starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/23hjrdx4p1x95s05qic122janzplcwgg-r-minimal-4.1.2/bin:/gnu/store/d8kx7i62bzcd8ladkzwrchcrd60f7bfj-tar-1.34/bin:/gnu/store/6ascvgl36zxymlpldh8x8igv7pkizi5s-gzip-1.10/bin:/gnu/store/dmca74p8b9ik05mrsnvbviflbxrz9qaw-bzip2-1.0.8/bin:/gnu/store/s3577mn5iz2gjgkrava2sm914bgbnkd8-xz-5.2.5/bin:/gnu/store/61b8q6rgdfgd2ffdnyqk6gq2ckrnm007-file-5.39/bin:/gnu/store/2mvffg3isy144py579g5ajwyjh04xbmp-diffutils-3.8/bin:/gnu/store/b34jl32gsdw4rvm78a82m4q50i6p1d7l-patch-2.7.6/bin:/gnu/store/zxaz9cg2b7x6c1z545x861zqllj8vz6h-findutils-4.8.0/bin:/gnu/store/sb75h0di8w5mhpn4wfhk7za6c7x3c97c-gawk-5.1.0/bin:/gnu/store/skrsx5h5h011al604grc3rqa2dhqp2wc-sed-4.8/bin:/gnu/store/vl9pxlycbk5ff0i7jbgyrh0rb2dl07lx-grep-3.6/bin:/gnu/store/firkqph0zalxwjv5g4cdjm4zh3kl3fax-coreutils-8.32/bin:/gnu/store/zjhq95bn5kmlhiqdsvcyy1nhyphxi8yb-make-4.3/bin:/gnu/store/7npwsymmqsb6qcn268cbdnd5558byfy2-bash-minimal-5.1.8/bin:/gnu/store/zhpqig154gpqkgc964wmdnf6b889jfsq-ld-wrapper-0/bin:/gnu/store/h8052068pq3a6rc903982ad2dd5ssxgk-binutils-2.37/bin:/gnu/store/ky9xbrj6slwvgwa4536xbs5lradbqfk5-gcc-10.3.0/bin:/gnu/store/skfhr2f8b7jnnpiarrrcjn6qx0xzfw00-glibc-2.33/bin:/gnu/store/skfhr2f8b7jnnpiarrrcjn6qx0xzfw00-glibc-2.33/sbin:/gnu/store/2l1vki4l2s2kzxnaa2zhk40j3xn1qdr5-curl-7.79.1/bin'
environment variable `R_LIBS_SITE' set to `/gnu/store/bamki25klin499943vrffvbhi6qc192i-r-bsgenome-1.62.0/site-library/:/gnu/store/15n5fn8zlzm62kyrqsz9ph17k2sjdga8-r-bsgenome-dmelanogaster-ucsc-dm3-1.4.0/site-library/:/gnu/store/zx0nvp5mwsjn3yr1qqvyi3r2rwfb6gda-r-xvector-0.34.0/site-library/:/gnu/store/qsw1fzic5k47pjq60k9h5y3gm3957qyg-r-s4vectors-0.32.3/site-library/:/gnu/store/m49wq0lqipq8hcx3vrcpw9fz38smi6mh-r-rtracklayer-1.54.0/site-library/:/gnu/store/91impny8v31wlxpypl70yx6kfa46as47-r-rsamtools-2.10.0/site-library/:/gnu/store/x1yr0k90s224dhxs3y8h1ixjfppnmm1h-r-matrixstats-0.61.0/site-library/:/gnu/store/8x0bli152mx2lic18isd49wnkl9arafi-r-iranges-2.28.0/site-library/:/gnu/store/9v0f255dfsj3sw37x6kjbkzgai9a898c-r-genomicranges-1.46.1/site-library/:/gnu/store/4n61ym5cr68i2zf0kbw9s707kgnka9bz-r-genomeinfodb-1.30.0/site-library/:/gnu/store/f513r6z213ad089bp7ygxg4pd2ra0si9-r-biostrings-2.62.0/site-library/:/gnu/store/0p4z4sdqaak5jpkmnfrvgxzhnl5vfhdm-r-biocgenerics-0.40.0/site-library/:/gnu/store/5d44nl7qvmpxs2d2h15x6zwbzsq0rax4-r-zlibbioc-1.40.0/site-library/:/gnu/store/q6wqm01wjzsg14ckz3aj1m25x5b9zx8c-r-xml-3.99-0.8/site-library/:/gnu/store/7vjm17jy0gd09j59acqblccs8qbm4ilr-r-restfulr-0.0.13/site-library/:/gnu/store/0qdkp1y9zqxk2brlk3mqzv53zs8wvbm6-r-rcurl-1.95-0.1.2/site-library/:/gnu/store/dn893r6j3inb544qsvi4a8518ikfxjgn-r-genomicalignments-1.30.0/site-library/:/gnu/store/0a7f44ai2kqgyrspdznr0zd7hf9qhssy-r-biocio-1.4.0/site-library/:/gnu/store/4pj11ha9csnaypmp1z9vps8scalwa75b-r-rhtslib-1.26.0/site-library/:/gnu/store/0bmlz9r5cbcw0jcwnhybywbmflhn66wh-r-bitops-1.0-7/site-library/:/gnu/store/lf4wlxwk5w9vmb5gr4yialdr89155795-r-biocparallel-1.28.3/site-library/:/gnu/store/c7bd00xjr0j00pwqzqxfzfhn11z6zbr9-r-genomeinfodbdata-1.2.0/site-library/:/gnu/store/412axaf2x3xgyia9bi26n9qpf6cmyyjr-r-crayon-1.4.2/site-library/:/gnu/store/j2p9j02k1snv0bda4c4byhb63m62lad4-r-yaml-2.2.1/site-library/:/gnu/store/xgdi3sm7dqfblj2pcz13ins6pn9rzh04-r-rjson-0.2.20/site-library/:/gnu/store/i2n9y18jxxvmfw61418if5dd71nqvp7k-r-summarizedexperiment-1.24.0/site-library/:/gnu/store/3gz61cnp1gm9f38fax4zbjk6xh4vjh4h-r-bh-1.78.0-0/site-library/:/gnu/store/8jl1b4nxbp9l68aar69id3d9b2dyz001-r-snow-0.4-4/site-library/:/gnu/store/5mfx4fwvlx0nca22m1blbn3sziihjqhq-r-futile-logger-1.4.3/site-library/:/gnu/store/nn024i8jyr6az0sw72gzx77mfrk84ga2-r-matrixgenerics-1.6.0/site-library/:/gnu/store/x02ssa41c31xbc7m657mp3iwq5yy4nq2-r-matrix-1.4-0/site-library/:/gnu/store/69cr8jj84409f0h8clgvi94g27wgkinb-r-delayedarray-0.20.0/site-library/:/gnu/store/kxniy4nkhql9zc9d0h839rwpsfqkkprp-r-biobase-2.54.0/site-library/:/gnu/store/ss8nvpl56gwd8x9gyp434h2q1rb9m4zi-r-lambda-r-1.2.4/site-library/:/gnu/store/7v2pm8fmnyn1i94d3jx03wlssylf94cn-r-futile-options-1.0.1/site-library/:/gnu/store/b90n9hq2mf28agq2552dkx915c9flqm0-r-lattice-0.20-45/site-library/:/gnu/store/s8w4hr3d4x98745cbdixwx757fkhl5a9-r-formatr-1.11/site-library/'
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/dmca74p8b9ik05mrsnvbviflbxrz9qaw-bzip2-1.0.8/include:/gnu/store/s3577mn5iz2gjgkrava2sm914bgbnkd8-xz-5.2.5/include:/gnu/store/61b8q6rgdfgd2ffdnyqk6gq2ckrnm007-file-5.39/include:/gnu/store/sb75h0di8w5mhpn4wfhk7za6c7x3c97c-gawk-5.1.0/include:/gnu/store/zjhq95bn5kmlhiqdsvcyy1nhyphxi8yb-make-4.3/include:/gnu/store/h8052068pq3a6rc903982ad2dd5ssxgk-binutils-2.37/include:/gnu/store/ky9xbrj6slwvgwa4536xbs5lradbqfk5-gcc-10.3.0/include:/gnu/store/skfhr2f8b7jnnpiarrrcjn6qx0xzfw00-glibc-2.33/include:/gnu/store/swpaxgk7xzgs4lkmw450wiak8iy8snsm-linux-libre-headers-5.10.35/include:/gnu/store/rhrxyws0zzq02zpk6y9hhcbiibwag5ls-zlib-1.2.11/include:/gnu/store/2l1vki4l2s2kzxnaa2zhk40j3xn1qdr5-curl-7.79.1/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/dmca74p8b9ik05mrsnvbviflbxrz9qaw-bzip2-1.0.8/include:/gnu/store/s3577mn5iz2gjgkrava2sm914bgbnkd8-xz-5.2.5/include:/gnu/store/61b8q6rgdfgd2ffdnyqk6gq2ckrnm007-file-5.39/include:/gnu/store/sb75h0di8w5mhpn4wfhk7za6c7x3c97c-gawk-5.1.0/include:/gnu/store/zjhq95bn5kmlhiqdsvcyy1nhyphxi8yb-make-4.3/include:/gnu/store/h8052068pq3a6rc903982ad2dd5ssxgk-binutils-2.37/include:/gnu/store/ky9xbrj6slwvgwa4536xbs5lradbqfk5-gcc-10.3.0/include/c++:/gnu/store/ky9xbrj6slwvgwa4536xbs5lradbqfk5-gcc-10.3.0/include:/gnu/store/skfhr2f8b7jnnpiarrrcjn6qx0xzfw00-glibc-2.33/include:/gnu/store/swpaxgk7xzgs4lkmw450wiak8iy8snsm-linux-libre-headers-5.10.35/include:/gnu/store/rhrxyws0zzq02zpk6y9hhcbiibwag5ls-zlib-1.2.11/include:/gnu/store/2l1vki4l2s2kzxnaa2zhk40j3xn1qdr5-curl-7.79.1/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/23hjrdx4p1x95s05qic122janzplcwgg-r-minimal-4.1.2/lib:/gnu/store/dmca74p8b9ik05mrsnvbviflbxrz9qaw-bzip2-1.0.8/lib:/gnu/store/s3577mn5iz2gjgkrava2sm914bgbnkd8-xz-5.2.5/lib:/gnu/store/61b8q6rgdfgd2ffdnyqk6gq2ckrnm007-file-5.39/lib:/gnu/store/sb75h0di8w5mhpn4wfhk7za6c7x3c97c-gawk-5.1.0/lib:/gnu/store/h8052068pq3a6rc903982ad2dd5ssxgk-binutils-2.37/lib:/gnu/store/skfhr2f8b7jnnpiarrrcjn6qx0xzfw00-glibc-2.33/lib:/gnu/store/66nrq0ra6d3jnsc24cms9lgzbyb9spr8-glibc-2.33-static/lib:/gnu/store/mnxbr2w45qrfi4bi7khl2yj56rjz9vbi-glibc-utf8-locales-2.33/lib:/gnu/store/rhrxyws0zzq02zpk6y9hhcbiibwag5ls-zlib-1.2.11/lib:/gnu/store/2l1vki4l2s2kzxnaa2zhk40j3xn1qdr5-curl-7.79.1/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/mnxbr2w45qrfi4bi7khl2yj56rjz9vbi-glibc-utf8-locales-2.33/lib/locale'
environment variable `SSL_CERT_DIR' unset
environment variable `SSL_CERT_FILE' unset
environment variable `CURL_CA_BUNDLE' unset
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'en_US.utf8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
BSgenome.Dmelanogaster.UCSC.dm3.masked/DESCRIPTION
BSgenome.Dmelanogaster.UCSC.dm3.masked/NAMESPACE
BSgenome.Dmelanogaster.UCSC.dm3.masked/R/
BSgenome.Dmelanogaster.UCSC.dm3.masked/R/zzz.R
BSgenome.Dmelanogaster.UCSC.dm3.masked/inst/
BSgenome.Dmelanogaster.UCSC.dm3.masked/inst/extdata/
BSgenome.Dmelanogaster.UCSC.dm3.masked/inst/extdata/chr2L.masks.rda
BSgenome.Dmelanogaster.UCSC.dm3.masked/inst/extdata/chr2LHet.masks.rda
BSgenome.Dmelanogaster.UCSC.dm3.masked/inst/extdata/chr2R.masks.rda
BSgenome.Dmelanogaster.UCSC.dm3.masked/inst/extdata/chr2RHet.masks.rda
BSgenome.Dmelanogaster.UCSC.dm3.masked/inst/extdata/chr3L.masks.rda
BSgenome.Dmelanogaster.UCSC.dm3.masked/inst/extdata/chr3LHet.masks.rda
BSgenome.Dmelanogaster.UCSC.dm3.masked/inst/extdata/chr3R.masks.rda
BSgenome.Dmelanogaster.UCSC.dm3.masked/inst/extdata/chr3RHet.masks.rda
BSgenome.Dmelanogaster.UCSC.dm3.masked/inst/extdata/chr4.masks.rda
BSgenome.Dmelanogaster.UCSC.dm3.masked/inst/extdata/chrM.masks.rda
BSgenome.Dmelanogaster.UCSC.dm3.masked/inst/extdata/chrU.masks.rda
BSgenome.Dmelanogaster.UCSC.dm3.masked/inst/extdata/chrUextra.masks.rda
BSgenome.Dmelanogaster.UCSC.dm3.masked/inst/extdata/chrX.masks.rda
BSgenome.Dmelanogaster.UCSC.dm3.masked/inst/extdata/chrXHet.masks.rda
BSgenome.Dmelanogaster.UCSC.dm3.masked/inst/extdata/chrYHet.masks.rda
BSgenome.Dmelanogaster.UCSC.dm3.masked/man/
BSgenome.Dmelanogaster.UCSC.dm3.masked/man/package.Rd
phase `unpack' succeeded after 0.0 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
phase `patch-source-shebangs' succeeded after 0.0 seconds
starting phase `patch-generated-file-shebangs'
phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `install'
* installing *source* package ‘BSgenome.Dmelanogaster.UCSC.dm3.masked’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BSgenome.Dmelanogaster.UCSC.dm3.masked)
phase `install' succeeded after 56.6 seconds
starting phase `check'
phase `check' succeeded after 0.0 seconds
starting phase `patch-shebangs'
phase `patch-shebangs' succeeded after 0.0 seconds
starting phase `strip'
phase `strip' succeeded after 0.0 seconds
starting phase `validate-runpath'
phase `validate-runpath' succeeded after 0.0 seconds
starting phase `validate-documentation-location'
phase `validate-documentation-location' succeeded after 0.0 seconds
starting phase `delete-info-dir-file'
phase `delete-info-dir-file' succeeded after 0.0 seconds
starting phase `patch-dot-desktop-files'
phase `patch-dot-desktop-files' succeeded after 0.0 seconds
starting phase `make-dynamic-linker-cache'
phase `make-dynamic-linker-cache' succeeded after 0.0 seconds
starting phase `install-license-files'
installing 0 license files from '.'
phase `install-license-files' succeeded after 0.0 seconds
starting phase `reset-gzip-timestamps'
phase `reset-gzip-timestamps' succeeded after 0.0 seconds
starting phase `compress-documentation'
phase `compress-documentation' succeeded after 0.0 seconds