starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/bin:/gnu/store/99c25918hl9pihix8hparmc96q6zrpwy-tar-1.34/bin:/gnu/store/l0yga4lrwwf74rz7fb0dadglg27ajpsx-gzip-1.10/bin:/gnu/store/ihakfb51zdgjz3v9nkj0ja9zk9ng8xzl-bzip2-1.0.8/bin:/gnu/store/fk24dx8qz1b5smnc4ljfw25xn7yjps0q-xz-5.2.5/bin:/gnu/store/vl1b3nq6gijpzbl03zq92m5dwgs17nik-file-5.39/bin:/gnu/store/h0rx6y95zin61fp5wlyjly4g9j2hma18-diffutils-3.8/bin:/gnu/store/7j8j7m0kgb7kv2fc18qvrdj7gs3jc4mx-patch-2.7.6/bin:/gnu/store/x4yglk9pn2s2ixl1b4lj151bd2yvlgww-findutils-4.8.0/bin:/gnu/store/vzq0il5z2d6ksllb525m9xaqzv829g3k-gawk-5.1.0/bin:/gnu/store/cnwr7widbi6470kfyb13krx46kz5anmy-sed-4.8/bin:/gnu/store/bx47clwnxn51m7jdwfimz4lw2fh8g21v-grep-3.6/bin:/gnu/store/9a0cjh929maqvkxn3inv6jqbxn72fkx0-coreutils-8.32/bin:/gnu/store/dhx00nrv9r52f6xivg0xa4iihpl9awyk-make-4.3/bin:/gnu/store/7s2zlc4r9wqvlh9x2gqmzm4lnmbsdzmn-bash-minimal-5.1.8/bin:/gnu/store/4bzvr16pyax9224v9r72rqxswj9931sb-ld-wrapper-0/bin:/gnu/store/v4a7zw8w52v64kw5781ypa8gjwd098jz-binutils-2.37/bin:/gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/bin:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/bin:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/sbin'
environment variable `R_LIBS_SITE' set to `/gnu/store/jpm8b6jx3wvdyqzvja53nrjqh70lh46j-r-class-7.3-20/site-library/:/gnu/store/x6s7xmxg78181i9qsw6nb4bjrfnh0d6y-r-mass-7.3-57/site-library/:/gnu/store/0nhy7f4s6izi595zzlap56axqd5ywvda-r-nnet-7.3-17/site-library/:/gnu/store/bkknz6fcxbiqpklgwh9yicnk7l5qix9r-r-prodlim-2019.11.13/site-library/:/gnu/store/dz484krijzb3r4k5k7hhm833yrsj4a2v-r-rpart-4.1.16/site-library/:/gnu/store/f2dxjsgjlfdlzm8z2nxcnawcpqg4x3mn-r-survival-3.3-1/site-library/:/gnu/store/kxk4c3sf6cim0kq46pvxn9q53r87j515-r-rcpp-1.0.8.3/site-library/:/gnu/store/3cjwva3q22n92bkwsdrm6v9hnzfi6vzl-r-lava-1.6.10/site-library/:/gnu/store/imd47za45809pdzais3ia0lxdjkhqm18-r-kernsmooth-2.23-20/site-library/:/gnu/store/4n3lm4anb2k4xwhdmzr9ra3q1w5lcx4y-r-matrix-1.4-1/site-library/:/gnu/store/yk2knafwawfw4v80c1cfirhb9ji063p3-r-squarem-2021.1/site-library/:/gnu/store/4lfx7w8g143z84vgqph3ih4yzw2y9j3i-r-progressr-0.10.1/site-library/:/gnu/store/d32z4jz8rg0byni5dv4brdfcbbf42lm0-r-numderiv-2016.8-1.1/site-library/:/gnu/store/h5pk2pxlcsi6bb1r3vgnfnivzzx2b2zf-r-future-apply-1.9.0/site-library/:/gnu/store/h0n8f70hqc3xlyvnwadp1xw3gixcsbz6-r-lattice-0.20-45/site-library/:/gnu/store/lhc5z2vkra8kbz3n6jswq5l4bj04gqiv-r-digest-0.6.29/site-library/:/gnu/store/vddh6ppfh7bwzhh2zxwa9zagmgl2xd6w-r-globals-0.15.1/site-library/:/gnu/store/ak3hjrx9xphjwk2af9a6pp8ikg7nyg98-r-future-1.26.1/site-library/:/gnu/store/7bqyjs2fb7km80s21yw09cpd9wrikllz-r-codetools-0.2-18/site-library/:/gnu/store/qbc7aflr88kms1mxavv3ng9sxjf8bli5-r-parallelly-1.32.0/site-library/:/gnu/store/fcamfvxfxhmramgdc6g2drr6qxk6s0i3-r-listenv-0.8.0/site-library/'
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/ihakfb51zdgjz3v9nkj0ja9zk9ng8xzl-bzip2-1.0.8/include:/gnu/store/fk24dx8qz1b5smnc4ljfw25xn7yjps0q-xz-5.2.5/include:/gnu/store/vl1b3nq6gijpzbl03zq92m5dwgs17nik-file-5.39/include:/gnu/store/vzq0il5z2d6ksllb525m9xaqzv829g3k-gawk-5.1.0/include:/gnu/store/dhx00nrv9r52f6xivg0xa4iihpl9awyk-make-4.3/include:/gnu/store/v4a7zw8w52v64kw5781ypa8gjwd098jz-binutils-2.37/include:/gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/include:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/include:/gnu/store/wsx4kz1gh6cpdhx393frhqknmswbggq8-linux-libre-headers-5.10.35/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/ihakfb51zdgjz3v9nkj0ja9zk9ng8xzl-bzip2-1.0.8/include:/gnu/store/fk24dx8qz1b5smnc4ljfw25xn7yjps0q-xz-5.2.5/include:/gnu/store/vl1b3nq6gijpzbl03zq92m5dwgs17nik-file-5.39/include:/gnu/store/vzq0il5z2d6ksllb525m9xaqzv829g3k-gawk-5.1.0/include:/gnu/store/dhx00nrv9r52f6xivg0xa4iihpl9awyk-make-4.3/include:/gnu/store/v4a7zw8w52v64kw5781ypa8gjwd098jz-binutils-2.37/include:/gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/include/c++:/gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/include:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/include:/gnu/store/wsx4kz1gh6cpdhx393frhqknmswbggq8-linux-libre-headers-5.10.35/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib:/gnu/store/ihakfb51zdgjz3v9nkj0ja9zk9ng8xzl-bzip2-1.0.8/lib:/gnu/store/fk24dx8qz1b5smnc4ljfw25xn7yjps0q-xz-5.2.5/lib:/gnu/store/vl1b3nq6gijpzbl03zq92m5dwgs17nik-file-5.39/lib:/gnu/store/vzq0il5z2d6ksllb525m9xaqzv829g3k-gawk-5.1.0/lib:/gnu/store/v4a7zw8w52v64kw5781ypa8gjwd098jz-binutils-2.37/lib:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/lib:/gnu/store/1s4k8h3h1ka9za4yzg0dfjnlhab5k14p-glibc-2.33-static/lib:/gnu/store/6p5m4cv8psfzy5xn5yhvhmjl261wg34m-glibc-utf8-locales-2.33/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/6p5m4cv8psfzy5xn5yhvhmjl261wg34m-glibc-utf8-locales-2.33/lib/locale'
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'en_US.utf8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
ipred/
ipred/NAMESPACE
ipred/data/
ipred/data/DLBCL.rda
ipred/data/Smoking.rda
ipred/data/GlaucomaMVF.rda
ipred/data/dystrophy.rda
ipred/man/
ipred/man/slda.Rd
ipred/man/predict.inbagg.Rd
ipred/man/print.inbagg.Rd
ipred/man/predict.ipredknn.Rd
ipred/man/inclass.Rd
ipred/man/sbrier.Rd
ipred/man/summary.inbagg.Rd
ipred/man/Smoking.Rd
ipred/man/predict.bagging.Rd
ipred/man/mypredict.lm.Rd
ipred/man/ipred-internal.Rd
ipred/man/rsurv.Rd
ipred/man/kfoldcv.Rd
ipred/man/prune.bagging.Rd
ipred/man/print.cvclass.Rd
ipred/man/predict.slda.Rd
ipred/man/ipredknn.Rd
ipred/man/bagging.Rd
ipred/man/print.bagging.Rd
ipred/man/predict.inclass.Rd
ipred/man/DLBCL.Rd
ipred/man/summary.bagging.Rd
ipred/man/varset.Rd
ipred/man/summary.inclass.Rd
ipred/man/inbagg.Rd
ipred/man/GlaucomaMVF.Rd
ipred/man/dystrophy.Rd
ipred/man/print.inclass.Rd
ipred/man/control.errorest.Rd
ipred/man/cv.Rd
ipred/man/errorest.Rd
ipred/man/bootest.Rd
ipred/DESCRIPTION
ipred/build/
ipred/build/vignette.rds
ipred/tests/
ipred/tests/ipred-segfault.R
ipred/tests/ipred-bugs.Rout.save
ipred/tests/ipred-smalltest.Rout.save
ipred/tests/ipred-smalltest.R
ipred/tests/ipred-bugs.R
ipred/src/
ipred/src/init.c
ipred/src/SdiffKM.c
ipred/vignettes/
ipred/vignettes/ipred.bib
ipred/vignettes/ipred-examples.Rnw
ipred/R/
ipred/R/csurv.R
ipred/R/print.R
ipred/R/inclass.R
ipred/R/errorest.R
ipred/R/sbrier.R
ipred/R/bootest.R
ipred/R/ipredbagg.R
ipred/R/predict.irpart.R
ipred/R/kfoldcv.R
ipred/R/predict.inclass.R
ipred/R/varset.R
ipred/R/cv.R
ipred/R/inbagg.R
ipred/R/rsurv.R
ipred/R/checkfunArgs.R
ipred/R/predict.inbagg.R
ipred/R/slda.R
ipred/R/ssubset.R
ipred/R/irpart.R
ipred/R/prune.bagging.R
ipred/R/ipredknn.R
ipred/R/predict.bagging.R
ipred/R/mypredict.lm.R
ipred/R/bagging.R
ipred/MD5
ipred/inst/
ipred/inst/doc/
ipred/inst/doc/ipred-examples.R
ipred/inst/doc/ipred-examples.pdf
ipred/inst/doc/ipred-examples.Rnw
ipred/inst/COPYRIGHTS
ipred/inst/NEWS
ipred/cleanup
phase `unpack' succeeded after 0.0 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
patch-shebang: ./cleanup: changing `/bin/sh' to `/gnu/store/7s2zlc4r9wqvlh9x2gqmzm4lnmbsdzmn-bash-minimal-5.1.8/bin/sh'
phase `patch-source-shebangs' succeeded after 0.0 seconds
starting phase `patch-generated-file-shebangs'
phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `install'
Warning message:
In normalizePath("~") :
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Warning message:
In normalizePath("~") :
  path[1]="/homeless-shelter": No such file or directory
* installing *source* package ‘ipred’ ...
file ‘cleanup’ has the wrong MD5 checksum
** using staged installation
** libs
gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c SdiffKM.c -o SdiffKM.o
gcc -I"/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
gcc -shared -L/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/lib -L/usr/local/lib -o ipred.so SdiffKM.o init.o -L/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib/R/lib -lR
installing to /gnu/store/z1nr6jsw944lng374kpkg1bb7nv0casj-r-ipred-0.9-13/site-library/00LOCK-ipred/00new/ipred/libs
** R
** data
** inst
** tests
** byte-compile and prepare package for lazy loading
Warning message:
In normalizePath("~") :
  path[1]="/homeless-shelter": No such file or directory
Warning message:
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  path[1]="/homeless-shelter": No such file or directory
** help
*** installing help indices
** building package indices
Warning message:
In normalizePath("~") :
  path[1]="/homeless-shelter": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/homeless-shelter": No such file or directory
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning message:
In normalizePath("~") :
  path[1]="/homeless-shelter": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/homeless-shelter": No such file or directory
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Warning message:
In normalizePath("~") :
  path[1]="/homeless-shelter": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/homeless-shelter": No such file or directory
** testing if installed package keeps a record of temporary installation path
* DONE (ipred)
phase `install' succeeded after 13.4 seconds
starting phase `check'
Warning message:
In normalizePath("~") :
  path[1]="/homeless-shelter": No such file or directory
Warning message:
In normalizePath("~") :
  path[1]="/homeless-shelter": No such file or directory
Testing examples for package ‘ipred’
phase `check' succeeded after 3.7 seconds
starting phase `patch-shebangs'
phase `patch-shebangs' succeeded after 0.0 seconds
starting phase `strip'
phase `strip' succeeded after 0.0 seconds
starting phase `validate-runpath'
phase `validate-runpath' succeeded after 0.0 seconds
starting phase `validate-documentation-location'
phase `validate-documentation-location' succeeded after 0.0 seconds
starting phase `delete-info-dir-file'
phase `delete-info-dir-file' succeeded after 0.0 seconds
starting phase `patch-dot-desktop-files'
phase `patch-dot-desktop-files' succeeded after 0.0 seconds
starting phase `make-dynamic-linker-cache'
phase `make-dynamic-linker-cache' succeeded after 0.0 seconds
starting phase `install-license-files'
installing 0 license files from '.'
phase `install-license-files' succeeded after 0.0 seconds
starting phase `reset-gzip-timestamps'
phase `reset-gzip-timestamps' succeeded after 0.0 seconds
starting phase `compress-documentation'
phase `compress-documentation' succeeded after 0.0 seconds