starting phase `separate-from-pid1' build process now running as PID 18 phase `separate-from-pid1' succeeded after 0.0 seconds starting phase `set-SOURCE-DATE-EPOCH' phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds starting phase `set-paths' environment variable `PATH' set to `/gnu/store/8hssib0pb6m6vc7h1c92qzm7q9bw9s43-r-minimal-4.4.2/bin:/gnu/store/xf9q2qibn5vb6cy6jb3ifkrh4wql7vxy-tar-1.34/bin:/gnu/store/5g3pia8fi48qvaqhb0xqw1j5yrxfkpbm-gzip-1.13/bin:/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/bin:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/bin:/gnu/store/l1vf4qc0b70pzxqgz72sm4rj7b5fa1w0-diffutils-3.10/bin:/gnu/store/ihhhssc16ii48rds45i7v356l7p721ri-patch-2.7.6/bin:/gnu/store/w7isjvmf0qcs290vjwb7p3rjyfx0dn4s-findutils-4.9.0/bin:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/bin:/gnu/store/y8khv5c0z35xd5wh3lga1npkrg4n53wm-zstd-1.5.2/bin:/gnu/store/8mapjfzb13assv6nd4kph3csvqydk6ym-sed-4.8/bin:/gnu/store/ysla2nchzpzpr9gwhwv2ihm26hriiqxg-grep-3.11/bin:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/bin:/gnu/store/62c9pawfdpv1qrgavs8amadbwz8zfiaf-coreutils-9.1/bin:/gnu/store/lx366j1ydprzjyx6gyhjg3095m0swwqg-make-4.4.1/bin:/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin:/gnu/store/cfzwm4yq78c39iqxlr146jr2lk1rl09c-ld-wrapper-0/bin:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/bin:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/bin:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/bin:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/sbin' environment variable `R_LIBS_SITE' unset environment variable `BASH_LOADABLES_PATH' unset environment variable `C_INCLUDE_PATH' set to `/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/include:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/include:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/include:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/include:/gnu/store/lx366j1ydprzjyx6gyhjg3095m0swwqg-make-4.4.1/include:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/include:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/include:/gnu/store/9xcpby78v4ydigv3s1rxc8ndyl2ni95m-linux-libre-headers-5.15.49/include' environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/include:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/include:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/include:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/include:/gnu/store/lx366j1ydprzjyx6gyhjg3095m0swwqg-make-4.4.1/include:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/include:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include/c++:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/include:/gnu/store/9xcpby78v4ydigv3s1rxc8ndyl2ni95m-linux-libre-headers-5.15.49/include' environment variable `OBJC_INCLUDE_PATH' set to `/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/include:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/include:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/include:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/include:/gnu/store/lx366j1ydprzjyx6gyhjg3095m0swwqg-make-4.4.1/include:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/include:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/include:/gnu/store/9xcpby78v4ydigv3s1rxc8ndyl2ni95m-linux-libre-headers-5.15.49/include' environment variable `OBJCPLUS_INCLUDE_PATH' set to `/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/include:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/include:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/include:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/include:/gnu/store/lx366j1ydprzjyx6gyhjg3095m0swwqg-make-4.4.1/include:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/include:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include/c++:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/include:/gnu/store/9xcpby78v4ydigv3s1rxc8ndyl2ni95m-linux-libre-headers-5.15.49/include' environment variable `LIBRARY_PATH' set to `/gnu/store/8hssib0pb6m6vc7h1c92qzm7q9bw9s43-r-minimal-4.4.2/lib:/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/lib:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/lib:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/lib:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/lib:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/lib:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/lib:/gnu/store/s21dvcsxf4ynf9jsip352z568knxb5hp-glibc-2.39-static/lib' environment variable `GUIX_LOCPATH' set to `/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/lib/locale' environment variable `TZDIR' unset phase `set-paths' succeeded after 0.0 seconds starting phase `install-locale' using 'C.UTF-8' locale for category "LC_ALL" phase `install-locale' succeeded after 0.0 seconds starting phase `unpack' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/DESCRIPTION' -> `./DESCRIPTION' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/.gitignore' -> `./.gitignore' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/.Rbuildignore' -> `./.Rbuildignore' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/NAMESPACE' -> `./NAMESPACE' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/compGenomRData.Rproj' -> `./compGenomRData.Rproj' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/README.md' -> `./README.md' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/rn4.refseq2name.txt' -> `./inst/extdata/rn4.refseq2name.txt' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/refseq.hg19.bed' -> `./inst/extdata/refseq.hg19.bed' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/leukemiaExpressionSubset.rds' -> `./inst/extdata/leukemiaExpressionSubset.rds' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/subset.enhancers.hg18.bed' -> `./inst/extdata/subset.enhancers.hg18.bed' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/refseq.hg19.chr21.bed' -> `./inst/extdata/refseq.hg19.chr21.bed' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/patient2LGGsubtypes.rds' -> `./inst/extdata/patient2LGGsubtypes.rds' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/CpGi.hg19.table.txt' -> `./inst/extdata/CpGi.hg19.table.txt' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/subset.refseq.hg18.bed' -> `./inst/extdata/subset.refseq.hg18.bed' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/H1.ESC.H3K4me3.chr20.bw' -> `./inst/extdata/H1.ESC.H3K4me3.chr20.bw' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/LGGrnaseq.rds' -> `./inst/extdata/LGGrnaseq.rds' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/H1.chr21.chr22.rds' -> `./inst/extdata/H1.chr21.chr22.rds' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/wgEncodeHaibTfbsGm12878Sp1Pcr1xAlnRep1.chr21.bam.bai' -> `./inst/extdata/wgEncodeHaibTfbsGm12878Sp1Pcr1xAlnRep1.chr21.bam.bai' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/wgEncodeHaibTfbsGm12878Sp1Pcr1xAlnRep1.chr21.bam' -> `./inst/extdata/wgEncodeHaibTfbsGm12878Sp1Pcr1xAlnRep1.chr21.bam' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/subset.cpgi.hg18.bed' -> `./inst/extdata/subset.cpgi.hg18.bed' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/CpGmeth2Age.rds' -> `./inst/extdata/CpGmeth2Age.rds' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/wgEncodeHaibTfbsA549.chr21.bw' -> `./inst/extdata/wgEncodeHaibTfbsA549.chr21.bw' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/cpgi.hg19.chr21.bed' -> `./inst/extdata/cpgi.hg19.chr21.bed' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/CpGi.table.hg18.txt' -> `./inst/extdata/CpGi.table.hg18.txt' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/H1.ESC.dnase.chr20.bw' -> `./inst/extdata/H1.ESC.dnase.chr20.bw' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/H1.ESC.H3K27ac.chr20.bw' -> `./inst/extdata/H1.ESC.H3K27ac.chr20.bw' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/HistoneModeVSgeneExp.rds' -> `./inst/extdata/HistoneModeVSgeneExp.rds' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/refseq.hg19.chr20.bed' -> `./inst/extdata/refseq.hg19.chr20.bed' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/wgEncodeHaibTfbsGm12878Sp1Pcr1xPkRep1.broadPeak.gz' -> `./inst/extdata/wgEncodeHaibTfbsGm12878Sp1Pcr1xPkRep1.broadPeak.gz' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/wgEncodeHaibTfbsGm12878Sp1Pcr1xPkRep2.broadPeak.gz' -> `./inst/extdata/wgEncodeHaibTfbsGm12878Sp1Pcr1xPkRep2.broadPeak.gz' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/rn4.refseq.bed' -> `./inst/extdata/rn4.refseq.bed' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/geneExpMat.rds' -> `./inst/extdata/geneExpMat.rds' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_ZNF143_r2.chr21.bam' -> `./inst/extdata/chip-seq/GM12878_hg38_ZNF143_r2.chr21.bam' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_Input_r4.chr21.bam.bai' -> `./inst/extdata/chip-seq/GM12878_hg38_Input_r4.chr21.bam.bai' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_H3K4me3.chr21.bam' -> `./inst/extdata/chip-seq/GM12878_hg38_H3K4me3.chr21.bam' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_SMC3_r1.chr21.bam' -> `./inst/extdata/chip-seq/GM12878_hg38_SMC3_r1.chr21.bam' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_H3K36me3.chr21.bam.bai' -> `./inst/extdata/chip-seq/GM12878_hg38_H3K36me3.chr21.bam.bai' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_H3K27me3.chr21.bam.bai' -> `./inst/extdata/chip-seq/GM12878_hg38_H3K27me3.chr21.bam.bai' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_SMC3_r2.chr21.bam.bai' -> `./inst/extdata/chip-seq/GM12878_hg38_SMC3_r2.chr21.bam.bai' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_CTCF_r1.chr21.bam.bai' -> `./inst/extdata/chip-seq/GM12878_hg38_CTCF_r1.chr21.bam.bai' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_SMC3_r2.chr21.bam' -> `./inst/extdata/chip-seq/GM12878_hg38_SMC3_r2.chr21.bam' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_Input_r5.chr21.bam.bai' -> `./inst/extdata/chip-seq/GM12878_hg38_Input_r5.chr21.bam.bai' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_CTCF_r2.chr21.bam' -> `./inst/extdata/chip-seq/GM12878_hg38_CTCF_r2.chr21.bam' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_H3K27me3.chr21.bw' -> `./inst/extdata/chip-seq/GM12878_hg38_H3K27me3.chr21.bw' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_H3K4me1.chr21.bam' -> `./inst/extdata/chip-seq/GM12878_hg38_H3K4me1.chr21.bam' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_Input_r4.chr21.bam' -> `./inst/extdata/chip-seq/GM12878_hg38_Input_r4.chr21.bam' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_Input_r3.chr21.bam' -> `./inst/extdata/chip-seq/GM12878_hg38_Input_r3.chr21.bam' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_Input_r3.chr21.bam.bai' -> `./inst/extdata/chip-seq/GM12878_hg38_Input_r3.chr21.bam.bai' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_Input_r2.chr21.bam.bai' -> `./inst/extdata/chip-seq/GM12878_hg38_Input_r2.chr21.bam.bai' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_H3K4me1.chr21.bam.bai' -> `./inst/extdata/chip-seq/GM12878_hg38_H3K4me1.chr21.bam.bai' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_H3K4me1.chr21.bw' -> `./inst/extdata/chip-seq/GM12878_hg38_H3K4me1.chr21.bw' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_ZNF143_r1.chr21.bam' -> `./inst/extdata/chip-seq/GM12878_hg38_ZNF143_r1.chr21.bam' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_Input_r1.chr21.bam' -> `./inst/extdata/chip-seq/GM12878_hg38_Input_r1.chr21.bam' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_H3K36me3.chr21.bw' -> `./inst/extdata/chip-seq/GM12878_hg38_H3K36me3.chr21.bw' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_ZNF143_r2.chr21.bam.bai' -> `./inst/extdata/chip-seq/GM12878_hg38_ZNF143_r2.chr21.bam.bai' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_ZNF143_r1.chr21.bam.bai' -> `./inst/extdata/chip-seq/GM12878_hg38_ZNF143_r1.chr21.bam.bai' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_Input_r1.chr21.bam.bai' -> `./inst/extdata/chip-seq/GM12878_hg38_Input_r1.chr21.bam.bai' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_SMC3_r1.chr21.bam.bai' -> `./inst/extdata/chip-seq/GM12878_hg38_SMC3_r1.chr21.bam.bai' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_H3K36me3.chr21.bam' -> `./inst/extdata/chip-seq/GM12878_hg38_H3K36me3.chr21.bam' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_H3K4me3.chr21.bw' -> `./inst/extdata/chip-seq/GM12878_hg38_H3K4me3.chr21.bw' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/CTCF_peaks.txt' -> `./inst/extdata/chip-seq/CTCF_peaks.txt' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_H3K27me3.chr21.bam' -> `./inst/extdata/chip-seq/GM12878_hg38_H3K27me3.chr21.bam' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_Input_r5.chr21.bam' -> `./inst/extdata/chip-seq/GM12878_hg38_Input_r5.chr21.bam' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_POLR2A.chr21.bw' -> `./inst/extdata/chip-seq/GM12878_hg38_POLR2A.chr21.bw' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_CTCF_r2.chr21.bam.bai' -> `./inst/extdata/chip-seq/GM12878_hg38_CTCF_r2.chr21.bam.bai' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_CTCF_r1.chr21.bam' -> `./inst/extdata/chip-seq/GM12878_hg38_CTCF_r1.chr21.bam' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_Input_r2.chr21.bam' -> `./inst/extdata/chip-seq/GM12878_hg38_Input_r2.chr21.bam' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/chip-seq/GM12878_hg38_H3K4me3.chr21.bam.bai' -> `./inst/extdata/chip-seq/GM12878_hg38_H3K4me3.chr21.bam.bai' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/multi-omics/COREAD_CMS13_cnv.csv' -> `./inst/extdata/multi-omics/COREAD_CMS13_cnv.csv' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/multi-omics/COREAD_CMS13_gex.csv' -> `./inst/extdata/multi-omics/COREAD_CMS13_gex.csv' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/multi-omics/COREAD_CMS13_subtypes.csv' -> `./inst/extdata/multi-omics/COREAD_CMS13_subtypes.csv' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/multi-omics/COREAD_CMS13_muts.csv' -> `./inst/extdata/multi-omics/COREAD_CMS13_muts.csv' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/rna-seq/SRP021193.raw_counts.tsv' -> `./inst/extdata/rna-seq/SRP021193.raw_counts.tsv' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/rna-seq/SRP049988.raw_counts.tsv' -> `./inst/extdata/rna-seq/SRP049988.raw_counts.tsv' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/rna-seq/SRP021193.colData.tsv' -> `./inst/extdata/rna-seq/SRP021193.colData.tsv' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/rna-seq/SRP029880.colData.tsv' -> `./inst/extdata/rna-seq/SRP029880.colData.tsv' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/rna-seq/SRP049988.colData.tsv' -> `./inst/extdata/rna-seq/SRP049988.colData.tsv' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/rna-seq/SRP029880.raw_counts.tsv' -> `./inst/extdata/rna-seq/SRP029880.raw_counts.tsv' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/extdata/rna-seq/HK_genes.txt' -> `./inst/extdata/rna-seq/HK_genes.txt' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/scripts/getData_statistics.R' -> `./inst/scripts/getData_statistics.R' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/inst/scripts/getData_genomicIntervals.R' -> `./inst/scripts/getData_genomicIntervals.R' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/R/hello.R' -> `./R/hello.R' `/gnu/store/zs3v8lfp4xgsy2gm9jl8yb5fzsh3mzsd-r-compgenomrdata-0.1.0-1.24484cb-checkout/man/hello.Rd' -> `./man/hello.Rd' phase `unpack' succeeded after 1.1 seconds starting phase `patch-usr-bin-file' phase `patch-usr-bin-file' succeeded after 0.0 seconds starting phase `patch-source-shebangs' phase `patch-source-shebangs' succeeded after 0.0 seconds starting phase `patch-generated-file-shebangs' phase `patch-generated-file-shebangs' succeeded after 0.0 seconds starting phase `install' * installing *source* package ‘compGenomRData’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (compGenomRData) phase `install' succeeded after 3.5 seconds starting phase `check' phase `check' succeeded after 0.0 seconds starting phase `patch-shebangs' phase `patch-shebangs' succeeded after 0.0 seconds starting phase `strip' phase `strip' succeeded 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