WARNING: (guile-user): imported module (guix build utils) overrides core binding `delete'
starting phase `separate-from-pid1'
build process now running as PID 18
phase `separate-from-pid1' succeeded after 0.0 seconds
starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/xf9q2qibn5vb6cy6jb3ifkrh4wql7vxy-tar-1.34/bin:/gnu/store/5g3pia8fi48qvaqhb0xqw1j5yrxfkpbm-gzip-1.13/bin:/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/bin:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/bin:/gnu/store/l1vf4qc0b70pzxqgz72sm4rj7b5fa1w0-diffutils-3.10/bin:/gnu/store/ihhhssc16ii48rds45i7v356l7p721ri-patch-2.7.6/bin:/gnu/store/w7isjvmf0qcs290vjwb7p3rjyfx0dn4s-findutils-4.9.0/bin:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/bin:/gnu/store/y8khv5c0z35xd5wh3lga1npkrg4n53wm-zstd-1.5.2/bin:/gnu/store/8mapjfzb13assv6nd4kph3csvqydk6ym-sed-4.8/bin:/gnu/store/ysla2nchzpzpr9gwhwv2ihm26hriiqxg-grep-3.11/bin:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/bin:/gnu/store/62c9pawfdpv1qrgavs8amadbwz8zfiaf-coreutils-9.1/bin:/gnu/store/lx366j1ydprzjyx6gyhjg3095m0swwqg-make-4.4.1/bin:/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin:/gnu/store/cfzwm4yq78c39iqxlr146jr2lk1rl09c-ld-wrapper-0/bin:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/bin:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/bin:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/bin:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/sbin'
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/include:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/include:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/include:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/include:/gnu/store/lx366j1ydprzjyx6gyhjg3095m0swwqg-make-4.4.1/include:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/include:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/include:/gnu/store/9xcpby78v4ydigv3s1rxc8ndyl2ni95m-linux-libre-headers-5.15.49/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/include:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/include:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/include:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/include:/gnu/store/lx366j1ydprzjyx6gyhjg3095m0swwqg-make-4.4.1/include:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/include:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include/c++:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/include:/gnu/store/9xcpby78v4ydigv3s1rxc8ndyl2ni95m-linux-libre-headers-5.15.49/include'
environment variable `OBJC_INCLUDE_PATH' set to `/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/include:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/include:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/include:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/include:/gnu/store/lx366j1ydprzjyx6gyhjg3095m0swwqg-make-4.4.1/include:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/include:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/include:/gnu/store/9xcpby78v4ydigv3s1rxc8ndyl2ni95m-linux-libre-headers-5.15.49/include'
environment variable `OBJCPLUS_INCLUDE_PATH' set to `/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/include:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/include:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/include:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/include:/gnu/store/lx366j1ydprzjyx6gyhjg3095m0swwqg-make-4.4.1/include:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/include:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include/c++:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/include:/gnu/store/9xcpby78v4ydigv3s1rxc8ndyl2ni95m-linux-libre-headers-5.15.49/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/lib:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/lib:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/lib:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/lib:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/lib:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/lib:/gnu/store/s21dvcsxf4ynf9jsip352z568knxb5hp-glibc-2.39-static/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/lib/locale'
environment variable `TZDIR' unset
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'C.UTF-8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
`/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/IndelAllele.cpp' -> `./IndelAllele.cpp'
`/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/Repeats.h' -> `./Repeats.h'
`/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/Repeats.cpp' -> `./Repeats.cpp'
`/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/SWMain.cpp' -> `./SWMain.cpp'
`/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/LeftAlign.cpp' -> `./LeftAlign.cpp'
`/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/convert.h' -> `./convert.h'
`/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/disorder.cpp' -> `./disorder.cpp'
`/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/SmithWatermanGotoh.h' -> `./SmithWatermanGotoh.h'
`/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/Makefile' -> `./Makefile'
`/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/IndelAllele.h' -> `./IndelAllele.h'
`/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/smithwaterman.cpp' -> `./smithwaterman.cpp'
`/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/examples.txt' -> `./examples.txt'
`/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/disorder.h' -> `./disorder.h'
`/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/.gitignore' -> `./.gitignore'
`/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/BandedSmithWaterman.cpp' -> `./BandedSmithWaterman.cpp'
`/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/Mosaik.h' -> `./Mosaik.h'
`/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/LICENSE' -> `./LICENSE'
`/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/libdisorder.LICENSE' -> `./libdisorder.LICENSE'
`/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/LeftAlign.h' -> `./LeftAlign.h'
`/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/BandedSmithWaterman.h' -> `./BandedSmithWaterman.h'
`/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/SmithWatermanGotoh.cpp' -> `./SmithWatermanGotoh.cpp'
phase `unpack' succeeded after 0.0 seconds
starting phase `patch-source'
phase `patch-source' succeeded after 0.0 seconds
starting phase `bootstrap'
no 'configure.ac' or anything like that, doing nothing
phase `bootstrap' succeeded after 0.0 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
phase `patch-source-shebangs' succeeded after 0.0 seconds
starting phase `patch-generated-file-shebangs'
phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `build'
g++ -O3 -c -fPIC -o disorder.o disorder.cpp -I.
g++ -O3 -c -fPIC -o BandedSmithWaterman.o BandedSmithWaterman.cpp -I.
g++ -O3 -c -fPIC -o LeftAlign.o LeftAlign.cpp -I.
g++ -O3 -c -fPIC -o Repeats.o Repeats.cpp -I.
g++ -O3 -c -fPIC -o IndelAllele.o IndelAllele.cpp -I.
g++ -O3 -c -fPIC -o smithwaterman.o smithwaterman.cpp -I.
g++ -O3 -c -fPIC -o SmithWatermanGotoh.o SmithWatermanGotoh.cpp -I.
ar rs libsw.a smithwaterman.o SmithWatermanGotoh.o disorder.o BandedSmithWaterman.o LeftAlign.o Repeats.o IndelAllele.o
g++  smithwaterman.o BandedSmithWaterman.o SmithWatermanGotoh.o disorder.o LeftAlign.o Repeats.o IndelAllele.o -I. -o smithwaterman
ld -r BandedSmithWaterman.o SmithWatermanGotoh.o LeftAlign.o Repeats.o IndelAllele.o disorder.o -o sw.o -L.
ar: creating libsw.a
#g++  -c -fPIC -o smithwaterman.cpp disorder.o BandedSmithWaterman.o SmithWatermanGotoh.o Repeats.o LeftAlign.o IndelAllele.o -I.
phase `build' succeeded after 6.7 seconds
starting phase `build-dynamic'
phase `build-dynamic' succeeded after 0.2 seconds
starting phase `check'
test suite not run
phase `check' succeeded after 0.0 seconds
starting phase `install'
phase `install' succeeded after 0.0 seconds
starting phase `patch-shebangs'
phase `patch-shebangs' succeeded after 0.0 seconds
starting phase `strip'
stripping binaries in "/gnu/store/cyjfscrgwii929pz4ibgqlzccbgspxzx-smithwaterman-0.0.0-2.2610e25/lib" with "strip" and flags ("--strip-unneeded" "--enable-deterministic-archives")
stripping binaries in "/gnu/store/cyjfscrgwii929pz4ibgqlzccbgspxzx-smithwaterman-0.0.0-2.2610e25/bin" with "strip" and flags ("--strip-unneeded" "--enable-deterministic-archives")
phase `strip' succeeded after 0.0 seconds
starting phase `validate-runpath'
validating RUNPATH of 1 binaries in "/gnu/store/cyjfscrgwii929pz4ibgqlzccbgspxzx-smithwaterman-0.0.0-2.2610e25/lib"...
validating RUNPATH of 1 binaries in "/gnu/store/cyjfscrgwii929pz4ibgqlzccbgspxzx-smithwaterman-0.0.0-2.2610e25/bin"...
phase `validate-runpath' succeeded after 0.0 seconds
starting phase `validate-documentation-location'
phase `validate-documentation-location' succeeded after 0.0 seconds
starting phase `delete-info-dir-file'
phase `delete-info-dir-file' succeeded after 0.0 seconds
starting phase `patch-dot-desktop-files'
phase `patch-dot-desktop-files' succeeded after 0.0 seconds
starting phase `make-dynamic-linker-cache'
created '/gnu/store/cyjfscrgwii929pz4ibgqlzccbgspxzx-smithwaterman-0.0.0-2.2610e25/etc/ld.so.cache' from 2 library search path entries
phase `make-dynamic-linker-cache' succeeded after 0.1 seconds
starting phase `install-license-files'
installing 1 license files from '.'
phase `install-license-files' succeeded after 0.0 seconds
starting phase `reset-gzip-timestamps'
phase `reset-gzip-timestamps' succeeded after 0.0 seconds
starting phase `compress-documentation'
phase `compress-documentation' succeeded after 0.0 seconds