCBI_DEPRECATED CRef m_IDGenerator; | ^~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:241:27: warning: ‘ncbi::objects::CFastaReader::m_IDGenerator’ is deprecated [-Wdeprecated-declarations] 241 | m_fIdCheck(f_idcheck) | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:407:45: note: declared here 407 | NCBI_DEPRECATED CRef m_IDGenerator; | ^~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:241:27: warning: ‘ncbi::objects::CFastaReader::m_IDGenerator’ is deprecated [-Wdeprecated-declarations] 241 | m_fIdCheck(f_idcheck) | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:407:45: note: declared here 407 | NCBI_DEPRECATED CRef m_IDGenerator; | ^~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:241:27: warning: ‘ncbi::objects::CFastaReader::m_IDGenerator’ is deprecated [-Wdeprecated-declarations] 241 | m_fIdCheck(f_idcheck) | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:407:45: note: declared here 407 | NCBI_DEPRECATED CRef m_IDGenerator; | ^~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:241:27: warning: ‘ncbi::objects::CFastaReader::m_ExpectedEnd’ is deprecated [-Wdeprecated-declarations] 241 | m_fIdCheck(f_idcheck) | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:412:29: note: declared here 412 | NCBI_DEPRECATED TSeqPos m_ExpectedEnd; | ^~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:241:27: warning: ‘ncbi::objects::CFastaReader::m_ExpectedEnd’ is deprecated [-Wdeprecated-declarations] 241 | m_fIdCheck(f_idcheck) | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:412:29: note: declared here 412 | NCBI_DEPRECATED TSeqPos m_ExpectedEnd; | ^~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:241:27: warning: ‘ncbi::objects::CFastaReader::m_gap_linkage_evidence’ is deprecated: [-Wdeprecated-declarations] 241 | m_fIdCheck(f_idcheck) | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:433:53: note: declared here 433 | NCBI_STD_DEPRECATED("") SGap::TLinkEvidSet m_gap_linkage_evidence; | ^~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:241:27: warning: ‘ncbi::objects::CFastaReader::m_gap_linkage_evidence’ is deprecated: [-Wdeprecated-declarations] 241 | m_fIdCheck(f_idcheck) | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:433:53: note: declared here 433 | NCBI_STD_DEPRECATED("") SGap::TLinkEvidSet m_gap_linkage_evidence; | ^~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:241:27: warning: ‘ncbi::objects::CFastaReader::m_gap_linkage_evidence’ is deprecated: [-Wdeprecated-declarations] 241 | m_fIdCheck(f_idcheck) | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:433:53: note: declared here 433 | NCBI_STD_DEPRECATED("") SGap::TLinkEvidSet m_gap_linkage_evidence; | ^~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:241:27: warning: ‘ncbi::objects::CFastaReader::m_gap_linkage_evidence’ is deprecated: [-Wdeprecated-declarations] 241 | m_fIdCheck(f_idcheck) | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:433:53: note: declared here 433 | NCBI_STD_DEPRECATED("") SGap::TLinkEvidSet m_gap_linkage_evidence; | ^~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp: In destructor ‘virtual ncbi::objects::CFastaReader::~CFastaReader()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:247:33: warning: ‘ncbi::objects::CFastaReader::m_IDGenerator’ is deprecated [-Wdeprecated-declarations] 247 | CFastaReader::~CFastaReader(void) | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:407:45: note: declared here 407 | NCBI_DEPRECATED CRef m_IDGenerator; | ^~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:247:33: warning: ‘ncbi::objects::CFastaReader::m_IDGenerator’ is deprecated [-Wdeprecated-declarations] 247 | CFastaReader::~CFastaReader(void) | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:407:45: note: declared here 407 | NCBI_DEPRECATED CRef m_IDGenerator; | ^~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:247:33: warning: ‘ncbi::objects::CFastaReader::m_gap_linkage_evidence’ is deprecated: [-Wdeprecated-declarations] 247 | CFastaReader::~CFastaReader(void) | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:433:53: note: declared here 433 | NCBI_STD_DEPRECATED("") SGap::TLinkEvidSet m_gap_linkage_evidence; | ^~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:247:33: warning: ‘ncbi::objects::CFastaReader::m_gap_linkage_evidence’ is deprecated: [-Wdeprecated-declarations] 247 | CFastaReader::~CFastaReader(void) | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:433:53: note: declared here 433 | NCBI_STD_DEPRECATED("") SGap::TLinkEvidSet m_gap_linkage_evidence; | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/alnread.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/alnread.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/aln_reader.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_formatguess.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/alnread.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/alnread.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/aln_reader.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_formatguess.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/alnread.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/alnread.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_errors.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_errors.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/aln_error_reporter.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_error_reporter.cpp:32: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/aln_error_reporter.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_error_reporter.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_formatguess.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_formatguess.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/aln_reader.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_formatguess.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_formatguess.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_formatguess.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/aln_reader.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_formatguess.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_formatguess.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_formatguess.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_formatguess.cpp: In member function ‘bool ncbi::objects::CAlnFormatGuesser::xSampleIsClustal(ncbi::objects::CAlnFormatGuesser::TSample&, ncbi::objects::CPeekAheadStream&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_formatguess.cpp:137:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 137 | if (lineCount < sample.size()) { | ~~~~~~~~~~^~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_formatguess.cpp: In member function ‘bool ncbi::objects::CAlnFormatGuesser::xSampleIsFastaGap(const TSample&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_formatguess.cpp:176:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 176 | for ( ; i < sample.size(); ++i) { | ~~^~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_formatguess.cpp:181:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 181 | if (i < sample.size()) { | ~~^~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_formatguess.cpp: In member function ‘bool ncbi::objects::CAlnFormatGuesser::xSampleIsSequin(const TSample&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_formatguess.cpp:234:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 234 | for (int index=0; index < tokens.size(); ++index) { | ~~~~~~^~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_formatguess.cpp: In member function ‘bool ncbi::objects::CAlnFormatGuesser::xSampleIsMultAlign(const TSample&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_formatguess.cpp:258:23: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 258 | if (sample.size() < lineIndex + 4) { | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_formatguess.cpp:295:22: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 295 | return (dataSize == (endOffset - startOffset + 1)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_util.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_util.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_util.cpp: In function ‘void ncbi::objects::AlnUtil::CheckId(const string&, const std::vector&, int, int, bool)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_util.cpp:56:28: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 56 | if ((orderedIds.size() > idCount) && | ~~~~~~~~~~~~~~~~~~^~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/aln_reader.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_reader.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/aln_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_reader.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/aln_reader.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_reader.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/aln_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_reader.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/aln_reader.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_reader.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/aln_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_reader.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_reader.cpp: In member function ‘void ncbi::CAlnReader::x_VerifyAlignmentInfo(const ncbi::objects::SAlignmentFile&, ncbi::CAlnReader::TReadFlags)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_reader.cpp:409:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 409 | for (int i=0; i< numDeflines; ++i) { | ~^~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_reader.cpp: In member function ‘bool ncbi::CAlnReader::x_IsGap(ncbi::CAlnReader::TNumrow, ncbi::TSeqPos, const string&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_reader.cpp:461:13: warning: comparison of integer expressions of different signedness: ‘ncbi::CAlnReader::TNumrow’ {aka ‘int’} and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 461 | if (row > m_MiddleSections.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/tempstr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/aln_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_reader.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_reader.cpp: In member function ‘virtual ncbi::CRef ncbi::CAlnReader::GenerateID(const string&, const TSeqPos&, ncbi::CAlnReader::TFastaFlags)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_reader.cpp:489:19: warning: comparison of integer expressions of different signedness: ‘const TSeqPos’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare] 489 | _ASSERT(index < m_Dim); | ~~~~~~^~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:110:19: note: in definition of macro ‘NCBI_ALWAYS_ASSERT’ 110 | do { if ( !(expr) ) \ | ^~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:160:25: note: in expansion of macro ‘NCBI_ASSERT’ 160 | #define _ASSERT(expr) NCBI_ASSERT(expr, "") | ^~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_reader.cpp:489:5: note: in expansion of macro ‘_ASSERT’ 489 | _ASSERT(index < m_Dim); | ^~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_reader.cpp: In member function ‘void ncbi::CAlnReader::x_AssignDensegIds(ncbi::CAlnReader::TFastaFlags, ncbi::objects::CDense_seg&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_reader.cpp:507:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 507 | if (i < m_DeflineInfo.size() && !m_DeflineInfo[i].mData.empty()) { | ~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/tempstr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/aln_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_reader.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_reader.cpp: In member function ‘ncbi::CRef ncbi::CAlnReader::GetSeqAlign(ncbi::CAlnReader::TFastaFlags, ncbi::objects::ILineErrorListener*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_reader.cpp:632:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘TNumseg’ {aka ‘int’} [-Wsign-compare] 632 | _ASSERT(lens.size() == numseg); | ~~~~~~~~~~~~^~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:110:19: note: in definition of macro ‘NCBI_ALWAYS_ASSERT’ 110 | do { if ( !(expr) ) \ | ^~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:160:25: note: in expansion of macro ‘NCBI_ASSERT’ 160 | #define _ASSERT(expr) NCBI_ASSERT(expr, "") | ^~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_reader.cpp:632:9: note: in expansion of macro ‘_ASSERT’ 632 | _ASSERT(lens.size() == numseg); | ^~~~~~~ a.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_formats.cpp -o aln_formats.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/alnread.cpp -o alnread.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_errors.cpp -o aln_errors.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_error_reporter.cpp -o aln_error_reporter.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_formatguess.cpp -o aln_formatguess.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_util.cpp -o aln_util.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner.cpp: In member function ‘virtual void ncbi::objects::CAlnScanner::xVerifyAlignmentData(const ncbi::objects::CSequenceInfo&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner.cpp:92:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 92 | for (auto i=0; i < mSequences.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner.cpp: In member function ‘bool ncbi::objects::CAlnScanner::xSeqIdIsEqualToInfoAt(const string&, int)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner.cpp:233:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 233 | if (index >= mSeqIds.size()) { | ~~~~~~^~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp:52: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp: In member function ‘virtual void ncbi::objects::CAlnScannerFastaGap::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp:121:41: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 121 | if (currentDataSize != expectedDataSize) { | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp: In member function ‘virtual void ncbi::objects::CAlnScannerClustal::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp:111:10: warning: unused variable ‘blockLineLength’ [-Wunused-variable] 111 | int blockLineLength = 0; | ^~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp:112:10: warning: unused variable ‘blockCount’ [-Wunused-variable] 112 | int blockCount = 0; | ^~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp:114:10: warning: unused variable ‘seqCount’ [-Wunused-variable] 114 | int seqCount = 0; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp: In member function ‘void ncbi::objects::CAlnScannerClustal::sProcessClustalDataLine(const std::vector >&, int, int, int, bool, int&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp:299:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 299 | if (currentLineLength != blockLineLength) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp: In member function ‘virtual void ncbi::objects::CAlnScannerPhylip::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp:129:27: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 129 | if (dataLineCount < mSequenceCount) { // in first block | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp: In member function ‘virtual void ncbi::objects::CAlnScannerPhylip::xVerifyAlignmentData(const ncbi::objects::CSequenceInfo&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp:210:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 210 | if (mSequenceCount != mSeqIds.size()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp: In member function ‘virtual void ncbi::objects::CAlnScannerSequin::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:73:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 73 | if (lineInBlock != mSeqIds.size()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:157:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 157 | if (lineInBlock >= mSeqIds.size()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:187:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 187 | for (auto i = 0; i < seqData.size(); ++i) { | ~~^~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp: In static member function ‘static bool ncbi::objects::CAlnScannerSequin::xExtractSequinSequenceData(const string&, std::string&, std::string&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:260:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 260 | for (auto curBlock = 3; curBlock < tokens.size() - 1; ++curBlock) { | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp:265:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 265 | for (auto curBlock = 1; curBlock < tokens.size(); ++curBlock) { | ~~~~~~~~~^~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp: In member function ‘virtual void ncbi::objects::CAlnScannerMultAlign::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp:125:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 125 | if (lineInBlock != expectedNumSequences) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp:135:48: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 135 | if (!inFirstBlock && lineInBlock == expectedNumSequences) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner.cpp -o aln_scanner.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_fastagap.cpp -o aln_scanner_fastagap.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_clustal.cpp -o aln_scanner_clustal.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_nexus.cpp -o aln_scanner_nexus.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_phylip.cpp -o aln_scanner_phylip.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_sequin.cpp -o aln_scanner_sequin.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/aln_scanner_multalign.cpp -o aln_scanner_multalign.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta_aln_builder.cpp -o fasta_aln_builder.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48lIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta_reader_utils.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta_reader_utils.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta_reader_utils.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta_reader_utils.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta_reader_utils.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta_reader_utils.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff_reader.cpp:60: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/gff_reader.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff_reader.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff_reader.cpp:60: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/gff_reader.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff_reader.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff_reader.cpp:60: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/gff_reader.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff_reader.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff_reader.cpp:473:18: warning: ‘CGFFReader’ is deprecated [-Wdeprecated-declarations] 473 | CRef | ^~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff_reader.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/gff_reader.hpp:71:44: note: declared here 71 | class NCBI_DEPRECATED NCBI_XOBJREAD_EXPORT CGFFReader | ^~~~~~~~~~ 0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta_reader_utils.cpp -o fasta_reader_utils.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/getfeature.cpp -o getfeature.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff_reader.cpp -o gff_reader.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/track_data.cpp -o track_data.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/reader_data.cpp -o reader_data.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/microarray_reader.cpp -o microarray_reader.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/phrap.cpp -o phrap.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/reader_base.cpp:67: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/reader_base.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/reader_base.cpp:67: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/reader_base.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/reader_base.cpp:99: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/reader_base.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/reader_base.cpp:88: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_base.hpp: In constructor ‘ncbi::objects::CReaderBase::CReaderBase(ncbi::objects::CReaderBase::TReaderFlags, const string&, const string&, ncbi::objects::CReaderBase::SeqIdResolver, ncbi::objects::CReaderListener*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_base.hpp:374:19: warning: ‘ncbi::objects::CReaderBase::mSeqIdResolve’ will be initialized after [-Wreorder] 374 | SeqIdResolver mSeqIdResolve; | ^~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_base.hpp:371:29: warning: ‘std::unique_ptr ncbi::objects::CReaderBase::m_pTrackDefaults’ [-Wreorder] 371 | unique_ptr m_pTrackDefaults; | ^~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/reader_base.cpp:155:1: warning: when initialized here [-Wreorder] 155 | CReaderBase::CReaderBase( | ^~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/readfeat.cpp:64: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/readfeat.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/readfeat.cpp:64: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/readfeat.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/readfeat.cpp: In member function ‘bool ncbi::objects::CFeatureTableReader_Imp::x_AddQualifierToCdregion(ncbi::CRef, ncbi::objects::CSeqFeatData&, ncbi::objects::CFeatureTableReader_Imp::EQual, const string&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/readfeat.cpp:1410:22: warning: catching polymorphic type ‘class ncbi::CStringException’ by value [-Wcatch-value=] 1410 | } catch( CStringException ) { | ^~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/rm_reader.cpp:63: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/rm_reader.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/rm_reader.cpp:63: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/rm_reader.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/rm_reader.cpp: In member function ‘ncbi::CRef ncbi::objects::CRepeatToFeat::operator()(const ncbi::objects::IRepeatRegion&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/rm_reader.cpp:554:44: warning: enum constant in boolean context [-Wint-in-bool-context] 554 | if (fRemoveRedundancy && m_Library && | ^~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff3_sofa.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/gff3_sofa.hpp:99:27: warning: ‘CGff3SofaTypes’ is deprecated [-Wdeprecated-declarations] 99 | CGff3SofaTypes& SofaTypes(); | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/gff3_sofa.hpp:72:44: note: declared here 72 | class NCBI_DEPRECATED NCBI_XOBJREAD_EXPORT CGff3SofaTypes | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff3_sofa.cpp:53:27: warning: ‘CGff3SofaTypes’ is deprecated [-Wdeprecated-declarations] 53 | CGff3SofaTypes& SofaTypes() | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff3_sofa.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/gff3_sofa.hpp:72:44: note: declared here 72 | class NCBI_DEPRECATED NCBI_XOBJREAD_EXPORT CGff3SofaTypes | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff3_sofa.cpp: In function ‘ncbi::objects::CGff3SofaTypes& ncbi::objects::SofaTypes()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff3_sofa.cpp:56:24: warning: ‘CGff3SofaTypes’ is deprecated [-Wdeprecated-declarations] 56 | static CSafeStatic m_Lookup; | ^~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff3_sofa.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/gff3_sofa.hpp:72:44: note: declared here 72 | class NCBI_DEPRECATED NCBI_XOBJREAD_EXPORT CGff3SofaTypes | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff3_sofa.cpp: In constructor ‘ncbi::objects::CGff3SofaTypes::CGff3SofaTypes()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff3_sofa.cpp:67:14: warning: ‘CSofaMap’ is deprecated [-Wdeprecated-declarations] 67 | CSofaMap SofaMap; | ^~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff3_sofa.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/sofa_map.hpp:43:39: note: declared here 43 | class NCBI_DEPRECATED NCBI_SEQ_EXPORT CSofaMap | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff3_reader.cpp: In member function ‘void ncbi::objects::CGff3Reader::xProcessAlignmentData(ncbi::objects::CSeq_annot&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff3_reader.cpp:232:21: warning: loop variable ‘id’ creates a copy from type ‘const std::__cxx11::basic_string’ [-Wrange-loop-construct] 232 | for (const auto id : mAlignmentData.mIds) { | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff3_reader.cpp:232:21: note: use reference type to prevent copying 232 | for (const auto id : mAlignmentData.mIds) { | ^~ | & -src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/reader_base.cpp -o reader_base.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/readfeat.cpp -o readfeat.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff3_sofa.cpp -o gff3_sofa.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff_base_columns.cpp -o gff_base_columns.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff2_data.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff2_data.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff2_data.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff2_data.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff2_reader.cpp: In member function ‘void ncbi::objects::CGff2Reader::x_ProcessAlignmentsGff(const std::__cxx11::list >&, const std::map, std::__cxx11::list > >&, ncbi::CRef)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff2_reader.cpp:385:21: warning: loop variable ‘id’ creates a copy from type ‘const std::__cxx11::basic_string’ [-Wrange-loop-construct] 385 | for (const auto id : id_list) { | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff2_reader.cpp:385:21: note: use reference type to prevent copying 385 | for (const auto id : id_list) { | ^~ | & /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff2_reader.cpp: In member function ‘bool ncbi::objects::CGff2Reader::xGetStartsOnPlusStrand(ncbi::TSeqPos, const std::vector >&, bool, std::vector&) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff2_reader.cpp:817:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 817 | for (auto i=0; i >&, ncbi::objects::ENa_strand, ncbi::objects::ENa_strand, ncbi::TSeqPos, ncbi::TSeqPos, const ncbi::objects::CGff2Record&, ncbi::objects::CSeq_align_Base::C_Segs::TDenseg&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff2_reader.cpp:906:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 906 | for (auto i=0; i)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff2_reader.cpp:991:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 991 | for (auto i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 144 | if (mBlockCount != mBlockSizes.size()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/psl_data.cpp:150:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 150 | if (mBlockCount != mBlockStartsQ.size()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/psl_data.cpp:156:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 156 | if (mBlockCount != mBlockStartsT.size()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/psl_reader.cpp -o psl_reader.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/psl_data.cpp -o psl_data.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/source_mod_parser.cpp -o sourceIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/source_mod_parser.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_autoinit.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/source_mod_parser.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/source_mod_parser.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_autoinit.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/source_mod_parser.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/source_mod_parser.cpp: In function ‘bool ncbi::objects::{anonymous}::x_FindBrackets(const ncbi::CTempString&, size_t&, size_t&, size_t&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/source_mod_parser.cpp:298:14: warning: unused variable ‘found’ [-Wunused-variable] 298 | bool found = false; | ^~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/source_mod_parser.cpp: In function ‘void ncbi::objects::s_GetPrimerInfo(const ncbi::objects::CSourceModParser::SMod*, const ncbi::objects::CSourceModParser::SMod*, std::vector, std::__cxx11::basic_string > >&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/source_mod_parser.cpp:879:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 879 | for (int i=0; i&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/source_mod_parser.cpp:915:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 915 | for (auto i=0; i class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbifile.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_converter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_converter.cpp:57: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbifile.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_converter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/ucscregion_reader.cpp:68: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/ucscregion_reader.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/ucscregion_reader.cpp:68: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/ucscregion_reader.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/mod_reader.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/mod_reader.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/mod_to_enum.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/mod_reader.cpp:52: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/mod_reader.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/mod_to_enum.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/mod_reader.cpp:52: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/mod_reader.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:66: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ _mod_parser.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/agp_converter.cpp -o agp_converter.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/ucscregion_reader.cpp -o ucscregion_reader.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/struct_cmt_reader.cpp -o struct_cmt_reader.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/mod_reader.cpp -o mod_reader.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/mod_error.cpp -o mod_error.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/descr_mod_apply.cpp -o descr_mod_apply.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/feature_mod_apply.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/feature_mod_apply.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/mod_to_enum.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/mod_to_enum.cpp:31: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_inst.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/mod_to_enum.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/mod_to_enum.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/mod_to_enum.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/mod_to_enum.cpp:31: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_inst_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_inst.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/mod_to_enum.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/mod_to_enum.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/message_listener.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/message_listener.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/message_listener.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ 2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/feature_mod_apply.cpp -o feature_mod_apply.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/mod_to_enum.cpp -o mod_to_enum.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/message_listener.cpp -o message_listener.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/line_error.cpp -o line_error.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxobjread.so .libxobjread.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxobjread.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC reader_message.o reader_listener.o reader_message_handler.o read_util.o format_guess_ex.o seqid_validate.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o bed_reader.o cigar.o fasta.o aln_formats.o alnread.o aln_errors.o aln_error_reporter.o aln_formatguess.o aln_util.o aln_reader.o aln_scanner.o aln_scanner_fastagap.o aln_scanner_clustal.o aln_scanner_nexus.o aln_scanner_phylip.o aln_scanner_sequin.o aln_scanner_multalign.o fasta_aln_builder.o fasta_reader_utils.o getfeature.o gff_reader.o track_data.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_sofa.o gff3_reader.o gtf_reader.o gff_base_columns.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o psl_reader.o psl_data.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o struct_cmt_reader.o mod_reader.o mod_error.o descr_mod_apply.o feature_mod_apply.o mod_to_enum.o message_listener.o line_error.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lsubmit -lseqset -lseq -lseqcode -lsequtil -lgeneral -lxutil -lxlogging -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxobjread.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxobjread.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxobjread.so ln -f .xobjread.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xobjread.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/readers' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers TMPL=xobjreadex -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/glimmer_reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/glimmer_reader.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/glimmer_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/glimmer_reader.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/glimmer_reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/glimmer_reader.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/glimmer_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/glimmer_reader.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/glimmer_reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/glimmer_reader.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/glimmer_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/glimmer_reader.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/glimmer_reader.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/glimmer_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/glimmer_reader.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/glimmer_reader.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/glimmer_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/glimmer_reader.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/glimmer_reader.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/glimmer_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/glimmer_reader.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/glimmer_reader.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/glimmer_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/glimmer_reader.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/glimmer_reader.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/glimmer_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/glimmer_reader.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/idmapper.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/idmapper.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/idmapper.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/idmapper.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_builtin.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_builtin.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/idmapper.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_builtin.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_builtin.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/idmapper.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_builtin.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_builtin.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/idmapper.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_config.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbireg.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_config.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/idmapper.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_config.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbireg.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_config.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/idmapper.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_config.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbireg.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_config.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/idmapper.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_database.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_database.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/idmapper.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_database.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_database.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/idmapper.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_database.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_database.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/readers' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_scope.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_database.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_config.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_builtin.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/glimmer_reader.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/glimmer_reader.cpp -o glimmer_reader.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper.cpp -o idmapper.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_builtin.cpp -o idmapper_builtin.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_config.cpp -o idmapper_config.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_database.cpp -o idmapper_database.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blaIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_scope.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_scope.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_scope.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_scope.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_scope.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_scope.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/tempstr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser_wrapper.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/tempstr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser_wrapper.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_annot_ci.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/tempstr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser_wrapper.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_annot_ci.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/tempstr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser_wrapper.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_annot_ci.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/tempstr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser_wrapper.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ st+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_gcassembly.cpp -o idmapper_gcassembly.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/idmapper_scope.cpp -o idmapper_scope.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/readers/source_mod_parser_wrapper.cpp -o source_mod_parser_wrapper.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxobjreadex.so .libxobjreadex.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxobjreadex.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC glimmer_reader.o idmapper.o idmapper_builtin.o idmapper_config.o idmapper_database.o idmapper_gcassembly.o idmapper_scope.o source_mod_parser_wrapper.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxobjread -lxobjutil -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxobjreadex.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxobjreadex.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxobjreadex.so ln -f .xobjreadex.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xobjreadex.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/readers' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/readers' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C app -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/readers/app' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/readers/app' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C test -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/readers/test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/readers/test' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C unit_test -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/readers/unit_test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/readers/unit_test' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/readers' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C blast -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_writer/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build gene_info_writer/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/gene_info_writer/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C seqdb_reader -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/seqdb_reader' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/seqdb_reader' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/seqdb_reader' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/seqdb_reader' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFF/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp: In member function ‘char* ncbi::CSeqDBAtlas::Alloc(size_t, ncbi::CSeqDBLockHold&, bool)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:359:16: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 359 | catch(std::bad_alloc) { | ^~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp: At global scope: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:160:13: warning: ‘void ncbi::s_SeqDB_FileNotFound(const string&)’ defined but not used [-Wunused-function] 160 | static void s_SeqDB_FileNotFound(const string & fname) | ^~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp: In function ‘void ncbi::SeqDB_ReadMemoryTaxIdList(const char*, const char*, ncbi::CSeqDBGiList::STaxIdsOids&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:1098:52: warning: comparison of integer expressions of different signedness: ‘Int4’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 1098 | if (((bendp - bbeginp) < 2) || (bbeginp[0] != 0xFFFFFFFF) | ~~~~~~~~~~~^~~~~~~~~~~~~ SET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blaIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/impl/seqdbvol.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function ‘int ncbi::CSeqDBVol::GetAmbigPartialSeq(int, char**, int, ncbi::ESeqDBAllocType, ncbi::CSeqDB::TSequenceRanges*, ncbi::CSeqDB::TSequenceRanges*, ncbi::CSeqDBLockHold&) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1518:50: warning: comparison of integer expressions of different signedness: ‘ncbi::TSeqPos’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 1518 | if ((*partial_ranges)[num_ranges - 1].second > base_length) { /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function ‘void ncbi::CSeqDBVol::GetRawSeqAndAmbig(int, const char**, int*, int*, ncbi::CSeqDBLockHold&) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:2776:11: warning: variable ‘map_end’ set but not used [-Wunused-but-set-variable] 2776 | TIndx map_end = 0; | ^~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function ‘ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const string&, std::vector >&, std::vector >&, std::vector&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:1001:9: warning: variable ‘found_short’ set but not used [-Wunused-but-set-variable] 1001 | int found_short(-1); | ^~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_IndexFileMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/error_codes.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp:112:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 112 | auto_ptr m_DataFileMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/error_codes.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ st/seqdb_reader/seqdbvol.cpp -o seqdbvol.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp -o seqdb_lmdb.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp -o seqdblmdbset.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp -o seqidlist_reader.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libseqdb.so .libseqdb.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libseqdb.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o seqdb_lmdb.o seqdblmdbset.o seqidlist_reader.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libseqdb.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libseqdb.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libseqdb.so ln -f .seqdb.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.seqdb.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/seqdb_reader' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C demo -w all_r || exit 5 make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/seqdb_reader/demo' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w all make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/seqdb_reader/demo' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=seqdb_demo /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 seqdb_demo.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread -o seqdb_demo /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f seqdb_demo /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f seqdb_demo /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/seqdb_demo make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/seqdb_reader/demo' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/seqdb_reader/demo' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C test -w all_r || exit 5 make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/seqdb_reader/test' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w all /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:141: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 141 | #pragma omp parallel default(none) num_threads(m_DbHandles.size()) \ | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:152: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 152 | #pragma omp for schedule(static, (oids2iterate.size()/m_DbHandles.size())) nowait | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:212: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 212 | #pragma omp parallel default(none) shared(kDbName, kNumThreads, kSeqType) num_threads(kNumThreads) | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function ‘void CSeqDBPerfApp::x_UpdateMemoryUsage(int)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:114:23: warning: ‘bool ncbi::GetMemoryUsage(size_t*, size_t*, size_t*)’ is deprecated [-Wdeprecated-declarations] 114 | if (GetMemoryUsage(&mu.total, &mu.resident, &mu.shared)) { | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:511:13: note: declared here 511 | extern bool GetMemoryUsage(size_t* total, size_t* resident, size_t* shared); | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function ‘int CSeqDBPerfApp::x_ScanDatabase()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:153:31: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 153 | for (ssize_t i = 0; i < oids2iterate.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function ‘virtual void CSeqDBPerfApp::Init()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:285:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 285 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/seqdb_reader/test' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=seqdb_perf /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 seqdb_perf.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -llmdb -lpthread -lm -lpthread -o seqdb_perf /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f seqdb_perf /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f seqdb_perf /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/seqdb_perf make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/seqdb_reader/test' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/seqdb_reader/test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/seqdb_reader' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C seqdb_writer -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/seqdb_writer' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/seqdb_writer' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/seqdb_writer' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/seqdb_writer' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Align_def_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Align_def.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq__.hpp:1, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Align_def_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Align_def.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq__.hpp:1, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Align_def_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Align_def.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq__.hpp:1, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_isam.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/tempstr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_isam.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/tempstr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_isam.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/tempstr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/sequtil/sequtil_convert.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/sequtil/sequtil_convert.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/sequtil/sequtil_convert.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ ools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gimask.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbienv.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbienv.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbienv.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbienv.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbienv.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbienv.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbienv.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp: In constructor ‘ncbi::CFastaBioseqSource::CFastaBioseqSource(ncbi::CNcbiIstream&, bool, bool, bool)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:709:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 709 | int iflags = CFastaReader::fAllSeqIds | | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:709:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 709 | int iflags = CFastaReader::fAllSeqIds | | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:720:33: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 720 | iflags |= CFastaReader::fAllSeqIds | CFastaReader::fRequireID; | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:720:33: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 720 | iflags |= CFastaReader::fAllSeqIds | CFastaReader::fRequireID; | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp -o writedb_lmdb.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp -o seqidlist_writer.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libwritedb.so .libwritedb.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libwritedb.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o writedb_lmdb.o seqidlist_writer.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libwritedb.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libwritedb.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libwritedb.so ln -f .writedb.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.writedb.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/seqdb_writer' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C unit_test -w all_r || exit 5 make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/seqdb_writer/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/seqdb_writer/unit_test' make[6]: Nothing to be done for 'mark-as-disabled_r'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/seqdb_writer/unit_test' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/seqdb_writer/unit_test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/seqdb_writer' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C gene_info_reader -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/gene_info_reader' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/gene_info_reader' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/gene_info_reader' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbienv.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/env_reg.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbienv.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/env_reg.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbienv.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/env_reg.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbithr_conf.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimtx.hpp:62, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbienv.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/env_reg.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/gene_info_reader' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=GENEINFO -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=GENEINFO -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=GENEINFO -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libgene_info.so .libgene_info.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libgene_info.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC gene_info.o gene_info_reader.o file_utils.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libgene_info.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libgene_info.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libgene_info.so ln -f .gene_info.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.gene_info.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/gene_info_reader' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C demo -w all_r || exit 5 make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/gene_info_reader/demo' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp: In member function ‘virtual void CReadFilesApp::Init()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:106:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 106 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/gene_info_reader/demo' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=gene_info_reader /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 gene_info_reader_app.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lgene_info -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -llmdb -lpthread -lm -lpthread -o gene_info_reader /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f gene_info_reader /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f gene_info_reader /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/gene_info_reader make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/gene_info_reader/demo' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/gene_info_reader/demo' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C unit_test -w all_r || exit 5 make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/gene_info_reader/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/gene_info_reader/unit_test' make[6]: Nothing to be done for 'mark-as-disabled_r'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/gene_info_reader/unit_test' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/gene_info_reader/unit_test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/gene_info_reader' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C gene_info_writer -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/gene_info_writer' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/gene_info_writer' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C services -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/services' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/services TMPL=blast_services -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/services' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/services' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/services TMPL=blast_services -w all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/services' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/services/blast_services.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libblast_services.so .libblast_services.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libblast_services.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC blast_services.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxnetblastcli -lxnetblast -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libblast_services.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libblast_services.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libblast_services.so ln -f .blast_services.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.blast_services.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/services' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C unit_test -w all_r || exit 5 make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/services/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/services/unit_test' make[6]: Nothing to be done for 'mark-as-disabled_r'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/services/unit_test' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/services/unit_test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/services' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C blastdb_format -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/blastdb_format' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/blastdb_format' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/blastdb_format' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { | ^~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { | ^~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { | ^~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { | ^~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:49:74: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] 49 | CSeqFormatterConfig config /* = CSeqFormatterConfig() */) | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { | ^~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:270:72: warning: ‘CSeqFormatterConfig’ is deprecated [-Wdeprecated-declarations] 270 | void CSeqFormatter::DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config) | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { | ^~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/blastdb_format' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libblastdb_format.so .libblastdb_format.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libblastdb_format.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libblastdb_format.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libblastdb_format.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libblastdb_format.so ln -f .blastdb_format.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.blastdb_format.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/blastdb_format' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C unit_test -w all_r || exit 5 make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/blastdb_format/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/blastdb_format/unit_test' make[6]: Nothing to be done for 'mark-as-disabled_r'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/blastdb_format/unit_test' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/blastdb_format/unit_test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast/blastdb_format' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/blast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C lds2 -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/lds2' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/lds2' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C pubseq_gateway -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/pubseq_gateway' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/diag/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/diag/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/diag/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build diag/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/pubseq_gateway/diag/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/cassandra/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build cassandra/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/pubseq_gateway/cassandra/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/protobuf/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build protobuf/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/pubseq_gateway/protobuf/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/cache/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build cache/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/pubseq_gateway/cache/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C diag -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/pubseq_gateway/diag' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/pubseq_gateway/diag' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C cassandra -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/pubseq_gateway/cassandra' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/pubseq_gateway/cassandra' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C client -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/pubseq_gateway/client' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/pubseq_gateway/client' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/pubseq_gateway/client' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/client TMPL=psg_client -w all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/pubseq_gateway/client' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client.cpp -o psg_client.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp -o psg_client_transport.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libpsg_client.so .libpsg_client.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libpsg_client.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC psg_client.o psg_client_transport.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxconnserv /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libpsg_client.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libpsg_client.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libpsg_client.so ln -f .psg_client.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.psg_client.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/pubseq_gateway/client' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C test -w all_r || exit 5 make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/pubseq_gateway/client/test' make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/pubseq_gateway/client/test' make[6]: *** No rule to make target '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/pubseq_gateway/client/test' NOTE: skipping project "test_psg_client_impl" due to unmet requirements make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/pubseq_gateway/client/test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/pubseq_gateway/client' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C protobuf -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/pubseq_gateway/protobuf' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/pubseq_gateway/protobuf' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C cache -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/pubseq_gateway/cache' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/pubseq_gateway/cache' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/pubseq_gateway' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C data_loaders -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/lds2/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/lds2/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/lds2/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build lds2/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/lds2/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/patcher/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/patcher/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/patcher/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build patcher/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/patcher/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/asn_cache/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build asn_cache/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/asn_cache/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/cdd/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/cdd/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/cdd/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build cdd/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/cdd/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C genbank -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank' make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/pubseq/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build pubseq/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/pubseq/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/pubseq2/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build pubseq2/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/pubseq2/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/test/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w export-headers make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank' make[6]: Nothing to be done for 'export-headers'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w export-headers make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank' make[6]: Nothing to be done for 'export-headers'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 154 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp:31: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:32, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp:31: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:32, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:32, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 154 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:32, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp:31: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp:31: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp:32: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp:32: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 154 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaderIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/rwstream.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/rwstream.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/rwstream.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 154 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/rwstream.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp: In static member function ‘static ncbi::CObjectIStream* ncbi::objects::CProcessor_ID2::x_OpenDataStream(const ncbi::objects::CID2_Reply_Data&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:2171:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2171 | auto_ptr reader(new COSSReader(data.GetData())); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/rwstream.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:2172:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2172 | auto_ptr stream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/rwstream.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:2195:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2195 | auto_ptr in; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/rwstream.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp: In static member function ‘static void ncbi::objects::CProcessor_ID2::x_ReadData(const ncbi::objects::CID2_Reply_Data&, const ncbi::CObjectInfo&, size_t&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:2205:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2205 | auto_ptr in(x_OpenDataStream(data)); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/rwstream.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp: In static member function ‘static void ncbi::objects::CProcessor_ID2::DumpDataAsText(const ncbi::objects::CID2_Reply_Data&, ncbi::CNcbiOstream&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:2240:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2240 | auto_ptr in(x_OpenDataStream(data)); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/rwstream.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:2241:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2241 | auto_ptr out(CObjectOStream::Open(eSerial_AsnText, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/rwstream.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/processors.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 154 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp: In constructor ‘ncbi::objects::CBlob_id::CBlob_id(ncbi::CTempString)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp:51:12: warning: catching polymorphic type ‘class ncbi::CStringException’ by value [-Wcatch-value=] 51 | catch (CStringException) { | ^~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processors.hpp:32, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processors.hpp:32, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 154 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:32: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:32: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 154 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 154 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ s/genbank/processors.cpp -o processors.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libncbi_xreader.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libncbi_xreader.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libncbi_xreader.a ln -f .ncbi_xreader-static.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.ncbi_xreader-static.dep /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libncbi_xreader.so .libncbi_xreader.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libncbi_xreader.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC dispatcher.o reader.o writer.o processors.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libncbi_xreader.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libncbi_xreader.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libncbi_xreader.so ln -f .ncbi_xreader.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.ncbi_xreader.dep make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 154 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/gbnative.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 154 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp: In member function ‘void ncbi::objects::CGBDataLoader_Native::x_CreateDriver(const ncbi::objects::CGBLoaderParams&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp:290:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 290 | auto_ptr app_params; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/gbload_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbnative.cpp -o gbnative.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader.cpp -o psg_loader.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ ders/genbank/psg_loader_impl.cpp -o psg_loader_impl.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libncbi_xloader_genbank.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libncbi_xloader_genbank.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libncbi_xloader_genbank.a ln -f .ncbi_xloader_genbank-static.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.ncbi_xloader_genbank-static.dep /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libncbi_xloader_genbank.so .libncbi_xloader_genbank.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libncbi_xloader_genbank.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lncbi_xreader -lpsg_client -lxconnserv -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libncbi_xloader_genbank.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libncbi_xloader_genbank.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libncbi_xloader_genbank.so ln -f .ncbi_xloader_genbank.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.ncbi_xloader_genbank.dep make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C cache -w all_r || exit 5 make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/cache' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w export-headers make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/cache' make[6]: Nothing to be done for 'export-headers'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/cache' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:32, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:32, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:32, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 154 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:32, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp: In function ‘ncbi::objects::SCacheInfo::TParams* ncbi::objects::GetCacheParams(const TParams*, ncbi::objects::SCacheInfo::EReaderOrWriter, ncbi::objects::SCacheInfo::EIdOrBlob)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:1647:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1647 | auto_ptr section | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:32, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp: In static member function ‘static ncbi::ICache* ncbi::objects::SCacheInfo::CreateCache(const TParams*, ncbi::objects::SCacheInfo::EReaderOrWriter, ncbi::objects::SCacheInfo::EIdOrBlob)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:1676:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1676 | auto_ptr cache_params | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:32, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp: In member function ‘virtual void ncbi::objects::CCacheReader::InitializeCache(ncbi::objects::CReaderCacheManager&, const TPluginManagerParamTree*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:1696:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1696 | auto_ptr id_params | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:32, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:1698:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1698 | auto_ptr blob_params | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:32, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 154 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp: In member function ‘virtual void ncbi::objects::CCacheWriter::InitializeCache(ncbi::objects::CReaderCacheManager&, const TPluginManagerParamTree*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:66:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 66 | auto_ptr id_params | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:68:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 68 | auto_ptr blob_params | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp: In member function ‘void ncbi::objects::CCacheWriter::WriteSeq_ids(const string&, const ncbi::objects::CLoadLockSeqIds&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:336:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 336 | auto_ptr writer | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp: At global scope: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:532:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 532 | auto_ptr m_Writer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:533:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 533 | auto_ptr m_Stream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/writer.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/cache' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libncbi_xreader_cache.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libncbi_xreader_cache.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libncbi_xreader_cache.a ln -f .ncbi_xreader_cache-static.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.ncbi_xreader_cache-static.dep /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libncbi_xreader_cache.so .libncbi_xreader_cache.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libncbi_xreader_cache.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC reader_cache.o writer_cache.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lncbi_xreader -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libncbi_xreader_cache.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libncbi_xreader_cache.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libncbi_xreader_cache.so ln -f .ncbi_xreader_cache.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.ncbi_xreader_cache.dep make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/cache' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/cache' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C pubseq -w all_r || exit 5 make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/pubseq' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/pubseq' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C id2 -w all_r || exit 5 make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/id2' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w export-headers make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/id2' make[6]: Nothing to be done for 'export-headers'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/id2' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 154 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/id2' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp ar cr libncbi_xreader_id2.a reader_id2.o /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libncbi_xreader_id2.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libncbi_xreader_id2.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libncbi_xreader_id2.a ln -f .ncbi_xreader_id2-static.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.ncbi_xreader_id2-static.dep /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libncbi_xreader_id2.so .libncbi_xreader_id2.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libncbi_xreader_id2.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC reader_id2.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libncbi_xreader_id2.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libncbi_xreader_id2.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libncbi_xreader_id2.so ln -f .ncbi_xreader_id2.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.ncbi_xreader_id2.dep make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/id2' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/id2' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C id1 -w all_r || exit 5 make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/id1' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w export-headers make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/id1' make[6]: Nothing to be done for 'export-headers'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/id1' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/id1/reader_id1.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/id1/reader_id1.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 154 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/id1' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -I/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/include -I/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp ar cr libncbi_xreader_id1.a reader_id1.o /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libncbi_xreader_id1.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libncbi_xreader_id1.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libncbi_xreader_id1.a ln -f .ncbi_xreader_id1-static.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.ncbi_xreader_id1-static.dep /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libncbi_xreader_id1.so .libncbi_xreader_id1.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libncbi_xreader_id1.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC reader_id1.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libncbi_xreader_id1.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libncbi_xreader_id1.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libncbi_xreader_id1.so ln -f .ncbi_xreader_id1.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.ncbi_xreader_id1.dep make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/id1' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/id1' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C pubseq2 -w all_r || exit 5 make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/pubseq2' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/pubseq2' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C gicache -w all_r || exit 5 make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/gicache' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -w export-headers make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/gicache' make[6]: Nothing to be done for 'export-headers'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/gicache' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache TMPL=ncbi_xreader_gicache -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/gicache/reader_gicache.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/data_source.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/gicache/reader_gicache.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 154 | auto_ptr m_Indices; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_param.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function ‘x_DataToGiData’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:289:14: warning: unused variable ‘logmsg’ [-Wunused-variable] 289 | char logmsg[256]; | ^~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function ‘GICache_LoadAdd’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:635:9: warning: unused variable ‘acc_len’ [-Wunused-variable] 635 | int acc_len; | ^~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function ‘GICache_SetMeta’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:25: warning: unused variable ‘stime’ [-Wunused-variable] 833 | char meta[512], stime[128]; | ^~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:833:14: warning: unused variable ‘meta’ [-Wunused-variable] 833 | char meta[512], stime[128]; | ^~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c: In function ‘GICache_GetAccFreqTab’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c:984:25: warning: unused variable ‘gi_len’ [-Wunused-variable] 984 | int64_t gi_len = 0; | ^~~~~~ make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/gicache' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp -o reader_gicache.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/genbank/gicache/gicache.c -o gicache.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libncbi_xreader_gicache.a .libncbi_xreader_gicache.a.stamp ar cr libncbi_xreader_gicache.a reader_gicache.o gicache.o /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libncbi_xreader_gicache.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libncbi_xreader_gicache.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libncbi_xreader_gicache.a ln -f .ncbi_xreader_gicache-static.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.ncbi_xreader_gicache-static.dep /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libncbi_xreader_gicache.so .libncbi_xreader_gicache.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libncbi_xreader_gicache.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC reader_gicache.o gicache.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lncbi_xreader -llmdb -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libncbi_xreader_gicache.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libncbi_xreader_gicache.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libncbi_xreader_gicache.so ln -f .ncbi_xreader_gicache.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.ncbi_xreader_gicache.dep make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/gicache' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/gicache' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C test -w all_r || exit 5 make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/test' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank/test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/genbank' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C lds2 -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/lds2' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/lds2' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C blastdb -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/blastdb' make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/blastdb' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb/unit_test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build unit_test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/blastdb/unit_test/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w export-headers make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/blastdb' make[6]: Nothing to be done for 'export-headers'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/blastdb' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w export-headers make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/blastdb' make[6]: Nothing to be done for 'export-headers'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/blastdb' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/blastdb' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libncbi_xloader_blastdb.so .libncbi_xloader_blastdb.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libncbi_xloader_blastdb.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC bdbloader.o cached_sequence.o local_blastdb_adapter.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lseqdb -llmdb -lpthread -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libncbi_xloader_blastdb.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libncbi_xloader_blastdb.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libncbi_xloader_blastdb.so ln -f .ncbi_xloader_blastdb.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.ncbi_xloader_blastdb.dep make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/blastdb' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/blastdb' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libncbi_xloader_blastdb_rmt.so .libncbi_xloader_blastdb_rmt.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libncbi_xloader_blastdb_rmt.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC bdbloader_rmt.o remote_blastdb_adapter.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lblast_services -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libncbi_xloader_blastdb_rmt.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libncbi_xloader_blastdb_rmt.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libncbi_xloader_blastdb_rmt.so ln -f .ncbi_xloader_blastdb_rmt.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.ncbi_xloader_blastdb_rmt.dep make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/blastdb' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/blastdb' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C unit_test -w all_r || exit 5 make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/blastdb/unit_test' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/blastdb/unit_test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/blastdb' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C patcher -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/patcher' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/patcher' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C asn_cache -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/asn_cache' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/asn_cache' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C cdd -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/cdd' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders/cdd' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/data_loaders' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C simple -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/simple' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/simple TMPL=xobjsimple -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/simple' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/simple' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/simple TMPL=xobjsimple -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/simple/simple_om.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/simple/simple_om.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/simple/simple_om.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/simple/simple_om.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/simple/simple_om.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/simple/simple_om.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/simple/simple_om.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/simple/simple_om.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/simple/simple_om.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/simple/simple_om.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/simple/simple_om.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/simple/simple_om.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/simple/simple_om.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/simple/simple_om.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/seq_id_handle.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/simple/simple_om.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/simple/simple_om.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/simple' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/simple/simple_om.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/simple/simple_om.cpp -o simple_om.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxobjsimple.so .libxobjsimple.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxobjsimple.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC simple_om.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxobjsimple.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxobjsimple.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxobjsimple.so ln -f .xobjsimple.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xobjsimple.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/simple' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/simple' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C alnmgr -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/alnmgr' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/demo/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/demo/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/demo/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build demo/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/alnmgr/demo/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/unit_test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build unit_test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/alnmgr/unit_test/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr TMPL=alnmgr -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/alnmgr' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/alnmgr' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr TMPL=alnmgr -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/seqid_comp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/seqids_extractor.hpp:56, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_tests.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_stats.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_builders.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_builders.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_builders.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_builders.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/seqid_comp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/seqids_extractor.hpp:56, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_tests.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_stats.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_builders.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_builders.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_builders.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_builders.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/seqid_comp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/seqids_extractor.hpp:56, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_tests.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_stats.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_builders.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_builders.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_builders.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_builders.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/alnmgr' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_container.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alntext.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/pairwise_aln.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvec.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnseq.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmix.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmap.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alndiag.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_seqid.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_builders.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/seqid_comp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/seqids_extractor.hpp:56, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_tests.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_stats.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_converters.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/seqid_comp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/seqids_extractor.hpp:56, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_tests.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_stats.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_converters.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/seqid_comp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/seqids_extractor.hpp:56, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_tests.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_stats.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_converters.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_serial.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/pairwise_aln.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_serial.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_serial.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/pairwise_aln.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_serial.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_serial.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/pairwise_aln.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_serial.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmap.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmap.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmap.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmap.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmap.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmap.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmap.cpp: In member function ‘ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ncbi::objects::CAlnMap::ESegmentTrimFlag)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmap.cpp:1472:35: warning: comparison of integer expressions of different signedness: ‘ncbi::objects::CAlnMap::TNumrow’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1472 | for (TNumrow row = 0; row < selected_rows.size(); row++) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 216 | auto_ptr m_Starts; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp: In static member function ‘static bool ncbi::objects::CAlnMixMatches::x_CompareChainScores(const ncbi::CRef&, const ncbi::CRef&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:76:55: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 76 | match1->m_ChainScore == match2->m_ChainScore && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 77 | match1->m_Score > match2->m_Score || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp: In member function ‘void ncbi::objects::CAlnMixMatches::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixMatches::TAddFlags)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:192:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 192 | (aln_seq1->m_StrandScore > 0 && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 193 | strand1 == eNa_strand_minus || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:196:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 196 | aln_seq2->m_StrandScore > 0 && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 197 | strand2 == eNa_strand_minus || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp:198:59: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 198 | aln_seq2->m_StrandScore < 0 && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 199 | strand2 != eNa_strand_minus)) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ bi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_generators.cpp -o aln_generators.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmerger.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmerger.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmerger.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmerger.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmerger.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmerger.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmerger.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 216 | auto_ptr m_Starts; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmerger.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp: In member function ‘void ncbi::objects::CAlnMixMerger::x_CreateDenseg()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp:1210:44: warning: comparison of integer expressions of different signedness: ‘const unsigned int’ and ‘int’ [-Wsign-compare] 1210 | if (start_its_i->second->first != -1) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmix.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmix.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmix.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmix.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmix.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmix.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmix.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmix.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmix.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmix.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmix.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmix.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmix.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmix.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 216 | auto_ptr m_Starts; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Seq_align_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Seq_align.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmix.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmix.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnpos_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnpos_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnpos_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnpos_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnpos_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnpos_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 216 | auto_ptr m_Starts; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnsegments.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp: In member function ‘void ncbi::objects::CAlnMixSegments::Build(bool, bool, bool)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:193:52: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 193 | if (row->m_PositiveStrand && | ~~~~~~~~~~~~~~~~~~~~~~~^~ 194 | curr_row_start > | ~~~~~~~~~~~~~~~~ 195 | row_start || | ~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp: In member function ‘void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 311 | if (plus && prev_start_plus_len < start || | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnseq.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnseq.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnseq.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnseq.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnseq.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnseq.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnseq.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 216 | auto_ptr m_Starts; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnseq.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnseq.cpp: In member function ‘void ncbi::objects::CAlnMixSequences::Add(const ncbi::objects::CDense_seg&, ncbi::objects::CAlnMixSequences::TAddFlags)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnseq.cpp:154:33: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 154 | if (width == 1 && aln_seq->m_IsAA != true || | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvec.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvec.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvec.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvec.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvec.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvec.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec_iterator.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec_iterator.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec_iterator.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function ‘void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 136 | if (left_seg < 0 || seg > right_seg && right_seg > 0) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function ‘void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, ncbi::objects::CAlnVecPrinter::EAlgorithm)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 300 | if (left_seg < 0 || seg > right_seg && right_seg > 0) { | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function ‘std::string& ncbi::CSparseAln::GetAlnSeqString(ncbi::IAlnExplorer::TNumrow, std::string&, const TSignedRange&, bool) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp:702:46: warning: comparison of integer expressions of different signedness: ‘ncbi::COpenRange::position_type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 702 | if (translate && aln_range.GetLength() >= trim_from + trim_to) { | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/sparse_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/sparse_ci.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/sparse_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/sparse_ci.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/sparse_aln.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/sparse_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/sparse_ci.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alntext.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alntext.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alntext.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alntext.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/seq_loc_util.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alntext.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alntext.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/seq_loc_util.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alntext.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alntext.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/seq_loc_util.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alntext.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alntext.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alntext.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alntext.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alntext.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alntext.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alntext.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alntext.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/score_builder_base.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/score_builder_base.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/score_builder_base.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:57: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/score_builder_base.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:57: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/score_builder_base.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:57: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/score_builder_base.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:57: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/score_builder_base.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:57: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/score_builder_base.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ nmgr/pairwise_aln.cpp -o pairwise_aln.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/alnmgr/aln_container.cpp -o aln_container.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxalnmgr.so .libxalnmgr.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxalnmgr.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o aln_container.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxobjutil -ltables -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxalnmgr.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxalnmgr.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxalnmgr.so ln -f .xalnmgr.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xalnmgr.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/alnmgr' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C demo -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/alnmgr/demo' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/alnmgr/demo' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C unit_test -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/alnmgr/unit_test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/alnmgr/unit_test' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/alnmgr' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C cddalignview -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/cddalignview' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/cddalignview' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C test -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/test' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/test' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C manip -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/manip' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/manip' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C edit -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/edit' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/unit_test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/unit_test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/unit_test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build unit_test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/edit/unit_test/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit TMPL=edit -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/edit' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/edit' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit TMPL=edit -w all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/edit' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_edit.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_object_description.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/external_annots.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gap_trim.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/publication_edit.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/parse_text_options.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/remote_updater.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/rna_edit.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/source_edit.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gaps_edit.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/mail_report.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/loc_edit.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/cds_fix.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gb_block_field.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_desc_field.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/struc_comm_field.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/dblink_field.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seqid_guesser.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/string_constraint.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/apply_object.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/field_handler.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/promote.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gene_utils.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSEIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gene_utils.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gene_utils.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gene_utils.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gene_utils.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gene_utils.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gene_utils.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gene_utils.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gene_utils.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gene_utils.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gene_utils.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gene_utils.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gene_utils.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gene_utils.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gene_utils.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gene_utils.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gene_utils.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat_macros.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/misc/sequence_macros.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat_macros.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/misc/sequence_macros.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/align_ci.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/align_ci.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/align_ci.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:58: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:58: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:58: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In member function ‘void ncbi::objects::edit::{anonymous}::CSeqdescSortMap::Init()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:172:39: warning: array subscript has type ‘char’ [-Wchar-subscripts] 172 | while (descr_insert_order[index] != 0) | ^~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:174:40: warning: array subscript has type ‘char’ [-Wchar-subscripts] 174 | if (descr_insert_order[index] >= size()) | ^~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:174:47: warning: comparison of integer expressions of different signedness: ‘char’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 174 | if (descr_insert_order[index] >= size()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:175:47: warning: array subscript has type ‘char’ [-Wchar-subscripts] 175 | resize(descr_insert_order[index], kMax_Char); | ^~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:176:39: warning: array subscript has type ‘char’ [-Wchar-subscripts] 176 | at(descr_insert_order[index]) = index; | ^~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function ‘void ncbi::objects::edit::ConvertRawToDeltaByNs(ncbi::objects::CSeq_inst&, size_t, int, size_t, int, bool, int, int, int)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1823:71: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1823 | if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { | ~~~~~~^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1825:74: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1825 | } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { | ~~~~~~^~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1848:63: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1848 | if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { | ~~~~~~^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:1850:66: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1850 | } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { | ~~~~~~^~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function ‘void ncbi::objects::edit::TrimSeqData(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2431:16: warning: enumeration value ‘eSeqSubMap’ not handled in switch [-Wswitch] 2431 | switch (seqmap_ci.GetType()) { | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2431:16: warning: enumeration value ‘eSeqRef’ not handled in switch [-Wswitch] /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2431:16: warning: enumeration value ‘eSeqEnd’ not handled in switch [-Wswitch] /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2431:16: warning: enumeration value ‘eSeqChunk’ not handled in switch [-Wswitch] /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2431:16: warning: enumeration value ‘eSeqLiteral’ not handled in switch [-Wswitch] /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function ‘bool ncbi::objects::edit::s_FindSegment(const ncbi::objects::CDense_seg&, ncbi::objects::CDense_seg_Base::TDim, ncbi::TSeqPos, ncbi::objects::CDense_seg_Base::TNumseg&, ncbi::TSeqPos&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2787:21: warning: comparison of integer expressions of different signedness: ‘ncbi::TSeqPos’ {aka ‘unsigned int’} and ‘ncbi::TSignedSeqPos’ {aka ‘int’} [-Wsign-compare] 2787 | if (pos >= start && pos < start + len) { | ~~~~^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2787:39: warning: comparison of integer expressions of different signedness: ‘ncbi::TSeqPos’ {aka ‘unsigned int’} and ‘ncbi::TSignedSeqPos’ {aka ‘int’} [-Wsign-compare] 2787 | if (pos >= start && pos < start + len) { | ~~~~^~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp: In function ‘void ncbi::objects::edit::TrimSeqAlign(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2991:32: warning: comparison of integer expressions of different signedness: ‘ncbi::TSignedSeqPos’ {aka ‘int’} and ‘ncbi::TSeqPos’ {aka ‘unsigned int’} [-Wsign-compare] 2991 | else if (seg_start < cut_from) { | ~~~~~~~~~~^~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp:2994:32: warning: comparison of integer expressions of different signedness: ‘ncbi::TSignedSeqPos’ {aka ‘int’} and ‘ncbi::TSeqPos’ {aka ‘unsigned int’} [-Wsign-compare] 2994 | else if (seg_start >= cut_from && | ~~~~~~~~~~^~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/promote.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/promote.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/promote.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/promote.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/promote.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/promote.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/promote.cpp:52: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/promote.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/promote.cpp:52: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/promote.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/promote.cpp:52: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/promote.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/promote.cpp:52: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/promote.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/promote.cpp:52: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/promote.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/promote.cpp: In member function ‘void ncbi::objects::edit::CPromote::x_PromoteCdregion(ncbi::objects::CSeq_feat&, ncbi::objects::edit::CPromote::TRnaMap*) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/promote.cpp:224:51: warning: ‘static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::string&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool, bool*, ncbi::objects::CCdregion_translate::ETranslationLengthProblemOptions)’ is deprecated [-Wdeprecated-declarations] 224 | CCdregion_translate::TranslateCdregion(data, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 225 | feat, | ~~~~~ 226 | x_Scope(), | ~~~~~~~~~~ 227 | include_stop, | ~~~~~~~~~~~~~ 228 | remove_trailingX); | ~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/promote.cpp:52: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:936:17: note: declared here 936 | static void TranslateCdregion(string& prot, | ^~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/autodef_with_tax.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/autodef_with_tax.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/autodef_with_tax.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/autodef_with_tax.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/autodef_with_tax.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/autodef_with_tax.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/autodef_with_tax.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/autodef_with_tax.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/autodef.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/autodef_with_tax.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/autodef_with_tax.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/field_handler.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/field_handler.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/field_handler.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/field_handler.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/field_handler.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/field_handler.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/field_handler.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/field_handler.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/field_handler.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/field_handler.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/field_handler.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/field_handler.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/field_handler.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/field_handler.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/field_handler.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/field_handler.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/apply_object.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/apply_object.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/apply_object.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/apply_object.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/apply_object.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/apply_object.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/string_constraint.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/string_constraint.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/string_constraint.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/string_constraint.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/string_constraint.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/string_constraint.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/string_constraint.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/string_constraint.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/string_constraint.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Dbtag_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Dbtag.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Dbtag_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Dbtag.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Dbtag_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Dbtag.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seqid_guesser.cpp: In constructor ‘ncbi::objects::edit::CSeqIdGuesser::CSeqIdGuesser(ncbi::objects::CSeq_entry_Handle)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:92:48: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] 92 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Dbtag_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Dbtag.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:5308:11: note: declared here 5308 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, | ^~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seqid_guesser.cpp: In static member function ‘static std::vector > ncbi::objects::edit::CSeqIdGuesser::GetIdStrings(ncbi::objects::CBioseq_Handle)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:171:44: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] 171 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Dbtag_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Dbtag.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seqid_guesser.cpp:31: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:5308:11: note: declared here 5308 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, | ^~~~ T_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/promote.cpp -o promote.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/autodef_with_tax.cpp -o autodef_with_tax.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/field_handler.cpp -o field_handler.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/apply_object.cpp -o apply_object.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seqid_guesser.cpp -o seqid_guesser.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFIIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/dblink_field.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/dblink_field.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Dbtag_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Dbtag.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/dblink_field.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/dblink_field.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/dblink_field.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Dbtag_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Dbtag.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/dblink_field.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/dblink_field.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/dblink_field.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Dbtag_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Dbtag.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/dblink_field.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/dblink_field.cpp: In static member function ‘static ncbi::objects::edit::CDBLinkField::EDBLinkFieldType ncbi::objects::edit::CDBLinkField::GetTypeForLabel(std::string)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/dblink_field.cpp:283:17: warning: variable ‘normal’ set but not used [-Wunused-but-set-variable] 283 | CTempString normal = GetNormalizedDBLinkFieldName(label); | ^~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/struc_comm_field.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/struc_comm_field.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/struc_comm_field.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/struc_comm_field.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/struc_comm_field.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/struc_comm_field.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/struc_comm_field.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/struc_comm_field.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/struc_comm_field.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/struc_comm_field.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/struc_comm_field.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/text_desc_field.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_desc_field.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_desc_field.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/text_desc_field.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_desc_field.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_desc_field.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/text_desc_field.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_desc_field.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_desc_field.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/gb_block_field.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gb_block_field.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gb_block_field.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/gb_block_field.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gb_block_field.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gb_block_field.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/gb_block_field.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gb_block_field.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gb_block_field.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/seq_loc_util.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/RNA_ref_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/RNA_ref.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/seq_loc_util.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/RNA_ref_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/RNA_ref.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/seq_loc_util.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/RNA_ref_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/RNA_ref.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp: In function ‘void ncbi::{anonymous}::xLinkCDSmRNAbyLabelAndLocation(ncbi::objects::CSeq_annot_Base::C_Data::TFtable&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp:135:13: warning: unused variable ‘best_fit_size’ [-Wunused-variable] 135 | int best_fit_size = -1; | ^~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/cds_fix.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/cds_fix.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/cds_fix.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/cds_fix.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/cds_fix.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/cds_fix.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/cds_fix.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/cds_fix.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/cds_fix.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat_macros.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/cds_fix.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/cds_fix.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat_macros.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/cds_fix.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/cds_fix.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/cds_fix.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/cds_fix.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/cds_fix.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/cds_fix.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/cds_fix.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/cds_fix.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/cds_fix.cpp: In function ‘bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/cds_fix.cpp:457:57: warning: ‘bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)’ is deprecated [-Wdeprecated-declarations] 457 | any_change |= AdjustProteinMolInfoToMatchCDS((*it)->SetMolinfo(), cds); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here 366 | bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/cds_fix.cpp:463:39: warning: ‘bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)’ is deprecated [-Wdeprecated-declarations] 463 | AdjustProteinMolInfoToMatchCDS(new_molinfo_desc->SetMolinfo(), cds); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here 366 | bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/loc_edit.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/loc_edit.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/loc_edit.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/loc_edit.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/loc_edit.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/loc_edit.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/loc_edit.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/loc_edit.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/loc_edit.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/loc_edit.cpp:57: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/loc_edit.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/loc_edit.cpp:57: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/loc_edit.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/loc_edit.cpp:57: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/loc_edit.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/loc_edit.cpp:57: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/loc_edit.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/loc_edit.cpp:57: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/loc_edit.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/mail_report.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/mail_report.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/mail_report.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/mail_report.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/mail_report.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/mail_report.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/mail_report.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/mail_report.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/mail_report.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/mail_report.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/mail_report.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/mail_report.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/mail_report.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/mail_report.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/mail_report.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/mail_report.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/mail_report.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/mail_report.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/mail_report.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/mail_report.cpp: In function ‘void ncbi::objects::edit::MakeMailReportPostReport(ncbi::objects::CSeq_table&, ncbi::objects::CScope&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/mail_report.cpp:103:13: warning: unused variable ‘taxid’ [-Wunused-variable] 103 | int taxid = 0; | ^~~~~ LE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/dblink_field.cpp -o dblink_field.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/struc_comm_field.cpp -o struc_comm_field.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_desc_field.cpp -o text_desc_field.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gb_block_field.cpp -o gb_block_field.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/mail_report.cpp -o mail_report.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANTIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Object_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Object_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Object_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Object_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Object_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Object_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Object_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Object_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Object_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Object_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Object_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Object_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Object_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Object_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Object_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Object_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/feattable_edit.hpp: In constructor ‘ncbi::objects::edit::CFeatTableEdit::CFeatTableEdit(ncbi::objects::CSeq_annot&, const string&, unsigned int, unsigned int, ncbi::objects::IObjtoolsListener*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/feattable_edit.hpp:187:24: warning: ‘ncbi::objects::edit::CFeatTableEdit::mpMessageListener’ will be initialized after [-Wreorder] 187 | IObjtoolsListener* mpMessageListener; | ^~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/feattable_edit.hpp:92:18: warning: ‘unsigned int ncbi::objects::edit::CFeatTableEdit::mNextFeatId’ [-Wreorder] 92 | unsigned int mNextFeatId = 1; | ^~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp:114:1: warning: when initialized here [-Wreorder] 114 | CFeatTableEdit::CFeatTableEdit( | ^~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/feattable_edit.hpp:92:18: warning: ‘ncbi::objects::edit::CFeatTableEdit::mNextFeatId’ will be initialized after [-Wreorder] 92 | unsigned int mNextFeatId = 1; | ^~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/feattable_edit.hpp:91:18: warning: ‘unsigned int ncbi::objects::edit::CFeatTableEdit::mLocusTagNumber’ [-Wreorder] 91 | unsigned int mLocusTagNumber = 1; | ^~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp:114:1: warning: when initialized here [-Wreorder] 114 | CFeatTableEdit::CFeatTableEdit( | ^~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/feattable_edit.hpp:91:18: warning: ‘ncbi::objects::edit::CFeatTableEdit::mLocusTagNumber’ will be initialized after [-Wreorder] 91 | unsigned int mLocusTagNumber = 1; | ^~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/feattable_edit.hpp:90:12: warning: ‘std::string ncbi::objects::edit::CFeatTableEdit::mLocusTagPrefix’ [-Wreorder] 90 | string mLocusTagPrefix; | ^~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp:114:1: warning: when initialized here [-Wreorder] 114 | CFeatTableEdit::CFeatTableEdit( | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp: In function ‘void ncbi::objects::edit::s_AppendProtRefInfo(ncbi::objects::CProt_ref&, const ncbi::objects::CProt_ref&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp:1833:25: warning: loop variable ‘pDBtag’ creates a copy from type ‘const ncbi::CRef’ [-Wrange-loop-construct] 1833 | for (const auto pDBtag : other_ref.GetDb()) { | ^~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp:1833:25: note: use reference type to prevent copying 1833 | for (const auto pDBtag : other_ref.GetDb()) { | ^~~~~~ | & In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/source_edit.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/source_edit.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/source_edit.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/source_edit.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/source_edit.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/source_edit.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/source_edit.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/source_edit.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/source_edit.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/source_edit.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/source_edit.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/source_edit.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/source_edit.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/source_edit.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/source_edit.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/string_constraint.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/seqid_guesser.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/rna_edit.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/rna_edit.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/string_constraint.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/seqid_guesser.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/rna_edit.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/rna_edit.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/string_constraint.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/seqid_guesser.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/rna_edit.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/rna_edit.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/rna_edit.cpp: In member function ‘bool ncbi::objects::edit::CFindITSParser::IsLengthTooLarge(const string&, int, int, const std::vector&, const std::vector&, const std::vector&, int)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/rna_edit.cpp:261:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 261 | for (int j = i + 1; j < spans.size(); j++) | ~~^~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/itaxon3.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/taxon3.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/remote_updater.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Org_ref_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Org_ref.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/itaxon3.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/taxon3.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/remote_updater.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/itaxon3.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/taxon3.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/remote_updater.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Org_ref_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Org_ref.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/itaxon3.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/taxon3.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/remote_updater.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/remote_updater.cpp:59: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/remote_updater.hpp:107:4: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 107 | auto_ptr m_taxClient; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Org_ref_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Org_ref.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/itaxon3.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/taxon3.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/remote_updater.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/remote_updater.cpp:294:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 294 | auto_ptr m_taxon; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Org_ref_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Org_ref.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/itaxon3.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/taxon3.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/remote_updater.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/remote_updater.cpp:295:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 295 | auto_ptr m_cache; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Org_ref_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Org_ref.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/itaxon3.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon3/taxon3.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/remote_updater.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/remote_updater.cpp: In member function ‘void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(ncbi::objects::edit::CRemoteUpdater::FLogger, ncbi::objects::CSeq_entry_EditHandle&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/remote_updater.cpp:608:31: warning: ‘void ncbi::objects::edit::CRemoteUpdater::UpdateOrgFromTaxon(ncbi::objects::edit::CRemoteUpdater::FLogger, ncbi::objects::CSeqdesc&)’ is deprecated [-Wdeprecated-declarations] 608 | UpdateOrgFromTaxon(logger, (CSeqdesc&)*desc_it); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/remote_updater.cpp:298:6: note: declared here 298 | void CRemoteUpdater::UpdateOrgFromTaxon(FLogger logger, CSeqdesc& obj) | ^~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/parse_text_options.cpp: In function ‘ncbi::SIZE_TYPE ncbi::objects::edit::FindWithOptions(const string&, const string&, ncbi::SIZE_TYPE, bool, bool)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/parse_text_options.cpp:47:25: warning: ‘static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)’ is deprecated [-Wdeprecated-declarations] 47 | pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/parse_text_options.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/parse_text_options.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:5308:11: note: declared here 5308 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, | ^~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/gap_trim.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gap_trim.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gap_trim.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/gap_trim.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gap_trim.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gap_trim.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/gap_trim.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gap_trim.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gap_trim.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gap_trim.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gap_trim.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gap_trim.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gap_trim.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gap_trim.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gap_trim.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gap_trim.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gap_trim.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gap_trim.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gap_trim.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/source_edit.cpp -o source_edit.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/rna_edit.cpp -o rna_edit.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/publication_edit.cpp -o publication_edit.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/gap_trim.cpp -o gap_trim.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/external_annots.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/external_annots.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/external_annots.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/external_annots.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/external_annots.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/external_annots.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/external_annots.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/external_annots.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/external_annots.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/external_annots.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/external_annots.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/external_annots.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/seq_loc_util.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/seq_loc_util.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/seq_loc_util.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/feature_propagate.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/feature_propagate.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/feature_propagate.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/feature_propagate.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/edit/feature_propagate.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp: In member function ‘ncbi::TSignedSeqPos ncbi::objects::edit::CFeaturePropagator::SeqPosToAlignPos(ncbi::TSignedSeqPos, ncbi::objects::CDense_seg_Base::TDim, bool, bool&, bool&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp:274:19: warning: unused variable ‘length’ [-Wunused-variable] 274 | TSignedSeqPos length = bsh.GetBioseqLength(); | ^~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp: In member function ‘ncbi::TSignedSeqPos ncbi::objects::edit::CFeaturePropagator::AlignPosToSeqPos(ncbi::TSignedSeqPos, ncbi::objects::CDense_seg_Base::TDim, bool, bool&, bool&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp:373:31: warning: unused variable ‘len’ [-Wunused-variable] 373 | TSignedSeqPos len = denseg.GetLens()[seg]; | ^~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp:330:19: warning: unused variable ‘length’ [-Wunused-variable] 330 | TSignedSeqPos length = bsh.GetBioseqLength(); | ^~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp: In member function ‘bool ncbi::objects::edit::CFeaturePropagator::IsOrdered(const ncbi::objects::CSeq_loc&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp:471:25: warning: loop variable ‘it’ creates a copy from type ‘const ncbi::CRef’ [-Wrange-loop-construct] 471 | for (const auto it : loc.GetMix().Get()) | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp:471:25: note: use reference type to prevent copying 471 | for (const auto it : loc.GetMix().Get()) | ^~ | & /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp: In member function ‘ncbi::CRef ncbi::objects::edit::CFeaturePropagator::MakeOrdered(const ncbi::objects::CSeq_loc&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp:485:21: warning: loop variable ‘it’ creates a copy from type ‘const ncbi::CRef’ [-Wrange-loop-construct] 485 | for (const auto it : loc.GetMix().Get()) | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp:485:21: note: use reference type to prevent copying 485 | for (const auto it : loc.GetMix().Get()) | ^~ | & In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_object_description.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_object_description.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_object_description.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_object_description.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_object_description.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_object_description.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_object_description.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_object_description.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_object_description.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_object_description.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_object_description.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_object_description.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_object_description.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_object_description.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_object_description.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_object_description.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_object_description.cpp:336:15: warning: ‘std::string ncbi::objects::edit::GetTextObjectDescription(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const string&)’ defined but not used [-Wunused-function] 336 | static string GetTextObjectDescription(const CSeq_feat& seq_feat, CScope& scope, const string& product) | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_edit.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_edit.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_edit.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_edit.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_edit.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_edit.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/external_annots.cpp -o external_annots.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/feature_propagate.cpp -o feature_propagate.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/text_object_description.cpp -o text_object_description.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/edit/seq_edit.cpp -o seq_edit.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxobjedit.so .libxobjedit.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxobjedit.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC gene_utils.o seq_entry_edit.o promote.o autodef_with_tax.o field_handler.o apply_object.o string_constraint.o seqid_guesser.o dblink_field.o struc_comm_field.o text_desc_field.o gb_block_field.o link_cds_mrna.o cds_fix.o loc_edit.o mail_report.o feattable_edit.o gaps_edit.o source_edit.o rna_edit.o remote_updater.o parse_text_options.o publication_edit.o gap_trim.o external_annots.o feature_propagate.o text_object_description.o seq_edit.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxobjutil -ltaxon3 -lvalid -lmlacli -lxlogging -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxobjedit.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxobjedit.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxobjedit.so ln -f .xobjedit.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xobjedit.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/edit' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C unit_test -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/edit/unit_test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/edit/unit_test' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/edit' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C cleanup -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/cleanup' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/cleanup/test/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup TMPL=cleanup -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/cleanup' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/cleanup' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup TMPL=cleanup -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqset/Seq_entry.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqset/Seq_entry.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqset/Seq_entry.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqset/Seq_entry.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqset/Seq_entry.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqset/Seq_entry.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqset/Seq_entry.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqset/Seq_entry.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqset/Seq_entry.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqset/Seq_entry_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqset/Seq_entry.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat_macros.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/misc/sequence_macros.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat_macros.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/misc/sequence_macros.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup.cpp:58: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup.cpp:59: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup.cpp:59: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup.cpp:59: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup.cpp:59: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup.cpp:59: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup.cpp: In static member function ‘static bool ncbi::objects::CCleanup::x_HasShortIntron(const ncbi::objects::CSeq_loc&, size_t)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup.cpp:2889:68: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2889 | if (abs((long int)this_start - (long int)prev_end) < min_len) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup.cpp: In static member function ‘static bool ncbi::objects::CCleanup::DecodeXMLMarkChanged(std::string&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup.cpp:4168:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 4168 | idx < sizeof(transformations)/sizeof(transformations[0]); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup.cpp: In static member function ‘static bool ncbi::objects::CCleanup::ParseCodeBreak(const ncbi::objects::CSeq_feat&, ncbi::objects::CCdregion&, const ncbi::CTempString&, ncbi::objects::CScope&, ncbi::objects::IObjtoolsListener*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup.cpp:4512:38: warning: ‘static ncbi::CTempString ncbi::NStr::TruncateSpaces(ncbi::CTempString, ncbi::NStr::ETrunc)’ is deprecated [-Wdeprecated-declarations] 4512 | string pos = NStr::TruncateSpaces(str.substr(loc_pos, end_pos - loc_pos)); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:2269:24: note: declared here 2269 | static CTempString TruncateSpaces(const CTempString str, | ^~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/cleanup' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_message.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp: In static member function ‘static bool ncbi::objects::CCleanup::s_AddNumToUserField(ncbi::objects::CUser_field&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:369:53: warning: comparison of integer expressions of different signedness: ‘ncbi::objects::CUser_field_Base::TNum’ {aka ‘int’} and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 369 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetStrs().size()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:375:53: warning: comparison of integer expressions of different signedness: ‘ncbi::objects::CUser_field_Base::TNum’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 375 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetInts().size()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:381:53: warning: comparison of integer expressions of different signedness: ‘ncbi::objects::CUser_field_Base::TNum’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 381 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetReals().size()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp:387:53: warning: comparison of integer expressions of different signedness: ‘ncbi::objects::CUser_field_Base::TNum’ {aka ‘int’} and ‘std::vector*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 387 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetOss().size()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/cleanup/cleanup.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/cleanup/cleanup.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/cleanup/cleanup.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/cleanup/cleanup.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/cleanup/cleanup.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/cleanup/cleanup.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_utils.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat_macros.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/misc/sequence_macros.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_autoinit.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat_macros.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/misc/sequence_macros.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_autoinit.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_autoinit.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_autoinit.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_autoinit.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_autoinit.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_autoinit.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_autoinit.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp: In function ‘typename TMapType::const_iterator ncbi::objects::s_FindInMapAsPrefix(const string&, const TMapType&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:1187:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1187 | auto_ptr temp_str; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_autoinit.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp: In member function ‘void ncbi::objects::CNewCleanup_imp::x_RemoveFlankingQuotes(std::string&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:5850:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 5850 | for( ; first_pos <= last_pos ; ++first_pos, --last_pos ) { | ~~~~~~~~~~^~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:5864:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 5864 | if( first_pos > last_pos ) { | ~~~~~~~~~~^~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp: In member function ‘void ncbi::objects::CNewCleanup_imp::RnarefGenBC(ncbi::objects::CRNA_ref&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp:7113:10: warning: unused variable ‘changed’ [-Wunused-variable] 7113 | bool changed = false; | ^~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/cleanup/capitalization_string.hpp:32, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/cleanup/capitalization_string.hpp:32, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/cleanup/capitalization_string.hpp:32, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp: In function ‘void ncbi::objects::CapitalizeAfterApostrophe(std::string&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp:912:25: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 912 | if (rslt[0] != start) | ~~~~~~~~^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp: In function ‘void ncbi::objects::FixAffiliationShortWordsInElement(std::string&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp:951:29: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 951 | if (rslt[0] != start) | ~~~~~~~~^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp: In function ‘void ncbi::objects::FixOrdinalNumbers(std::string&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp:978:29: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 978 | if (rslt[0] != start) | ~~~~~~~~^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:32: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Feat_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Feat_id.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:32: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Feat_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Feat_id.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:32: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Feat_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Feat_id.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat_macros.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/misc/sequence_macros.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/cleanup/fix_feature_id.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Feat_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Feat_id.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat_macros.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/misc/sequence_macros.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/cleanup/fix_feature_id.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Feat_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/Feat_id.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ ET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/gene_qual_normalization.cpp -o gene_qual_normalization.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_user_object.cpp -o cleanup_user_object.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_author.cpp -o cleanup_author.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_pub.cpp -o cleanup_pub.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/capitalization_string.cpp -o capitalization_string.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/fix_feature_id.cpp -o fix_feature_id.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/cleanup/cleanup_message.cpp -o cleanup_message.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxcleanup.so .libxcleanup.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxcleanup.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/fxspvmsmypn6g74mx3dc58qmh16n90vj-pcre-8.45/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o gene_qual_normalization.o cleanup_user_object.o cleanup_author.o cleanup_pub.o newcleanupp.o capitalization_string.o fix_feature_id.o cleanup_message.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxregexp -L/gnu/store/fxspvmsmypn6g74mx3dc58qmh16n90vj-pcre-8.45/lib -lpcre /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxcleanup.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxcleanup.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxcleanup.so ln -f .xcleanup.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xcleanup.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/cleanup' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C test -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/cleanup/test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/cleanup/test' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/cleanup' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C format -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/format' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format TMPL=xformat -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/format' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/format' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format TMPL=xformat -w all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/format' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_qual_slots.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gene_finder.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/inst_info_map.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/html_anchor_item.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_iter.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/cigar_formatter.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sam_formatter.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_project_item.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gap_item.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/alignment_item.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_config.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gbseq_formatter.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_formatter.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_gather.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/origin_item.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ostream_text_ostream.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_ostream.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/format_item_ostream.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_formatter.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_formatter.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_generator.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_gather.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_gather.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/context.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/qualifiers.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_seqloc.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/accession_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/accession_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/accession_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/accession_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/accession_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/accession_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/accession_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/accession_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/accession_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/accession_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/accession_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/accession_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/accession_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/accession_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/accession_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/accession_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/accession_item.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/accession_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/accession_item.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/accession_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/basecount_item.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/basecount_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/basecount_item.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/basecount_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/basecount_item.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/basecount_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/basecount_item.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/basecount_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/basecount_item.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/basecount_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/basecount_item.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/basecount_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/basecount_item.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/basecount_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/basecount_item.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/basecount_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +-src/c++/src/objtools/format/tsa_item.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/wgs_item.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/version_item.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/source_item.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sequence_item.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/segment_item.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/reference_item.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/primary_item.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/locus_item.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/keywords_item.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ctrl_items.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_item.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/defline_item.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/dbsource_item.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/date_item.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/contig_item.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/comment_item.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/basecount_item.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/accession_item.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/accession_item.cpp -o accession_item.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/comment_item.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/comment_item.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/comment_item.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/comment_item.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/comment_item.cpp:58: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/comment_item.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/comment_item.cpp:58: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/comment_item.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/comment_item.cpp:58: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/comment_item.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/comment_item.cpp:58: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/comment_item.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/comment_item.cpp:58: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/comment_item.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/comment_item.cpp:58: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/comment_item.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/comment_item.cpp:63: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/comment_item.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/comment_item.cpp:63: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/comment_item.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/comment_item.cpp: In function ‘void ncbi::objects::s_GetAssemblyInfo(const ncbi::objects::CBioseqContext&, std::string&, const ncbi::objects::CUser_object&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/comment_item.cpp:374:16: warning: unused variable ‘is_html’ [-Wunused-variable] 374 | const bool is_html = ctx.Config().DoHTML(); | ^~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/contig_item.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/contig_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/contig_item.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/contig_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/contig_item.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/contig_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/contig_item.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/contig_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/contig_item.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/contig_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/contig_item.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/contig_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/contig_item.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/contig_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/contig_item.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/contig_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/date_item.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/date_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/date_item.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/date_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/date_item.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/date_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/date_item.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/date_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/date_item.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/date_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/date_item.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/date_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/date_item.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/date_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/date_item.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/date_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/dbsource_item.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/dbsource_item.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/dbsource_item.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/dbsource_item.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/dbsource_item.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/dbsource_item.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/dbsource_item.cpp:56: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/dbsource_item.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/dbsource_item.cpp:56: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/dbsource_item.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/dbsource_item.cpp:56: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/dbsource_item.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/dbsource_item.cpp:56: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/dbsource_item.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/dbsource_item.cpp:56: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/dbsource_item.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/dbsource_item.cpp:61: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/dbsource_item.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/dbsource_item.cpp:61: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/dbsource_item.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/defline_item.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/defline_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/defline_item.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/defline_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/defline_item.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/defline_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/defline_item.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/defline_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/defline_item.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/defline_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/defline_item.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/defline_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/defline_item.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/defline_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/defline_item.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/defline_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/defline_item.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/defline_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/defline_item.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/defline_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat_macros.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/misc/sequence_macros.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp:88: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp:44: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat_macros.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/misc/sequence_macros.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp:88: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp:44: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp:90: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp:44: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp:90: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp:44: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp:90: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp:44: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp:91: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp:44: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp:94: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp:44: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp:94: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp:44: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gene_finder.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp:108: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp:44: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gene_finder.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp:108: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp:44: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp:108: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gene_finder.hpp:113:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 113 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp:44: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp: In member function ‘void ncbi::objects::CFeatureItem::x_AddQualExceptions(ncbi::objects::CBioseqContext&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp:1412:28: warning: unused variable ‘cfg’ [-Wunused-variable] 1412 | const CFlatFileConfig& cfg = ctx.Config(); | ^~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp: In function ‘const string& ncbi::objects::s_AaName(int)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp:2108:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2108 | if ( idx > 0 && idx < ArraySize(s_TrnaList) ) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ctrl_items.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ctrl_items.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ctrl_items.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ctrl_items.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ctrl_items.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ctrl_items.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ctrl_items.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ctrl_items.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ctrl_items.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ctrl_items.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ctrl_items.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ctrl_items.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ctrl_items.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ctrl_items.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ctrl_items.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ctrl_items.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ctrl_items.cpp:58: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ctrl_items.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ctrl_items.cpp:58: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ctrl_items.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /ncbi-blast-2.11.0+-src/c++/src/objtools/format/comment_item.cpp -o comment_item.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/contig_item.cpp -o contig_item.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/date_item.cpp -o date_item.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/defline_item.cpp -o defline_item.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/feature_item.cpp -o feature_item.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_item.cpp -o genome_item.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/keywords_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/keywords_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/keywords_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/keywords_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/keywords_item.cpp:50: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/keywords_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/keywords_item.cpp:50: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/keywords_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/keywords_item.cpp:50: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/keywords_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/keywords_item.cpp:50: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/keywords_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/keywords_item.cpp:50: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/keywords_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/keywords_item.cpp:50: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/keywords_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/keywords_item.cpp: In member function ‘virtual void ncbi::objects::CKeywordsItem::x_GatherInfo(ncbi::objects::CBioseqContext&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/keywords_item.cpp:324:18: warning: catching polymorphic type ‘class ncbi::CException’ by value [-Wcatch-value=] 324 | } catch (CException) { | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/locus_item.cpp:50: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/locus_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/locus_item.cpp:50: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/locus_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/locus_item.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/locus_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/locus_item.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/locus_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/locus_item.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/locus_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/locus_item.cpp:59: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/locus_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/locus_item.cpp:59: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/locus_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/locus_item.cpp:59: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/locus_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/locus_item.cpp:65: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/locus_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/locus_item.cpp:65: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/locus_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/primary_item.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/primary_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/primary_item.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/primary_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/primary_item.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/primary_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/primary_item.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/primary_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/primary_item.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/primary_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/primary_item.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/primary_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/primary_item.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/primary_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/primary_item.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/primary_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/primary_item.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/primary_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/primary_item.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/primary_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/primary_item.cpp: In member function ‘void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/primary_item.cpp:220:63: warning: comparison of integer expressions of different signedness: ‘ncbi::TSeqPos’ {aka ‘unsigned int’} and ‘ncbi::TSignedSeqPos’ {aka ‘int’} [-Wsign-compare] 220 | if ( ctx.IsRefSeq() && last_stop > -1 && (this_start > (last_stop + 1)) ) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/primary_item.cpp:221:28: warning: comparison of integer expressions of different signedness: ‘ncbi::TSeqPos’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 221 | if (this_start < (15 + last_stop) ) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/reference_item.cpp:60: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/reference_item.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/reference_item.cpp:61: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/reference_item.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/reference_item.cpp:61: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/reference_item.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/reference_item.cpp:61: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/reference_item.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/reference_item.cpp:61: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/reference_item.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/reference_item.cpp:61: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/reference_item.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/reference_item.cpp:61: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/reference_item.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/reference_item.cpp:61: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/reference_item.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/reference_item.cpp:70: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/reference_item.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/reference_item.cpp:70: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/reference_item.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/reference_item.cpp: In member function ‘virtual void ncbi::objects::CReferenceItem::x_GatherInfo(ncbi::objects::CBioseqContext&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/reference_item.cpp:693:41: warning: unused variable ‘muid’ [-Wunused-variable] 693 | const TEntrezId muid = pub.GetMuid(); | ^~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/segment_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/segment_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/segment_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/segment_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/segment_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/segment_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/segment_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/segment_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/segment_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/segment_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/segment_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/segment_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/segment_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/segment_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/segment_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/segment_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sequence_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sequence_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sequence_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sequence_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sequence_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sequence_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sequence_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sequence_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sequence_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sequence_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sequence_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sequence_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sequence_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sequence_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sequence_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sequence_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sequence_item.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sequence_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sequence_item.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sequence_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/source_item.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/source_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/source_item.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/source_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/source_item.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/source_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/source_item.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/source_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/source_item.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/source_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/source_item.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/source_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/source_item.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/source_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/source_item.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/source_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/source_item.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/source_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/source_item.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/source_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/source_item.cpp: In member function ‘void ncbi::objects::CSourceItem::x_GatherInfoIdx(ncbi::objects::CBioseqContext&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/source_item.cpp:182:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 182 | for (int i = 0; i < sizeof (legal_organelles) / sizeof (const char*); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/source_item.cpp: In member function ‘void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/source_item.cpp:387:21: warning: comparison of integer expressions of different signedness: ‘ncbi::objects::CBioSource_Base::TGenome’ {aka ‘int’} and ‘const unsigned int’ [-Wsign-compare] 387 | if ( genome >= s_organelle_prefix_size ) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/version_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/version_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/version_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/version_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/version_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/version_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/version_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/version_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/version_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/version_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/version_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/version_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/version_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/version_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/version_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/version_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ src/objtools/format/keywords_item.cpp -o keywords_item.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/locus_item.cpp -o locus_item.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/primary_item.cpp -o primary_item.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/reference_item.cpp -o reference_item.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/segment_item.cpp -o segment_item.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/source_item.cpp -o source_item.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/version_item.cpp -o version_item.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/fIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/wgs_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/wgs_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/wgs_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/wgs_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/wgs_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/wgs_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/wgs_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/wgs_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/wgs_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/wgs_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/wgs_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/wgs_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/wgs_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/wgs_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/wgs_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/wgs_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/tsa_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/tsa_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/tsa_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/tsa_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/tsa_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/tsa_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/tsa_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/tsa_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/tsa_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/tsa_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/tsa_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/tsa_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/tsa_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/tsa_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/tsa_item.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/tsa_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_seqloc.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Int_fuzz_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Int_fuzz.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_seqloc.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_seqloc.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Int_fuzz_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Int_fuzz.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_seqloc.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_seqloc.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Int_fuzz_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Int_fuzz.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_seqloc.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_seqloc.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Int_fuzz_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Int_fuzz.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_seqloc.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_seqloc.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Int_fuzz_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Int_fuzz.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_seqloc.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_seqloc.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Int_fuzz_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Int_fuzz.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_seqloc.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_seqloc.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Int_fuzz_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Int_fuzz.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_seqloc.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_seqloc.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Int_fuzz_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Int_fuzz.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_seqloc.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_seqloc.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Int_fuzz_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Int_fuzz.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_seqloc.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_seqloc.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Int_fuzz_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/Int_fuzz.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_seqloc.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/qualifiers.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/qualifiers.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/qualifiers.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/qualifiers.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/qualifiers.cpp:52: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/qualifiers.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/qualifiers.cpp:52: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/qualifiers.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/qualifiers.cpp:52: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/qualifiers.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/qualifiers.cpp:56: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/qualifiers.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/qualifiers.cpp:56: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/qualifiers.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/qualifiers.cpp:56: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/qualifiers.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/qualifiers.cpp: In member function ‘virtual void ncbi::objects::CFlatSeqIdQVal::Format(ncbi::objects::TFlatQuals&, const ncbi::CTempString&, ncbi::objects::CBioseqContext&, ncbi::objects::IFlatQVal::TFlags) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/qualifiers.cpp:1108:10: warning: unused variable ‘bHtml’ [-Wunused-variable] 1108 | bool bHtml = ctx.Config().DoHTML(); | ^~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat_macros.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/misc/sequence_macros.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/context.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/context.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat_macros.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/misc/sequence_macros.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/context.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/context.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/context.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/context.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/context.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/context.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/context.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/context.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/context.cpp:56: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/context.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/context.cpp:56: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/context.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/context.cpp:56: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/context.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/context.cpp:64: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/context.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/context.cpp:64: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/context.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat_macros.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/misc/sequence_macros.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat_macros.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/misc/sequence_macros.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp:63: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp:63: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp:63: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp:73: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp:73: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp:73: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/gather_items.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp:100: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/gather_items.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp:100: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp:101: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/gather_iter.hpp:78:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 78 | auto_ptr m_BioseqIter; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp: In member function ‘void ncbi::objects::CFlatGatherer::x_SubtractFromFocus(ncbi::objects::CFlatGatherer::TSourceFeatSet&) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp:2138:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2138 | auto_ptr copyOfOriginalSeqLocOfFocus( new CSeq_loc() ); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp: At global scope: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp:965:13: warning: ‘bool ncbi::objects::s_NsAreGaps(const ncbi::objects::CBioseq_Handle&, ncbi::objects::CBioseqContext&)’ defined but not used [-Wunused-function] 965 | static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) | ^~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/comment_item.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_gather.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_gather.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/comment_item.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_gather.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_gather.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/sequence_item.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_gather.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_gather.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/sequence_item.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_gather.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_gather.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/sequence_item.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_gather.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_gather.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/gather_items.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_gather.cpp:52: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_gather.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/gather_items.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_gather.cpp:52: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_gather.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/gather_items.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_gather.cpp:52: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_gather.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_gather.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_gather.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_gather.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_gather.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_gather.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_gather.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_gather.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_gather.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_gather.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_gather.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_gather.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_gather.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_gather.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_gather.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_gather.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_gather.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/gather_items.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_gather.cpp:66: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_gather.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/gather_items.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_gather.cpp:66: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_gather.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ ormat/wgs_item.cpp -o wgs_item.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/context.cpp -o context.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_items.cpp -o gather_items.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_gather.cpp -o genbank_gather.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_genIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_generator.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_generator.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_generator.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_generator.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_generator.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_generator.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_generator.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_generator.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_generator.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_generator.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_generator.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_generator.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_generator.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_generator.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_generator.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_generator.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/flat_file_generator.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_generator.cpp:50: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_generator.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/flat_file_generator.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_generator.cpp:50: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_generator.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_formatter.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_formatter.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_formatter.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_formatter.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_formatter.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_formatter.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_formatter.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_formatter.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/item_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_formatter.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/item_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_formatter.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_formatter.cpp:59: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/gbseq_formatter.hpp:105:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 105 | auto_ptr m_Out; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/item_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/embl_formatter.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_formatter.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/item_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/embl_formatter.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_formatter.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/item_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/embl_formatter.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_formatter.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/item_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/embl_formatter.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_formatter.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/item_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/embl_formatter.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_formatter.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/item_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/embl_formatter.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_formatter.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/item_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/embl_formatter.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_formatter.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/item_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/embl_formatter.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_formatter.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/item_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/genbank_formatter.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/item_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/genbank_formatter.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp: In member function ‘virtual void ncbi::objects::CGenbankFormatter::FormatSequence(const ncbi::objects::CSequenceItem&, ncbi::objects::IFlatTextOStream&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp:2047:18: warning: catching polymorphic type ‘class ncbi::objects::CSeqVectorException’ by value [-Wcatch-value=] 2047 | } catch (CSeqVectorException) { | ^~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp:2088:26: warning: catching polymorphic type ‘class ncbi::objects::CSeqVectorException’ by value [-Wcatch-value=] 2088 | } catch (CSeqVectorException) { | ^~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp: At global scope: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp:281:15: warning: ‘std::string ncbi::objects::s_get_anchor_html(const string&, ncbi::TGi)’ defined but not used [-Wunused-function] 281 | static string s_get_anchor_html(const string & sAnchorName, TGi iGi ) | ^~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/origin_item.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/origin_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/origin_item.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/origin_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/origin_item.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/origin_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/origin_item.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/origin_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/origin_item.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/origin_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/origin_item.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/origin_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/origin_item.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/origin_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/origin_item.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/origin_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ erator.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/origin_item.cpp -o origin_item.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/forIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/comment_item.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/ctrl_items.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_gather.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_gather.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/comment_item.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/ctrl_items.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_gather.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_gather.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/feature_item.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_gather.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_gather.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/feature_item.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_gather.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_gather.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/feature_item.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_gather.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_gather.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/gather_items.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_gather.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_gather.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/gather_items.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_gather.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_gather.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/gather_items.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_gather.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_gather.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/item_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/ftable_formatter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_formatter.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/item_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/ftable_formatter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_formatter.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/item_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/ftable_formatter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_formatter.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/item_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/ftable_formatter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_formatter.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/item_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/ftable_formatter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_formatter.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/item_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/ftable_formatter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_formatter.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/item_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/ftable_formatter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_formatter.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/item_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/ftable_formatter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_formatter.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_formatter.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_formatter.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_formatter.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat_macros.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/misc/sequence_macros.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat_macros.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/misc/sequence_macros.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/item_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/gbseq_formatter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/item_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/gbseq_formatter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/gbseq_formatter.hpp:105:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 105 | auto_ptr m_Out; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gbseq_formatter.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/comment_item.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_config.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/flat_file_config.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_config.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/comment_item.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_config.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/flat_file_config.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_config.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/feature_item.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_config.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/flat_file_config.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_config.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/feature_item.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_config.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/flat_file_config.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_config.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/feature_item.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_config.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/flat_file_config.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_config.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/alignment_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/alignment_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/alignment_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/alignment_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/alignment_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/alignment_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/alignment_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/alignment_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/alignment_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/alignment_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/alignment_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/alignment_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/alignment_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/alignment_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/alignment_item.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/alignment_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_project_item.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_project_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_project_item.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_project_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_project_item.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_project_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_project_item.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_project_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_project_item.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_project_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_project_item.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_project_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_project_item.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_project_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_project_item.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_project_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_project_item.cpp: In member function ‘virtual void ncbi::objects::CGenomeProjectItem::x_GatherInfo(ncbi::objects::CBioseqContext&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_project_item.cpp:274:21: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 274 | auto_ptr pStrsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_project_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_project_item.cpp:305:21: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 305 | auto_ptr pIntsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_project_item.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/cigar_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sam_formatter.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/cigar_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sam_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/cigar_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sam_formatter.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/cigar_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sam_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/cigar_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sam_formatter.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/cigar_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sam_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sam_formatter.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/cigar_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sam_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sam_formatter.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/cigar_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sam_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sam_formatter.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/cigar_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sam_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sam_formatter.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/cigar_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sam_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sam_formatter.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/cigar_formatter.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sam_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ mat/ftable_gather.cpp -o ftable_gather.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gap_item.cpp -o gap_item.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/cigar_formatter.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/cigar_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/cigar_formatter.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/cigar_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/cigar_formatter.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/cigar_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/cigar_formatter.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/cigar_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/cigar_formatter.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/cigar_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/cigar_formatter.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/cigar_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/cigar_formatter.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/cigar_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/cigar_formatter.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_seg.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/cigar_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_iter.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/gather_iter.hpp:78:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 78 | auto_ptr m_BioseqIter; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/gather_iter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_iter.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_iter.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/gather_iter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_iter.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_iter.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/gather_iter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_iter.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_iter.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/gather_iter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_iter.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_iter.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/gather_iter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_iter.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_iter.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/gather_iter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_iter.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_iter.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/gather_iter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_iter.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_iter.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/gather_iter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_iter.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_iter.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/gather_iter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_iter.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_iter.cpp: In member function ‘bool ncbi::objects::CGather_Iter::x_AddSeqEntryToStack(const ncbi::objects::CSeq_entry_Handle&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_iter.cpp:145:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 145 | auto_ptr seq_iter( new CBioseq_CI(entry, mol_type, CBioseq_CI::eLevel_Mains) ); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/gather_iter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_iter.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/html_anchor_item.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/item_base.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/html_anchor_item.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/html_anchor_item.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/html_anchor_item.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/item_base.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/html_anchor_item.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/html_anchor_item.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/mapped_feat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/feature.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/html_anchor_item.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/item_base.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/html_anchor_item.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/html_anchor_item.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/html_anchor_item.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/item_base.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/html_anchor_item.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/html_anchor_item.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/html_anchor_item.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/item_base.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/html_anchor_item.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/html_anchor_item.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/html_anchor_item.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/item_base.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/html_anchor_item.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/html_anchor_item.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/html_anchor_item.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/item_base.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/html_anchor_item.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/html_anchor_item.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/html_anchor_item.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/item_base.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/html_anchor_item.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/html_anchor_item.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gene_finder.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gene_finder.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gene_finder.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gene_finder.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gene_finder.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gene_finder.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gene_finder.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gene_finder.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gene_finder.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gene_finder.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gene_finder.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gene_finder.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gene_finder.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gene_finder.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gene_finder.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gene_finder.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gene_finder.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gene_finder.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gene_finder.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gene_finder.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gene_finder.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gene_finder.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gene_finder.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gene_finder.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gene_finder.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gene_finder.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gene_finder.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gene_finder.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gene_finder.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gene_finder.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gene_finder.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gene_finder.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gene_finder.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gene_finder.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:322:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gene_finder.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gene_finder.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gene_finder.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gene_finder.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/context.hpp:479:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 479 | auto_ptr m_Selector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gene_finder.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gene_finder.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gene_finder.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gene_finder.hpp:113:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 113 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gene_finder.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gene_finder.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gene_finder.cpp:78:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 78 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/gene_finder.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gene_finder.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/flat_qual_slots.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_qual_slots.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/flat_qual_slots.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_qual_slots.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/flat_qual_slots.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_qual_slots.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/items/flat_qual_slots.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_qual_slots.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxformat.so .libxformat.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxformat.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxalnmgr -lxconnect -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxformat.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxformat.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxformat.so ln -f .xformat.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xformat.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/format' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/format' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C validator -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/validator' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/validator' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C asniotest -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/asniotest' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/asniotest' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C align -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/align' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/align' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C seqmasks_io -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/seqmasks_io' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/unit_test/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build unit_test/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/seqmasks_io/unit_test/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/seqmasks_io' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/seqmasks_io' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 94 | objects::CFastaReader::fAllSeqIds | | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 94 | objects::CFastaReader::fAllSeqIds | | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seqdesc.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seqdesc.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seqdesc.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seqdesc.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seqdesc.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seqdesc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seqdesc.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/seqmasks_io' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libseqmasks_io.so .libseqmasks_io.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libseqmasks_io.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lseqdb -lblastdb -llmdb -lpthread -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libseqmasks_io.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libseqmasks_io.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libseqmasks_io.so ln -f .seqmasks_io.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.seqmasks_io.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/seqmasks_io' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C unit_test -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/seqmasks_io/unit_test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/seqmasks_io/unit_test' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/seqmasks_io' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C eutils -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/eutils' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/eutils' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C align_format -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/align_format' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format TMPL=align_format -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/align_format' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/align_format' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format TMPL=align_format -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/align_format_util.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/align_format_util.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/align_format_util.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/align_format_util.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/align_format_util.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/align_format_util.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/align_format_util.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/align_format_util.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/align_format_util.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/align_format_util.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/align_format_util.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/align_format_util.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/align_format_util.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/align_format_util.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/align_format_util.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/align_format_util.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/align_format_util.cpp:93:1: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 93 | auto_ptr CAlignFormatUtil::m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/align_format_util.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/align_format_util.cpp: In static member function ‘static ncbi::align_format::CAlignFormatUtil::SSeqAlignSetCalcParams* ncbi::align_format::CAlignFormatUtil::GetSeqAlignCalcParams(const ncbi::objects::CSeq_align&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/align_format_util.cpp:4091:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 4091 | auto_ptr seqSetInfo(new SSeqAlignSetCalcParams); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/align_format_util.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/align_format_util.cpp: In static member function ‘static ncbi::align_format::CAlignFormatUtil::SSeqAlignSetCalcParams* ncbi::align_format::CAlignFormatUtil::GetSeqAlignSetCalcParamsFromASN(const ncbi::objects::CSeq_align_set&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/align_format_util.cpp:4327:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 4327 | auto_ptr seqSetInfo(new SSeqAlignSetCalcParams); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/align_format_util.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:448:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 448 | auto_ptr m_ConfigFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_Reg; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp: In member function ‘ncbi::align_format::CShowBlastDefline::SScoreInfo* ncbi::align_format::CShowBlastDefline::x_GetScoreInfo(const ncbi::objects::CSeq_align&, int)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:1456:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1456 | auto_ptr score_info(new SScoreInfo); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp: In member function ‘ncbi::align_format::CShowBlastDefline::SScoreInfo* ncbi::align_format::CShowBlastDefline::x_GetScoreInfoForTable(const ncbi::objects::CSeq_align_set&, int)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:1480:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1480 | auto_ptr score_info(new SScoreInfo); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:50: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:50: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:50: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:50: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmix.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:70: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 216 | auto_ptr m_Starts; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp: In member function ‘virtual void ncbi::align_format::CDisplaySeqalign::x_DisplayRowData(ncbi::align_format::CDisplaySeqalign::SAlnRowInfo*, ncbi::CNcbiOstream&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:1451:69: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1451 | if(m_QueryAnchoredSetIndex != -1 && m_QueryAnchoredSetIndex != rowSetsCount) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp: In member function ‘void ncbi::align_format::CDisplaySeqalign::DisplaySeqalign(ncbi::CNcbiOstream&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:1926:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1926 | auto_ptr out2(CObjectOStream::Open(eSerial_AsnText, out)); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:31, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:2104:33: warning: catching polymorphic type ‘class ncbi::CException’ by value [-Wcatch-value=] 2104 | } catch (CException e){ | ^ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp: In function ‘void ncbi::align_format::s_MakeDomainString(int, int, const string&, std::string&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:4446:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4446 | for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp:4446:81: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4446 | for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ | ~~^~~~~~~~~~~~~~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/align_format' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/aln_printer.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/vectorscreen.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/align_format_util.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/format_flags.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTFORMAT -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTFORMAT -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTFORMAT -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTFORMAT -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/showalign.cpp -o showalign.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTFORMAT -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmix.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmix.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmix.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmatch.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmix.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 216 | auto_ptr m_Starts; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:448:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 448 | auto_ptr m_ConfigFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_Reg; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/tabular.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/vectorscreen.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/html/html.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/vectorscreen.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/vectorscreen.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/html/html.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/vectorscreen.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/vectorscreen.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/html/html.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/vectorscreen.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/vectorscreen.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/html/html.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/vectorscreen.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/vectorscreen.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/html/html.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/vectorscreen.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/vectorscreen.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/html/html.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/vectorscreen.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/vectorscreen.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/html/html.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/vectorscreen.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/vectorscreen.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/html/html.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/vectorscreen.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/vectorscreen.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/User_object_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/User_object.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/User_object_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/User_object.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/User_object_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/User_object.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/User_object_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/User_object.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/User_object_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/User_object.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/User_object_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/User_object.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/User_object_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/User_object.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/User_object_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/User_object.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp: In member function ‘void ncbi::align_format::CSeqAlignFilter::ReadSeqalignSet(const string&, ncbi::objects::CSeq_align_set&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:515:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr asn_in(CObjectIStream::Open(fname, eSerial_AsnText)); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/User_object_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/User_object.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp: In member function ‘void ncbi::align_format::CSeqAlignFilter::WriteSeqalignSet(const string&, const ncbi::objects::CSeq_align_set&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr asn_out(CObjectOStream::Open(fname, eSerial_AsnText)); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/User_object_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/User_object.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp:33: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/taxFormat.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/taxFormat.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnmap.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/alnmgr/alnvec.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/taxFormat.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/taxFormat.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/taxFormat.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/taxFormat.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/taxFormat.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/taxFormat.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/data_loader.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/Taxon1_data.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1__.hpp:1, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp:33: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/aln_printer.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/aln_printer.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/aln_printer.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/aln_printer.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/aln_printer.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/aln_printer.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/aln_printer.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/aln_printer.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/aln_printer.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/aln_printer.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/aln_printer.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/aln_printer.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/aln_printer.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/aln_printer.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/aln_printer.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/aln_printer.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -o tabular.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTFORMAT -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTFORMAT -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTFORMAT -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTFORMAT -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libalign_format.so .libalign_format.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libalign_format.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lblast_services -lgene_info -lseqdb -lxobjread -lvariation -lsubmit -lxlogging -lxalnmgr -lxobjutil -lblastdb -lxnetblastcli -lxnetblast -lscoremat -ltaxon1 -lxhtml -lxcgi -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libalign_format.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libalign_format.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libalign_format.so ln -f .align_format.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.align_format.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/align_format' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C unit_test -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/align_format/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/align_format/unit_test' make[5]: Nothing to be done for 'mark-as-disabled_r'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/align_format/unit_test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/align_format/unit_test' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/align_format' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C snputil -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/snputil' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/snputil' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C uudutil -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/uudutil' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/uudutil' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C variation -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/variation' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/variation' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C writers -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/writers' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/writers' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C import -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/import' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/import' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C flatfile -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/flatfile' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools/flatfile' make[2]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/objtools' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C ctools -w all_r || exit 5 make[2]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/ctools' make[2]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/ctools' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C sra -w all_r || exit 5 make[2]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/sra' make[2]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/sra' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C algo -w all_r || exit 5 make[2]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/sequence/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/sequence/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/sequence/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build sequence/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/sequence/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/align/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/align/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/align/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build align/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/align/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/structure/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/structure/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/structure/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build structure/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/structure/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/gnomon/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/gnomon/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/gnomon/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build gnomon/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/gnomon/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/tree/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/tree/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/tree/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build tree/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/tree/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/phy_tree/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/phy_tree/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/phy_tree/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build phy_tree/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/phy_tree/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/seqqa/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/seqqa/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/seqqa/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build seqqa/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/seqqa/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/cobalt/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/cobalt/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/cobalt/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build cobalt/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/cobalt/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/text/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/text/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/text/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build text/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/text/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/volume_merge/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/volume_merge/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/volume_merge/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build volume_merge/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/volume_merge/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/primer/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/primer/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/primer/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build primer/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/primer/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/id_mapper/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/id_mapper/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/id_mapper/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build id_mapper/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/id_mapper/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C dustmask -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/dustmask' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask TMPL=xalgodustmask -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/dustmask' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/dustmask' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask TMPL=xalgodustmask -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask/symdust.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask/symdust.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask/symdust.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask/symdust.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask/symdust.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask/symdust.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask/symdust.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:159:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask/symdust.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask/symdust.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:168:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask/symdust.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask/symdust.cpp:214:6: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 214 | std::auto_ptr< CSymDustMasker::TMaskList > | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask/symdust.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask/symdust.cpp: In member function ‘std::auto_ptr > > ncbi::CSymDustMasker::operator()(const sequence_type&, ncbi::CSymDustMasker::size_type, ncbi::CSymDustMasker::size_type)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask/symdust.cpp:218:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 218 | std::auto_ptr< TMaskList > res( new TMaskList ); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask/symdust.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask/symdust.cpp: At global scope: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask/symdust.cpp:288:6: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 288 | std::auto_ptr< CSymDustMasker::TMaskList > | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask/symdust.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask/symdust.cpp: In member function ‘void ncbi::CSymDustMasker::GetMaskedLocs(ncbi::objects::CSeq_id&, const sequence_type&, std::vector >&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask/symdust.cpp:299:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 299 | std::auto_ptr< TMaskList > res = (*this)( seq ); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask/symdust.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask/symdust.cpp: In member function ‘ncbi::CRef ncbi::CSymDustMasker::GetMaskedInts(ncbi::objects::CSeq_id&, const sequence_type&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask/symdust.cpp:313:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 313 | std::auto_ptr< TMaskList > res = (*this)( seq ); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask/symdust.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/dustmask' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask/symdust.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/dustmask/symdust.cpp -o symdust.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxalgodustmask.so .libxalgodustmask.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxalgodustmask.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC symdust.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxalgodustmask.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxalgodustmask.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxalgodustmask.so ln -f .xalgodustmask.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xalgodustmask.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/dustmask' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/dustmask' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C winmask -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/winmask' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask TMPL=xalgowinmask -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/winmask' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/winmask' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask TMPL=xalgowinmask -w all make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/winmask' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_ostat.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_util.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/sIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_score.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_score_mean.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker.cpp: In member function ‘ncbi::CSeqMasker::TMaskList* ncbi::CSeqMasker::DoMask(const ncbi::objects::CSeqVector&, ncbi::TSeqPos, ncbi::TSeqPos) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker.cpp:166:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 166 | auto_ptr mask(new TMaskList); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker.cpp:171:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 171 | auto_ptr window_ptr | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_score.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_score_mean.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_score.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_score.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_score.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_score.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_score.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_score.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_score.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_score.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_score.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_score_min.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ eq_masker_score_min.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o /gnIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_util.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_util.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_util.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_util.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_util.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_util.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ u/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_factory.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_factory.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_factory.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_factory.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_bin.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbifile.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_bin.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbifile.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_bin.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbifile.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_bin.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbifile.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ p/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt.cpp -o seq_masker_ostat_opt.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_cache_boost.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_cache_boost.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_cache_boost.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_cache_boost.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_cache_boost.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_cache_boost.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_cache_boost.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_cache_boost.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_counts_converter.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_util.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_counts_converter.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_util.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_counts_converter.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_util.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_counts_converter.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_util.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:48: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_dup_table.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:50: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 188 | auto_ptr< CNcbiIstream > m_InputFile; // input file | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_dup_table.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:50: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_util.hpp:189:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 189 | auto_ptr< CMaskReader > m_Reader; // reader used for fasta and bdb formats | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_gen_counts.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_gen_counts.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_gen_counts.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_gen_counts.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 94 | objects::CFastaReader::fAllSeqIds | | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_gen_counts.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_gen_counts.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 94 | objects::CFastaReader::fAllSeqIds | | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_gen_counts.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_gen_counts.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 188 | auto_ptr< CNcbiIstream > m_InputFile; // input file | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_gen_counts.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_util.hpp:189:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 189 | auto_ptr< CMaskReader > m_Reader; // reader used for fasta and bdb formats | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_dup_table.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:54: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_dup_table.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:54: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Bioseq.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 188 | auto_ptr< CNcbiIstream > m_InputFile; // input file | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_util.hpp:189:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 189 | auto_ptr< CMaskReader > m_Reader; // reader used for fasta and bdb formats | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 94 | objects::CFastaReader::fAllSeqIds | | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 94 | objects::CFastaReader::fAllSeqIds | | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp: In member function ‘virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:130:39: warning: ‘std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)’ is deprecated [-Wdeprecated-declarations] 130 | string id_str = sequence::GetTitle( bsh ); | ~~~~~~~~~~~~~~~~~~^~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here 289 | string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_util.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_config.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_config.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_config.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_config.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_config.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 188 | auto_ptr< CNcbiIstream > m_InputFile; // input file | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_config.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_util.hpp:189:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 189 | auto_ptr< CMaskReader > m_Reader; // reader used for fasta and bdb formats | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 94 | objects::CFastaReader::fAllSeqIds | | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 94 | objects::CFastaReader::fAllSeqIds | | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp: In static member function ‘static void ncbi::CWinMaskConfig::AddWinMaskArgs(ncbi::CArgDescriptions&, ncbi::CWinMaskConfig::EAppType, bool)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:181:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 181 | if(type == eAny || type >= eGenerateMasksWithDuster) | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp:185:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 185 | arg_desc.AddDefaultKey( "dust_level", "dust_level", | ^~~~~~~~ 0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp:32: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp:32: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_window.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp:32: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp:32: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp:32: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ GEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxalgowinmask.so .libxalgowinmask.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxalgowinmask.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxalgowinmask.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxalgowinmask.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxalgowinmask.so ln -f .xalgowinmask.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xalgowinmask.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/winmask' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/winmask' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C sequence -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/sequence' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/sequence' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C blast -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex_search/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex_search/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex_search/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build dbindex_search/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/dbindex_search/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blast_sra_input/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blast_sra_input/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blast_sra_input/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build blast_sra_input/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/blast_sra_input/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/gumbel_params/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/gumbel_params/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/gumbel_params/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build gumbel_params/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/gumbel_params/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C composition_adjustment -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/composition_adjustment' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/composition_adjustment' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/composition_adjustment' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/composition_adjustment' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libcomposition_adjustment.so .libcomposition_adjustment.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libcomposition_adjustment.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libcomposition_adjustment.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libcomposition_adjustment.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libcomposition_adjustment.so ln -f .composition_adjustment.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.composition_adjustment.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/composition_adjustment' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/composition_adjustment' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C core -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/core' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core TMPL=blast -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/core' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/core' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core TMPL=blast -w all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/core' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/spliced_hits.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/hspfilter_mapper.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/jumper.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/boost_erf.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/index_ungapped.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/gencode_singleton.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/split_query.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_dynarray.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_sw.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_tune.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_query_info.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_program.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_posit.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_parameters.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/phi_lookup.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/phi_gapalign.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/phi_extend.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/pattern.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_encoding.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/ncbi_math.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/ncbi_std.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/matrix_freq_ratios.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/lookup_wrap.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/lookup_util.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/link_hsps.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/hspfilter_culling.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/hspfilter_besthit.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/hspfilter_collector.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/greedy_align.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/gapinfo.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_util.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_traceback.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_stat.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_setup.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_seqsrc.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_seg.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_psi_priv.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/na_ungapped.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_psi.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_options.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_message.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_nascan.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_nalookup.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_aascan.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_aalookup.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_lookup.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_kappa.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_itree.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_hspstream.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_hits.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_gapalign.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_filter.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_extend.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_engine.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_diagnostics.c. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/aa_ungapped.c. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_engine.c -o blast_engine.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_kappa.c: In function ‘Blast_RedoAlignmentCore_MT’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_kappa.c:3413: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 3413 | #pragma omp parallel \ | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_kappa.c:3432: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 3432 | #pragma omp for schedule(static) | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_kappa.c:3434: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas] 3434 | #pragma omp flush(interrupt) | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_kappa.c:3498: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 3498 | #pragma omp critical(intrpt) | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_kappa.c:3500: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas] 3500 | #pragma omp flush(interrupt) | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_kappa.c:3515: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 3515 | #pragma omp critical(intrpt) | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_kappa.c:3517: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas] 3517 | #pragma omp flush(interrupt) | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_kappa.c:3739: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 3739 | #pragma omp critical(intrpt) | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_kappa.c:3741: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas] 3741 | #pragma omp flush(interrupt) | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_kappa.c:3747: warning: ignoring ‘#pragma omp barrier’ [-Wunknown-pragmas] 3747 | #pragma omp barrier | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_nalookup.c: In function ‘s_NaHashLookupScanSubjectForWordCounts’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_nalookup.c:1860: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 1860 | #pragma omp parallel for if (num_threads > 1) num_threads(num_threads) \ | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_nalookup.c:1869: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 1869 | #pragma omp critical (get_sequence_for_word_counts) | -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_message.c -o blast_message.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_options.c -o blast_options.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/na_ungapped.c -o na_ungapped.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_psi_priv.c -o blast_psi_priv.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_seg.c -o blast_seg.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_seqsrc.c -o blast_seqsrc.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_setup.c -o blast_setup.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_stat.c -o bl/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_traceback.c: In function ‘BLAST_ComputeTraceback_MT’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_traceback.c:1518: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 1518 | #pragma omp parallel for default(none) num_threads(actual_num_threads) schedule(guided) if (actual_num_threads > 1) \ | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_traceback.c:1542: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 1542 | #pragma omp critical(retval) | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_traceback.c:1548: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas] 1548 | #pragma omp flush(has_been_interrupted) | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_traceback.c:1581: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 1581 | #pragma omp critical(tback_gen_code) | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_traceback.c:1611: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 1611 | #pragma omp critical(retval) | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_traceback.c:1651: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 1651 | #pragma omp critical(tback_gen_code) | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_util.c: In function ‘BlastProgram2Number’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_util.c:306:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 306 | else if (strcasecmp("mapper", program) == 0) | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_util.c:309:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 309 | return 0; | ^~~~~~ ast_stat.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_traceback.c -o blast_traceback.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_util.c -o blast_util.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/gapinfo.c -o gapinfo.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/greedy_align.c -o greedy_align.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/hspfilter_collector.c -o hspfilter_collector.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/hspfilter_besthit.c -o hspfilter_besthit.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/hspfilter_culling.c -o hspfilter_culling.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/gu/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/link_hsps.c: In function ‘s_FwdCompareHSPs’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/link_hsps.c:133:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 133 | else if (h1->context > h2->context) | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/link_hsps.c:136:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 136 | if (h1->query.offset < h2->query.offset) | ^~ ix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/link_hsps.c -o link_hsps.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/lookup_util.c -o lookup_util.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/lookup_wrap.c -o lookup_wrap.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/matrix_freq_ratios.c -o matrix_freq_ratios.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/ncbi_std.c -o ncbi_std.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/ncbi_math.c -o ncbi_math.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_encoding.c -o blast_encoding.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/pattern.c -o pattern.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/phi_extend.c -o phi_extend.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/phi_gapalign.c -o phi_gapalign.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/phi_lookup.c -o phi_lookup.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_parameters.c -o blast_parameters.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_program.c -o blast_program.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_query_info.c -o blast_query_info.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_tune.c -o blast_tune.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_sw.c -o blast_sw.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_dynarray.c -o blast_dynarray.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/split_query.c -o split_query.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/boost_erf.c -o boost_erf.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/jumper.c -o jumper.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/hspfilter_mapper.c -o hspfilter_mapper.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/core/spliced_hits.c -o spliced_hits.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libblast.so .libblast.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libblast.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o spliced_hits.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libblast.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libblast.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libblast.so ln -f .blast.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.blast.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/core' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/core' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C dbindex -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/dbindex' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/dbindex' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/dbindex' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 52 | objects::CFastaReader::fAllSeqIds; | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 52 | objects::CFastaReader::fAllSeqIds; | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp: In function ‘const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] 306 | unsigned long tmp; | ^~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function ‘std::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(ncbi::blastdbindex::CSubjectMap_Factory_Base::TSeqData&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:47: warning: ‘std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, ncbi::objects::sequence::TGetTitleFlags)’ is deprecated [-Wdeprecated-declarations] 658 | string idstr = objects::sequence::GetTitle( bsh ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here 289 | string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function ‘void ncbi::blastdbindex::COffsetData_Factory::Save(ncbi::CNcbiOstream&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:1409:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1409 | std::auto_ptr< CNcbiOfstream > stats; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In static member function ‘static void ncbi::blastdbindex::CDbIndex_Factory::do_create_1_2(ncbi::blastdbindex::CSequenceIStream&, const string&, ncbi::blastdbindex::CDbIndex::TSeqNum, ncbi::blastdbindex::CDbIndex::TSeqNum, ncbi::blastdbindex::CDbIndex::TSeqNum&, ncbi::blastdbindex::CDbIndex::TSeqNum&, const ncbi::blastdbindex::CDbIndex::SOptions&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:1665:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1665 | std::auto_ptr< COffsetList::CDataPool > pool( | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/dbindex' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxalgoblastdbindex.so .libxalgoblastdbindex.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxalgoblastdbindex.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxalgoblastdbindex.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxalgoblastdbindex.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxalgoblastdbindex.so ln -f .xalgoblastdbindex.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xalgoblastdbindex.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/dbindex' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C makeindex -w all_r || exit 5 make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/dbindex/makeindex' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp: In member function ‘virtual void ncbi::CMkIndexApplication::Init()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:67:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 67 | auto_ptr< CArgDescriptions > arg_desc( new CArgDescriptions ); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/dbindex/makeindex' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=makembindex /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=makembindex /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 main.o mkindex_app.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxalgoblastdbindex -lblast -lcomposition_adjustment -lseqdb -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -ltables -lconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread -o makembindex /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f makembindex /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f makembindex /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/makembindex make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/dbindex/makeindex' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/dbindex/makeindex' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/dbindex' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C dbindex_search -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/dbindex_search' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/dbindex_search' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C api -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/api' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api TMPL=xblast -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/api' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/api' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api TMPL=xblast -w all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/api' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_usage_report.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_node.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/magicblast.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/magicblast_options.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/deltablast.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/deltablast_options.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seedtop.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/rpsblast_local.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/subj_ranges_set.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_blk.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_dbindex.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/query_data.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_search.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_results.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/local_search.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/uniform_search.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/traceback_stage.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/prelim_stage.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/setup_factory.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/search_strategy.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/rps_aux.cpp. Updating dependency information for 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/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psi_pssm_input.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_iteration.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_impl.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/local_db_adapter.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psibl2seq.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_mtlock.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/bl2seq.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_blast.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/local_blast.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/pssm_engine.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/rpstblastn_options.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/tblastn_options.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/tblastx_options.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blastx_options.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_rps_options.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_options.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_prot_options.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/disc_nucl_options.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_nucl_options.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_cxx.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_aux.cpp. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c Updating dependency information for .core_spliced_hits.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c Updating dependency information for .core_hspfilter_mapper.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c Updating dependency information for .core_jumper.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c Updating dependency information for .core_boost_erf.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c Updating dependency information for .core_blast_hspstream_mt_utils.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c Updating dependency information for .core_blast_traceback_mt_priv.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c Updating dependency information for .core_index_ungapped.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c Updating dependency information for .core_gencode_singleton.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c Updating dependency information for .core_split_query.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c Updating dependency information for .core_blast_dynarray.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c Updating dependency information for .core_blast_sw.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c Updating dependency information for .core_blast_tune.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c Updating dependency information for .core_blast_query_info.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c Updating dependency information for .core_blast_program.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c Updating dependency information for .core_blast_posit.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c Updating dependency information for .core_blast_parameters.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c Updating dependency information for .core_phi_lookup.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c Updating dependency information for .core_phi_gapalign.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c Updating dependency information for .core_phi_extend.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c Updating dependency information for .core_pattern.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c Updating dependency information for .core_blast_encoding.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c Updating dependency information for .core_ncbi_math.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c Updating dependency information for .core_ncbi_std.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c Updating dependency information for .core_matrix_freq_ratios.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c Updating dependency information for .core_lookup_wrap.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c Updating dependency information for .core_lookup_util.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c Updating dependency information for .core_link_hsps.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c Updating dependency information for .core_hspfilter_culling.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c Updating dependency information for .core_hspfilter_besthit.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/hspfilter_collector.c"' > .core_hspfilter_collector.c Updating dependency information for .core_hspfilter_collector.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c Updating dependency information for .core_greedy_align.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c Updating dependency information for .core_gapinfo.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c Updating dependency information for .core_blast_util.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c Updating dependency information for .core_blast_traceback.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c Updating dependency information for .core_blast_stat.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c Updating dependency information for .core_blast_setup.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c Updating dependency information for .core_blast_seqsrc.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c Updating dependency information for .core_blast_seg.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c Updating dependency information for .core_blast_psi_priv.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c Updating dependency information for .core_na_ungapped.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c Updating dependency information for .core_blast_psi.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c Updating dependency information for .core_blast_options.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c Updating dependency information for .core_blast_message.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c Updating dependency information for .core_blast_nascan.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c Updating dependency information for .core_blast_nalookup.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c Updating dependency information for .core_blast_aascan.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c Updating dependency information for .core_blast_aalookup.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c Updating dependency information for .core_blast_lookup.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c Updating dependency information for .core_blast_kappa.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_itree.c"' > .core_blast_itree.c Updating dependency information for .core_blast_itree.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c Updating dependency information for .core_blast_hspstream.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c Updating dependency information for .core_blast_hits.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c Updating dependency information for .core_blast_gapalign.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c Updating dependency information for .core_blast_filter.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c Updating dependency information for .core_blast_extend.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c Updating dependency information for .core_blast_engine.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c Updating dependency information for .core_blast_diagnostics.c. echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c Updating dependency information for .core_aa_ungapped.c. rm .core_blast_dynarray.c .core_blast_util.c .core_boost_erf.c .core_blast_posit.c .core_hspfilter_mapper.c .core_blast_itree.c .core_hspfilter_culling.c .core_blast_program.c .core_ncbi_math.c .core_ncbi_std.c .core_blast_traceback.c .core_blast_stat.c .core_blast_seqsrc.c .core_blast_setup.c .core_index_ungapped.c .core_link_hsps.c .core_blast_engine.c .core_pattern.c .core_blast_filter.c .core_greedy_align.c .core_lookup_wrap.c .core_lookup_util.c .core_hspfilter_besthit.c .core_gencode_singleton.c .core_gapinfo.c .core_spliced_hits.c .core_blast_psi.c .core_blast_hits.c .core_blast_kappa.c .core_blast_message.c .core_blast_parameters.c .core_matrix_freq_ratios.c .core_hspfilter_collector.c .core_blast_traceback_mt_priv.c .core_aa_ungapped.c .core_blast_hspstream_mt_utils.c .core_blast_aascan.c .core_blast_lookup.c .core_blast_diagnostics.c .core_phi_lookup.c .core_blast_nascan.c .core_blast_hspstream.c .core_blast_query_info.c .core_blast_gapalign.c .core_na_ungapped.c .core_blast_seg.c .core_phi_extend.c .core_blast_nalookup.c .core_split_query.c .core_blast_sw.c .core_blast_encoding.c .core_blast_tune.c .core_blast_psi_priv.c .core_jumper.c .core_blast_options.c .core_blast_aalookup.c .core_blast_extend.c .core_phi_gapalign.c echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/aa_ungapped.c"' > .core_aa_ungapped.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_aa_ungapped.c -o .core_aa_ungapped.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_diagnostics.c"' > .core_blast_diagnostics.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_diagnostics.c -o .core_blast_diagnostics.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_engine.c"' > .core_blast_engine.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_engine.c -o .core_blast_engine.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_extend.c"' > .core_blast_extend.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_extend.c -o .core_blast_extend.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_filter.c"' > .core_blast_filter.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_filter.c -o .core_blast_filter.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_gapalign.c"' > .core_blast_gapalign.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_gapalign.c -o .core_blast_gapalign.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_hits.c"' > .core_blast_hits.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_hits.c -o .core_blast_hits.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_hspstream.c"' > .core_blast_hspstream.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_hspstream.c -o .core_blast_hspstream.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_itree.c"' >In file included from .core_blast_kappa.c:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c: In function ‘Blast_RedoAlignmentCore_MT’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3413: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 3413 | #pragma omp parallel \ | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3432: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 3432 | #pragma omp for schedule(static) | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3434: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas] 3434 | #pragma omp flush(interrupt) | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3498: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 3498 | #pragma omp critical(intrpt) | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3500: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas] 3500 | #pragma omp flush(interrupt) | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3515: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 3515 | #pragma omp critical(intrpt) | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3517: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas] 3517 | #pragma omp flush(interrupt) | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3739: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 3739 | #pragma omp critical(intrpt) | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3741: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas] 3741 | #pragma omp flush(interrupt) | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c:3747: warning: ignoring ‘#pragma omp barrier’ [-Wunknown-pragmas] 3747 | #pragma omp barrier | In file included from .core_blast_nalookup.c:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_nalookup.c: In function ‘s_NaHashLookupScanSubjectForWordCounts’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_nalookup.c:1860: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 1860 | #pragma omp parallel for if (num_threads > 1) num_threads(num_threads) \ | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_nalookup.c:1869: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 1869 | #pragma omp critical (get_sequence_for_word_counts) | .core_blast_itree.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_itree.c -o .core_blast_itree.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_kappa.c"' > .core_blast_kappa.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_kappa.c -o .core_blast_kappa.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_lookup.c"' > .core_blast_lookup.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_lookup.c -o .core_blast_lookup.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_aalookup.c"' > .core_blast_aalookup.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_aalookup.c -o .core_blast_aalookup.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_aascan.c"' > .core_blast_aascan.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_aascan.c -o .core_blast_aascan.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_nalookup.c"' > .core_blast_nalookup.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_nalookup.c -o .core_blast_nalookup.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_nascan.c"' > .core_blast_nascan.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_nascan.c -o .core_blast_nascan.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_message.c"' > .core_blast_message.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_message.c -o .core_blast_message.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_options.c"' > .core_blast_options.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_options.c -o .core_blast_options.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_psi.c"' > .core_blast_psi.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_psi.c -o .core_blast_psi.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/na_ungapped.c"' > .core_na_ungapped.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_na_ungapped.c -o .core_na_ungapped.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_psi_priv.c"' > .core_blast_psi_priv.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_psi_priv.c -o .core_blast_psi_priv.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_seg.c"' > .core_blast_seg.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_seg.c -o .core_blast_seg.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_seqsrc.c"' > .core_blast_seqsrc.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBIIn file included from .core_blast_traceback.c:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_traceback.c: In function ‘BLAST_ComputeTraceback_MT’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_traceback.c:1518: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 1518 | #pragma omp parallel for default(none) num_threads(actual_num_threads) schedule(guided) if (actual_num_threads > 1) \ | In file included from .core_blast_traceback.c:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_traceback.c:1542: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 1542 | #pragma omp critical(retval) | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_traceback.c:1548: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas] 1548 | #pragma omp flush(has_been_interrupted) | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_traceback.c:1581: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 1581 | #pragma omp critical(tback_gen_code) | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_traceback.c:1611: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 1611 | #pragma omp critical(retval) | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_traceback.c:1651: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 1651 | #pragma omp critical(tback_gen_code) | In file included from .core_blast_util.c:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_util.c: In function ‘BlastProgram2Number’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_util.c:306:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 306 | else if (strcasecmp("mapper", program) == 0) | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_util.c:309:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 309 | return 0; | ^~~~~~ _MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_seqsrc.c -o .core_blast_seqsrc.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_setup.c"' > .core_blast_setup.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_setup.c -o .core_blast_setup.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_stat.c"' > .core_blast_stat.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_stat.c -o .core_blast_stat.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_traceback.c"' > .core_blast_traceback.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_traceback.c -o .core_blast_traceback.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_util.c"' > .core_blast_util.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_util.c -o .core_blast_util.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/gapinfo.c"' > .core_gapinfo.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_gapinfo.c -o .core_gapinfo.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/greedy_align.c"' > .core_greedy_align.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_greedy_align.c -o .core_greedy_align.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../coIn file included from .core_link_hsps.c:1: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/link_hsps.c: In function ‘s_FwdCompareHSPs’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/link_hsps.c:133:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 133 | else if (h1->context > h2->context) | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/link_hsps.c:136:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 136 | if (h1->query.offset < h2->query.offset) | ^~ re/hspfilter_collector.c"' > .core_hspfilter_collector.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_hspfilter_collector.c -o .core_hspfilter_collector.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/hspfilter_besthit.c"' > .core_hspfilter_besthit.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_hspfilter_besthit.c -o .core_hspfilter_besthit.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/hspfilter_culling.c"' > .core_hspfilter_culling.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_hspfilter_culling.c -o .core_hspfilter_culling.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/link_hsps.c"' > .core_link_hsps.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_link_hsps.c -o .core_link_hsps.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/lookup_util.c"' > .core_lookup_util.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_lookup_util.c -o .core_lookup_util.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/lookup_wrap.c"' > .core_lookup_wrap.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_lookup_wrap.c -o .core_lookup_wrap.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/matrix_freq_ratios.c"' > .core_matrix_freq_ratios.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_matrix_freq_ratios.c -o .core_matrix_freq_ratios.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/ncbi_std.c"' > .core_ncbi_std.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_ncbi_std.c -o .core_ncbi_std.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/ncbi_math.c"' > .core_ncbi_math.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_ncbi_math.c -o .core_ncbi_math.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_encoding.c"' > .core_blast_encoding.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_encoding.c -o .core_blast_encoding.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/pattern.c"' > .core_pattern.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_pattern.c -o .core_pattern.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/phi_extend.c"' > .core_phi_extend.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_phi_extend.c -o .core_phi_extend.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/phi_gapalign.c"' > .core_phi_gapalign.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_phi_gapalign.c -o .core_phi_gapalign.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/phi_lookup.c"' > .core_phi_lookup.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_phi_lookup.c -o .core_phi_lookup.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_parameters.c"' > .core_blast_parameters.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_parameters.c -o .core_blast_parameters.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_posit.c"' > .core_blast_posit.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_posit.c -o .core_blast_posit.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_program.c"' > .core_blast_program.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_program.c -o .core_blast_program.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_query_info.c"' > .core_blast_query_info.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_query_info.c -o .core_blast_query_info.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_tune.c"' > .core_blast_tune.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_tune.c -o .core_blast_tune.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_sw.c"' > .core_blast_sw.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_sw.c -o .core_blast_sw.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_dynarray.c"' > .core_blast_dynarray.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_dynarray.c -o .core_blast_dynarray.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/split_query.c"' > .core_split_query.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_split_query.c -o .core_split_query.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/gencode_singleton.c"' > .core_gencode_singleton.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_gencode_singleton.c -o .core_gencode_singleton.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/index_ungapped.c"' > .core_index_ungapped.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_index_ungapped.c -o .core_index_ungapped.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_traceback_mt_priv.c"' > .core_blast_traceback_mt_priv.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_traceback_mt_priv.c -o .core_blast_traceback_mt_priv.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/blast_hspstream_mt_utils.c"' > .core_blast_hspstream_mt_utils.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_blast_hspstream_mt_utils.c -o .core_blast_hspstream_mt_utils.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/boost_erf.c"' > .core_boost_erf.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODUIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_aux.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_aux.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_aux.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_aux.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_aux.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_aux.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_cxx.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_cxx.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_cxx.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_cxx.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_cxx.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_cxx.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_local_priv.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_exception.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_local_priv.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_exception.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_local_priv.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_exception.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp: In member function ‘bool ncbi::blast::CBlastOptionsLocal::Validate() const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp:387:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 387 | else | ^~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp:396:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 396 | return true; | ^~~~~~ LE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_boost_erf.c -o .core_boost_erf.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/jumper.c"' > .core_jumper.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_jumper.c -o .core_jumper.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/hspfilter_mapper.c"' > .core_hspfilter_mapper.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_hspfilter_mapper.c -o .core_hspfilter_mapper.o echo '#include "/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/../core/spliced_hits.c"' > .core_spliced_hits.c /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include .core_spliced_hits.c -o .core_spliced_hits.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbifile.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/util_misc.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbifile.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/util_misc.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbifile.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/util_misc.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_seqalign.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_seqalign.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_seqalign.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_seqalign.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_seqalign.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_seqalign.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_exception.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_exception.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_exception.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp: In member function ‘char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:100:35: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] 100 | return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here 178 | NCBI_DEPRECATED char* GetFilterString() const; | ^~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp: In member function ‘void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:106:28: warning: ‘void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)’ is deprecated [-Wdeprecated-declarations] 106 | m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); | ^~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_nucl_options.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_nucl_options.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_nucl_options.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_nucl_options.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_nucl_options.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_nucl_options.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/disc_nucl_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/disc_nucl_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/disc_nucl_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/disc_nucl_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/disc_nucl_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/disc_nucl_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/disc_nucl_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/disc_nucl_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/disc_nucl_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/disc_nucl_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/disc_nucl_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/disc_nucl_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_prot_options.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_prot_options.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_prot_options.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_prot_options.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_prot_options.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_prot_options.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-formatIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_rps_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_rps_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_rps_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_rps_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_rps_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_rps_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blastx_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blastx_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blastx_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blastx_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blastx_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blastx_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blastx_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blastx_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blastx_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blastx_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blastx_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blastx_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/tblastx_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/tblastx_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/tblastx_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/tblastx_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/tblastx_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/tblastx_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/tblastx_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/tblastx_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/tblastx_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/tblastx_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/tblastx_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/tblastx_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/tblastn_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/tblastn_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/tblastn_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/tblastn_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/tblastn_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/tblastn_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/tblastn_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/tblastn_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/tblastn_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/tblastn_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/tblastn_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/tblastn_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/rpstblastn_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/rpstblastn_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/rpstblastn_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/rpstblastn_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/rpstblastn_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/rpstblastn_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/rpstblastn_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/rpstblastn_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/rpstblastn_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/rpstblastn_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_rps_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/rpstblastn_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/rpstblastn_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_nucl_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/phiblast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/phiblast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/phiblast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/phiblast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/phiblast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/phiblast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/includIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/pssm_engine.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/pssm_engine.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/pssm_engine.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/pssm_engine.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/pssm_engine.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/pssm_engine.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/local_blast.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/local_blast.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/local_blast.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/local_blast.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/local_blast.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/local_blast.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_blast.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_blast.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_blast.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_blast.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_blast.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_blast.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_blast.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_blast.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_blast.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/search_strategy.hpp:178:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 178 | auto_ptr m_Data; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_blast.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_blast.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/search_strategy.hpp:181:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 181 | auto_ptr m_OptionsBuilder; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_blast.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_blast.cpp: In function ‘ncbi::CRef ncbi::blast::ExtractBlast4Request(ncbi::CNcbiIstream&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_blast.cpp:2273:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2273 | auto_ptr is( | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_blast.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_blast.cpp:2311:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2311 | auto_ptr is( | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_blast.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_blast.cpp: In member function ‘ncbi::CRef ncbi::blast::CRemoteBlast::x_GetSearchResultsHTTP()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_blast.cpp:2508:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2508 | auto_ptr tmp_stream( CDirEntry::CreateTmpFile() ); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_blast.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_blast.cpp:2546:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2546 | auto_ptr | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_blast.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/seqinfosrc_seqdb.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/seqinfosrc_seqdb.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/seqinfosrc_seqdb.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_seqinfosrc.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_seqinfosrc.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_seqinfosrc.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/seqsrc_multiseq.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/seqsrc_multiseq.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/seqsrc_multiseq.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp: In function ‘BlastSeqSrc* ncbi::blast::MultiSeqBlastSeqSrcInit(ncbi::blast::TSeqLocVector&, EBlastProgramType, bool)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp:562:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 562 | auto_ptr args | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_setup.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_setup.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_setup.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ e /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/bl2seq.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/bl2seq.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_types.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/bl2seq.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/bl2seq.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/bl2seq.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/bl2seq.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_types.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/bl2seq.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/bl2seq.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/bl2seq.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/bl2seq.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_types.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/bl2seq.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/bl2seq.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:159:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:168:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psibl2seq.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psibl2seq.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_types.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psibl2seq.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psibl2seq.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psibl2seq.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psibl2seq.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_types.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psibl2seq.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psibl2seq.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psibl2seq.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psibl2seq.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_types.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psibl2seq.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psibl2seq.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_db_adapter.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/local_db_adapter.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_types.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_db_adapter.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/local_db_adapter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_db_adapter.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/local_db_adapter.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_types.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_db_adapter.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/local_db_adapter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_db_adapter.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/local_db_adapter.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_types.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_db_adapter.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/local_db_adapter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psiblast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psiblast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psiblast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psiblast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psiblast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psiblast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_impl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_impl.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_impl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_impl.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_impl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_impl.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_impl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_impl.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_impl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_impl.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_impl.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_impl.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_iteration.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_iteration.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_iteration.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_iteration.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_iteration.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_id.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_iteration.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psi_pssm_input.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psi_pssm_input.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/locale_conv.h:41, from /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/locale:43, from /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/iomanip:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psi_pssm_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psi_pssm_input.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psi_pssm_input.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/locale_conv.h:41, from /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/locale:43, from /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/iomanip:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psi_pssm_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psi_pssm_input.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psi_pssm_input.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/locale_conv.h:41, from /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/locale:43, from /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/iomanip:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psi_pssm_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/msa_pssm_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/msa_pssm_input.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/msa_pssm_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/msa_pssm_input.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/msa_pssm_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/msa_pssm_input.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/aln_reader.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/msa_pssm_input.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/aln_reader.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/msa_pssm_input.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/aln_reader.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/msa_pssm_input.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function ‘void ncbi::blast::CPsiBlastInputClustalW::x_ReadAsciiMsa(ncbi::CNcbiIstream&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:125:20: warning: ‘void ncbi::CAlnReader::Read(bool, bool, ncbi::objects::ILineErrorListener*)’ is deprecated [-Wdeprecated-declarations] 125 | reader.Read(false, true); | ~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/aln_reader.hpp:215:10: note: declared here 215 | void Read( | ^~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function ‘void ncbi::blast::CPsiBlastInputClustalW::x_ExtractAlignmentData()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp:376:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘Uint4’ {aka ‘unsigned int’} [-Wsign-compare] 376 | while (k < m_Msa->dimensions->query_length && | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/pssm_engine.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/pssm_engine.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/pssm_engine.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp: In function ‘void ncbi::blast::PsiBlastSetupScoreBlock(BlastScoreBlk*, ncbi::CConstRef, ncbi::blast::TSearchMessages&, ncbi::CConstRef)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:136:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 136 | auto_ptr< CNcbiMatrix > scores | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:156:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr< CNcbiMatrix > freq_ratios | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp: In static member function ‘static ncbi::CNcbiMatrix* ncbi::blast::CScorematPssmConverter::GetScores(const ncbi::objects::CPssmWithParameters&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:252:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 252 | auto_ptr< CNcbiMatrix > retval | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp: In static member function ‘static ncbi::CNcbiMatrix* ncbi::blast::CScorematPssmConverter::GetFreqRatios(const ncbi::objects::CPssmWithParameters&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr< CNcbiMatrix > retval | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp: In static member function ‘static ncbi::CNcbiMatrix* ncbi::blast::CScorematPssmConverter::GetResidueFrequencies(const ncbi::objects::CPssmWithParameters&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:301:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 301 | auto_ptr< CNcbiMatrix > retval | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp: In static member function ‘static ncbi::CNcbiMatrix* ncbi::blast::CScorematPssmConverter::GetWeightedResidueFrequencies(const ncbi::objects::CPssmWithParameters&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:327:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 327 | auto_ptr< CNcbiMatrix > retval | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp: In function ‘void ncbi::blast::PsiBlastComputePssmScores(ncbi::CRef, const ncbi::blast::CBlastOptions&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:477:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 477 | auto_ptr< CNcbiMatrix > freq_ratios | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_aux_priv.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_aux_priv.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_aux_priv.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_aux_priv.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_aux_priv.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_aux_priv.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_aux_priv.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_aux_priv.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_aux_priv.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_aux_priv.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_aux_priv.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_aux_priv.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_aux_priv.cpp: In function ‘ncbi::CRef ncbi::blast::BlastSetupPreliminarySearchEx(ncbi::CRef, ncbi::CRef, ncbi::CConstRef, BlastSeqSrc*, size_t)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_aux_priv.cpp:167:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 167 | auto_ptr opts_memento | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_aux_priv.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_aux_priv.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_advprot_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_advprot_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_advprot_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_advprot_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_advprot_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_advprot_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c+In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blastp_kmer_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blastp_kmer_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blastp_kmer_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blastp_kmer_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blastp_kmer_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blastp_kmer_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:159:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:168:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/rps_aux.cpp:252:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 252 | auto_ptr m_MmappedFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbifile.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/rps_aux.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/rps_aux.cpp: In member function ‘void ncbi::blast::CBlastRPSInfo::x_Init(const string&, int)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/rps_aux.cpp:532:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 532 | auto_ptr rps_info; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbifile.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/rps_aux.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/search_strategy.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/search_strategy.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/search_strategy.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/search_strategy.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/search_strategy.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/search_strategy.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/search_strategy.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/search_strategy.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/search_strategy.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/search_strategy.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/search_strategy.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/search_strategy.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/search_strategy.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/search_strategy.hpp:178:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 178 | auto_ptr m_Data; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/search_strategy.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/search_strategy.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/search_strategy.hpp:181:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 181 | auto_ptr m_OptionsBuilder; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/search_strategy.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/setup_factory.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/setup_factory.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/setup_factory.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/setup_factory.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/setup_factory.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/setup_factory.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/prelim_stage.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/prelim_stage.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/prelim_stage.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/prelim_stage.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/prelim_stage.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/prelim_stage.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/prelim_stage.cpp: In member function ‘virtual void ncbi::blast::CBlastPrelimSearch::SetNumberOfThreads(size_t)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/prelim_stage.cpp:117:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr opts_memento | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/prelim_stage.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/prelim_stage.cpp: In member function ‘int ncbi::blast::CBlastPrelimSearch::x_LaunchMultiThreadedSearch(ncbi::blast::SInternalData&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/prelim_stage.cpp:147:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 147 | auto_ptr opts_memento | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/prelim_stage.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/prelim_stage.cpp: In member function ‘ncbi::CRef ncbi::blast::CBlastPrelimSearch::Run()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/prelim_stage.cpp:216:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 216 | auto_ptr opts_memento | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/prelim_stage.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/prelim_stage.cpp: In member function ‘BlastHSPResults* ncbi::blast::CBlastPrelimSearch::ComputeBlastHSPResults(BlastHSPStream*, Uint4, bool*, std::vector*) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/prelim_stage.cpp:329:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 329 | auto_ptr opts_memento | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/prelim_stage.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/traceback_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/traceback_stage.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/traceback_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/traceback_stage.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/traceback_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/traceback_stage.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/traceback_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/traceback_stage.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/traceback_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/traceback_stage.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/traceback_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/traceback_stage.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/traceback_stage.cpp: In member function ‘ncbi::CRef ncbi::blast::CBlastTracebackSearch::Run()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/traceback_stage.cpp:226:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 226 | auto_ptr omp_env; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/traceback_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/traceback_stage.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/traceback_stage.cpp: In member function ‘BlastHSPResults* ncbi::blast::CBlastTracebackSearch::RunSimple()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/traceback_stage.cpp:329:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 329 | auto_ptr omp_env; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/traceback_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/traceback_stage.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ +/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blastp_kmer_options.cpp -o blastp_kmer_options.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/version.cpp -o version.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/uniform_search.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_types.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/uniform_search.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/uniform_search.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_types.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/uniform_search.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/uniform_search.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_types.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/uniform_search.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/local_search.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/Pssm_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/Pssm.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/local_search.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_search.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/local_search.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/Pssm_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/Pssm.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/local_search.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_search.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/local_search.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/Pssm_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/Pssm.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/local_search.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_search.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/local_search.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/Pssm_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/Pssm.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/local_search.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_results.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_results.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_results.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_results.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_results.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_results.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_search.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_search.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_diag_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_diag.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/seqalign__.hpp:1, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_search.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_search.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_search.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_diag_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_diag.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/seqalign__.hpp:1, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_search.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_search.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_search.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_diag_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_diag.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/seqalign__.hpp:1, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_search.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_search.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_search.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_diag_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/Dense_diag.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqalign/seqalign__.hpp:1, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_search.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/query_data.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/query_data.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/query_data.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/query_data.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/query_data.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/query_data.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/objmgr_query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/objmgr_query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/objmgr_query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/uniform_search.cpp -o uniform_search.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/local_search.cpp -o local_search.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/query_data.cpp -o query_data.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp: In constructor ‘ncbi::blast::CEffectiveSearchSpaceCalculator::CEffectiveSearchSpaceCalculator(ncbi::CRef, const ncbi::blast::CBlastOptions&, Int4, Int8, BlastScoreBlk*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp:96:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 96 | auto_ptr opts_memento | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/simple/simple_om.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp: In member function ‘void ncbi::blast::CQuerySplitter::x_ComputeQueryContextsForChunks()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp:344:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 344 | auto_ptr qdpc; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/effsearchspace_calc.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_aux_priv.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_blk.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_blk.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_blk.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_aux_priv.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_blk.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_blk.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_blk.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_aux_priv.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_blk.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_blk.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_blk.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.cpp:61: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ 3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drvIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/rpsblast_local.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbifile.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/rpsblast_local.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/rpsblast_local.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbifile.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/rpsblast_local.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/rpsblast_local.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbifile.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/rpsblast_local.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/seedtop.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seedtop.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/seedtop.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seedtop.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/seedtop.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seedtop.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/seedtop.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seedtop.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/seedtop.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seedtop.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/seedtop.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seedtop.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/cdd_pssm_input.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/cdd_pssm_input.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/cdd_pssm_input.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/cdd_pssm_input.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/cdd_pssm_input.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/cdd_pssm_input.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp:38: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/deltablast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/deltablast_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/deltablast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/deltablast_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/deltablast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/deltablast_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/deltablast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/deltablast_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/deltablast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/deltablast_options.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_prot_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_advprot_options.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psiblast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/deltablast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/deltablast_options.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psiblast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/deltablast.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psiblast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/deltablast.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psiblast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/deltablast.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psiblast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/deltablast.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psiblast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/deltablast.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/psiblast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/deltablast.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/magicblast_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/magicblast_options.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/magicblast_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/magicblast_options.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/magicblast_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/magicblast_options.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/magicblast_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/magicblast_options.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/magicblast_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/magicblast_options.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/scoremat/PssmWithParameters.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/magicblast_options.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/magicblast_options.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/magicblast.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/User_object_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/User_object.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/magicblast.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/magicblast.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/User_object_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/User_object.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/magicblast.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/magicblast.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/User_object_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/general/User_object.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/magicblast.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ -0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/magicblast_options.cpp -o magicblast_options.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/magicblast.cpp -o magicblast.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_node.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_node.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_node.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_node.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_node.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_node.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_node.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_node.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_usage_report.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_usage_report.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ ARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_node.cpp -o blast_node.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/api/blast_usage_report.cpp -o blast_usage_report.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxblast.so .libxblast.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxblast.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC .core_aa_ungapped.o .core_blast_diagnostics.o .core_blast_engine.o .core_blast_extend.o .core_blast_filter.o .core_blast_gapalign.o .core_blast_hits.o .core_blast_hspstream.o .core_blast_itree.o .core_blast_kappa.o .core_blast_lookup.o .core_blast_aalookup.o .core_blast_aascan.o .core_blast_nalookup.o .core_blast_nascan.o .core_blast_message.o .core_blast_options.o .core_blast_psi.o .core_na_ungapped.o .core_blast_psi_priv.o .core_blast_seg.o .core_blast_seqsrc.o .core_blast_setup.o .core_blast_stat.o .core_blast_traceback.o .core_blast_util.o .core_gapinfo.o .core_greedy_align.o .core_hspfilter_collector.o .core_hspfilter_besthit.o .core_hspfilter_culling.o .core_link_hsps.o .core_lookup_util.o .core_lookup_wrap.o .core_matrix_freq_ratios.o .core_ncbi_std.o .core_ncbi_math.o .core_blast_encoding.o .core_pattern.o .core_phi_extend.o .core_phi_gapalign.o .core_phi_lookup.o .core_blast_parameters.o .core_blast_posit.o .core_blast_program.o .core_blast_query_info.o .core_blast_tune.o .core_blast_sw.o .core_blast_dynarray.o .core_split_query.o .core_gencode_singleton.o .core_index_ungapped.o .core_blast_traceback_mt_priv.o .core_blast_hspstream_mt_utils.o .core_boost_erf.o .core_jumper.o .core_hspfilter_mapper.o .core_spliced_hits.o blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o blastp_kmer_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o blast_node.o blast_usage_report.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxblast.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxblast.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxblast.so ln -f .xblast.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xblast.dep rm .core_blast_dynarray.c .core_phi_gapalign.c .core_boost_erf.c .core_blast_itree.c .core_index_ungapped.c .core_ncbi_math.c .core_blast_seqsrc.c .core_blast_engine.c .core_lookup_wrap.c .core_blast_filter.c .core_gencode_singleton.c .core_hspfilter_besthit.c .core_gapinfo.c .core_spliced_hits.c .core_blast_psi.c .core_blast_hspstream_mt_utils.c .core_blast_lookup.c .core_blast_diagnostics.c .core_blast_nascan.c .core_blast_hspstream.c .core_na_ungapped.c .core_phi_extend.c .core_blast_nalookup.c .core_jumper.c .core_blast_encoding.c .core_blast_psi_priv.c .core_blast_aalookup.c .core_blast_util.c .core_blast_posit.c .core_hspfilter_mapper.c .core_hspfilter_culling.c .core_blast_program.c .core_ncbi_std.c .core_blast_traceback.c .core_blast_stat.c .core_blast_setup.c .core_link_hsps.c .core_pattern.c .core_greedy_align.c .core_lookup_util.c .core_blast_kappa.c .core_blast_hits.c .core_blast_message.c .core_blast_parameters.c .core_matrix_freq_ratios.c .core_hspfilter_collector.c .core_blast_traceback_mt_priv.c .core_aa_ungapped.c .core_phi_lookup.c .core_blast_aascan.c .core_blast_query_info.c .core_blast_gapalign.c .core_blast_seg.c .core_split_query.c .core_blast_sw.c .core_blast_tune.c .core_blast_options.c .core_blast_extend.c make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/api' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/api' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C proteinkmer -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/proteinkmer' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/proteinkmer' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/proteinkmer' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w all /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp:222: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 222 | #pragma omp parallel for num_threads(numThreads) | In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/sequtil/sequtil_convert.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/sequtil/sequtil_convert.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/sequtil/sequtil_convert.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmer.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/sequtil/sequtil_convert.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmer.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 175 | auto_ptr m_MmappedIndex; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/sequtil/sequtil_convert.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmer.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 178 | auto_ptr m_MmappedData; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/util/sequtil/sequtil_convert.hpp:34, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:488: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 488 | #pragma omp parallel for num_threads(numThreads) | In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:91: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:91: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:91: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:91: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:91: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:91: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:91: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 175 | auto_ptr m_MmappedIndex; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:91: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:91: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 178 | auto_ptr m_MmappedData; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:91: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 175 | auto_ptr m_MmappedIndex; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 178 | auto_ptr m_MmappedData; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp: In member function ‘void ncbi::blast::CBlastKmerResults::GetTSL(ncbi::blast::TSeqLocVector&, ncbi::CRef) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:75:19: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 75 | auto_ptr ssl(new SSeqLoc(*seqloc, *scope)); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:447: warning: ignoring ‘#pragma ivdep ’ [-Wunknown-pragmas] 447 | #pragma ivdep | In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 175 | auto_ptr m_MmappedIndex; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 178 | auto_ptr m_MmappedData; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp: In function ‘void ncbi::neighbor_query(const std::vector >&, const uint64_t*, std::vector >&, ncbi::blast::CMinHashFile&, int, int, double, ncbi::TBlastKmerPrelimScoreVector&, ncbi::BlastKmerStats&, int)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:807:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 807 | if (last_oid == *i) | ~~~~~~~~~^~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/proteinkmer' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/pearson.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmer.cpp -o blastkmer.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp -o blastkmerindex.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp -o blastkmeroptions.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp -o blastkmerresults.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp -o blastkmerutils.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wa/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:84: warning: ignoring ‘#pragma ivdep ’ [-Wunknown-pragmas] 84 | #pragma ivdep | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:91: warning: ignoring ‘#pragma ivdep ’ [-Wunknown-pragmas] 91 | #pragma ivdep | /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:98: warning: ignoring ‘#pragma ivdep ’ [-Wunknown-pragmas] 98 | #pragma ivdep | In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 175 | auto_ptr m_MmappedIndex; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbifile.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/mhfile.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 178 | auto_ptr m_MmappedData; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbifile.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/mhfile.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp: In member function ‘void ncbi::blast::CMinHashFile::GetMinHits(int, int&, std::vector&) const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp:77:25: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 77 | if (hits.size() < numHashes) | ~~~~~~~~~~~~^~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmer.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp:50: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 175 | auto_ptr m_MmappedIndex; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/blastkmer.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp:50: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 178 | auto_ptr m_MmappedData; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ ll -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/mhfile.cpp -o mhfile.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/pearson.cpp -o pearson.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -Wno-unused-local-typedefs /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/proteinkmer/kblastapi.cpp -o kblastapi.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libproteinkmer.so .libproteinkmer.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libproteinkmer.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC blastkmer.o blastkmerindex.o blastkmeroptions.o blastkmerresults.o blastkmerutils.o mhfile.o pearson.o kblastapi.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libproteinkmer.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libproteinkmer.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libproteinkmer.so ln -f .proteinkmer.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.proteinkmer.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/proteinkmer' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C unit_test -w all_r || exit 5 make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/proteinkmer/unit_test' make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/proteinkmer/unit_test' make[6]: *** No rule to make target '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/proteinkmer/unit_test' NOTE: skipping project "proteinkmer_unit_test" due to unmet requirements make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/proteinkmer/unit_test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/proteinkmer' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C format -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/format' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format TMPL=xblastformat -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/format' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/format' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format TMPL=xblastformat -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp: In static member function ‘static void ncbi::CBlastFormatUtil::PrintAsciiPssm(const ncbi::objects::CPssmWithParameters&, ncbi::CConstRef, ncbi::CNcbiOstream&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:205:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 205 | auto_ptr< TNcbiMatrixInt > pssm | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:207:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 207 | auto_ptr< TNcbiMatrixDouble > weighted_res_freqs | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastxml_format.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastxml_format.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastxml_format.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastxml_format.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastxml_format.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastxml_format.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:448:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 448 | auto_ptr m_ConfigFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_Reg; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp: In function ‘void ncbi::s_SeqAlignSetToXMLHits(std::__cxx11::list >&, const ncbi::objects::CSeq_align_set&, ncbi::objects::CScope*, const ncbi::CBlastFormattingMatrix*, const ncbi::TMaskedQueryRegions*, bool, int, int, ncbi::CNcbiOstream*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:501:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 501 | auto_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:501:100: warning: ‘ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)’ is deprecated [-Wdeprecated-declarations] 501 | auto_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/tempstr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objostrxml.hpp:66:26: note: declared here 66 | NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); | ^~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:1143:38: note: in definition of macro ‘NCBI_DEPRECATED_CTOR’ 1143 | # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED | ^~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp: In function ‘void ncbi::BlastXML_FormatReport(ncbi::objects::CBlastOutput&, const ncbi::IBlastXMLReportData*, ncbi::CNcbiOstream*, ncbi::SBlastXMLIncremental*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:719:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 719 | auto_ptr< CBlastFormattingMatrix > matrix(data->GetMatrix()); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp: In function ‘bool ncbi::s_SerializeAndSplitBy(const ncbi::CSerialObject&, const char*, std::string&, std::string&, bool, bool)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:785:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 785 | auto_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:785:96: warning: ‘ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)’ is deprecated [-Wdeprecated-declarations] 785 | auto_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); | ^ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiexpt.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/tempstr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/objostrxml.hpp:66:26: note: declared here 66 | NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); | ^~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbimisc.hpp:1143:38: note: in definition of macro ‘NCBI_DEPRECATED_CTOR’ 1143 | # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED | ^~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastxml2_format.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastxml2_format.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastxml2_format.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastxml2_format.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastxml2_format.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastxml2_format.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:448:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 448 | auto_ptr m_ConfigFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_Reg; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp: In function ‘void ncbi::s_WriteXML2ObjectNoHeader(ncbi::objects::blastxml2::CBlastOutput2&, ncbi::CNcbiOstream*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:720:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 720 | auto_ptr xml_out(new CBlastOStreamXml (*out_stream, eNoOwnership)); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp: In function ‘void ncbi::s_WriteXML2Object(ncbi::objects::blastxml2::CBlastOutput2&, ncbi::CNcbiOstream*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:732:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 732 | auto_ptr xml_out(new CObjectOStreamXml (*out_stream, eNoOwnership)); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp: In function ‘void ncbi::BlastXML2_PrintHeader(ncbi::CNcbiOstream*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:784:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 784 | auto_ptr xml_out(new CObjectOStreamXml (ostr, eNoOwnership)); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp: In function ‘void ncbi::s_WriteJSONObjectNoHeader(ncbi::objects::blastxml2::CBlastOutput2&, ncbi::CNcbiOstream*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:843:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 843 | auto_ptr json_out(new CBlastOStreamJson (*out_stream, eNoOwnership)); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp: In function ‘void ncbi::s_WriteJSONObject(ncbi::objects::blastxml2::CBlastOutput2&, ncbi::CNcbiOstream*)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:855:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 855 | auto_ptr json_out(new CObjectOStreamJson (*out_stream, eNoOwnership)); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:448:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 448 | auto_ptr m_ConfigFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_Reg; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/taxFormat.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/taxFormat.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:58, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp: In member function ‘virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:38: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] 155 | m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here 178 | NCBI_DEPRECATED char* GetFilterString() const; | ^~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xml2format.hpp: In member function ‘virtual std::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:39: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] 140 | m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here 178 | NCBI_DEPRECATED char* GetFilterString() const; | ^~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/build_archive.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:52: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp: At global scope: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:75, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/jsonwrapp.hpp:29, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h: In instantiation of ‘rapidjson::GenericValue* rapidjson::GenericValue::Erase(rapidjson::GenericValue::ConstValueIterator, rapidjson::GenericValue::ConstValueIterator) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; rapidjson::GenericValue::ValueIterator = rapidjson::GenericValue >*; rapidjson::GenericValue::ConstValueIterator = const rapidjson::GenericValue >*]’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:1423:48: required from here /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:1702:21: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘class rapidjson::GenericValue >’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1702 | std::memmove(pos, last, static_cast(End() - last) * sizeof(GenericValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:564:7: note: ‘class rapidjson::GenericValue >’ declared here 564 | class GenericValue { | ^~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h: In instantiation of ‘rapidjson::GenericValue::MemberIterator rapidjson::GenericValue::EraseMember(rapidjson::GenericValue::ConstMemberIterator, rapidjson::GenericValue::ConstMemberIterator) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; rapidjson::GenericValue::MemberIterator = rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >*; rapidjson::GenericValue::ConstMemberIterator = const rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >*]’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:1751:55: required from here /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:1498:21: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘struct rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >’ with no trivial copy-assignment; use copy-assignment instead [-Wclass-memaccess] 1498 | std::memmove(&*pos, &*last, static_cast(MemberEnd() - last) * sizeof(Member)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:75, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/jsonwrapp.hpp:29, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:88:8: note: ‘struct rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >’ declared here 88 | struct GenericMember { | ^~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:75, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/jsonwrapp.hpp:29, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h: In instantiation of ‘void rapidjson::GenericValue::SetObjectRaw(rapidjson::GenericValue::Member*, rapidjson::SizeType, Allocator&) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; rapidjson::GenericValue::Member = rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >; rapidjson::SizeType = unsigned int]’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:2501:55: required from ‘bool rapidjson::GenericDocument::EndObject(rapidjson::SizeType) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; rapidjson::SizeType = unsigned int]’ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1721:40: required from ‘rapidjson::GenericReader::IterativeParsingState rapidjson::GenericReader::Transit(rapidjson::GenericReader::IterativeParsingState, rapidjson::GenericReader::Token, rapidjson::GenericReader::IterativeParsingState, InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]’ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1817:58: required from ‘rapidjson::ParseResult rapidjson::GenericReader::IterativeParse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]’ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/reader.h:473:46: required from ‘rapidjson::ParseResult rapidjson::GenericReader::Parse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]’ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:2284:57: required from ‘rapidjson::GenericDocument& rapidjson::GenericDocument::ParseStream(InputStream&) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; InputStream = rapidjson::GenericStringStream >; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator]’ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:2351:55: required from ‘rapidjson::GenericDocument& rapidjson::GenericDocument::Parse(const typename SourceEncoding::Ch*) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; typename SourceEncoding::Ch = char]’ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:2285:75: required from here /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:2024:24: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘rapidjson::GenericValue >::Member’ {aka ‘struct rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >’} with no trivial copy-assignment; use copy-assignment instead [-Wclass-memaccess] 2024 | std::memcpy(m, members, count * sizeof(Member)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:75, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/jsonwrapp.hpp:29, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:88:8: note: ‘rapidjson::GenericValue >::Member’ {aka ‘struct rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >’} declared here 88 | struct GenericMember { | ^~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:75, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/jsonwrapp.hpp:29, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp:53: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h: In instantiation of ‘void rapidjson::GenericValue::SetArrayRaw(rapidjson::GenericValue*, rapidjson::SizeType, Allocator&) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; rapidjson::SizeType = unsigned int]’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:2509:54: required from ‘bool rapidjson::GenericDocument::EndArray(rapidjson::SizeType) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; rapidjson::SizeType = unsigned int]’ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1751:39: required from ‘rapidjson::GenericReader::IterativeParsingState rapidjson::GenericReader::Transit(rapidjson::GenericReader::IterativeParsingState, rapidjson::GenericReader::Token, rapidjson::GenericReader::IterativeParsingState, InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]’ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1817:58: required from ‘rapidjson::ParseResult rapidjson::GenericReader::IterativeParse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]’ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/reader.h:473:46: required from ‘rapidjson::ParseResult rapidjson::GenericReader::Parse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]’ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:2284:57: required from ‘rapidjson::GenericDocument& rapidjson::GenericDocument::ParseStream(InputStream&) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; InputStream = rapidjson::GenericStringStream >; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator]’ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:2351:55: required from ‘rapidjson::GenericDocument& rapidjson::GenericDocument::Parse(const typename SourceEncoding::Ch*) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; typename SourceEncoding::Ch = char]’ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:2285:75: required from here /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:2009:24: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘class rapidjson::GenericValue >’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 2009 | std::memcpy(e, values, count * sizeof(GenericValue)); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/misc/jsonwrapp/rapidjson11/document.h:564:7: note: ‘class rapidjson::GenericValue >’ declared here 564 | class GenericValue { | ^~~~~~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/format' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/sam.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/build_archive.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xml2format.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTFORMAT -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTFORMAT -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTFORMAT -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTFORMAT -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTFORMAT -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c+In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp: In member function ‘virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:155:38: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] 155 | m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xmlformat.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here 178 | NCBI_DEPRECATED char* GetFilterString() const; | ^~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seq/Seq_annot.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xml2format.hpp: In member function ‘virtual std::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:140:39: warning: ‘char* ncbi::blast::CBlastOptions::GetFilterString() const’ is deprecated [-Wdeprecated-declarations] 140 | m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/data4xml2format.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xml2format.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here 178 | NCBI_DEPRECATED char* GetFilterString() const; | ^~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/build_archive.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/build_archive.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/build_archive.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/build_archive.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/build_archive.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/build_archive.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/build_archive.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/build_archive.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/build_archive.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/build_archive.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/build_archive.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/build_archive.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/build_archive.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/search_strategy.hpp:178:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 178 | auto_ptr m_Data; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/build_archive.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/build_archive.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/search_strategy.hpp:181:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 181 | auto_ptr m_OptionsBuilder; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/build_archive.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:448:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 448 | auto_ptr m_ConfigFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_Reg; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/taxFormat.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/taxFormat.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:58, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/sam_formatter.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/sam.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/sam.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/sam_formatter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/sam.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/sam.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/sam_formatter.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/sam.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/sam.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/sam_formatter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/sam.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/sam.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/sam_formatter.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/sam.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/sam.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/sam_formatter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/sam.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/sam.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/sam.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/sam_formatter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/sam.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/sam.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/sam.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/sam_formatter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/sam.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/sam.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/sam.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/sam_formatter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/sam.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/sam.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/sam.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/sam_formatter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/sam.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/sam.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/sam.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/format/sam_formatter.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/sam.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/sam.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:448:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 448 | auto_ptr m_ConfigFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_Reg; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:58, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_async_format.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp: In member function ‘virtual void* CBlastAsyncFormatThread::Main()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp:122:49: warning: comparison of integer expressions of different signedness: ‘std::map >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 122 | if (m_ResultsMap.size() != currNum) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTFORMAT -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTFORMAT -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTFORMAT -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTFORMAT -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/sam.cpp -o sam.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTFORMAT -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/format/blast_async_format.cpp -o blast_async_format.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxblastformat.so .libxblastformat.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxblastformat.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o sam.o blast_async_format.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lalign_format -lblastxml -lblastxml2 -lxhtml -lxcgi -llmdb -lpthread -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxblastformat.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxblastformat.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxblastformat.so ln -f .xblastformat.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xblastformat.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/format' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/format' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C blastinput -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/blastinput' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/demo/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/demo/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/demo/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build demo/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/blastinput/demo/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput TMPL=blastinput -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/blastinput' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/blastinput' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput TMPL=blastinput -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialbase.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc_.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqloc/Seq_loc.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/blastinput' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/includIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/iterator.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:51: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:54: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:54: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:54: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:54: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:54: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp: In member function ‘virtual void ncbi::blast::CCompositionBasedStatsArgs::ExtractAlgorithmOptions(const ncbi::CArgs&, ncbi::blast::CBlastOptions&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:861:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 861 | auto_ptr ungapped(args.Exist(kArgUngapped) | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp: In member function ‘virtual void ncbi::blast::CBlastDatabaseArgs::ExtractAlgorithmOptions(const ncbi::CArgs&, ncbi::blast::CBlastOptions&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:2426:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2426 | auto_ptr decompress_stream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp: In function ‘ncbi::CArgDescriptions* ncbi::blast::SetUpCommandLineArguments(ncbi::blast::TBlastCmdLineArgs&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:3490:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 3490 | auto_ptr retval(new CArgDescriptions); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbitime.hpp:65, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp:39: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ e /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BIIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ TS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_arIn file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp: In constructor ‘ncbi::blast::CIgBlastpAppArgs::CIgBlastpAppArgs()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/igblastp_args.cpp:67:16: warning: unused variable ‘kFilterByDefault’ [-Wunused-variable] 67 | const bool kFilterByDefault = false; | ^~~~~~~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp: In member function ‘virtual void ncbi::blast::CMapperMTArgs::ExtractAlgorithmOptions(const ncbi::CArgs&, ncbi::blast::CBlastOptions&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:205:59: warning: ‘unsigned int ncbi::GetCpuCount()’ is deprecated [-Wdeprecated-declarations] 205 | const int kMaxValue = static_cast(GetCpuCount()); | ~~~~~~~~~~~^~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbifile.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_system.hpp:479:14: note: declared here 479 | unsigned int GetCpuCount(void) | ^~~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/kblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/kblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/kblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/kblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/kblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/kblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/kblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/kblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/kblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/kblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/kblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/kblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/kblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/kblastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/annot_types_ci.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/feat_ci.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ gs.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libblastinput.so .libblastinput.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libblastinput.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o blast_asn1_input.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxblast -lalign_format -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lseqdb -lxobjread -lvariation -lsubmit -lxlogging -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxutil -llmdb -lpthread -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libblastinput.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libblastinput.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libblastinput.so ln -f .blastinput.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.blastinput.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/blastinput' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C unit_test -w all_r || exit 5 make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/blastinput/unit_test' NOTE: Skipping project unit_test due to unmet requirements: Boost.Test.Included make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/blastinput/unit_test' make[6]: Nothing to be done for 'mark-as-disabled_r'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/blastinput/unit_test' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/blastinput/unit_test' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C demo -w all_r || exit 5 make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/blastinput/demo' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/blastinput/demo' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/blastinput' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C blast_sra_input -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/blast_sra_input' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/blast_sra_input' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C igblast -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/igblast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/igblast TMPL=igblast -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/igblast' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/igblast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/igblast TMPL=igblast -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/igblast/igblast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/igblast/igblast.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/igblast/igblast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/igblast/igblast.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/igblast/igblast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/igblast/igblast.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/igblast/igblast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/igblast/igblast.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/igblast/igblast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/igblast/igblast.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/igblast/igblast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/igblast/igblast.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/igblast/igblast.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/igblast/igblast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/igblast/igblast.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/igblast/igblast.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/igblast/igblast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/igblast/igblast.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/igblast/igblast.cpp: In member function ‘void ncbi::blast::CIgBlast::x_FindDJAln(ncbi::CRef&, ncbi::CRef&, std::string, bool, ncbi::objects::ENa_strand, int, int, bool)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/igblast/igblast.cpp:994:43: warning: comparison of integer expressions of different signedness: ‘ncbi::TSeqPos’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 994 | if ((*it)->GetSeqStart(1) > max_allowed_j_deletion) keep = false; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/igblast' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/igblast/igblast.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libigblast.so .libigblast.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libigblast.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC igblast.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libigblast.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libigblast.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libigblast.so ln -f .igblast.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.igblast.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/igblast' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/igblast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C gumbel_params -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/gumbel_params' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/gumbel_params' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C unit_tests -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/unit_tests' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C blast_format -w all_r || exit 5 make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/unit_tests/blast_format' NOTE: Skipping project blast_format due to unmet requirements: Boost.Test.Included make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/unit_tests/blast_format' make[6]: Nothing to be done for 'mark-as-disabled_r'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/unit_tests/blast_format' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/unit_tests/blast_format' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C blastdb -w all_r || exit 5 make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/unit_tests/blastdb' NOTE: Skipping project blastdb due to unmet requirements: Boost.Test.Included make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/unit_tests/blastdb' make[6]: Nothing to be done for 'mark-as-disabled_r'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/unit_tests/blastdb' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/unit_tests/blastdb' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C seqdb_reader -w all_r || exit 5 make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/unit_tests/seqdb_reader' NOTE: Skipping project seqdb_reader due to unmet requirements: Boost.Test.Included make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/unit_tests/seqdb_reader' make[6]: Nothing to be done for 'mark-as-disabled_r'. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/unit_tests/seqdb_reader' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/unit_tests/seqdb_reader' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C api -w all_r || exit 5 make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/unit_tests/api' NOTE: Skipping project api due to unmet requirements: Boost.Test.Included make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/unit_tests/api' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -w mark-as-disabled make[7]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/unit_tests/api' make[7]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/unit_tests/api' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -w mark-as-disabled make[7]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/unit_tests/api' make[7]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/unit_tests/api' make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast/unit_tests' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/blast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C segmask -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/segmask' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/segmask TMPL=xalgosegmask -w export-headers make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/segmask' make[4]: Nothing to be done for 'export-headers'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/segmask' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/segmask TMPL=xalgosegmask -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/segmask/segmask.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/segmask/segmask.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/segmask/segmask.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/segmask/segmask.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/segmask/segmask.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/segmask/segmask.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/segmask/segmask.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/segmask/segmask.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/segmask/segmask.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/segmask/segmask.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/segmask/segmask.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/segmask/segmask.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/segmask/segmask.cpp: In member function ‘ncbi::CSegMasker::TMaskList* ncbi::CSegMasker::operator()(const ncbi::objects::CSeqVector&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/segmask/segmask.cpp:84:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 84 | auto_ptr retval(new TMaskList); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/bioseq_handle.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/segmask/segmask.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/segmask/segmask.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/segmask' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/segmask/segmask.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/algo/segmask/segmask.cpp -o segmask.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libxalgosegmask.so .libxalgosegmask.so.stamp /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -shared -o libxalgosegmask.so -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 -fPIC segmask.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lm -lpthread /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libxalgosegmask.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libxalgosegmask.so /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libxalgosegmask.so ln -f .xalgosegmask.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.xalgosegmask.dep make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/segmask' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/segmask' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C align -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/align' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/align' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C structure -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/structure' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/structure' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C gnomon -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/gnomon' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/gnomon' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C tree -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/tree' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/tree' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C phy_tree -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/phy_tree' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/phy_tree' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C seqqa -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/seqqa' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/seqqa' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C cobalt -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/cobalt' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/cobalt' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C text -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/text' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/text' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C volume_merge -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/volume_merge' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/volume_merge' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C primer -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/primer' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/primer' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C id_mapper -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/id_mapper' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo/id_mapper' make[2]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/algo' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C misc -w all_r || exit 5 make[2]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/clog/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/clog/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/clog/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build clog/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/clog/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/grid_cgi/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/grid_cgi/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/grid_cgi/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build grid_cgi/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/grid_cgi/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/xmlwrapp/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/xmlwrapp/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/xmlwrapp/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build xmlwrapp/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/xmlwrapp/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/eutils_client/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/eutils_client/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/eutils_client/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build eutils_client/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/eutils_client/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/hydra_client/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/hydra_client/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/hydra_client/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build hydra_client/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/hydra_client/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/discrepancy/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/discrepancy/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/discrepancy/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build discrepancy/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/discrepancy/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/xmlreaders/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/xmlreaders/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/xmlreaders/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build xmlreaders/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/xmlreaders/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/hgvs/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/hgvs/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/hgvs/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build hgvs/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/hgvs/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/netstorage/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/netstorage/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/netstorage/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build netstorage/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/netstorage/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/biosample_util/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/biosample_util/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/biosample_util/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build biosample_util/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/biosample_util/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/data_loaders_util/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/data_loaders_util/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/data_loaders_util/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build data_loaders_util/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/data_loaders_util/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/lapackwrapp/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/lapackwrapp/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/lapackwrapp/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build lapackwrapp/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/lapackwrapp/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/pmcidconv_client/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/pmcidconv_client/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/pmcidconv_client/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build pmcidconv_client/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/pmcidconv_client/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/fix_pub/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/fix_pub/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/fix_pub/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build fix_pub/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/fix_pub/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/cgi_redirect/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/cgi_redirect/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/misc/cgi_redirect/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build cgi_redirect/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/cgi_redirect/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C third_party -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/third_party' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/third_party' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C third_party_static -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/third_party_static' NOTE: Skipping project third_party_static due to unmet requirements: -DLL make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/third_party_static' make[4]: Nothing to be done for 'mark-as-disabled_r'. make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/third_party_static' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/third_party_static' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C clog -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/clog' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/clog' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C grid_cgi -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/grid_cgi' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/grid_cgi' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C xmlwrapp -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/xmlwrapp' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/xmlwrapp' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C eutils_client -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/eutils_client' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/eutils_client' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C hydra_client -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/hydra_client' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/hydra_client' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C discrepancy -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/discrepancy' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/discrepancy' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C xmlreaders -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/xmlreaders' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/xmlreaders' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C hgvs -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/hgvs' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/hgvs' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C netstorage -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/netstorage' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/netstorage' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C jsonwrapp -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/jsonwrapp' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C test -w all_r || exit 5 make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/jsonwrapp/test' make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/jsonwrapp/test' make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/jsonwrapp/test' make[6]: *** No rule to make target '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/jsonwrapp/test' NOTE: skipping project "test_jsonwrapp" due to unmet requirements make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/jsonwrapp/test' make[6]: *** No rule to make target '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/jsonwrapp/test' NOTE: skipping project "test_jsonwrapp10" due to unmet requirements make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/jsonwrapp/test' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/jsonwrapp/test' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/jsonwrapp' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C biosample_util -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/biosample_util' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/biosample_util' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C data_loaders_util -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/data_loaders_util' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/data_loaders_util' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C lapackwrapp -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/lapackwrapp' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/lapackwrapp' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C pmcidconv_client -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/pmcidconv_client' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/pmcidconv_client' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C fix_pub -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/fix_pub' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/fix_pub' NCBI_BUT_EXPENDABLE=' (but expendable)' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C cgi_redirect -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/cgi_redirect' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc/cgi_redirect' make[2]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/misc' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C gui -w all_r || exit 5 make[2]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/gui' make[2]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/gui' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C app -w all_r || exit 5 make[2]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/asn2asn/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/asn2asn/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/asn2asn/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build asn2asn/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/asn2asn/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/asn2fasta/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/asn2fasta/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/asn2fasta/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build asn2fasta/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/asn2fasta/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/asn2flat/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/asn2flat/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/asn2flat/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build asn2flat/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/asn2flat/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/flat2asn/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/flat2asn/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/flat2asn/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build flat2asn/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/flat2asn/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/asnval/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/asnval/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/asnval/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build asnval/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/asnval/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/asn_cleanup/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/asn_cleanup/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/asn_cleanup/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build asn_cleanup/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/asn_cleanup/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/id1_fetch/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/id1_fetch/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/id1_fetch/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build id1_fetch/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/id1_fetch/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/convert_seq/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/convert_seq/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/convert_seq/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build convert_seq/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/convert_seq/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/nmer_repeats/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/nmer_repeats/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/nmer_repeats/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build nmer_repeats/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/nmer_repeats/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/objmgr/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/objmgr/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/objmgr/Makefile.in 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creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/idfetch/Makefile /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/mkdir -p `/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/dirname /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/pubseq_gateway/Makefile.in` test -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/pubseq_gateway/Makefile.in || /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/cp -p /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/build-system/Makefile.in.skel /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/pubseq_gateway/Makefile.in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/update_configurable.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build pubseq_gateway/Makefile config.status: creating /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/pubseq_gateway/Makefile /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C asn2asn -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/asn2asn' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/asn2asn' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C asn2fasta -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/asn2fasta' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/asn2fasta' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C asn2flat -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/asn2flat' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/asn2flat' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C flat2asn -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/flat2asn' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/flat2asn' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C asnval -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/asnval' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/asnval' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C asn_cleanup -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/asn_cleanup' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/asn_cleanup' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C id1_fetch -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/id1_fetch' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/id1_fetch' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C blast -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/Makefile.legacy_blast builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast -w all make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/legacy_blast.pl /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/legacy_blast.pl /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/legacy_blast.pl make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/Makefile.update_blastdb builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast -w all make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/update_blastdb.pl /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/update_blastdb.pl /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/update_blastdb.pl make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/Makefile.get_species_taxids builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast -w all make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/get_species_taxids.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/get_species_taxids.sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/get_species_taxids.sh make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/Makefile.cleanup-blastdb-volumes builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast -w all make[6]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/cleanup-blastdb-volumes.py /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/cleanup-blastdb-volumes.py /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/cleanup-blastdb-volumes.py make[6]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast TMPL=blast_app_util -w export-headers make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' make[5]: Nothing to be done for 'export-headers'. make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.lib.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast TMPL=blast_app_util -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:52, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/search_strategy.hpp:178:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 178 | auto_ptr m_Data; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/search_strategy.hpp:181:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 181 | auto_ptr m_OptionsBuilder; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:54: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:448:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 448 | auto_ptr m_ConfigFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:54: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_Reg; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:54: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f libblast_app_util.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib ln -f libblast_app_util.a /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/libblast_app_util.a ln -f .blast_app_util.dep /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/status/.blast_app_util.dep make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast TMPL=blastp -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:448:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 448 | auto_ptr m_ConfigFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_Reg; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:58, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastp /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastp_app.cpp -o blastp_app.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 blastp_app.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread -o blastp /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f blastp /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f blastp /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/blastp make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast TMPL=blastn -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:448:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 448 | auto_ptr m_ConfigFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_Reg; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:58, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastn_app.cpp -o blastn_app.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 blastn_app.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lblast_app_util -lxformat -lxcleanup -lvalid -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lsubmit -lxregexp -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread -o blastn /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f blastn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f blastn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/blastn make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast TMPL=blastx -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:448:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 448 | auto_ptr m_ConfigFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_Reg; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:58, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastx /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blastx_app.cpp -o blastx_app.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 blastx_app.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread -o blastx /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f blastx /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f blastx /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/blastx make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast TMPL=tblastn -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:448:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 448 | auto_ptr m_ConfigFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_Reg; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:58, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=tblastn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 tblastn_app.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread -o tblastn /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f tblastn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f tblastn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/tblastn make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast TMPL=tblastx -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:448:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 448 | auto_ptr m_ConfigFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_Reg; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:58, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=tblastx /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 tblastx_app.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread -o tblastx /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f tblastx /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f tblastx /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/tblastx make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast TMPL=psiblast -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_options.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:448:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 448 | auto_ptr m_ConfigFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_Reg; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:58, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=psiblast /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 psiblast_app.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread -o psiblast /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f psiblast /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f psiblast /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/psiblast make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast TMPL=rpsblast -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:448:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 448 | auto_ptr m_ConfigFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_Reg; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:58, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:448:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 448 | auto_ptr m_ConfigFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_Reg; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:58, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=rpsblast /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_node.cpp -o rpsblast_node.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=rpsblast /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 rpsblast_node.o rpsblast_app.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread -o rpsblast /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f rpsblast /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f rpsblast /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/rpsblast make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast TMPL=rpstblastn -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:448:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 448 | auto_ptr m_ConfigFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_Reg; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:58, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/prelim_stage.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/local_blast.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:448:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 448 | auto_ptr m_ConfigFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_Reg; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:58, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=rpstblastn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_node.cpp -o rpstblastn_node.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=rpstblastn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 rpstblastn_node.o rpstblastn_app.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread -o rpstblastn /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f rpstblastn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f rpstblastn /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/rpstblastn make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast TMPL=blast_formatter -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:448:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 448 | auto_ptr m_ConfigFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_Reg; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/taxFormat.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/taxFormat.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:58, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp: In member function ‘virtual void CBlastFormatterApp::Init()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:116:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 116 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTFORMAT -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=blast_formatter /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 blast_formatter.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread -o blast_formatter /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f blast_formatter /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f blast_formatter /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/blast_formatter make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast TMPL=blast_report -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:448:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 448 | auto_ptr m_ConfigFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_Reg; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/taxFormat.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/seqfeat__.hpp:2, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/taxon1/taxon1.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/taxFormat.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:53, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:58, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp: In member function ‘virtual void CBlastReportApp::Init()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:107:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 107 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTFORMAT -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=blast_report /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_report.cpp -o blast_report.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 blast_report.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread -o blast_report /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f blast_report /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f blast_report /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/blast_report make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast TMPL=deltablast -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/deltablast.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/deltablast.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/query_data.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/setup_factory.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/deltablast.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:448:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 448 | auto_ptr m_ConfigFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_Reg; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:58, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=deltablast /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 deltablast_app.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread -o deltablast /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f deltablast /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f deltablast /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/deltablast make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast TMPL=seedtop -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/seedtop.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/seedtop.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/seedtop.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blastp_args.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/tabular.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:448:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 448 | auto_ptr m_ConfigFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:49, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_Reg; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:58, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:40: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/blast_app_util.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp: In member function ‘virtual void CSeedTopApp::Init()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=seedtop /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 seedtop_app.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread -o seedtop /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f seedtop /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f seedtop /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/seedtop make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C convert_seq -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/convert_seq' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/convert_seq' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C nmer_repeats -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/nmer_repeats' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/nmer_repeats' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C objmgr -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/objmgr' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/objmgr' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C gi2taxid -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/gi2taxid' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/gi2taxid' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C netschedule -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/netschedule' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/netschedule' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C grid -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/grid' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/grid' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C netstorage -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/netstorage' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/netstorage' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C igblast -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/igblast' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/igblast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C winmasker -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/winmasker' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/winmasker' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker -w all make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/winmasker' /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/windowmasker_2.2.22_adapter.py make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/winmasker' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/winmasker' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker TMPL=winmasker -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:52: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 94 | objects::CFastaReader::fAllSeqIds | | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:52: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 94 | objects::CFastaReader::fAllSeqIds | | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:54: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_gen_counts.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 188 | auto_ptr< CNcbiIstream > m_InputFile; // input file | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_gen_counts.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/win_mask_util.hpp:189:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 189 | auto_ptr< CMaskReader > m_Reader; // reader used for fasta and bdb formats | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:64: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:159:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:64: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:168:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp: In member function ‘virtual void ncbi::CWinMaskApplication::Init()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:103:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr< CArgDescriptions > arg_desc( new CArgDescriptions ); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp: In member function ‘virtual int ncbi::CWinMaskApplication::Run()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:252:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 252 | auto_ptr< CSeqMasker::TMaskList > mask_info( theMasker( data ) ); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:257:21: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 257 | auto_ptr< CSeqMasker::TMaskList > dust_info( | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbictype.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistre.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_stack.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidiag.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbidbg.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:159:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:168:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp: In member function ‘ncbi::CSDustMasker::TMaskList* ncbi::CSDustMasker::operator()(const ncbi::objects::CSeqVector&, const TMaskList&)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:103:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | std::auto_ptr< TMaskList > result = duster_( | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/winmasker' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/main.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/main.cpp -o main.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=windowmasker /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 main.o win_mask_app.o win_mask_sdust_masker.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqmasks_io -lseqdb -lblastdb -ltables -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread -o windowmasker /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f windowmasker /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f windowmasker /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/windowmasker make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/winmasker' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/winmasker' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C dustmasker -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/dustmasker' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker TMPL=dustmasker -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/main.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/main.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/main.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/main.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/main.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/main.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/main.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:159:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/main.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/main.cpp:34: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:168:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/main.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:159:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/dustmask/symdust.hpp:168:14: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:52: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:58: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 94 | objects::CFastaReader::fAllSeqIds | | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:58: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 94 | objects::CFastaReader::fAllSeqIds | | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp: In member function ‘virtual void ncbi::CDustMaskApplication::Init()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:83:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 83 | auto_ptr< CArgDescriptions > arg_desc( new CArgDescriptions ); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp: At global scope: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:221:6: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 221 | std::auto_ptr< CSymDustMasker::TMaskList > | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp: In function ‘std::auto_ptr > > ncbi::GetDustMasks_SkipNs(ncbi::objects::CSeqVector&, Uint4, Uint4, Uint4)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:230:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 230 | std::auto_ptr< CSymDustMasker::TMaskList > rv(new CSymDustMasker::TMaskList); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:239:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 239 | std::auto_ptr< CSymDustMasker::TMaskList > s_mask = duster(seq, seq_start, itr->first -1); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:254:22: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 254 | std::auto_ptr< CSymDustMasker::TMaskList > s_mask = duster(seq, seq_start, seq.size() -1); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp: In member function ‘virtual int ncbi::CDustMaskApplication::Run()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:282:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 282 | auto_ptr writer(x_GetWriter()); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:301:18: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 301 | std::auto_ptr< duster_type::TMaskList > res = GetDustMasks_SkipNs(data, level, window, linker); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/dustmasker' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/main.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=dustmasker /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/main.cpp -o main.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=dustmasker /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/dustmasker/dust_mask_app.cpp -o dust_mask_app.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 main.o dust_mask_app.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxalgodustmask -lseqmasks_io -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lseqdb -lblastdb -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread -o dustmasker /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f dustmasker /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f dustmasker /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/dustmasker make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/dustmasker' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/dustmasker' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C segmasker -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/segmasker' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker TMPL=segmasker -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 94 | objects::CFastaReader::fAllSeqIds | | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: ‘ncbi::objects::CFastaReader::fAllSeqIds’ is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 94 | objects::CFastaReader::fAllSeqIds | | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) | ^~~~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp:52: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/segmask/segmask.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/segmask/segmask.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_vector.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/segmask/segmask.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp:55: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp: In member function ‘virtual void SegMaskerApplication::Init()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp:104:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 104 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp: In member function ‘virtual int SegMaskerApplication::Run()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp:225:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 225 | auto_ptr reader(x_GetReader()); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp:226:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 226 | auto_ptr writer(x_GetWriter()); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp:239:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 239 | auto_ptr masks(masker(sequence_data)); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/segmasker' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=segmasker /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/segmasker/segmasker.cpp -o segmasker.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 segmasker.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lxobjsimple -lxalgosegmask -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread -o segmasker /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f segmasker /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f segmasker /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/segmasker make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/segmasker' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/segmasker' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C blastdb -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blastdb' make[4]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blastdb' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb TMPL=blastdbcmd -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:54, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp: In member function ‘virtual void CBlastDBCmdApp::Init()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:864:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 864 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blastdb' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdbcmd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 blastdbcmd.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread -o blastdbcmd /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f blastdbcmd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f blastdbcmd /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/blastdbcmd make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blastdb' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb TMPL=makeblastdb -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/version_api.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/version.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/version_api.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/version.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/version_api.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/version.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/version_api.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/version.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/version_api.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/version.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/version_api.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/version.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/indexer.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/create_defline.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:41: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/version_api.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/version.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:364:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/version_api.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/version.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:42: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/util/sequence.hpp:867:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 867 | auto_ptr m_Gen; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/version_api.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/version.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:59: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/version_api.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/version.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:59: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/version_api.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/version.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:59: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/version_api.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/version.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:59: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/version_api.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/version.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:59: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/version_api.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/version.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:59: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/version_api.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/version.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:59: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/version_api.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/version.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:59: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/version_api.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/version.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:59: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/version_api.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/version.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:59: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/version_api.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/version.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:59: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/version_api.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/version.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp: In member function ‘virtual void CMakeBlastDBApp::Init()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:210:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 210 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/version_api.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/version.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/build_db.hpp:44, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/masked_range_set.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/masked_range_set.cpp:31: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/build_db.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/masked_range_set.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/masked_range_set.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/build_db.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/masked_range_set.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/masked_range_set.cpp:31: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/build_db.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/masked_range_set.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/masked_range_set.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/build_db.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/masked_range_set.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/masked_range_set.cpp:31: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/build_db.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/masked_range_set.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/masked_range_set.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/build_db.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/masked_range_set.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/masked_range_set.cpp:31: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/seqdb_writer/build_db.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/masked_range_set.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/masked_range_set.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blastdb' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/masked_range_set.cpp. Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=makeblastdb /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=makeblastdb /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 makeblastdb.o masked_range_set.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread -o makeblastdb /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f makeblastdb /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f makeblastdb /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/makeblastdb make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blastdb' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb TMPL=blastdb_aliastool -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:45: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp: In member function ‘virtual void CBlastDBAliasApp::Init()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:149:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 149 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blastdb' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdb_aliastool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 blastdb_aliastool.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread -o blastdb_aliastool /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f blastdb_aliastool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f blastdb_aliastool /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/blastdb_aliastool make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blastdb' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb TMPL=blastdbcheck -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:44: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:46: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:47: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp: In member function ‘virtual void CBlastDbCheckApplication::Init()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:147:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 147 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp:34: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blastdb' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdbcheck /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 blastdbcheck.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread -o blastdbcheck /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f blastdbcheck /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f blastdbcheck /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/blastdbcheck make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blastdb' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb TMPL=convert2blastmask -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:244:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | static auto_ptr m_LatLonCountryMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/BioSource.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/source_mod_parser.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:48, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objects/seqfeat/SubSource.hpp:245:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 245 | static auto_ptr m_LatLonWaterMap; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/serialimpl.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/reader_error_codes.hpp:33, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/mod_reader.hpp:35, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/readers/fasta.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:36: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/serial/impl/stltypes.hpp:62:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_aux.hpp:47, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_results.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/uniform_search.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp: In member function ‘virtual void CConvert2BlastMaskApplication::Init()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:148:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 148 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp: In member function ‘virtual int CConvert2BlastMaskApplication::Run()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:223:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 223 | auto_ptr reader(x_GetReader()); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:224:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 224 | auto_ptr writer(x_GetWriter()); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blastdb' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=convert2blastmask /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 convert2blastmask.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -llmdb -lpthread -lm -lpthread -o convert2blastmask /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f convert2blastmask /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f convert2blastmask /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/convert2blastmask make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blastdb' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb TMPL=blastdbcp -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcp.cpp:32: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcp.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcp.cpp:32: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcp.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcp.cpp:32: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcp.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcp.cpp:32: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcp.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcp.cpp:37: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcp.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcp.cpp: In member function ‘virtual void BlastdbCopyApplication::Init()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcp.cpp:107:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 107 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcp.cpp:31: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blastdb' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcp.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdbcp /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 blastdbcp.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -llmdb -lpthread -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread -o blastdbcp /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f blastdbcp /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f blastdbcp /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/blastdbcp make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blastdb' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb TMPL=makeprofiledb -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:43: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:61: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:61: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:61: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:61: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:61: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:61: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:61: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:61: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:61: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:61: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:61: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:61: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp: In member function ‘void CMakeProfileDBApp::x_SetupArgDescriptions()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:368:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 368 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp: In member function ‘void CMakeProfileDBApp::x_InitRPSDbInfo(Int4)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:722:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 722 | if (!m_RpsDbInfo.aux_file.is_open()) | ^~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:725:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 725 | string freq_str = m_OutDbName + ".freq"; | ^~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp: In member function ‘void CMakeProfileDBApp::x_RPSUpdateStatistics(ncbi::objects::CPssmWithParameters&, Int4)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:847:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 847 | auto_ptr > freq_list (CScorematPssmConverter::GetFreqRatios(seq)); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp: In member function ‘void CMakeProfileDBApp::x_UpdateFreqRatios(const ncbi::objects::CPssmWithParameters&, Int4, Int4)’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:1027:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1027 | auto_ptr > matrix (CScorematPssmConverter::GetFreqRatios(pssm_p)); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp:36: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blastdb' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=makeprofiledb /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 makeprofiledb.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread -o makeprofiledb /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f makeprofiledb /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f makeprofiledb /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/makeprofiledb make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blastdb' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb TMPL=blastdb_convert -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:49: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp: In member function ‘virtual void CBlastdbConvertApp::Init()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:119:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 119 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blastdb' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdb_convert /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_convert.cpp -o blastdb_convert.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 blastdb_convert.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread -o blastdb_convert /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f blastdb_convert /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f blastdb_convert /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/blastdb_convert make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blastdb' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -f /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/Makefile.app.tmpl srcdir=/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb TMPL=blastdb_path -w all In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:513:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 513 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:521:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 521 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/seq_feat_handle.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/scope.hpp:51, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/sseqloc.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/impl/annot_collector.hpp:526:13: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 526 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:38: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objmgr/object_manager.hpp:277:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:46, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:45, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/align_format_util.hpp:1540:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1540 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/format/blastfmtutil.hpp:41, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:50, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/objtools/align_format/showalign.hpp:654:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/algo/blast/api/blast_usage_report.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/../blast/blast_app_util.hpp:52, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:39: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/connect/ncbi_http_session.hpp:431:9: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 431 | auto_ptr m_ConnStream; | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp: In member function ‘virtual void CBlastDBCmdApp::Init()’: /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:73:5: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 73 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ In file included from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistl.hpp:221, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbi_limits.hpp:61, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistr.hpp:38, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbistd.hpp:37, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbicntr.hpp:40, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiobj.hpp:39, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiargs.hpp:84, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp_api.hpp:43, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include/corelib/ncbiapp.hpp:42, from /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp:35: /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blastdb' Updating dependency information for /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp. /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fPIC -gdwarf-3 -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc -I/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include -DNCBI_APP_BUILT_AS=blastdb_path /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/src/app/blastdb/blastdb_path.cpp -o blastdb_path.o /gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin/g++ -std=gnu++14 -Wl,-rpath,/gnu/store/930nwsiysdvy2x5zv1sf6v7ym75z8ayk-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.. -Wl,-rpath,/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,-rpath,/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -Wl,-rpath,/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -gdwarf-3 blastdb_path.o -Wl,-rpath-link,/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -L/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lpsg_client -lxconnserv -ldbapi_driver -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -L/gnu/store/pl09vk5g3cl8fxfln2hjk996pyahqk8m-bzip2-1.0.8/lib -lbz2 -L/gnu/store/slzq3zqwj75lbrg4ly51hfhbv2vhryv5-zlib-1.2.13/lib -lz -lm -lpthread -o blastdb_path /gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/sh /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/scripts/common/impl/if_diff.sh /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln -f blastdb_path /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin ln -f blastdb_path /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/blastdb_path make[5]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blastdb' make[4]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blastdb' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/blastdb' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C vecscreen -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/vecscreen' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/vecscreen' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C agpconvert -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/agpconvert' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/agpconvert' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C id2_fetch -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/id2_fetch' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/id2_fetch' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C agp_validate -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/agp_validate' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/agp_validate' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C objextract -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/objextract' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/objextract' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C bdb_env_keeper -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/bdb_env_keeper' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/bdb_env_keeper' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C nw_aligner -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/nw_aligner' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/nw_aligner' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C speedtest -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/speedtest' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/speedtest' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C idmapper -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/idmapper' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/idmapper' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C formatguess -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/formatguess' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/formatguess' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C multireader -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/multireader' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/multireader' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C read_blast_result -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/read_blast_result' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/read_blast_result' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C splign -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/splign' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/splign' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C hfilter -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/hfilter' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/hfilter' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C annotwriter -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/annotwriter' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/annotwriter' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C compart -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/compart' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/compart' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C streamtest -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/streamtest' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/streamtest' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C lds2_indexer -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/lds2_indexer' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/lds2_indexer' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C discrepancy_report -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/discrepancy_report' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/discrepancy_report' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C biosample_chk -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/biosample_chk' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/biosample_chk' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C bsdiff -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/bsdiff' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/bsdiff' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C gap_stats -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/gap_stats' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/gap_stats' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C table2asn -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/table2asn' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/table2asn' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C srcchk -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/srcchk' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/srcchk' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C tableval -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/tableval' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/tableval' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C ncbi_encrypt -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/ncbi_encrypt' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/ncbi_encrypt' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C ssub_fork -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/ssub_fork' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/ssub_fork' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C asn_cache -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/asn_cache' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/asn_cache' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C magicblast -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/magicblast' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/magicblast' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C multipattern -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/multipattern' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/multipattern' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C prt2fsm -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/prt2fsm' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/prt2fsm' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C pub_report -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/pub_report' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/pub_report' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C gff_deconcat -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/gff_deconcat' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/gff_deconcat' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C sub_fuse -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/sub_fuse' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/sub_fuse' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C feat_import -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/feat_import' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/feat_import' NCBI_BUT_EXPENDABLE=' (but expendable)' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C split_cache -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/split_cache' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/split_cache' NCBI_BUT_EXPENDABLE=' (but expendable)' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C wig2table -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/wig2table' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/wig2table' NCBI_BUT_EXPENDABLE=' (but expendable)' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C netcache -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/netcache' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/netcache' NCBI_BUT_EXPENDABLE=' (but expendable)' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C rmblastn -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/rmblastn' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/rmblastn' NCBI_BUT_EXPENDABLE=' (but expendable)' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C dblb -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/dblb' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/dblb' NCBI_BUT_EXPENDABLE=' (but expendable)' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C tls -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/tls' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/tls' NCBI_BUT_EXPENDABLE=' (but expendable)' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C idfetch -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/idfetch' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/idfetch' NCBI_BUT_EXPENDABLE=' (but expendable)' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C pubseq_gateway -w all_r || exit 5 make[3]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/pubseq_gateway' make[3]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app/pubseq_gateway' make[2]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/app' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C sample -w all_r || exit 5 make[2]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/sample' make[2]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/sample' /gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin/make -C internal -w all_r || exit 5 make[2]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/internal' make[2]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build/internal' make[1]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/build' phase `build' succeeded after 7654.7 seconds starting phase `check' test suite not run phase `check' succeeded after 0.0 seconds starting phase `install' if test -d /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/gbench; then \ make install-gbench; \ else \ make install-toolkit; \ fi make[1]: Entering directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++' /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/rm -rf /gnu/store/rkjnyj4qqvyp8259zdxk2lgka2spq7zl-blast+-2.11.0-include/include/ncbi-tools++/ncbi-tools++ /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/install -c -d /gnu/store/wsr8rn74lz13cdzl570d0cfs27ivfsdz-blast+-2.11.0/bin /gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib /gnu/store/rkjnyj4qqvyp8259zdxk2lgka2spq7zl-blast+-2.11.0-include/include/ncbi-tools++/ncbi-tools++ /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/install -c /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/bin/* /gnu/store/wsr8rn74lz13cdzl570d0cfs27ivfsdz-blast+-2.11.0/bin /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/install -c -m 644 /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/*.* /gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib if test -d /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/ncbi; then \ cp -pPR /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/lib/ncbi /gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib/; \ fi rm -f /gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib/lib*-static.a cd /gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib && \ for x in *.a; do \ /gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/ln "$x" "`/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin/basename \"$x\" .a`-static.a"; \ done for d in /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/include /tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++/build/inc; do \ cd $d && find * -name .svn -prune -o -print | \ cpio -pd /gnu/store/rkjnyj4qqvyp8259zdxk2lgka2spq7zl-blast+-2.11.0-include/include/ncbi-tools++/ncbi-tools++ ; \ done 59538 blocks 76 blocks make[1]: Leaving directory '/tmp/guix-build-blast+-2.11.0.drv-0/ncbi-blast-2.11.0+-src/c++' phase `install' succeeded after 0.7 seconds starting phase `patch-shebangs' phase `patch-shebangs' succeeded after 0.0 seconds starting phase `strip' stripping binaries in "/gnu/store/wsr8rn74lz13cdzl570d0cfs27ivfsdz-blast+-2.11.0/bin" with "strip" and flags ("--strip-unneeded" "--enable-deterministic-archives") stripping binaries in "/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib" with "strip" and flags ("--strip-unneeded" "--enable-deterministic-archives") phase `strip' succeeded after 12.2 seconds starting phase `validate-runpath' validating RUNPATH of 32 binaries in "/gnu/store/wsr8rn74lz13cdzl570d0cfs27ivfsdz-blast+-2.11.0/bin"... validating RUNPATH of 122 binaries in "/gnu/store/nyx3c4ps8iq6gvsirghxayccaf0jqv9s-blast+-2.11.0-lib/lib"... phase `validate-runpath' succeeded after 0.6 seconds starting phase `validate-documentation-location' phase `validate-documentation-location' succeeded after 0.0 seconds starting phase `delete-info-dir-file' phase `delete-info-dir-file' succeeded after 0.0 seconds starting phase `patch-dot-desktop-files' phase `patch-dot-desktop-files' succeeded after 0.0 seconds starting phase `make-dynamic-linker-cache' created '/gnu/store/wsr8rn74lz13cdzl570d0cfs27ivfsdz-blast+-2.11.0/etc/ld.so.cache' from 8 library search path entries phase `make-dynamic-linker-cache' succeeded after 8.4 seconds starting phase `install-license-files' installing 0 license files from '../c++' phase `install-license-files' succeeded after 0.0 seconds starting phase `reset-gzip-timestamps' phase `reset-gzip-timestamps' succeeded after 0.0 seconds starting phase `compress-documentation' phase `compress-documentation' succeeded after 0.0 seconds