starting phase `set-SOURCE-DATE-EPOCH' phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds starting phase `set-paths' environment variable `PATH' set to `/gnu/store/v9d5kgjpkcgfwc5k1jsq8a6i2qxmp9fw-cmake-minimal-3.24.2/bin:/gnu/store/yd0z1wnpm174v8kk0hjs89wcari5di9b-cxxtest-4.4/bin:/gnu/store/vaznv17j32jky10bi6942fdfxh7awl67-python-minimal-3.10.7/bin:/gnu/store/w25iigidgynrld3jlpxbks8xwgrw9ipa-pkg-config-0.29.2/bin:/gnu/store/wcz40pkasly1dq2iqqbhmh15yzjs2lfs-guile-2.2.7/bin:/gnu/store/bkcd6iqgxhikvbl54vwiy2jih981vrz1-tar-1.34/bin:/gnu/store/4ly70ncfklcln1vvilpq5fih53227p4b-gzip-1.12/bin:/gnu/store/d66iz5kkh2kravdfa21x58bd53s7acvp-bzip2-1.0.8/bin:/gnu/store/bzj02l1bgp7ibhxvdmpga2k5af0c4npa-file-5.44/bin:/gnu/store/mydmggf3qs7ha5ajkz7x250dy7cnmi2v-diffutils-3.8/bin:/gnu/store/jzk30pqyk3z7xlizbq6013krgyyyys39-patch-2.7.6/bin:/gnu/store/5sksczis0ssy8nhln62lsjfm80np01rc-findutils-4.9.0/bin:/gnu/store/qll484d4kizx5s1lgyjgrq2nqzq177q6-gawk-5.2.1/bin:/gnu/store/bjjyfa71m9zy8iyriqc9wbpg95skad90-sed-4.8/bin:/gnu/store/j0h6z30j13wrbch7pax9l9859c0wfvsl-grep-3.8/bin:/gnu/store/drsra005pzksg8z11jp4yn96sk8gkmq9-xz-5.2.8/bin:/gnu/store/sinrqfmja2a3ys1kmlwgpb629l4sh5rr-coreutils-9.1/bin:/gnu/store/kgdnsfsw8f226s6j5vldaqvc767hn8ff-make-4.3/bin:/gnu/store/9q7cmydxbzfpc79ybn1yn257wq547kvz-bash-minimal-5.1.16/bin:/gnu/store/py7qrzdb70jzkyjhggp15w57iqldv8hc-ld-wrapper-0/bin:/gnu/store/a7v86dd2kbi1rn9rwcw5mfw85aw9m3cf-binutils-2.38/bin:/gnu/store/dcrdgy1rjkh0kibpkw6v2mia7f921b27-gcc-11.3.0/bin:/gnu/store/3imvi8mfcsib1aiiidgr2znypih8nhmv-glibc-2.35/bin:/gnu/store/3imvi8mfcsib1aiiidgr2znypih8nhmv-glibc-2.35/sbin' environment variable `CMAKE_PREFIX_PATH' set to `/gnu/store/v9d5kgjpkcgfwc5k1jsq8a6i2qxmp9fw-cmake-minimal-3.24.2/:/gnu/store/yd0z1wnpm174v8kk0hjs89wcari5di9b-cxxtest-4.4/:/gnu/store/vaznv17j32jky10bi6942fdfxh7awl67-python-minimal-3.10.7/:/gnu/store/w25iigidgynrld3jlpxbks8xwgrw9ipa-pkg-config-0.29.2/:/gnu/store/pwilnp85vp0d8kw81zp42c85ymb6ikym-atomspace-5.0.3-1.86c848d/:/gnu/store/xvb96r08jpbxm76w37jmhjiqjsl5vc8m-cogutil-2.0.3-1.b07b41b/:/gnu/store/3ywdwbygx749dcz3hkqb34hm569k612b-gmp-6.2.1/:/gnu/store/wcz40pkasly1dq2iqqbhmh15yzjs2lfs-guile-2.2.7/:/gnu/store/bkcd6iqgxhikvbl54vwiy2jih981vrz1-tar-1.34/:/gnu/store/4ly70ncfklcln1vvilpq5fih53227p4b-gzip-1.12/:/gnu/store/d66iz5kkh2kravdfa21x58bd53s7acvp-bzip2-1.0.8/:/gnu/store/bzj02l1bgp7ibhxvdmpga2k5af0c4npa-file-5.44/:/gnu/store/mydmggf3qs7ha5ajkz7x250dy7cnmi2v-diffutils-3.8/:/gnu/store/jzk30pqyk3z7xlizbq6013krgyyyys39-patch-2.7.6/:/gnu/store/5sksczis0ssy8nhln62lsjfm80np01rc-findutils-4.9.0/:/gnu/store/qll484d4kizx5s1lgyjgrq2nqzq177q6-gawk-5.2.1/:/gnu/store/bjjyfa71m9zy8iyriqc9wbpg95skad90-sed-4.8/:/gnu/store/j0h6z30j13wrbch7pax9l9859c0wfvsl-grep-3.8/:/gnu/store/drsra005pzksg8z11jp4yn96sk8gkmq9-xz-5.2.8/:/gnu/store/sinrqfmja2a3ys1kmlwgpb629l4sh5rr-coreutils-9.1/:/gnu/store/kgdnsfsw8f226s6j5vldaqvc767hn8ff-make-4.3/:/gnu/store/9q7cmydxbzfpc79ybn1yn257wq547kvz-bash-minimal-5.1.16/:/gnu/store/py7qrzdb70jzkyjhggp15w57iqldv8hc-ld-wrapper-0/:/gnu/store/a7v86dd2kbi1rn9rwcw5mfw85aw9m3cf-binutils-2.38/:/gnu/store/dcrdgy1rjkh0kibpkw6v2mia7f921b27-gcc-11.3.0/:/gnu/store/3imvi8mfcsib1aiiidgr2znypih8nhmv-glibc-2.35/:/gnu/store/qqpiqxw7n69ikd28cvm78zi5z7g8y0qh-glibc-2.35-static/:/gnu/store/83rdr33pwjzimv4n0ch33lc6yf1acbry-glibc-utf8-locales-2.35/:/gnu/store/m5zdzv0igirvv51gh3wc0d7r924wxxi0-python-ply-3.11/:/gnu/store/74641jwmb7xrlqfi3sbcc3hbpiiqf4a2-libgc-8.2.2/:/gnu/store/78zgibb2nnagdskyns4wssx5zlxih3bq-libltdl-2.4.7/:/gnu/store/vvgpzs547kd9ppqks47w7b8khffyn0rp-libunistring-1.0/:/gnu/store/6qj8b1i9ynscrl6a8nqgkw787nvnf8fi-linux-libre-headers-5.15.49/' environment variable `SSL_CERT_DIR' unset environment variable `SSL_CERT_FILE' unset environment variable `GUIX_PYTHONPATH' set to `/gnu/store/yd0z1wnpm174v8kk0hjs89wcari5di9b-cxxtest-4.4/lib/python3.10/site-packages:/gnu/store/vaznv17j32jky10bi6942fdfxh7awl67-python-minimal-3.10.7/lib/python3.10/site-packages:/gnu/store/m5zdzv0igirvv51gh3wc0d7r924wxxi0-python-ply-3.11/lib/python3.10/site-packages' environment variable `PYTHONTZPATH' unset environment variable `PKG_CONFIG_PATH' set to `/gnu/store/vaznv17j32jky10bi6942fdfxh7awl67-python-minimal-3.10.7/lib/pkgconfig:/gnu/store/3ywdwbygx749dcz3hkqb34hm569k612b-gmp-6.2.1/lib/pkgconfig:/gnu/store/wcz40pkasly1dq2iqqbhmh15yzjs2lfs-guile-2.2.7/lib/pkgconfig:/gnu/store/bzj02l1bgp7ibhxvdmpga2k5af0c4npa-file-5.44/lib/pkgconfig:/gnu/store/drsra005pzksg8z11jp4yn96sk8gkmq9-xz-5.2.8/lib/pkgconfig:/gnu/store/74641jwmb7xrlqfi3sbcc3hbpiiqf4a2-libgc-8.2.2/lib/pkgconfig' environment variable `GUILE_LOAD_PATH' set to `/gnu/store/pwilnp85vp0d8kw81zp42c85ymb6ikym-atomspace-5.0.3-1.86c848d/share/guile/site/2.2' environment variable `GUILE_LOAD_COMPILED_PATH' unset environment variable `BASH_LOADABLES_PATH' unset environment variable `C_INCLUDE_PATH' set to `/gnu/store/yd0z1wnpm174v8kk0hjs89wcari5di9b-cxxtest-4.4/include:/gnu/store/vaznv17j32jky10bi6942fdfxh7awl67-python-minimal-3.10.7/include:/gnu/store/pwilnp85vp0d8kw81zp42c85ymb6ikym-atomspace-5.0.3-1.86c848d/include:/gnu/store/xvb96r08jpbxm76w37jmhjiqjsl5vc8m-cogutil-2.0.3-1.b07b41b/include:/gnu/store/3ywdwbygx749dcz3hkqb34hm569k612b-gmp-6.2.1/include:/gnu/store/wcz40pkasly1dq2iqqbhmh15yzjs2lfs-guile-2.2.7/include:/gnu/store/d66iz5kkh2kravdfa21x58bd53s7acvp-bzip2-1.0.8/include:/gnu/store/bzj02l1bgp7ibhxvdmpga2k5af0c4npa-file-5.44/include:/gnu/store/qll484d4kizx5s1lgyjgrq2nqzq177q6-gawk-5.2.1/include:/gnu/store/drsra005pzksg8z11jp4yn96sk8gkmq9-xz-5.2.8/include:/gnu/store/kgdnsfsw8f226s6j5vldaqvc767hn8ff-make-4.3/include:/gnu/store/a7v86dd2kbi1rn9rwcw5mfw85aw9m3cf-binutils-2.38/include:/gnu/store/dcrdgy1rjkh0kibpkw6v2mia7f921b27-gcc-11.3.0/include:/gnu/store/3imvi8mfcsib1aiiidgr2znypih8nhmv-glibc-2.35/include:/gnu/store/74641jwmb7xrlqfi3sbcc3hbpiiqf4a2-libgc-8.2.2/include:/gnu/store/78zgibb2nnagdskyns4wssx5zlxih3bq-libltdl-2.4.7/include:/gnu/store/vvgpzs547kd9ppqks47w7b8khffyn0rp-libunistring-1.0/include:/gnu/store/6qj8b1i9ynscrl6a8nqgkw787nvnf8fi-linux-libre-headers-5.15.49/include' environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/yd0z1wnpm174v8kk0hjs89wcari5di9b-cxxtest-4.4/include:/gnu/store/vaznv17j32jky10bi6942fdfxh7awl67-python-minimal-3.10.7/include:/gnu/store/pwilnp85vp0d8kw81zp42c85ymb6ikym-atomspace-5.0.3-1.86c848d/include:/gnu/store/xvb96r08jpbxm76w37jmhjiqjsl5vc8m-cogutil-2.0.3-1.b07b41b/include:/gnu/store/3ywdwbygx749dcz3hkqb34hm569k612b-gmp-6.2.1/include:/gnu/store/wcz40pkasly1dq2iqqbhmh15yzjs2lfs-guile-2.2.7/include:/gnu/store/d66iz5kkh2kravdfa21x58bd53s7acvp-bzip2-1.0.8/include:/gnu/store/bzj02l1bgp7ibhxvdmpga2k5af0c4npa-file-5.44/include:/gnu/store/qll484d4kizx5s1lgyjgrq2nqzq177q6-gawk-5.2.1/include:/gnu/store/drsra005pzksg8z11jp4yn96sk8gkmq9-xz-5.2.8/include:/gnu/store/kgdnsfsw8f226s6j5vldaqvc767hn8ff-make-4.3/include:/gnu/store/a7v86dd2kbi1rn9rwcw5mfw85aw9m3cf-binutils-2.38/include:/gnu/store/dcrdgy1rjkh0kibpkw6v2mia7f921b27-gcc-11.3.0/include/c++:/gnu/store/dcrdgy1rjkh0kibpkw6v2mia7f921b27-gcc-11.3.0/include:/gnu/store/3imvi8mfcsib1aiiidgr2znypih8nhmv-glibc-2.35/include:/gnu/store/74641jwmb7xrlqfi3sbcc3hbpiiqf4a2-libgc-8.2.2/include:/gnu/store/78zgibb2nnagdskyns4wssx5zlxih3bq-libltdl-2.4.7/include:/gnu/store/vvgpzs547kd9ppqks47w7b8khffyn0rp-libunistring-1.0/include:/gnu/store/6qj8b1i9ynscrl6a8nqgkw787nvnf8fi-linux-libre-headers-5.15.49/include' environment variable `LIBRARY_PATH' set to `/gnu/store/yd0z1wnpm174v8kk0hjs89wcari5di9b-cxxtest-4.4/lib:/gnu/store/vaznv17j32jky10bi6942fdfxh7awl67-python-minimal-3.10.7/lib:/gnu/store/pwilnp85vp0d8kw81zp42c85ymb6ikym-atomspace-5.0.3-1.86c848d/lib:/gnu/store/xvb96r08jpbxm76w37jmhjiqjsl5vc8m-cogutil-2.0.3-1.b07b41b/lib:/gnu/store/3ywdwbygx749dcz3hkqb34hm569k612b-gmp-6.2.1/lib:/gnu/store/wcz40pkasly1dq2iqqbhmh15yzjs2lfs-guile-2.2.7/lib:/gnu/store/d66iz5kkh2kravdfa21x58bd53s7acvp-bzip2-1.0.8/lib:/gnu/store/bzj02l1bgp7ibhxvdmpga2k5af0c4npa-file-5.44/lib:/gnu/store/qll484d4kizx5s1lgyjgrq2nqzq177q6-gawk-5.2.1/lib:/gnu/store/drsra005pzksg8z11jp4yn96sk8gkmq9-xz-5.2.8/lib:/gnu/store/a7v86dd2kbi1rn9rwcw5mfw85aw9m3cf-binutils-2.38/lib:/gnu/store/3imvi8mfcsib1aiiidgr2znypih8nhmv-glibc-2.35/lib:/gnu/store/qqpiqxw7n69ikd28cvm78zi5z7g8y0qh-glibc-2.35-static/lib:/gnu/store/83rdr33pwjzimv4n0ch33lc6yf1acbry-glibc-utf8-locales-2.35/lib:/gnu/store/m5zdzv0igirvv51gh3wc0d7r924wxxi0-python-ply-3.11/lib:/gnu/store/74641jwmb7xrlqfi3sbcc3hbpiiqf4a2-libgc-8.2.2/lib:/gnu/store/78zgibb2nnagdskyns4wssx5zlxih3bq-libltdl-2.4.7/lib:/gnu/store/vvgpzs547kd9ppqks47w7b8khffyn0rp-libunistring-1.0/lib' environment variable `GUIX_LOCPATH' set to `/gnu/store/83rdr33pwjzimv4n0ch33lc6yf1acbry-glibc-utf8-locales-2.35/lib/locale' phase `set-paths' succeeded after 0.0 seconds starting phase `install-locale' using 'en_US.utf8' locale for category "LC_ALL" phase `install-locale' succeeded after 0.0 seconds starting phase `unpack' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/LICENSE' -> `./LICENSE' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/CMakeLists.txt' -> `./CMakeLists.txt' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/.gitignore' -> `./.gitignore' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/README.md' -> `./README.md' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/Dockerfile_Eddie' -> `./bioscience/Dockerfile_Eddie' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/Dockerfile' -> `./bioscience/Dockerfile' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/fig.yml' -> `./bioscience/fig.yml' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/CMakeLists.txt' -> `./bioscience/CMakeLists.txt' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/bioscience.scm' -> `./bioscience/bioscience.scm' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/opencog.conf' -> `./bioscience/opencog.conf' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/README.md' -> `./bioscience/README.md' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/types/atom_types.script' -> `./bioscience/types/atom_types.script' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/types/CMakeLists.txt' -> `./bioscience/types/CMakeLists.txt' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/types/BioScienceTypes.cc' -> `./bioscience/types/BioScienceTypes.cc' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/relate_features_and_genes.sh' -> `./moses-scripts/relate_features_and_genes.sh' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/common.sh' -> `./moses-scripts/common.sh' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/export_models_and_fitness.sh' -> `./moses-scripts/export_models_and_fitness.sh' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/README.md' -> `./moses-scripts/README.md' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/obsolete/models_10l.scm' -> `./moses-scripts/obsolete/models_10l.scm' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/obsolete/test.sh' -> `./moses-scripts/obsolete/test.sh' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/obsolete/models_100l.scm' -> `./moses-scripts/obsolete/models_100l.scm' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/obsolete/settings.sh' -> `./moses-scripts/obsolete/settings.sh' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/obsolete/background_knowledge.scm' -> `./moses-scripts/obsolete/background_knowledge.scm' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/obsolete/models.scm' -> `./moses-scripts/obsolete/models.scm' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/obsolete/moses.sh' -> `./moses-scripts/obsolete/moses.sh' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/obsolete/process_Rdata.sh' -> `./moses-scripts/obsolete/process_Rdata.sh' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/obsolete/README.md' -> `./moses-scripts/obsolete/README.md' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/relationship-mining/obsolete/subgraph.py' -> `./relationship-mining/obsolete/subgraph.py' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/relationship-mining/obsolete/__init__.py' -> `./relationship-mining/obsolete/__init__.py' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/relationship-mining/obsolete/bio.py' -> `./relationship-mining/obsolete/bio.py' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/relationship-mining/obsolete/utilities.py' -> `./relationship-mining/obsolete/utilities.py' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/relationship-mining/obsolete/bio_scheme.scm' -> `./relationship-mining/obsolete/bio_scheme.scm' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/relationship-mining/obsolete/README.md' -> `./relationship-mining/obsolete/README.md' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/MSigDB_to_scheme.py' -> `./knowledge-import/MSigDB_to_scheme.py' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/RulesOfTranslation.txt' -> `./knowledge-import/RulesOfTranslation.txt' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SifToScheme.py' -> `./knowledge-import/SifToScheme.py' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/README.md' -> `./knowledge-import/README.md' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/GO_Annotation_scm.py' -> `./knowledge-import/SNET/GO_Annotation_scm.py' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/biogrid.py' -> `./knowledge-import/SNET/biogrid.py' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/Readme.md' -> `./knowledge-import/SNET/Readme.md' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/reactome_pathway.py' -> `./knowledge-import/SNET/reactome_pathway.py' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/gene2proteinMapping.py' -> `./knowledge-import/SNET/gene2proteinMapping.py' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/GO_scm.py' -> `./knowledge-import/SNET/GO_scm.py' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/uniprot2GO.py' -> `./knowledge-import/SNET/uniprot2GO.py' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/Physical Entity (PE) Identifier mapping.py' -> `./knowledge-import/SNET/Physical Entity (PE) Identifier mapping.py' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/uniprotIDmap.R' -> `./knowledge-import/SNET/uniprotIDmap.R' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/SMPDB_pathway.py' -> `./knowledge-import/SNET/SMPDB_pathway.py' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/current/atomese_translation.md' -> `./knowledge-import/SNET/current/atomese_translation.md' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/obsolete/lifespan_observation_to_human_homologue.R' -> `./knowledge-import/obsolete/lifespan_observation_to_human_homologue.R' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/obsolete/Aging-Mythelation.py' -> `./knowledge-import/obsolete/Aging-Mythelation.py' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/obsolete/GO_Annotation_scm.py' -> `./knowledge-import/obsolete/GO_Annotation_scm.py' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/obsolete/lifeSpanObservation_2015.py' -> `./knowledge-import/obsolete/lifeSpanObservation_2015.py' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/obsolete/MSigDB_to_scheme.py' -> `./knowledge-import/obsolete/MSigDB_to_scheme.py' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/obsolete/GO_scm.py' -> `./knowledge-import/obsolete/GO_scm.py' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/obsolete/fix_obo.sh' -> `./knowledge-import/obsolete/fix_obo.sh' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/obsolete/load_atoms.py' -> `./knowledge-import/obsolete/load_atoms.py' `/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/obsolete/README.md' -> `./knowledge-import/obsolete/README.md' phase `unpack' succeeded after 0.1 seconds starting phase `fix-unqualified-load' phase `fix-unqualified-load' succeeded after 0.0 seconds starting phase `patch-usr-bin-file' phase `patch-usr-bin-file' succeeded after 0.0 seconds starting phase `patch-source-shebangs' patch-shebang: ./knowledge-import/MSigDB_to_scheme.py: warning: no binary for interpreter `python2.7' found in $PATH patch-shebang: ./knowledge-import/SNET/GO_Annotation_scm.py: warning: no binary for interpreter `python2.7' found in $PATH patch-shebang: ./knowledge-import/SNET/GO_scm.py: warning: no binary for interpreter `python2.7' found in $PATH patch-shebang: ./knowledge-import/obsolete/Aging-Mythelation.py: warning: no binary for interpreter `python2.7' found in $PATH patch-shebang: ./knowledge-import/obsolete/GO_Annotation_scm.py: warning: no binary for interpreter `python2.7' found in $PATH patch-shebang: ./knowledge-import/obsolete/GO_scm.py: warning: no binary for interpreter `python2.7' found in $PATH patch-shebang: ./knowledge-import/obsolete/MSigDB_to_scheme.py: warning: no binary for interpreter `python2.7' found in $PATH patch-shebang: ./knowledge-import/obsolete/fix_obo.sh: changing `/bin/bash' to `/gnu/store/9q7cmydxbzfpc79ybn1yn257wq547kvz-bash-minimal-5.1.16/bin/bash' patch-shebang: ./knowledge-import/obsolete/lifeSpanObservation_2015.py: warning: no binary for interpreter `python2.7' found in $PATH patch-shebang: ./knowledge-import/obsolete/load_atoms.py: warning: no binary for interpreter `python2.7' found in $PATH patch-shebang: ./moses-scripts/export_models_and_fitness.sh: changing `/bin/bash' to `/gnu/store/9q7cmydxbzfpc79ybn1yn257wq547kvz-bash-minimal-5.1.16/bin/bash' patch-shebang: ./moses-scripts/obsolete/process_Rdata.sh: changing `/bin/bash' to `/gnu/store/9q7cmydxbzfpc79ybn1yn257wq547kvz-bash-minimal-5.1.16/bin/bash' patch-shebang: ./moses-scripts/obsolete/test.sh: changing `/bin/bash' to `/gnu/store/9q7cmydxbzfpc79ybn1yn257wq547kvz-bash-minimal-5.1.16/bin/bash' patch-shebang: ./moses-scripts/relate_features_and_genes.sh: changing `/bin/bash' to `/gnu/store/9q7cmydxbzfpc79ybn1yn257wq547kvz-bash-minimal-5.1.16/bin/bash' phase `patch-source-shebangs' succeeded after 0.1 seconds starting phase `configure' source directory: "/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source" (relative from build: "../source") build directory: "/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build" running 'cmake' with arguments ("../source" "-DCMAKE_BUILD_TYPE=RelWithDebInfo" "-DCMAKE_INSTALL_PREFIX=/gnu/store/7bmlhxxj6ayck3z36ja2lv6vxb3n0kk4-agi-bio-0-1.b5c6f3d" "-DCMAKE_INSTALL_LIBDIR=lib" "-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE" "-DCMAKE_INSTALL_RPATH=/gnu/store/7bmlhxxj6ayck3z36ja2lv6vxb3n0kk4-agi-bio-0-1.b5c6f3d/lib" "-DCMAKE_VERBOSE_MAKEFILE=ON" "-DGUILE_INCLUDE_DIR=/gnu/store/wcz40pkasly1dq2iqqbhmh15yzjs2lfs-guile-2.2.7/include/guile/2.2/" "-DGUILE_SITE_DIR=/gnu/store/7bmlhxxj6ayck3z36ja2lv6vxb3n0kk4-agi-bio-0-1.b5c6f3d/share/guile/site/2.2/") -- The C compiler identification is GNU 11.3.0 -- The CXX compiler identification is GNU 11.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /gnu/store/dcrdgy1rjkh0kibpkw6v2mia7f921b27-gcc-11.3.0/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /gnu/store/dcrdgy1rjkh0kibpkw6v2mia7f921b27-gcc-11.3.0/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Build type: RelWithDebInfo -- CogUtil version 2.0.3 found. -- AtomSpace found. -- Guile (2.2.7 >= 2.2.2) was found. -- Found Python3Interp: /gnu/store/vaznv17j32jky10bi6942fdfxh7awl67-python-minimal-3.10.7/bin/python3 -- Python 3.10.7 interpreter found. Building for Linux 5.11.10 The following components will be built: ----------------------------------------------- Bioscience - Bioscience atom types. -- Configuring done CMake Warning (dev) at bioscience/types/CMakeLists.txt:14 (ADD_LIBRARY): Policy CMP0115 is not set: Source file extensions must be explicit. Run "cmake --help-policy CMP0115" for policy details. Use the cmake_policy command to set the policy and suppress this warning. File: /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience/types/BioScienceTypes.cc This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_INSTALL_LIBDIR -- Build files have been written to: /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build phase `configure' succeeded after 4.2 seconds starting phase `patch-generated-file-shebangs' phase `patch-generated-file-shebangs' succeeded after 0.1 seconds starting phase `build' /gnu/store/v9d5kgjpkcgfwc5k1jsq8a6i2qxmp9fw-cmake-minimal-3.24.2/bin/cmake -S/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source -B/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build --check-build-system CMakeFiles/Makefile.cmake 0 /gnu/store/v9d5kgjpkcgfwc5k1jsq8a6i2qxmp9fw-cmake-minimal-3.24.2/bin/cmake -E cmake_progress_start /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/CMakeFiles /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' make -f bioscience/CMakeFiles/SCM_CONFIG.dir/build.make bioscience/CMakeFiles/SCM_CONFIG.dir/depend make -f bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/build.make bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/depend make -f bioscience/types/CMakeFiles/bioscience_atom_types.dir/build.make bioscience/types/CMakeFiles/bioscience_atom_types.dir/depend make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build && /gnu/store/v9d5kgjpkcgfwc5k1jsq8a6i2qxmp9fw-cmake-minimal-3.24.2/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/CMakeFiles/SCM_CONFIG.dir/DependInfo.cmake --color= make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build && /gnu/store/v9d5kgjpkcgfwc5k1jsq8a6i2qxmp9fw-cmake-minimal-3.24.2/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/DependInfo.cmake --color= make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build && /gnu/store/v9d5kgjpkcgfwc5k1jsq8a6i2qxmp9fw-cmake-minimal-3.24.2/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience/types /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types/CMakeFiles/bioscience_atom_types.dir/DependInfo.cmake --color= make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' make -f bioscience/CMakeFiles/SCM_CONFIG.dir/build.make bioscience/CMakeFiles/SCM_CONFIG.dir/build make -f bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/build.make bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/build make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' make -f bioscience/types/CMakeFiles/bioscience_atom_types.dir/build.make bioscience/types/CMakeFiles/bioscience_atom_types.dir/build make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' make[2]: Nothing to be done for 'bioscience/CMakeFiles/SCM_CONFIG.dir/build'. make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience && /gnu/store/v9d5kgjpkcgfwc5k1jsq8a6i2qxmp9fw-cmake-minimal-3.24.2/bin/cmake -E copy /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience///bioscience.scm /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/opencog/scm//opencog/bioscience.scm make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' [ 0%] Built target SCM_CONFIG make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' [ 33%] Generating opencog types cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types && /gnu/store/v9d5kgjpkcgfwc5k1jsq8a6i2qxmp9fw-cmake-minimal-3.24.2/bin/cmake -DSCRIPT_FILE="/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience/types/atom_types.script" -DHEADER_FILE="/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types/atom_types.h" -DDEFINITIONS_FILE="/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types/atom_types.definitions" -DINHERITANCE_FILE="/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types/atom_types.inheritance" -DSCM_FILE="/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types/bioscience_types.scm" -DPYTHON_FILE="/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types/bioscience_types.pyx" -P /gnu/store/pwilnp85vp0d8kw81zp42c85ymb6ikym-atomspace-5.0.3-1.86c848d/share/opencog/cmake/OpenCogAtomTypes.cmake [ 33%] Built target COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience -- Atom type name: GeneNode Gene -- Atom type name: MoleculeNode Molecule make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' [ 33%] Built target bioscience_atom_types make -f bioscience/types/CMakeFiles/bioscience-types.dir/build.make bioscience/types/CMakeFiles/bioscience-types.dir/depend make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build && /gnu/store/v9d5kgjpkcgfwc5k1jsq8a6i2qxmp9fw-cmake-minimal-3.24.2/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience/types /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types/CMakeFiles/bioscience-types.dir/DependInfo.cmake --color= make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' make -f bioscience/types/CMakeFiles/bioscience-types.dir/build.make bioscience/types/CMakeFiles/bioscience-types.dir/build make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' [ 66%] Building CXX object bioscience/types/CMakeFiles/bioscience-types.dir/BioScienceTypes.cc.o cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types && /gnu/store/dcrdgy1rjkh0kibpkw6v2mia7f921b27-gcc-11.3.0/bin/c++ -DGUILE_SITE_DIR=\"/gnu/store/7bmlhxxj6ayck3z36ja2lv6vxb3n0kk4-agi-bio-0-1.b5c6f3d/share/guile/site/2.2/\" -DHAVE_ATOMSPACE -DHAVE_COGUTIL -DHAVE_GUILE -DHAVE_GUILE2 -DHAVE_GUILE_2_2 -DPROJECT_BINARY_DIR=\"/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build\" -DPROJECT_SOURCE_DIR=\"/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source\" -Dbioscience_types_EXPORTS -I/gnu/store/wcz40pkasly1dq2iqqbhmh15yzjs2lfs-guile-2.2.7/include/guile/2.2 -I/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source -I/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build -Wall -fPIC -fstack-protector -Wno-variadic-macros -fopenmp -std=gnu++14 -O2 -g -DNDEBUG -fPIC -MD -MT bioscience/types/CMakeFiles/bioscience-types.dir/BioScienceTypes.cc.o -MF CMakeFiles/bioscience-types.dir/BioScienceTypes.cc.o.d -o CMakeFiles/bioscience-types.dir/BioScienceTypes.cc.o -c /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience/types/BioScienceTypes.cc [100%] Linking CXX shared library libbioscience-types.so cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types && /gnu/store/v9d5kgjpkcgfwc5k1jsq8a6i2qxmp9fw-cmake-minimal-3.24.2/bin/cmake -E cmake_link_script CMakeFiles/bioscience-types.dir/link.txt --verbose=1 /gnu/store/dcrdgy1rjkh0kibpkw6v2mia7f921b27-gcc-11.3.0/bin/c++ -fPIC -Wall -fPIC -fstack-protector -Wno-variadic-macros -fopenmp -std=gnu++14 -O2 -g -DNDEBUG -shared -Wl,-soname,libbioscience-types.so -o libbioscience-types.so "CMakeFiles/bioscience-types.dir/BioScienceTypes.cc.o" -Wl,-rpath,/gnu/store/pwilnp85vp0d8kw81zp42c85ymb6ikym-atomspace-5.0.3-1.86c848d/lib/opencog:/gnu/store/xvb96r08jpbxm76w37jmhjiqjsl5vc8m-cogutil-2.0.3-1.b07b41b/lib/opencog:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: -lpthread /gnu/store/pwilnp85vp0d8kw81zp42c85ymb6ikym-atomspace-5.0.3-1.86c848d/lib/opencog/libatom_types.so -lpthread /gnu/store/xvb96r08jpbxm76w37jmhjiqjsl5vc8m-cogutil-2.0.3-1.b07b41b/lib/opencog/libcogutil.so make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' [100%] Built target bioscience-types make[1]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' /gnu/store/v9d5kgjpkcgfwc5k1jsq8a6i2qxmp9fw-cmake-minimal-3.24.2/bin/cmake -E cmake_progress_start /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/CMakeFiles 0 phase `build' succeeded after 6.2 seconds starting phase `check' test suite not run phase `check' succeeded after 0.0 seconds starting phase `install' /gnu/store/v9d5kgjpkcgfwc5k1jsq8a6i2qxmp9fw-cmake-minimal-3.24.2/bin/cmake -S/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source -B/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build --check-build-system CMakeFiles/Makefile.cmake 0 /gnu/store/v9d5kgjpkcgfwc5k1jsq8a6i2qxmp9fw-cmake-minimal-3.24.2/bin/cmake -E cmake_progress_start /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/CMakeFiles /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' make -f bioscience/CMakeFiles/SCM_CONFIG.dir/build.make bioscience/CMakeFiles/SCM_CONFIG.dir/depend make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build && /gnu/store/v9d5kgjpkcgfwc5k1jsq8a6i2qxmp9fw-cmake-minimal-3.24.2/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/CMakeFiles/SCM_CONFIG.dir/DependInfo.cmake --color= make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' make -f bioscience/CMakeFiles/SCM_CONFIG.dir/build.make bioscience/CMakeFiles/SCM_CONFIG.dir/build make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' make[2]: Nothing to be done for 'bioscience/CMakeFiles/SCM_CONFIG.dir/build'. make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' [ 0%] Built target SCM_CONFIG make -f bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/build.make bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/depend make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build && /gnu/store/v9d5kgjpkcgfwc5k1jsq8a6i2qxmp9fw-cmake-minimal-3.24.2/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/DependInfo.cmake --color= make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' make -f bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/build.make bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/build make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience && /gnu/store/v9d5kgjpkcgfwc5k1jsq8a6i2qxmp9fw-cmake-minimal-3.24.2/bin/cmake -E copy /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience///bioscience.scm /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/opencog/scm//opencog/bioscience.scm make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' [ 0%] Built target COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience make -f bioscience/types/CMakeFiles/bioscience_atom_types.dir/build.make bioscience/types/CMakeFiles/bioscience_atom_types.dir/depend make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build && /gnu/store/v9d5kgjpkcgfwc5k1jsq8a6i2qxmp9fw-cmake-minimal-3.24.2/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience/types /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types/CMakeFiles/bioscience_atom_types.dir/DependInfo.cmake --color= make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' make -f bioscience/types/CMakeFiles/bioscience_atom_types.dir/build.make bioscience/types/CMakeFiles/bioscience_atom_types.dir/build make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' make[2]: Nothing to be done for 'bioscience/types/CMakeFiles/bioscience_atom_types.dir/build'. make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' [ 33%] Built target bioscience_atom_types make -f bioscience/types/CMakeFiles/bioscience-types.dir/build.make bioscience/types/CMakeFiles/bioscience-types.dir/depend make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build && /gnu/store/v9d5kgjpkcgfwc5k1jsq8a6i2qxmp9fw-cmake-minimal-3.24.2/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience/types /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types/CMakeFiles/bioscience-types.dir/DependInfo.cmake --color= Consolidate compiler generated dependencies of target bioscience-types make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' make -f bioscience/types/CMakeFiles/bioscience-types.dir/build.make bioscience/types/CMakeFiles/bioscience-types.dir/build make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' make[2]: Nothing to be done for 'bioscience/types/CMakeFiles/bioscience-types.dir/build'. make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' [100%] Built target bioscience-types make[1]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' /gnu/store/v9d5kgjpkcgfwc5k1jsq8a6i2qxmp9fw-cmake-minimal-3.24.2/bin/cmake -E cmake_progress_start /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build' Install the project... /gnu/store/v9d5kgjpkcgfwc5k1jsq8a6i2qxmp9fw-cmake-minimal-3.24.2/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /gnu/store/7bmlhxxj6ayck3z36ja2lv6vxb3n0kk4-agi-bio-0-1.b5c6f3d/share/guile/site/2.2/opencog/bio-config.scm -- Installing: /gnu/store/7bmlhxxj6ayck3z36ja2lv6vxb3n0kk4-agi-bio-0-1.b5c6f3d/share/guile/site/2.2//opencog/bioscience.scm -- Installing: /gnu/store/7bmlhxxj6ayck3z36ja2lv6vxb3n0kk4-agi-bio-0-1.b5c6f3d/lib/opencog/libbioscience-types.so -- Set runtime path of "/gnu/store/7bmlhxxj6ayck3z36ja2lv6vxb3n0kk4-agi-bio-0-1.b5c6f3d/lib/opencog/libbioscience-types.so" to "/gnu/store/7bmlhxxj6ayck3z36ja2lv6vxb3n0kk4-agi-bio-0-1.b5c6f3d/lib/opencog:/gnu/store/pwilnp85vp0d8kw81zp42c85ymb6ikym-atomspace-5.0.3-1.86c848d/lib/opencog:/gnu/store/xvb96r08jpbxm76w37jmhjiqjsl5vc8m-cogutil-2.0.3-1.b07b41b/lib/opencog" -- Installing: /gnu/store/7bmlhxxj6ayck3z36ja2lv6vxb3n0kk4-agi-bio-0-1.b5c6f3d/include/opencog/bioscience/types/atom_types.h -- Installing: /gnu/store/7bmlhxxj6ayck3z36ja2lv6vxb3n0kk4-agi-bio-0-1.b5c6f3d/share/guile/site/2.2/opencog/bioscience/types/bioscience_types.scm phase `install' succeeded after 0.8 seconds starting phase `patch-shebangs' phase `patch-shebangs' succeeded after 0.0 seconds starting phase `strip' stripping binaries in "/gnu/store/7bmlhxxj6ayck3z36ja2lv6vxb3n0kk4-agi-bio-0-1.b5c6f3d/lib" with "strip" and flags ("--strip-unneeded" "--enable-deterministic-archives") phase `strip' succeeded after 0.0 seconds starting phase `validate-runpath' validating RUNPATH of 1 binaries in "/gnu/store/7bmlhxxj6ayck3z36ja2lv6vxb3n0kk4-agi-bio-0-1.b5c6f3d/lib"... phase `validate-runpath' succeeded after 0.0 seconds starting phase `validate-documentation-location' phase `validate-documentation-location' succeeded after 0.0 seconds starting phase `delete-info-dir-file' phase `delete-info-dir-file' succeeded after 0.0 seconds starting phase `patch-dot-desktop-files' phase `patch-dot-desktop-files' succeeded after 0.0 seconds starting phase `make-dynamic-linker-cache' phase `make-dynamic-linker-cache' succeeded after 0.0 seconds starting phase `install-license-files' installing 1 license files from '../source' phase `install-license-files' succeeded after 0.0 seconds starting phase `reset-gzip-timestamps' phase `reset-gzip-timestamps' succeeded after 0.0 seconds starting phase `compress-documentation' phase `compress-documentation' succeeded after 0.0 seconds