starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/11pcv2ccirb9lr6ri1gkdfw89imhxv5w-cmake-minimal-3.16.5/bin:/gnu/store/qxq9kjrw1bzr7pqyihp62w5cnalqlani-cxxtest-4.4/bin:/gnu/store/gd65f0jz8ja85r7marnjkpybf86zd57x-python-minimal-3.8.2/bin:/gnu/store/hjqd2irmhgdb0kcbxaciar8vkkhkb62i-pkg-config-0.29.2/bin:/gnu/store/z62x4dzlkgbf08sma30vyyz91hgz6fjl-guile-2.2.7/bin:/gnu/store/ggfdxvdgbrjvg2cx3mm7yv5j1y433b01-tar-1.32/bin:/gnu/store/ink6zpk9adb2k2w6a0qif3d45vazl7dv-gzip-1.10/bin:/gnu/store/n8dfjyw11airbnfzz192p9bdbgf31kvj-bzip2-1.0.8/bin:/gnu/store/ggq21is2vyq1jkkqrs90brmwayc4rnmy-xz-5.2.4/bin:/gnu/store/qlxznrl2zzivcln9zgyzw2zshqkjirfs-file-5.38/bin:/gnu/store/yl67anl7279qzrd3kxzj97541jzr2k3d-diffutils-3.7/bin:/gnu/store/w5n1p8kj9zn4zmjhr0bjbknakxij67w2-patch-2.7.6/bin:/gnu/store/x03dmf3xhi3il3mx383zpl4zic38iz1p-findutils-4.7.0/bin:/gnu/store/j80hcnd9p1hh0yb5j1r0gn4vd329a78n-gawk-5.0.1/bin:/gnu/store/wk5vdnms96n2iqfpqyg9gl5lhg8vdc32-sed-4.8/bin:/gnu/store/f3qp8l7f6kmfrvwnyix35kax2lv7lmnb-grep-3.4/bin:/gnu/store/wiv74mq31s0vppzm99qwnjkd8xa3albw-coreutils-8.32/bin:/gnu/store/j7fqszmnydxix8l35d7l3b7dj44qjrw4-make-4.3/bin:/gnu/store/7sfbiqh21h90bc6zi8br1xh60m6qgdd5-bash-minimal-5.0.16/bin:/gnu/store/5m8wvcahy3dgpyhxlq5aq85zbvh5jqfz-ld-wrapper-0/bin:/gnu/store/5371r5kyj50l6176lg6jbfzgfgb2xh14-binutils-2.34/bin:/gnu/store/ap7hgyv4rjqmhg4a6cb6cypsh3g1f5q4-gcc-7.5.0/bin:/gnu/store/cb88z63hyg1icd2kkahiink2p291mhr2-glibc-2.31/bin:/gnu/store/cb88z63hyg1icd2kkahiink2p291mhr2-glibc-2.31/sbin'
environment variable `CMAKE_PREFIX_PATH' set to `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/:/gnu/store/11pcv2ccirb9lr6ri1gkdfw89imhxv5w-cmake-minimal-3.16.5/:/gnu/store/qxq9kjrw1bzr7pqyihp62w5cnalqlani-cxxtest-4.4/:/gnu/store/gd65f0jz8ja85r7marnjkpybf86zd57x-python-minimal-3.8.2/:/gnu/store/hjqd2irmhgdb0kcbxaciar8vkkhkb62i-pkg-config-0.29.2/:/gnu/store/f0qwvrd47nb9df39x6r9pr3p1lip00xj-atomspace-5.0.3-1.86c848d/:/gnu/store/r9immc4b2gjm77d91wdc8mywji46aqnw-cogutil-2.0.3-1.b07b41b/:/gnu/store/86f0qkg0ig058r2vh8hlxvy4k07f0rzy-gmp-6.2.0/:/gnu/store/z62x4dzlkgbf08sma30vyyz91hgz6fjl-guile-2.2.7/:/gnu/store/ggfdxvdgbrjvg2cx3mm7yv5j1y433b01-tar-1.32/:/gnu/store/ink6zpk9adb2k2w6a0qif3d45vazl7dv-gzip-1.10/:/gnu/store/n8dfjyw11airbnfzz192p9bdbgf31kvj-bzip2-1.0.8/:/gnu/store/ggq21is2vyq1jkkqrs90brmwayc4rnmy-xz-5.2.4/:/gnu/store/qlxznrl2zzivcln9zgyzw2zshqkjirfs-file-5.38/:/gnu/store/yl67anl7279qzrd3kxzj97541jzr2k3d-diffutils-3.7/:/gnu/store/w5n1p8kj9zn4zmjhr0bjbknakxij67w2-patch-2.7.6/:/gnu/store/x03dmf3xhi3il3mx383zpl4zic38iz1p-findutils-4.7.0/:/gnu/store/j80hcnd9p1hh0yb5j1r0gn4vd329a78n-gawk-5.0.1/:/gnu/store/wk5vdnms96n2iqfpqyg9gl5lhg8vdc32-sed-4.8/:/gnu/store/f3qp8l7f6kmfrvwnyix35kax2lv7lmnb-grep-3.4/:/gnu/store/wiv74mq31s0vppzm99qwnjkd8xa3albw-coreutils-8.32/:/gnu/store/j7fqszmnydxix8l35d7l3b7dj44qjrw4-make-4.3/:/gnu/store/7sfbiqh21h90bc6zi8br1xh60m6qgdd5-bash-minimal-5.0.16/:/gnu/store/5m8wvcahy3dgpyhxlq5aq85zbvh5jqfz-ld-wrapper-0/:/gnu/store/5371r5kyj50l6176lg6jbfzgfgb2xh14-binutils-2.34/:/gnu/store/ap7hgyv4rjqmhg4a6cb6cypsh3g1f5q4-gcc-7.5.0/:/gnu/store/cb88z63hyg1icd2kkahiink2p291mhr2-glibc-2.31/:/gnu/store/z7hanmdmdalqh1v0y7z8ilinfhyfh91d-glibc-2.31-static/:/gnu/store/4xjcx6g4i229hzzqpqak6vw9bvqh88gi-glibc-utf8-locales-2.31/:/gnu/store/7jxfxdql4d1l42ylrzjvpa1a7yaya192-python-ply-3.11/:/gnu/store/zy38sp3pl92cw6cx82dvsg0mhlm2amyw-libgc-8.0.4/:/gnu/store/kwz90ygvf7qr647gvpiiy3fr54wvv5nd-libltdl-2.4.6/:/gnu/store/nzgd6xzgfkjfr65m5ds613ls0k8gg84v-libunistring-0.9.10/:/gnu/store/nkpdg3jwllrsh7wbkzgflkcpyjn5wp0q-linux-libre-headers-5.4.20/'
environment variable `SSL_CERT_DIR' unset
environment variable `SSL_CERT_FILE' unset
environment variable `PYTHONPATH' set to `/gnu/store/qxq9kjrw1bzr7pqyihp62w5cnalqlani-cxxtest-4.4/lib/python3.8/site-packages:/gnu/store/gd65f0jz8ja85r7marnjkpybf86zd57x-python-minimal-3.8.2/lib/python3.8/site-packages:/gnu/store/7jxfxdql4d1l42ylrzjvpa1a7yaya192-python-ply-3.11/lib/python3.8/site-packages'
environment variable `PKG_CONFIG_PATH' set to `/gnu/store/gd65f0jz8ja85r7marnjkpybf86zd57x-python-minimal-3.8.2/lib/pkgconfig:/gnu/store/86f0qkg0ig058r2vh8hlxvy4k07f0rzy-gmp-6.2.0/lib/pkgconfig:/gnu/store/z62x4dzlkgbf08sma30vyyz91hgz6fjl-guile-2.2.7/lib/pkgconfig:/gnu/store/ggq21is2vyq1jkkqrs90brmwayc4rnmy-xz-5.2.4/lib/pkgconfig:/gnu/store/zy38sp3pl92cw6cx82dvsg0mhlm2amyw-libgc-8.0.4/lib/pkgconfig'
environment variable `GUILE_LOAD_PATH' set to `/gnu/store/f0qwvrd47nb9df39x6r9pr3p1lip00xj-atomspace-5.0.3-1.86c848d/share/guile/site/2.2'
environment variable `GUILE_LOAD_COMPILED_PATH' unset
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/qxq9kjrw1bzr7pqyihp62w5cnalqlani-cxxtest-4.4/include:/gnu/store/gd65f0jz8ja85r7marnjkpybf86zd57x-python-minimal-3.8.2/include:/gnu/store/f0qwvrd47nb9df39x6r9pr3p1lip00xj-atomspace-5.0.3-1.86c848d/include:/gnu/store/r9immc4b2gjm77d91wdc8mywji46aqnw-cogutil-2.0.3-1.b07b41b/include:/gnu/store/86f0qkg0ig058r2vh8hlxvy4k07f0rzy-gmp-6.2.0/include:/gnu/store/z62x4dzlkgbf08sma30vyyz91hgz6fjl-guile-2.2.7/include:/gnu/store/n8dfjyw11airbnfzz192p9bdbgf31kvj-bzip2-1.0.8/include:/gnu/store/ggq21is2vyq1jkkqrs90brmwayc4rnmy-xz-5.2.4/include:/gnu/store/qlxznrl2zzivcln9zgyzw2zshqkjirfs-file-5.38/include:/gnu/store/j80hcnd9p1hh0yb5j1r0gn4vd329a78n-gawk-5.0.1/include:/gnu/store/j7fqszmnydxix8l35d7l3b7dj44qjrw4-make-4.3/include:/gnu/store/5371r5kyj50l6176lg6jbfzgfgb2xh14-binutils-2.34/include:/gnu/store/ap7hgyv4rjqmhg4a6cb6cypsh3g1f5q4-gcc-7.5.0/include:/gnu/store/cb88z63hyg1icd2kkahiink2p291mhr2-glibc-2.31/include:/gnu/store/zy38sp3pl92cw6cx82dvsg0mhlm2amyw-libgc-8.0.4/include:/gnu/store/kwz90ygvf7qr647gvpiiy3fr54wvv5nd-libltdl-2.4.6/include:/gnu/store/nzgd6xzgfkjfr65m5ds613ls0k8gg84v-libunistring-0.9.10/include:/gnu/store/nkpdg3jwllrsh7wbkzgflkcpyjn5wp0q-linux-libre-headers-5.4.20/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/qxq9kjrw1bzr7pqyihp62w5cnalqlani-cxxtest-4.4/include:/gnu/store/gd65f0jz8ja85r7marnjkpybf86zd57x-python-minimal-3.8.2/include:/gnu/store/f0qwvrd47nb9df39x6r9pr3p1lip00xj-atomspace-5.0.3-1.86c848d/include:/gnu/store/r9immc4b2gjm77d91wdc8mywji46aqnw-cogutil-2.0.3-1.b07b41b/include:/gnu/store/86f0qkg0ig058r2vh8hlxvy4k07f0rzy-gmp-6.2.0/include:/gnu/store/z62x4dzlkgbf08sma30vyyz91hgz6fjl-guile-2.2.7/include:/gnu/store/n8dfjyw11airbnfzz192p9bdbgf31kvj-bzip2-1.0.8/include:/gnu/store/ggq21is2vyq1jkkqrs90brmwayc4rnmy-xz-5.2.4/include:/gnu/store/qlxznrl2zzivcln9zgyzw2zshqkjirfs-file-5.38/include:/gnu/store/j80hcnd9p1hh0yb5j1r0gn4vd329a78n-gawk-5.0.1/include:/gnu/store/j7fqszmnydxix8l35d7l3b7dj44qjrw4-make-4.3/include:/gnu/store/5371r5kyj50l6176lg6jbfzgfgb2xh14-binutils-2.34/include:/gnu/store/ap7hgyv4rjqmhg4a6cb6cypsh3g1f5q4-gcc-7.5.0/include/c++:/gnu/store/ap7hgyv4rjqmhg4a6cb6cypsh3g1f5q4-gcc-7.5.0/include:/gnu/store/cb88z63hyg1icd2kkahiink2p291mhr2-glibc-2.31/include:/gnu/store/zy38sp3pl92cw6cx82dvsg0mhlm2amyw-libgc-8.0.4/include:/gnu/store/kwz90ygvf7qr647gvpiiy3fr54wvv5nd-libltdl-2.4.6/include:/gnu/store/nzgd6xzgfkjfr65m5ds613ls0k8gg84v-libunistring-0.9.10/include:/gnu/store/nkpdg3jwllrsh7wbkzgflkcpyjn5wp0q-linux-libre-headers-5.4.20/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/qxq9kjrw1bzr7pqyihp62w5cnalqlani-cxxtest-4.4/lib:/gnu/store/gd65f0jz8ja85r7marnjkpybf86zd57x-python-minimal-3.8.2/lib:/gnu/store/f0qwvrd47nb9df39x6r9pr3p1lip00xj-atomspace-5.0.3-1.86c848d/lib:/gnu/store/r9immc4b2gjm77d91wdc8mywji46aqnw-cogutil-2.0.3-1.b07b41b/lib:/gnu/store/86f0qkg0ig058r2vh8hlxvy4k07f0rzy-gmp-6.2.0/lib:/gnu/store/z62x4dzlkgbf08sma30vyyz91hgz6fjl-guile-2.2.7/lib:/gnu/store/n8dfjyw11airbnfzz192p9bdbgf31kvj-bzip2-1.0.8/lib:/gnu/store/ggq21is2vyq1jkkqrs90brmwayc4rnmy-xz-5.2.4/lib:/gnu/store/qlxznrl2zzivcln9zgyzw2zshqkjirfs-file-5.38/lib:/gnu/store/j80hcnd9p1hh0yb5j1r0gn4vd329a78n-gawk-5.0.1/lib:/gnu/store/5371r5kyj50l6176lg6jbfzgfgb2xh14-binutils-2.34/lib:/gnu/store/cb88z63hyg1icd2kkahiink2p291mhr2-glibc-2.31/lib:/gnu/store/z7hanmdmdalqh1v0y7z8ilinfhyfh91d-glibc-2.31-static/lib:/gnu/store/4xjcx6g4i229hzzqpqak6vw9bvqh88gi-glibc-utf8-locales-2.31/lib:/gnu/store/7jxfxdql4d1l42ylrzjvpa1a7yaya192-python-ply-3.11/lib:/gnu/store/zy38sp3pl92cw6cx82dvsg0mhlm2amyw-libgc-8.0.4/lib:/gnu/store/kwz90ygvf7qr647gvpiiy3fr54wvv5nd-libltdl-2.4.6/lib:/gnu/store/nzgd6xzgfkjfr65m5ds613ls0k8gg84v-libunistring-0.9.10/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/4xjcx6g4i229hzzqpqak6vw9bvqh88gi-glibc-utf8-locales-2.31/lib/locale'
phase `set-paths' succeeded after 0.1 seconds
starting phase `install-locale'
using 'en_US.utf8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/.gitignore' -> `./.gitignore'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/CMakeLists.txt' -> `./CMakeLists.txt'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/LICENSE' -> `./LICENSE'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/README.md' -> `./README.md'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/relationship-mining/obsolete/README.md' -> `./relationship-mining/obsolete/README.md'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/relationship-mining/obsolete/__init__.py' -> `./relationship-mining/obsolete/__init__.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/relationship-mining/obsolete/bio.py' -> `./relationship-mining/obsolete/bio.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/relationship-mining/obsolete/bio_scheme.scm' -> `./relationship-mining/obsolete/bio_scheme.scm'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/relationship-mining/obsolete/subgraph.py' -> `./relationship-mining/obsolete/subgraph.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/relationship-mining/obsolete/utilities.py' -> `./relationship-mining/obsolete/utilities.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/README.md' -> `./moses-scripts/README.md'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/common.sh' -> `./moses-scripts/common.sh'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/export_models_and_fitness.sh' -> `./moses-scripts/export_models_and_fitness.sh'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/relate_features_and_genes.sh' -> `./moses-scripts/relate_features_and_genes.sh'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/obsolete/README.md' -> `./moses-scripts/obsolete/README.md'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/obsolete/background_knowledge.scm' -> `./moses-scripts/obsolete/background_knowledge.scm'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/obsolete/models.scm' -> `./moses-scripts/obsolete/models.scm'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/obsolete/models_100l.scm' -> `./moses-scripts/obsolete/models_100l.scm'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/obsolete/models_10l.scm' -> `./moses-scripts/obsolete/models_10l.scm'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/obsolete/moses.sh' -> `./moses-scripts/obsolete/moses.sh'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/obsolete/process_Rdata.sh' -> `./moses-scripts/obsolete/process_Rdata.sh'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/obsolete/settings.sh' -> `./moses-scripts/obsolete/settings.sh'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/obsolete/test.sh' -> `./moses-scripts/obsolete/test.sh'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/MSigDB_to_scheme.py' -> `./knowledge-import/MSigDB_to_scheme.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/README.md' -> `./knowledge-import/README.md'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/RulesOfTranslation.txt' -> `./knowledge-import/RulesOfTranslation.txt'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SifToScheme.py' -> `./knowledge-import/SifToScheme.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/obsolete/Aging-Mythelation.py' -> `./knowledge-import/obsolete/Aging-Mythelation.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/obsolete/GO_Annotation_scm.py' -> `./knowledge-import/obsolete/GO_Annotation_scm.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/obsolete/GO_scm.py' -> `./knowledge-import/obsolete/GO_scm.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/obsolete/MSigDB_to_scheme.py' -> `./knowledge-import/obsolete/MSigDB_to_scheme.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/obsolete/README.md' -> `./knowledge-import/obsolete/README.md'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/obsolete/fix_obo.sh' -> `./knowledge-import/obsolete/fix_obo.sh'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/obsolete/lifeSpanObservation_2015.py' -> `./knowledge-import/obsolete/lifeSpanObservation_2015.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/obsolete/lifespan_observation_to_human_homologue.R' -> `./knowledge-import/obsolete/lifespan_observation_to_human_homologue.R'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/obsolete/load_atoms.py' -> `./knowledge-import/obsolete/load_atoms.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/GO_Annotation_scm.py' -> `./knowledge-import/SNET/GO_Annotation_scm.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/GO_scm.py' -> `./knowledge-import/SNET/GO_scm.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/Physical Entity (PE) Identifier mapping.py' -> `./knowledge-import/SNET/Physical Entity (PE) Identifier mapping.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/Readme.md' -> `./knowledge-import/SNET/Readme.md'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/SMPDB_pathway.py' -> `./knowledge-import/SNET/SMPDB_pathway.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/biogrid.py' -> `./knowledge-import/SNET/biogrid.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/gene2proteinMapping.py' -> `./knowledge-import/SNET/gene2proteinMapping.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/reactome_pathway.py' -> `./knowledge-import/SNET/reactome_pathway.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/uniprot2GO.py' -> `./knowledge-import/SNET/uniprot2GO.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/uniprotIDmap.R' -> `./knowledge-import/SNET/uniprotIDmap.R'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/current/atomese_translation.md' -> `./knowledge-import/SNET/current/atomese_translation.md'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/CMakeLists.txt' -> `./bioscience/CMakeLists.txt'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/Dockerfile' -> `./bioscience/Dockerfile'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/Dockerfile_Eddie' -> `./bioscience/Dockerfile_Eddie'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/README.md' -> `./bioscience/README.md'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/bioscience.scm' -> `./bioscience/bioscience.scm'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/fig.yml' -> `./bioscience/fig.yml'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/opencog.conf' -> `./bioscience/opencog.conf'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/types/BioScienceTypes.cc' -> `./bioscience/types/BioScienceTypes.cc'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/types/CMakeLists.txt' -> `./bioscience/types/CMakeLists.txt'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/types/atom_types.script' -> `./bioscience/types/atom_types.script'
phase `unpack' succeeded after 0.0 seconds
starting phase `fix-unqualified-load'
phase `fix-unqualified-load' succeeded after 0.0 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
patch-shebang: ./knowledge-import/MSigDB_to_scheme.py: warning: no binary for interpreter `python2.7' found in $PATH
patch-shebang: ./knowledge-import/SNET/GO_Annotation_scm.py: warning: no binary for interpreter `python2.7' found in $PATH
patch-shebang: ./knowledge-import/SNET/GO_scm.py: warning: no binary for interpreter `python2.7' found in $PATH
patch-shebang: ./knowledge-import/obsolete/Aging-Mythelation.py: warning: no binary for interpreter `python2.7' found in $PATH
patch-shebang: ./knowledge-import/obsolete/GO_Annotation_scm.py: warning: no binary for interpreter `python2.7' found in $PATH
patch-shebang: ./knowledge-import/obsolete/GO_scm.py: warning: no binary for interpreter `python2.7' found in $PATH
patch-shebang: ./knowledge-import/obsolete/MSigDB_to_scheme.py: warning: no binary for interpreter `python2.7' found in $PATH
patch-shebang: ./knowledge-import/obsolete/fix_obo.sh: changing `/bin/bash' to `/gnu/store/7sfbiqh21h90bc6zi8br1xh60m6qgdd5-bash-minimal-5.0.16/bin/bash'
patch-shebang: ./knowledge-import/obsolete/lifeSpanObservation_2015.py: warning: no binary for interpreter `python2.7' found in $PATH
patch-shebang: ./knowledge-import/obsolete/load_atoms.py: warning: no binary for interpreter `python2.7' found in $PATH
patch-shebang: ./moses-scripts/export_models_and_fitness.sh: changing `/bin/bash' to `/gnu/store/7sfbiqh21h90bc6zi8br1xh60m6qgdd5-bash-minimal-5.0.16/bin/bash'
patch-shebang: ./moses-scripts/obsolete/process_Rdata.sh: changing `/bin/bash' to `/gnu/store/7sfbiqh21h90bc6zi8br1xh60m6qgdd5-bash-minimal-5.0.16/bin/bash'
patch-shebang: ./moses-scripts/obsolete/test.sh: changing `/bin/bash' to `/gnu/store/7sfbiqh21h90bc6zi8br1xh60m6qgdd5-bash-minimal-5.0.16/bin/bash'
patch-shebang: ./moses-scripts/relate_features_and_genes.sh: changing `/bin/bash' to `/gnu/store/7sfbiqh21h90bc6zi8br1xh60m6qgdd5-bash-minimal-5.0.16/bin/bash'
phase `patch-source-shebangs' succeeded after 0.0 seconds
starting phase `configure'
source directory: "/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source" (relative from build: "../source")
build directory: "/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build"
running 'cmake' with arguments ("../source" "-DCMAKE_BUILD_TYPE=RelWithDebInfo" "-DCMAKE_INSTALL_PREFIX=/gnu/store/hvjmkbp5lz8s5m2kyjrvf7xa6as4pmxb-agi-bio-0-1.b5c6f3d" "-DCMAKE_INSTALL_LIBDIR=lib" "-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE" "-DCMAKE_INSTALL_RPATH=/gnu/store/hvjmkbp5lz8s5m2kyjrvf7xa6as4pmxb-agi-bio-0-1.b5c6f3d/lib" "-DCMAKE_VERBOSE_MAKEFILE=ON" "-DGUILE_INCLUDE_DIR=/gnu/store/z62x4dzlkgbf08sma30vyyz91hgz6fjl-guile-2.2.7/include/guile/2.2/" "-DGUILE_SITE_DIR=/gnu/store/hvjmkbp5lz8s5m2kyjrvf7xa6as4pmxb-agi-bio-0-1.b5c6f3d/share/guile/site/2.2/")
-- The C compiler identification is GNU 7.5.0
-- The CXX compiler identification is GNU 7.5.0
-- Check for working C compiler: /gnu/store/ap7hgyv4rjqmhg4a6cb6cypsh3g1f5q4-gcc-7.5.0/bin/gcc
-- Check for working C compiler: /gnu/store/ap7hgyv4rjqmhg4a6cb6cypsh3g1f5q4-gcc-7.5.0/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /gnu/store/ap7hgyv4rjqmhg4a6cb6cypsh3g1f5q4-gcc-7.5.0/bin/c++
-- Check for working CXX compiler: /gnu/store/ap7hgyv4rjqmhg4a6cb6cypsh3g1f5q4-gcc-7.5.0/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Build type: RelWithDebInfo
-- CogUtil version 2.0.3 found.
-- AtomSpace found.
-- Guile (2.2.7 >= 2.2.2) was found.
-- Found Python3Interp: /gnu/store/gd65f0jz8ja85r7marnjkpybf86zd57x-python-minimal-3.8.2/bin/python3  
-- Python 3.8.2 interpreter found.

Building for Linux 5.4.35-gnu

The following components will be built:
-----------------------------------------------
   Bioscience  - Bioscience atom types.

-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_INSTALL_LIBDIR


-- Build files have been written to: /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build
phase `configure' succeeded after 1.8 seconds
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phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `build'
/gnu/store/11pcv2ccirb9lr6ri1gkdfw89imhxv5w-cmake-minimal-3.16.5/bin/cmake -S/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source -B/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build --check-build-system CMakeFiles/Makefile.cmake 0
/gnu/store/11pcv2ccirb9lr6ri1gkdfw89imhxv5w-cmake-minimal-3.16.5/bin/cmake -E cmake_progress_start /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/CMakeFiles /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make -f bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/build.make bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/depend
make -f bioscience/CMakeFiles/SCM_CONFIG.dir/build.make bioscience/CMakeFiles/SCM_CONFIG.dir/depend
make -f bioscience/types/CMakeFiles/bioscience_atom_types.dir/build.make bioscience/types/CMakeFiles/bioscience_atom_types.dir/depend
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build && /gnu/store/11pcv2ccirb9lr6ri1gkdfw89imhxv5w-cmake-minimal-3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/DependInfo.cmake --color=
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build && /gnu/store/11pcv2ccirb9lr6ri1gkdfw89imhxv5w-cmake-minimal-3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/CMakeFiles/SCM_CONFIG.dir/DependInfo.cmake --color=
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build && /gnu/store/11pcv2ccirb9lr6ri1gkdfw89imhxv5w-cmake-minimal-3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience/types /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types/CMakeFiles/bioscience_atom_types.dir/DependInfo.cmake --color=
Scanning dependencies of target SCM_CONFIG
Scanning dependencies of target bioscience_atom_types
Scanning dependencies of target COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make -f bioscience/CMakeFiles/SCM_CONFIG.dir/build.make bioscience/CMakeFiles/SCM_CONFIG.dir/build
make -f bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/build.make bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/build
make -f bioscience/types/CMakeFiles/bioscience_atom_types.dir/build.make bioscience/types/CMakeFiles/bioscience_atom_types.dir/build
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make[2]: Nothing to be done for 'bioscience/CMakeFiles/SCM_CONFIG.dir/build'.
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience && /gnu/store/11pcv2ccirb9lr6ri1gkdfw89imhxv5w-cmake-minimal-3.16.5/bin/cmake -E copy /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience///bioscience.scm /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/opencog/scm//opencog/bioscience.scm
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
[ 33%] Built target SCM_CONFIG
[ 33%] Generating opencog types
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types && /gnu/store/11pcv2ccirb9lr6ri1gkdfw89imhxv5w-cmake-minimal-3.16.5/bin/cmake -DSCRIPT_FILE="/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience/types/atom_types.script" -DHEADER_FILE="/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types/atom_types.h" -DDEFINITIONS_FILE="/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types/atom_types.definitions" -DINHERITANCE_FILE="/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types/atom_types.inheritance" -DSCM_FILE="/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types/bioscience_types.scm" -DPYTHON_FILE="/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types/bioscience_types.pyx" -P /gnu/store/f0qwvrd47nb9df39x6r9pr3p1lip00xj-atomspace-5.0.3-1.86c848d/share/opencog/cmake/OpenCogAtomTypes.cmake
[ 33%] Built target COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience
-- Atom type name: GeneNode Gene
-- Atom type name: MoleculeNode Molecule
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
[ 33%] Built target bioscience_atom_types
make -f bioscience/types/CMakeFiles/bioscience-types.dir/build.make bioscience/types/CMakeFiles/bioscience-types.dir/depend
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build && /gnu/store/11pcv2ccirb9lr6ri1gkdfw89imhxv5w-cmake-minimal-3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience/types /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types/CMakeFiles/bioscience-types.dir/DependInfo.cmake --color=
Scanning dependencies of target bioscience-types
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make -f bioscience/types/CMakeFiles/bioscience-types.dir/build.make bioscience/types/CMakeFiles/bioscience-types.dir/build
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
[ 66%] Building CXX object bioscience/types/CMakeFiles/bioscience-types.dir/BioScienceTypes.cc.o
cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types && /gnu/store/ap7hgyv4rjqmhg4a6cb6cypsh3g1f5q4-gcc-7.5.0/bin/c++  -DGUILE_SITE_DIR=\"/gnu/store/hvjmkbp5lz8s5m2kyjrvf7xa6as4pmxb-agi-bio-0-1.b5c6f3d/share/guile/site/2.2/\" -DHAVE_ATOMSPACE -DHAVE_COGUTIL -DHAVE_GUILE -DHAVE_GUILE2 -DHAVE_GUILE_2_2 -DPROJECT_BINARY_DIR=\"/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build\" -DPROJECT_SOURCE_DIR=\"/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source\" -Dbioscience_types_EXPORTS -I/gnu/store/z62x4dzlkgbf08sma30vyyz91hgz6fjl-guile-2.2.7/include/guile/2.2 -I/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source -I/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build  -Wall -fPIC -fstack-protector -Wno-variadic-macros -fopenmp -std=gnu++14 -O2 -g -DNDEBUG -fPIC   -o CMakeFiles/bioscience-types.dir/BioScienceTypes.cc.o -c /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience/types/BioScienceTypes.cc
[100%] Linking CXX shared library libbioscience-types.so
cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types && /gnu/store/11pcv2ccirb9lr6ri1gkdfw89imhxv5w-cmake-minimal-3.16.5/bin/cmake -E cmake_link_script CMakeFiles/bioscience-types.dir/link.txt --verbose=1
/gnu/store/ap7hgyv4rjqmhg4a6cb6cypsh3g1f5q4-gcc-7.5.0/bin/c++ -fPIC -Wall -fPIC -fstack-protector -Wno-variadic-macros -fopenmp -std=gnu++14 -O2 -g -DNDEBUG  -shared -Wl,-soname,libbioscience-types.so -o libbioscience-types.so CMakeFiles/bioscience-types.dir/BioScienceTypes.cc.o  -Wl,-rpath,/gnu/store/f0qwvrd47nb9df39x6r9pr3p1lip00xj-atomspace-5.0.3-1.86c848d/lib/opencog:/gnu/store/r9immc4b2gjm77d91wdc8mywji46aqnw-cogutil-2.0.3-1.b07b41b/lib/opencog:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: -lpthread /gnu/store/f0qwvrd47nb9df39x6r9pr3p1lip00xj-atomspace-5.0.3-1.86c848d/lib/opencog/libatom_types.so -lpthread /gnu/store/r9immc4b2gjm77d91wdc8mywji46aqnw-cogutil-2.0.3-1.b07b41b/lib/opencog/libcogutil.so 
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
[100%] Built target bioscience-types
make[1]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
/gnu/store/11pcv2ccirb9lr6ri1gkdfw89imhxv5w-cmake-minimal-3.16.5/bin/cmake -E cmake_progress_start /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/CMakeFiles 0
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starting phase `install'
/gnu/store/11pcv2ccirb9lr6ri1gkdfw89imhxv5w-cmake-minimal-3.16.5/bin/cmake -S/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source -B/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build --check-build-system CMakeFiles/Makefile.cmake 0
/gnu/store/11pcv2ccirb9lr6ri1gkdfw89imhxv5w-cmake-minimal-3.16.5/bin/cmake -E cmake_progress_start /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/CMakeFiles /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make -f bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/build.make bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/depend
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build && /gnu/store/11pcv2ccirb9lr6ri1gkdfw89imhxv5w-cmake-minimal-3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make -f bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/build.make bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/build
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience && /gnu/store/11pcv2ccirb9lr6ri1gkdfw89imhxv5w-cmake-minimal-3.16.5/bin/cmake -E copy /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience///bioscience.scm /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/opencog/scm//opencog/bioscience.scm
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
[  0%] Built target COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience
make -f bioscience/CMakeFiles/SCM_CONFIG.dir/build.make bioscience/CMakeFiles/SCM_CONFIG.dir/depend
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build && /gnu/store/11pcv2ccirb9lr6ri1gkdfw89imhxv5w-cmake-minimal-3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/CMakeFiles/SCM_CONFIG.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make -f bioscience/CMakeFiles/SCM_CONFIG.dir/build.make bioscience/CMakeFiles/SCM_CONFIG.dir/build
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make[2]: Nothing to be done for 'bioscience/CMakeFiles/SCM_CONFIG.dir/build'.
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
[  0%] Built target SCM_CONFIG
make -f bioscience/types/CMakeFiles/bioscience_atom_types.dir/build.make bioscience/types/CMakeFiles/bioscience_atom_types.dir/depend
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build && /gnu/store/11pcv2ccirb9lr6ri1gkdfw89imhxv5w-cmake-minimal-3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience/types /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types/CMakeFiles/bioscience_atom_types.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make -f bioscience/types/CMakeFiles/bioscience_atom_types.dir/build.make bioscience/types/CMakeFiles/bioscience_atom_types.dir/build
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make[2]: Nothing to be done for 'bioscience/types/CMakeFiles/bioscience_atom_types.dir/build'.
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
[ 33%] Built target bioscience_atom_types
make -f bioscience/types/CMakeFiles/bioscience-types.dir/build.make bioscience/types/CMakeFiles/bioscience-types.dir/depend
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build && /gnu/store/11pcv2ccirb9lr6ri1gkdfw89imhxv5w-cmake-minimal-3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience/types /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types/CMakeFiles/bioscience-types.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make -f bioscience/types/CMakeFiles/bioscience-types.dir/build.make bioscience/types/CMakeFiles/bioscience-types.dir/build
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make[2]: Nothing to be done for 'bioscience/types/CMakeFiles/bioscience-types.dir/build'.
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
[100%] Built target bioscience-types
make[1]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
/gnu/store/11pcv2ccirb9lr6ri1gkdfw89imhxv5w-cmake-minimal-3.16.5/bin/cmake -E cmake_progress_start /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[1]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make[1]: Nothing to be done for 'preinstall'.
make[1]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
Install the project...
/gnu/store/11pcv2ccirb9lr6ri1gkdfw89imhxv5w-cmake-minimal-3.16.5/bin/cmake -P cmake_install.cmake
-- Install configuration: "RelWithDebInfo"
-- Installing: /gnu/store/hvjmkbp5lz8s5m2kyjrvf7xa6as4pmxb-agi-bio-0-1.b5c6f3d/share/guile/site/2.2/opencog/bio-config.scm
-- Installing: /gnu/store/hvjmkbp5lz8s5m2kyjrvf7xa6as4pmxb-agi-bio-0-1.b5c6f3d/share/guile/site/2.2//opencog/bioscience.scm
-- Installing: /gnu/store/hvjmkbp5lz8s5m2kyjrvf7xa6as4pmxb-agi-bio-0-1.b5c6f3d/lib/opencog/libbioscience-types.so
-- Set runtime path of "/gnu/store/hvjmkbp5lz8s5m2kyjrvf7xa6as4pmxb-agi-bio-0-1.b5c6f3d/lib/opencog/libbioscience-types.so" to "/gnu/store/hvjmkbp5lz8s5m2kyjrvf7xa6as4pmxb-agi-bio-0-1.b5c6f3d/lib/opencog:/gnu/store/f0qwvrd47nb9df39x6r9pr3p1lip00xj-atomspace-5.0.3-1.86c848d/lib/opencog:/gnu/store/r9immc4b2gjm77d91wdc8mywji46aqnw-cogutil-2.0.3-1.b07b41b/lib/opencog"
-- Installing: /gnu/store/hvjmkbp5lz8s5m2kyjrvf7xa6as4pmxb-agi-bio-0-1.b5c6f3d/include/opencog/bioscience/types/atom_types.h
-- Installing: /gnu/store/hvjmkbp5lz8s5m2kyjrvf7xa6as4pmxb-agi-bio-0-1.b5c6f3d/share/guile/site/2.2/opencog/bioscience/types/bioscience_types.scm
phase `install' succeeded after 0.3 seconds
starting phase `patch-shebangs'
phase `patch-shebangs' succeeded after 0.0 seconds
starting phase `strip'
stripping binaries in "/gnu/store/hvjmkbp5lz8s5m2kyjrvf7xa6as4pmxb-agi-bio-0-1.b5c6f3d/lib" with "strip" and flags ("--strip-debug")
phase `strip' succeeded after 0.0 seconds
starting phase `validate-runpath'
validating RUNPATH of 1 binaries in "/gnu/store/hvjmkbp5lz8s5m2kyjrvf7xa6as4pmxb-agi-bio-0-1.b5c6f3d/lib"...
phase `validate-runpath' succeeded after 0.0 seconds
starting phase `validate-documentation-location'
phase `validate-documentation-location' succeeded after 0.0 seconds
starting phase `delete-info-dir-file'
phase `delete-info-dir-file' succeeded after 0.0 seconds
starting phase `patch-dot-desktop-files'
phase `patch-dot-desktop-files' succeeded after 0.0 seconds
starting phase `install-license-files'
installing 1 license files from '../source'
phase `install-license-files' succeeded after 0.0 seconds
starting phase `reset-gzip-timestamps'
phase `reset-gzip-timestamps' succeeded after 0.0 seconds
starting phase `compress-documentation'
phase `compress-documentation' succeeded after 0.0 seconds