starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin:/gnu/store/akfnv4b78fzwikdp4jld819vh389i8z2-python-cython-0.29.24/bin:/gnu/store/1yfs4k7ihmgql695sn6ldn86fkh9mg5g-python-nose-1.3.7/bin:/gnu/store/7frqm5ijy66f81hr8i1j6791k84lds9w-python-pytest-6.2.5/bin:/gnu/store/ch8ajf96nim65n3n42fya16xv378ygs3-htslib-1.14/bin:/gnu/store/kf9bk68q9yfdqm8g1aj55yardp967v18-samtools-1.14/bin:/gnu/store/8l708pb78fkqhh4rzafz4wk8caa6785v-lz4-1.9.3/bin:/gnu/store/5f92vxq7g120bpns2nxzi1rgwd9y2xj3-python-numpy-1.21.6/bin:/gnu/store/g2ajyl8xk9aarxrgjbng2hkj3qm2v0z2-tar-1.34/bin:/gnu/store/iixwcv3k49ks1rf34pjgfzmzyhhgwng3-gzip-1.10/bin:/gnu/store/s3hl12jxz9ybs7nsy7kq7ybzz7qnzmsg-bzip2-1.0.8/bin:/gnu/store/c8isj4jq6knv0icfgr43di6q3nvdzkx7-xz-5.2.5/bin:/gnu/store/4ic6244i3ca4b4rxc2wnrgllsidyishv-file-5.39/bin:/gnu/store/ahmmvw21p11ik80lg1f953y7fd8bqkjm-diffutils-3.8/bin:/gnu/store/z39hnrwds1dgcbpfgj8dnv2cngjb2xbl-patch-2.7.6/bin:/gnu/store/39rsx3nl4c31952jybbjb8d6idr5hx7r-findutils-4.8.0/bin:/gnu/store/690qz3fg334dpwn3pn6k59n4wc943p2b-gawk-5.1.0/bin:/gnu/store/wxgv6i8g0p24q5gcyzd0yr07s8kn9680-sed-4.8/bin:/gnu/store/xjwp2hsd9256icjjybfrmznppjicywf6-grep-3.6/bin:/gnu/store/d251rfgc9nm2clzffzhgiipdvfvzkvwi-coreutils-8.32/bin:/gnu/store/55cbpsi18mahg131nmiya6km5b4mscfa-make-4.3/bin:/gnu/store/4y5m9lb8k3qkb1y9m02sw9w9a6hacd16-bash-minimal-5.1.8/bin:/gnu/store/s2pg5k98fl2g2szg9dykxyd9zl3xihv9-ld-wrapper-0/bin:/gnu/store/rc781v4k0drhaqn90xfwwpspki5x0bvf-binutils-2.37/bin:/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/bin:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/bin:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/sbin:/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/bin'
environment variable `GUIX_PYTHONPATH' set to `/gnu/store/akfnv4b78fzwikdp4jld819vh389i8z2-python-cython-0.29.24/lib/python3.9/site-packages:/gnu/store/1yfs4k7ihmgql695sn6ldn86fkh9mg5g-python-nose-1.3.7/lib/python3.9/site-packages:/gnu/store/7frqm5ijy66f81hr8i1j6791k84lds9w-python-pytest-6.2.5/lib/python3.9/site-packages:/gnu/store/66dh99y844b8pf57h94jij7nn5w9wfi0-python-click-8.1.2/lib/python3.9/site-packages:/gnu/store/5f92vxq7g120bpns2nxzi1rgwd9y2xj3-python-numpy-1.21.6/lib/python3.9/site-packages:/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/lib/python3.9/site-packages:/gnu/store/rh5pmm5ralyl06pgfr83qlfxaav6svjr-python-wcwidth-0.1.8/lib/python3.9/site-packages:/gnu/store/hmyqhci2vvrnvjwm32l26kwgasz7in1w-python-toml-0.10.2/lib/python3.9/site-packages:/gnu/store/xqvr1b5065idb5y8jxgr42cdkiwj6l64-python-six-bootstrap-1.16.0/lib/python3.9/site-packages:/gnu/store/ls2xsqbwsha2ap65dh09f9v0q0v43d91-python-py-1.10.0/lib/python3.9/site-packages:/gnu/store/jl1g2qqlg9sjxrh649x8zp2ysy4fmwh5-python-pluggy-0.13.1/lib/python3.9/site-packages:/gnu/store/jbb1l7nqy3dskqy8i835p8wbi871dmsy-python-packaging-bootstrap-21.3/lib/python3.9/site-packages:/gnu/store/driz9p0pv29s9dlpd7r8m5r65wiia30z-python-more-itertools-8.2.0/lib/python3.9/site-packages:/gnu/store/sww1f0qbddpnj7p1pivrsva83xn7c711-python-iniconfig-1.1.1/lib/python3.9/site-packages:/gnu/store/wp31hr5sia5wydha04ijqiz2kdhck4y0-python-attrs-bootstrap-21.2.0/lib/python3.9/site-packages:/gnu/store/kw41zfr5s3ay2xva287lcpgzqa7bhvh1-python-pyparsing-3.0.6/lib/python3.9/site-packages'
environment variable `PYTHONTZPATH' unset
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/ch8ajf96nim65n3n42fya16xv378ygs3-htslib-1.14/include:/gnu/store/8l708pb78fkqhh4rzafz4wk8caa6785v-lz4-1.9.3/include:/gnu/store/s3hl12jxz9ybs7nsy7kq7ybzz7qnzmsg-bzip2-1.0.8/include:/gnu/store/c8isj4jq6knv0icfgr43di6q3nvdzkx7-xz-5.2.5/include:/gnu/store/4ic6244i3ca4b4rxc2wnrgllsidyishv-file-5.39/include:/gnu/store/690qz3fg334dpwn3pn6k59n4wc943p2b-gawk-5.1.0/include:/gnu/store/55cbpsi18mahg131nmiya6km5b4mscfa-make-4.3/include:/gnu/store/rc781v4k0drhaqn90xfwwpspki5x0bvf-binutils-2.37/include:/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/include:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/include:/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include:/gnu/store/8qv5kb2fgm4c3bf70zcg9l6hkf3qzpw9-zlib-1.2.11/include:/gnu/store/6mjww4iz4xdan74d5bbjfh7il8rngfkk-linux-libre-headers-5.10.35/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/ch8ajf96nim65n3n42fya16xv378ygs3-htslib-1.14/include:/gnu/store/8l708pb78fkqhh4rzafz4wk8caa6785v-lz4-1.9.3/include:/gnu/store/s3hl12jxz9ybs7nsy7kq7ybzz7qnzmsg-bzip2-1.0.8/include:/gnu/store/c8isj4jq6knv0icfgr43di6q3nvdzkx7-xz-5.2.5/include:/gnu/store/4ic6244i3ca4b4rxc2wnrgllsidyishv-file-5.39/include:/gnu/store/690qz3fg334dpwn3pn6k59n4wc943p2b-gawk-5.1.0/include:/gnu/store/55cbpsi18mahg131nmiya6km5b4mscfa-make-4.3/include:/gnu/store/rc781v4k0drhaqn90xfwwpspki5x0bvf-binutils-2.37/include:/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/include/c++:/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/include:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/include:/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include:/gnu/store/8qv5kb2fgm4c3bf70zcg9l6hkf3qzpw9-zlib-1.2.11/include:/gnu/store/6mjww4iz4xdan74d5bbjfh7il8rngfkk-linux-libre-headers-5.10.35/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/akfnv4b78fzwikdp4jld819vh389i8z2-python-cython-0.29.24/lib:/gnu/store/1yfs4k7ihmgql695sn6ldn86fkh9mg5g-python-nose-1.3.7/lib:/gnu/store/7frqm5ijy66f81hr8i1j6791k84lds9w-python-pytest-6.2.5/lib:/gnu/store/ch8ajf96nim65n3n42fya16xv378ygs3-htslib-1.14/lib:/gnu/store/8l708pb78fkqhh4rzafz4wk8caa6785v-lz4-1.9.3/lib:/gnu/store/66dh99y844b8pf57h94jij7nn5w9wfi0-python-click-8.1.2/lib:/gnu/store/5f92vxq7g120bpns2nxzi1rgwd9y2xj3-python-numpy-1.21.6/lib:/gnu/store/s3hl12jxz9ybs7nsy7kq7ybzz7qnzmsg-bzip2-1.0.8/lib:/gnu/store/c8isj4jq6knv0icfgr43di6q3nvdzkx7-xz-5.2.5/lib:/gnu/store/4ic6244i3ca4b4rxc2wnrgllsidyishv-file-5.39/lib:/gnu/store/690qz3fg334dpwn3pn6k59n4wc943p2b-gawk-5.1.0/lib:/gnu/store/rc781v4k0drhaqn90xfwwpspki5x0bvf-binutils-2.37/lib:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/lib:/gnu/store/4jdghmc65q7i7ib89zmvq66l0ghf7jc4-glibc-2.33-static/lib:/gnu/store/fnr1z6xsan0437r0yg48d0y8k32kqxby-glibc-utf8-locales-2.33/lib:/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/lib:/gnu/store/rh5pmm5ralyl06pgfr83qlfxaav6svjr-python-wcwidth-0.1.8/lib:/gnu/store/hmyqhci2vvrnvjwm32l26kwgasz7in1w-python-toml-0.10.2/lib:/gnu/store/xqvr1b5065idb5y8jxgr42cdkiwj6l64-python-six-bootstrap-1.16.0/lib:/gnu/store/ls2xsqbwsha2ap65dh09f9v0q0v43d91-python-py-1.10.0/lib:/gnu/store/jl1g2qqlg9sjxrh649x8zp2ysy4fmwh5-python-pluggy-0.13.1/lib:/gnu/store/jbb1l7nqy3dskqy8i835p8wbi871dmsy-python-packaging-bootstrap-21.3/lib:/gnu/store/driz9p0pv29s9dlpd7r8m5r65wiia30z-python-more-itertools-8.2.0/lib:/gnu/store/sww1f0qbddpnj7p1pivrsva83xn7c711-python-iniconfig-1.1.1/lib:/gnu/store/wp31hr5sia5wydha04ijqiz2kdhck4y0-python-attrs-bootstrap-21.2.0/lib:/gnu/store/8qv5kb2fgm4c3bf70zcg9l6hkf3qzpw9-zlib-1.2.11/lib:/gnu/store/kw41zfr5s3ay2xva287lcpgzqa7bhvh1-python-pyparsing-3.0.6/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/fnr1z6xsan0437r0yg48d0y8k32kqxby-glibc-utf8-locales-2.33/lib/locale'
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'en_US.utf8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/.gitignore' -> `./.gitignore'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/.travis.yml' -> `./.travis.yml'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/CHANGES.md' -> `./CHANGES.md'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/LICENSE' -> `./LICENSE'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/MANIFEST.in' -> `./MANIFEST.in'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/Makefile' -> `./Makefile'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/README.md' -> `./README.md'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/readthedocs.yml' -> `./readthedocs.yml'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/requirements.txt' -> `./requirements.txt'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/requirements_doc.txt' -> `./requirements_doc.txt'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/setup.py' -> `./setup.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/tests/test_dedup.py' -> `./tests/test_dedup.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/tests/test_filterbycov.py' -> `./tests/test_filterbycov.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/tests/test_flip.py' -> `./tests/test_flip.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/tests/test_headerops.py' -> `./tests/test_headerops.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/tests/test_markasdup.py' -> `./tests/test_markasdup.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/tests/test_merge.py' -> `./tests/test_merge.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/tests/test_parse.py' -> `./tests/test_parse.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/tests/test_select.py' -> `./tests/test_select.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/tests/test_sort.py' -> `./tests/test_sort.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/tests/test_split.py' -> `./tests/test_split.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/tests/test_stats.py' -> `./tests/test_stats.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/tests/data/mock.2.pairsam' -> `./tests/data/mock.2.pairsam'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/tests/data/mock.4dedup.pairsam' -> `./tests/data/mock.4dedup.pairsam'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/tests/data/mock.4filterbycov.pairs' -> `./tests/data/mock.4filterbycov.pairs'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/tests/data/mock.4flip.pairs' -> `./tests/data/mock.4flip.pairs'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/tests/data/mock.chrom.sizes' -> `./tests/data/mock.chrom.sizes'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/tests/data/mock.pairsam' -> `./tests/data/mock.pairsam'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/tests/data/mock.sam' -> `./tests/data/mock.sam'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/pairtools/__init__.py' -> `./pairtools/__init__.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/pairtools/__main__.py' -> `./pairtools/__main__.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/pairtools/_dedup.pyx' -> `./pairtools/_dedup.pyx'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/pairtools/_fileio.py' -> `./pairtools/_fileio.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/pairtools/_headerops.py' -> `./pairtools/_headerops.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/pairtools/_pairsam_format.py' -> `./pairtools/_pairsam_format.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/pairtools/pairtools_dedup.py' -> `./pairtools/pairtools_dedup.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/pairtools/pairtools_filterbycov.py' -> `./pairtools/pairtools_filterbycov.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/pairtools/pairtools_flip.py' -> `./pairtools/pairtools_flip.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/pairtools/pairtools_markasdup.py' -> `./pairtools/pairtools_markasdup.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/pairtools/pairtools_merge.py' -> `./pairtools/pairtools_merge.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/pairtools/pairtools_parse.py' -> `./pairtools/pairtools_parse.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/pairtools/pairtools_phase.py' -> `./pairtools/pairtools_phase.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/pairtools/pairtools_restrict.py' -> `./pairtools/pairtools_restrict.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/pairtools/pairtools_select.py' -> `./pairtools/pairtools_select.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/pairtools/pairtools_sort.py' -> `./pairtools/pairtools_sort.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/pairtools/pairtools_split.py' -> `./pairtools/pairtools_split.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/pairtools/pairtools_stats.py' -> `./pairtools/pairtools_stats.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/examples/example_pipeline.sh' -> `./examples/example_pipeline.sh'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/examples/example_singlecell_pipeline.sh' -> `./examples/example_singlecell_pipeline.sh'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/doc/Makefile' -> `./doc/Makefile'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/doc/cli_tools.rst' -> `./doc/cli_tools.rst'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/doc/conf.py' -> `./doc/conf.py'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/doc/formats.rst' -> `./doc/formats.rst'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/doc/index.rst' -> `./doc/index.rst'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/doc/installation.rst' -> `./doc/installation.rst'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/doc/parsing.rst' -> `./doc/parsing.rst'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/doc/quickstart.rst' -> `./doc/quickstart.rst'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/doc/sorting.rst' -> `./doc/sorting.rst'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/doc/technotes.rst' -> `./doc/technotes.rst'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/doc/_static/hic-processing-pipeline.png' -> `./doc/_static/hic-processing-pipeline.png'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/doc/_static/hic-processing-pipeline.svg' -> `./doc/_static/hic-processing-pipeline.svg'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/doc/_static/read-vs-alignment-vs-pairs.svg' -> `./doc/_static/read-vs-alignment-vs-pairs.svg'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/doc/_static/read_pair_MU.png' -> `./doc/_static/read_pair_MU.png'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/doc/_static/read_pair_MU_MM_NM.png' -> `./doc/_static/read_pair_MU_MM_NM.png'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/doc/_static/read_pair_NU.png' -> `./doc/_static/read_pair_NU.png'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/doc/_static/read_pair_NU_NN.png' -> `./doc/_static/read_pair_NU_NN.png'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/doc/_static/read_pair_UR.png' -> `./doc/_static/read_pair_UR.png'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/doc/_static/read_pair_UR_MorN.png' -> `./doc/_static/read_pair_UR_MorN.png'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/doc/_static/read_pair_UR_criteria.png' -> `./doc/_static/read_pair_UR_criteria.png'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/doc/_static/read_pair_WW.png' -> `./doc/_static/read_pair_WW.png'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/doc/_static/read_pair_gaps_vs_null_alignment.png' -> `./doc/_static/read_pair_gaps_vs_null_alignment.png'
`/gnu/store/vvhiwyw51k5afxz9ncksbm4r4ix2ds2h-python-pairtools-0.3.0-checkout/doc/_static/terminology.png' -> `./doc/_static/terminology.png'
phase `unpack' succeeded after 0.0 seconds
starting phase `fix-references'
phase `fix-references' succeeded after 0.0 seconds
starting phase `ensure-no-mtimes-pre-1980'
phase `ensure-no-mtimes-pre-1980' succeeded after 0.0 seconds
starting phase `enable-bytecode-determinism'
phase `enable-bytecode-determinism' succeeded after 0.0 seconds
starting phase `ensure-no-cythonized-files'
phase `ensure-no-cythonized-files' succeeded after 0.0 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
patch-shebang: ./doc/conf.py: changing `/usr/bin/env python3' to `/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/bin/python3'
patch-shebang: ./examples/example_pipeline.sh: changing `/usr/bin/env bash' to `/gnu/store/4y5m9lb8k3qkb1y9m02sw9w9a6hacd16-bash-minimal-5.1.8/bin/bash'
patch-shebang: ./examples/example_singlecell_pipeline.sh: changing `/usr/bin/env bash' to `/gnu/store/4y5m9lb8k3qkb1y9m02sw9w9a6hacd16-bash-minimal-5.1.8/bin/bash'
patch-shebang: ./pairtools/pairtools_dedup.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./pairtools/pairtools_filterbycov.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./pairtools/pairtools_markasdup.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./pairtools/pairtools_merge.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./pairtools/pairtools_parse.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./pairtools/pairtools_restrict.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./pairtools/pairtools_sort.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./pairtools/pairtools_split.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./setup.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
phase `patch-source-shebangs' succeeded after 0.0 seconds
starting phase `patch-generated-file-shebangs'
phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `build'
running "python setup.py" with command "build" and parameters ()
/gnu/store/akfnv4b78fzwikdp4jld819vh389i8z2-python-cython-0.29.24/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/guix-build-python-pairtools-0.3.0.drv-0/source/pairtools/_dedup.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
Compiling pairtools/_dedup.pyx because it changed.
[1/1] Cythonizing pairtools/_dedup.pyx
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.9
creating build/lib.linux-x86_64-3.9/pairtools
copying pairtools/__init__.py -> build/lib.linux-x86_64-3.9/pairtools
copying pairtools/__main__.py -> build/lib.linux-x86_64-3.9/pairtools
copying pairtools/_fileio.py -> build/lib.linux-x86_64-3.9/pairtools
copying pairtools/_headerops.py -> build/lib.linux-x86_64-3.9/pairtools
copying pairtools/_pairsam_format.py -> build/lib.linux-x86_64-3.9/pairtools
copying pairtools/pairtools_flip.py -> build/lib.linux-x86_64-3.9/pairtools
copying pairtools/pairtools_phase.py -> build/lib.linux-x86_64-3.9/pairtools
copying pairtools/pairtools_select.py -> build/lib.linux-x86_64-3.9/pairtools
copying pairtools/pairtools_stats.py -> build/lib.linux-x86_64-3.9/pairtools
copying pairtools/pairtools_dedup.py -> build/lib.linux-x86_64-3.9/pairtools
copying pairtools/pairtools_filterbycov.py -> build/lib.linux-x86_64-3.9/pairtools
copying pairtools/pairtools_markasdup.py -> build/lib.linux-x86_64-3.9/pairtools
copying pairtools/pairtools_merge.py -> build/lib.linux-x86_64-3.9/pairtools
copying pairtools/pairtools_parse.py -> build/lib.linux-x86_64-3.9/pairtools
copying pairtools/pairtools_restrict.py -> build/lib.linux-x86_64-3.9/pairtools
copying pairtools/pairtools_sort.py -> build/lib.linux-x86_64-3.9/pairtools
copying pairtools/pairtools_split.py -> build/lib.linux-x86_64-3.9/pairtools
warning: build_py: byte-compiling is disabled, skipping.

running build_ext
building 'pairtools._dedup' extension
creating build/temp.linux-x86_64-3.9
creating build/temp.linux-x86_64-3.9/pairtools
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -I/gnu/store/5f92vxq7g120bpns2nxzi1rgwd9y2xj3-python-numpy-1.21.6/lib/python3.9/site-packages/numpy/core/include -I/gnu/store/5f92vxq7g120bpns2nxzi1rgwd9y2xj3-python-numpy-1.21.6/lib/python3.9/site-packages/numpy/core/include -c pairtools/_dedup.c -o build/temp.linux-x86_64-3.9/pairtools/_dedup.o
In file included from /gnu/store/5f92vxq7g120bpns2nxzi1rgwd9y2xj3-python-numpy-1.21.6/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
                 from /gnu/store/5f92vxq7g120bpns2nxzi1rgwd9y2xj3-python-numpy-1.21.6/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /gnu/store/5f92vxq7g120bpns2nxzi1rgwd9y2xj3-python-numpy-1.21.6/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from pairtools/_dedup.c:633:
/gnu/store/5f92vxq7g120bpns2nxzi1rgwd9y2xj3-python-numpy-1.21.6/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
gcc -pthread -shared -Wl,-rpath=/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/lib -fno-semantic-interposition build/temp.linux-x86_64-3.9/pairtools/_dedup.o -L/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/lib -o build/lib.linux-x86_64-3.9/pairtools/_dedup.cpython-39-x86_64-linux-gnu.so
phase `build' succeeded after 25.2 seconds
starting phase `install'
running "python setup.py" with command "install" and parameters ("--prefix=/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0" "--no-compile" "--single-version-externally-managed" "--root=/")
running install
running build
running build_py
warning: build_py: byte-compiling is disabled, skipping.

running build_ext
running install_lib
creating /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0
creating /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib
creating /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9
creating /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages
creating /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools
copying build/lib.linux-x86_64-3.9/pairtools/__init__.py -> /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools
copying build/lib.linux-x86_64-3.9/pairtools/__main__.py -> /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools
copying build/lib.linux-x86_64-3.9/pairtools/_fileio.py -> /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools
copying build/lib.linux-x86_64-3.9/pairtools/_headerops.py -> /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools
copying build/lib.linux-x86_64-3.9/pairtools/_pairsam_format.py -> /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools
copying build/lib.linux-x86_64-3.9/pairtools/pairtools_flip.py -> /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools
copying build/lib.linux-x86_64-3.9/pairtools/pairtools_phase.py -> /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools
copying build/lib.linux-x86_64-3.9/pairtools/pairtools_select.py -> /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools
copying build/lib.linux-x86_64-3.9/pairtools/pairtools_stats.py -> /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools
copying build/lib.linux-x86_64-3.9/pairtools/pairtools_dedup.py -> /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools
copying build/lib.linux-x86_64-3.9/pairtools/pairtools_filterbycov.py -> /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools
copying build/lib.linux-x86_64-3.9/pairtools/pairtools_markasdup.py -> /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools
copying build/lib.linux-x86_64-3.9/pairtools/pairtools_merge.py -> /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools
copying build/lib.linux-x86_64-3.9/pairtools/pairtools_parse.py -> /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools
copying build/lib.linux-x86_64-3.9/pairtools/pairtools_restrict.py -> /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools
copying build/lib.linux-x86_64-3.9/pairtools/pairtools_sort.py -> /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools
copying build/lib.linux-x86_64-3.9/pairtools/pairtools_split.py -> /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools
copying build/lib.linux-x86_64-3.9/pairtools/_dedup.cpython-39-x86_64-linux-gnu.so -> /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools
warning: install_lib: byte-compiling is disabled, skipping.

running install_egg_info
running egg_info
creating pairtools.egg-info
writing pairtools.egg-info/PKG-INFO
writing dependency_links to pairtools.egg-info/dependency_links.txt
writing entry points to pairtools.egg-info/entry_points.txt
writing requirements to pairtools.egg-info/requires.txt
writing top-level names to pairtools.egg-info/top_level.txt
writing manifest file 'pairtools.egg-info/SOURCES.txt'
reading manifest file 'pairtools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
no previously-included directories found matching 'doc/_build'
no previously-included directories found matching 'doc/_templates'
warning: no files found matching '*.pxd' anywhere in distribution
warning: no previously-included files matching '__pycache__/*' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '*.pyd' found anywhere in distribution
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '.git*' found anywhere in distribution
warning: no previously-included files matching '.deps/*' found anywhere in distribution
warning: no previously-included files matching '.DS_Store' found anywhere in distribution
adding license file 'LICENSE'
writing manifest file 'pairtools.egg-info/SOURCES.txt'
Copying pairtools.egg-info to /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools-0.3.0-py3.9.egg-info
running install_scripts
Installing pairtools script to /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/bin
Listing '/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0'...
Listing '/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/bin'...
Listing '/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib'...
Listing '/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9'...
Listing '/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages'...
Listing '/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools'...
Compiling '/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools/__init__.py'...
Compiling '/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools/__main__.py'...
Compiling '/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools/_fileio.py'...
Compiling '/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools/_headerops.py'...
Compiling '/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools/_pairsam_format.py'...
Compiling '/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools/pairtools_dedup.py'...
Compiling '/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools/pairtools_filterbycov.py'...
Compiling '/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools/pairtools_flip.py'...
Compiling '/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools/pairtools_markasdup.py'...
Compiling '/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools/pairtools_merge.py'...
Compiling '/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools/pairtools_parse.py'...
Compiling '/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools/pairtools_phase.py'...
Compiling '/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools/pairtools_restrict.py'...
Compiling '/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools/pairtools_select.py'...
Compiling '/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools/pairtools_sort.py'...
Compiling '/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools/pairtools_split.py'...
Compiling '/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools/pairtools_stats.py'...
Listing '/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools-0.3.0-py3.9.egg-info'...
phase `install' succeeded after 2.3 seconds
starting phase `add-install-to-pythonpath'
phase `add-install-to-pythonpath' succeeded after 0.0 seconds
starting phase `add-install-to-path'
phase `add-install-to-path' succeeded after 0.0 seconds
starting phase `wrap'
find-files: /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/sbin: No such file or directory
phase `wrap' succeeded after 0.0 seconds
starting phase `check'
============================= test session starts ==============================
platform linux -- Python 3.9.9, pytest-6.2.5, py-1.10.0, pluggy-0.13.1 -- /gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python
cachedir: .pytest_cache
hypothesis profile 'default' -> database=DirectoryBasedExampleDatabase('/tmp/.hypothesis/examples')
rootdir: /tmp
plugins: hypothesis-6.0.2
collecting ... collected 25 items

guix-build-python-pairtools-0.3.0.drv-0/source/tests/test_dedup.py::test_mock_pairsam PASSED [  4%]
guix-build-python-pairtools-0.3.0.drv-0/source/tests/test_filterbycov.py::test_mock_pairs PASSED [  8%]
guix-build-python-pairtools-0.3.0.drv-0/source/tests/test_flip.py::test_flip PASSED [ 12%]
guix-build-python-pairtools-0.3.0.drv-0/source/tests/test_headerops.py::test_make_standard_header PASSED [ 16%]
guix-build-python-pairtools-0.3.0.drv-0/source/tests/test_headerops.py::test_samheaderops PASSED [ 20%]
guix-build-python-pairtools-0.3.0.drv-0/source/tests/test_headerops.py::test_merge_pairheaders PASSED [ 24%]
guix-build-python-pairtools-0.3.0.drv-0/source/tests/test_headerops.py::test_merge_different_pairheaders PASSED [ 28%]
guix-build-python-pairtools-0.3.0.drv-0/source/tests/test_headerops.py::test_force_merge_pairheaders PASSED [ 32%]
guix-build-python-pairtools-0.3.0.drv-0/source/tests/test_headerops.py::test_merge_samheaders PASSED [ 36%]
guix-build-python-pairtools-0.3.0.drv-0/source/tests/test_headerops.py::test_merge_headers PASSED [ 40%]
guix-build-python-pairtools-0.3.0.drv-0/source/tests/test_markasdup.py::test_mock_pairsam PASSED [ 44%]
guix-build-python-pairtools-0.3.0.drv-0/source/tests/test_merge.py::test_mock_pairsam PASSED [ 48%]
guix-build-python-pairtools-0.3.0.drv-0/source/tests/test_parse.py::test_python_version PASSED [ 52%]
guix-build-python-pairtools-0.3.0.drv-0/source/tests/test_parse.py::test_parse_cigar PASSED [ 56%]
guix-build-python-pairtools-0.3.0.drv-0/source/tests/test_parse.py::test_parse_algn PASSED [ 60%]
guix-build-python-pairtools-0.3.0.drv-0/source/tests/test_parse.py::test_mock_sam PASSED [ 64%]
guix-build-python-pairtools-0.3.0.drv-0/source/tests/test_select.py::test_preserve PASSED [ 68%]
guix-build-python-pairtools-0.3.0.drv-0/source/tests/test_select.py::test_equal PASSED [ 72%]
guix-build-python-pairtools-0.3.0.drv-0/source/tests/test_select.py::test_csv PASSED [ 76%]
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guix-build-python-pairtools-0.3.0.drv-0/source/tests/test_select.py::test_regex PASSED [ 84%]
guix-build-python-pairtools-0.3.0.drv-0/source/tests/test_select.py::test_chrom_subset PASSED [ 88%]
guix-build-python-pairtools-0.3.0.drv-0/source/tests/test_sort.py::test_mock_pairsam PASSED [ 92%]
guix-build-python-pairtools-0.3.0.drv-0/source/tests/test_split.py::test_split PASSED [ 96%]
guix-build-python-pairtools-0.3.0.drv-0/source/tests/test_stats.py::test_mock_pairsam PASSED [100%]

=============================== warnings summary ===============================
../gnu/store/1yfs4k7ihmgql695sn6ldn86fkh9mg5g-python-nose-1.3.7/lib/python3.9/site-packages/nose/importer.py:12
  /gnu/store/1yfs4k7ihmgql695sn6ldn86fkh9mg5g-python-nose-1.3.7/lib/python3.9/site-packages/nose/importer.py:12: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
    from imp import find_module, load_module, acquire_lock, release_lock

../gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools/pairtools_stats.py:10
  /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages/pairtools/pairtools_stats.py:10: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.10 it will stop working
    from collections import OrderedDict, Mapping

-- Docs: https://docs.pytest.org/en/stable/warnings.html
======================= 25 passed, 2 warnings in 11.59s ========================
phase `check' succeeded after 13.5 seconds
starting phase `sanity-check'
validating 'pairtools' /gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib/python3.9/site-packages
...checking requirements: OK
...trying to load module pairtools: OK
...trying to load endpoint console_scripts pairtools: OK
phase `sanity-check' succeeded after 0.6 seconds
starting phase `patch-shebangs'
phase `patch-shebangs' succeeded after 0.0 seconds
starting phase `rename-pth-file'
phase `rename-pth-file' succeeded after 0.0 seconds
starting phase `strip'
stripping binaries in "/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib" with "strip" and flags ("--strip-unneeded" "--enable-deterministic-archives")
stripping binaries in "/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/bin" with "strip" and flags ("--strip-unneeded" "--enable-deterministic-archives")
phase `strip' succeeded after 0.0 seconds
starting phase `validate-runpath'
validating RUNPATH of 1 binaries in "/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/lib"...
validating RUNPATH of 0 binaries in "/gnu/store/zprnd9vjxwwflhvkhrc3qd54wpmasisl-python-pairtools-0.3.0/bin"...
phase `validate-runpath' succeeded after 0.0 seconds
starting phase `validate-documentation-location'
phase `validate-documentation-location' succeeded after 0.0 seconds
starting phase `delete-info-dir-file'
phase `delete-info-dir-file' succeeded after 0.0 seconds
starting phase `patch-dot-desktop-files'
phase `patch-dot-desktop-files' succeeded after 0.0 seconds
starting phase `make-dynamic-linker-cache'
phase `make-dynamic-linker-cache' succeeded after 0.0 seconds
starting phase `install-license-files'
installing 1 license files from '.'
phase `install-license-files' succeeded after 0.0 seconds
starting phase `reset-gzip-timestamps'
phase `reset-gzip-timestamps' succeeded after 0.0 seconds
starting phase `compress-documentation'
phase `compress-documentation' succeeded after 0.0 seconds