starting phase `set-SOURCE-DATE-EPOCH' phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds starting phase `set-paths' environment variable `PATH' set to `/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/bin:/gnu/store/3lx5rw6aazp1cskcbmhd3mb842zanj88-tar-1.32/bin:/gnu/store/43y9wjllnr1sczwlfi0vxh27zp28zixh-gzip-1.10/bin:/gnu/store/mhbai8872azipnxr9lw3gr8jqxf6348j-bzip2-1.0.8/bin:/gnu/store/b2m3hnb7gr526jcs8xj0d7fig73qlhv0-xz-5.2.4/bin:/gnu/store/ivj4vx0mc2fz0ipi5knb32r6d992y0b0-file-5.38/bin:/gnu/store/hn05v0h7qiqdq59avr247a3wd8kpsvg0-diffutils-3.7/bin:/gnu/store/4s297bh5gg8dixd9n6xkw2z73cxd1v91-patch-2.7.6/bin:/gnu/store/9gawha19xlpkz9qk6z9lcgfxfq5bj27a-findutils-4.7.0/bin:/gnu/store/3d1n6zsw6zli7agb0ica7x4145haga4z-gawk-5.0.1/bin:/gnu/store/bqcvgh7q4316fynb9wg6akvlk9ikdjj5-sed-4.8/bin:/gnu/store/iqxcm511fivbrlik4i7ly3dxn53qm689-grep-3.4/bin:/gnu/store/x5z9z2d06w4yj4kq18i4b5q2yxg0w9dh-coreutils-8.32/bin:/gnu/store/igqylz2nzjk6x4ax07i6838jdp22yjm6-make-4.3/bin:/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin:/gnu/store/2nygnpi7zns33k9k1dr3y0md5kg8b876-ld-wrapper-0/bin:/gnu/store/ghy9qhlb3ad9xmxxhfmdia643xfnhysa-binutils-2.34/bin:/gnu/store/h1cy6hq72yxnwi4nh0h1fjz8kxgfp8wy-gcc-7.5.0/bin:/gnu/store/sipyfs2540b48b2sb9j8ypmybja1dvqb-glibc-2.31/bin:/gnu/store/sipyfs2540b48b2sb9j8ypmybja1dvqb-glibc-2.31/sbin:/gnu/store/6rs338gc0mc05zqkpmk7n2rhc1y2zw5q-curl-7.74.0/bin' environment variable `R_LIBS_SITE' set to `/gnu/store/9mnkb6xshsraj3h568ldj6hxkb7rcp43-r-biostrings-2.58.0/site-library/:/gnu/store/b2yv09ra9sj0w36w5gl2rw052nabcfjh-r-bsgenome-1.58.0/site-library/:/gnu/store/25p1ln0d5944da8w96nar2gjva7sh4np-r-genomicranges-1.42.0/site-library/:/gnu/store/7l7956bqls41s3s7n057fvhs08s43v4l-r-iranges-2.24.1/site-library/:/gnu/store/0zqcasfgv0dc5jbkcczw0h6sh6l6b67f-r-seqlogo-1.56.0/site-library/:/gnu/store/y8d3jq0xyrbgfyh6w7x8v45wk5xgyslr-r-xvector-0.30.0/site-library/:/gnu/store/8skp9l2f6mn6jndn2d9dk2daijg8kqj7-r-s4vectors-0.28.1/site-library/:/gnu/store/bizvs38vq8f6311c6pdifi33qailp4db-r-crayon-1.4.1/site-library/:/gnu/store/0m3nxxwixchl6kqlgzmlp2a78ybw1p8s-r-biocgenerics-0.36.1/site-library/:/gnu/store/8fxgbkjychmcvpjrg5wdh0766hii6rip-r-rtracklayer-1.50.0/site-library/:/gnu/store/6fhz7dcb9dhnn39kf5iv8kzgnyhz1v8a-r-rsamtools-2.6.0/site-library/:/gnu/store/68qj8xsyhhg6y5nxbj053x681y1p4qyk-r-matrixstats-0.58.0/site-library/:/gnu/store/ymgxz51cwd7hshm7w01glb2mq3ipg6jp-r-genomeinfodb-1.26.7/site-library/:/gnu/store/0459y9iw3d2jkk2951yn6ci0fy3pm5fl-r-zlibbioc-1.36.0/site-library/:/gnu/store/7kfzqq8nixkh2w02427nz6qf29fh16ma-r-xml-3.99-0.6/site-library/:/gnu/store/95yb26gqni9zllq5i58w8wl3w976s2zf-r-rcurl-1.95-0.1.2/site-library/:/gnu/store/yh37hjywbcck9qbw5cas0ylzxb7hy7mv-r-genomicalignments-1.26.0/site-library/:/gnu/store/pmplriw4vv177lpwdcx3j7ff8r2av3rk-r-rhtslib-1.22.0/site-library/:/gnu/store/aypmh6y4wcpj39mprvmmpn1m0hy2lkhn-r-bitops-1.0-7/site-library/:/gnu/store/jjsnxz594f3zjsdj8rdrxlbb2xgd9ifd-r-biocparallel-1.24.1/site-library/:/gnu/store/vqav2qvqw4fq3vqf5pngffl32427fr9a-r-genomeinfodbdata-1.2.0/site-library/:/gnu/store/6cp5rfr45dv1khd8q9bd19ib2cy0209a-r-summarizedexperiment-1.20.0/site-library/:/gnu/store/ymvj2bsjsb0bl32ry1hb90vnvjd5nkps-r-bh-1.75.0-0/site-library/:/gnu/store/9n772f5n49ccm8yl0d5m7wx6jff9axx9-r-snow-0.4-3/site-library/:/gnu/store/i7k34ljswdzh0vi564ljxvcvgdmdxnb3-r-futile-logger-1.4.3/site-library/:/gnu/store/fgk70sd0v1zyxbvf9lfqg38h8rzpmbhx-r-matrixgenerics-1.2.1/site-library/:/gnu/store/gyfz9jlans13cmla0xfyr9wwkqr431jy-r-matrix-1.3-2/site-library/:/gnu/store/0my40bjmnvbbhjqs29lzji31wszr50c3-r-delayedarray-0.16.3/site-library/:/gnu/store/w24g5lif418gkwxkcl7vhrh2n07p700m-r-biobase-2.50.0/site-library/:/gnu/store/bg1wvphycc635aqsiv2k3vv8rsqsg5zh-r-lambda-r-1.2.4/site-library/:/gnu/store/lg1yz6di6lnka6z9gxqil6xa9fpykwyh-r-futile-options-1.0.1/site-library/:/gnu/store/zlyvm96djhzgs6rnlp9lh8xny08dmnl3-r-lattice-0.20-44/site-library/:/gnu/store/91drkd3x58sfpii505qi2livmhq0a4ih-r-formatr-1.9/site-library/' environment variable `BASH_LOADABLES_PATH' unset environment variable `C_INCLUDE_PATH' set to `/gnu/store/mhbai8872azipnxr9lw3gr8jqxf6348j-bzip2-1.0.8/include:/gnu/store/b2m3hnb7gr526jcs8xj0d7fig73qlhv0-xz-5.2.4/include:/gnu/store/ivj4vx0mc2fz0ipi5knb32r6d992y0b0-file-5.38/include:/gnu/store/3d1n6zsw6zli7agb0ica7x4145haga4z-gawk-5.0.1/include:/gnu/store/igqylz2nzjk6x4ax07i6838jdp22yjm6-make-4.3/include:/gnu/store/ghy9qhlb3ad9xmxxhfmdia643xfnhysa-binutils-2.34/include:/gnu/store/h1cy6hq72yxnwi4nh0h1fjz8kxgfp8wy-gcc-7.5.0/include:/gnu/store/sipyfs2540b48b2sb9j8ypmybja1dvqb-glibc-2.31/include:/gnu/store/sg9ks2n9ikj4952zmf2g851g206zb0r9-linux-libre-headers-5.4.20/include:/gnu/store/hp2ql9qnrrzh50894ap6f80fwig9qvh8-zlib-1.2.11/include:/gnu/store/6rs338gc0mc05zqkpmk7n2rhc1y2zw5q-curl-7.74.0/include' environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/mhbai8872azipnxr9lw3gr8jqxf6348j-bzip2-1.0.8/include:/gnu/store/b2m3hnb7gr526jcs8xj0d7fig73qlhv0-xz-5.2.4/include:/gnu/store/ivj4vx0mc2fz0ipi5knb32r6d992y0b0-file-5.38/include:/gnu/store/3d1n6zsw6zli7agb0ica7x4145haga4z-gawk-5.0.1/include:/gnu/store/igqylz2nzjk6x4ax07i6838jdp22yjm6-make-4.3/include:/gnu/store/ghy9qhlb3ad9xmxxhfmdia643xfnhysa-binutils-2.34/include:/gnu/store/h1cy6hq72yxnwi4nh0h1fjz8kxgfp8wy-gcc-7.5.0/include/c++:/gnu/store/h1cy6hq72yxnwi4nh0h1fjz8kxgfp8wy-gcc-7.5.0/include:/gnu/store/sipyfs2540b48b2sb9j8ypmybja1dvqb-glibc-2.31/include:/gnu/store/sg9ks2n9ikj4952zmf2g851g206zb0r9-linux-libre-headers-5.4.20/include:/gnu/store/hp2ql9qnrrzh50894ap6f80fwig9qvh8-zlib-1.2.11/include:/gnu/store/6rs338gc0mc05zqkpmk7n2rhc1y2zw5q-curl-7.74.0/include' environment variable `LIBRARY_PATH' set to `/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib:/gnu/store/mhbai8872azipnxr9lw3gr8jqxf6348j-bzip2-1.0.8/lib:/gnu/store/b2m3hnb7gr526jcs8xj0d7fig73qlhv0-xz-5.2.4/lib:/gnu/store/ivj4vx0mc2fz0ipi5knb32r6d992y0b0-file-5.38/lib:/gnu/store/3d1n6zsw6zli7agb0ica7x4145haga4z-gawk-5.0.1/lib:/gnu/store/ghy9qhlb3ad9xmxxhfmdia643xfnhysa-binutils-2.34/lib:/gnu/store/sipyfs2540b48b2sb9j8ypmybja1dvqb-glibc-2.31/lib:/gnu/store/q5xs9789fyb5rnnr1nvq3zjd8biif14y-glibc-2.31-static/lib:/gnu/store/aybfkaw4fasp8hk1hzk3npmi952g11a3-glibc-utf8-locales-2.31/lib:/gnu/store/hp2ql9qnrrzh50894ap6f80fwig9qvh8-zlib-1.2.11/lib:/gnu/store/6rs338gc0mc05zqkpmk7n2rhc1y2zw5q-curl-7.74.0/lib' environment variable `GUIX_LOCPATH' set to `/gnu/store/aybfkaw4fasp8hk1hzk3npmi952g11a3-glibc-utf8-locales-2.31/lib/locale' environment variable `SSL_CERT_DIR' unset environment variable `SSL_CERT_FILE' unset environment variable `CURL_CA_BUNDLE' unset phase `set-paths' succeeded after 0.0 seconds starting phase `install-locale' using 'en_US.utf8' locale for category "LC_ALL" phase `install-locale' succeeded after 0.0 seconds starting phase `unpack' rGADEM/DESCRIPTION rGADEM/NAMESPACE rGADEM/R/ rGADEM/R/AllClasses.R rGADEM/R/AllMethods.R rGADEM/R/GADEM.R rGADEM/R/readGademPWMFile.R rGADEM/R/readPWMfile.R rGADEM/R/readTransfacFile.R rGADEM/R/zzz.R rGADEM/build/ rGADEM/build/vignette.rds rGADEM/configure rGADEM/configure.ac rGADEM/configure.win rGADEM/inst/ rGADEM/inst/doc/ rGADEM/inst/doc/rGADEM.R rGADEM/inst/doc/rGADEM.Rnw rGADEM/inst/doc/rGADEM.pdf rGADEM/inst/extdata/ rGADEM/inst/extdata/Test_100.bed rGADEM/inst/extdata/Test_100.fasta rGADEM/inst/extdata/jaspar2009.txt rGADEM/install-sh rGADEM/man/ rGADEM/man/GADEM.Rd rGADEM/man/align-class.Rd rGADEM/man/gadem-class.Rd rGADEM/man/motif-class.Rd rGADEM/man/parameters-class.Rd rGADEM/man/readPWMfile.Rd rGADEM/src/ rGADEM/src/Gadem_Analysis.c rGADEM/src/Makevars rGADEM/src/Makevars.in rGADEM/src/Makevars.win.in rGADEM/src/align_sites.c rGADEM/src/alloc.c rGADEM/src/alloc.h rGADEM/src/background.c rGADEM/src/base_frequency.c rGADEM/src/check_convergence.c rGADEM/src/check_pwm_dist.c rGADEM/src/config.h rGADEM/src/config.h.in rGADEM/src/consensus.c rGADEM/src/construct_pwm.c rGADEM/src/copy_pwm.c rGADEM/src/crossover.c rGADEM/src/defines.h rGADEM/src/effect_seq_len.c rGADEM/src/evalue_meme.c rGADEM/src/evalue_meme.h rGADEM/src/extend_alignment.c rGADEM/src/gadem.h rGADEM/src/initial_population.c rGADEM/src/mask_sites.c rGADEM/src/mutation.c rGADEM/src/normalization.c rGADEM/src/output.c rGADEM/src/pwm_score_distr.c rGADEM/src/random.h rGADEM/src/read_matrix.c rGADEM/src/read_pwm0.c rGADEM/src/read_seq.c rGADEM/src/reverse_seq.c rGADEM/src/sample_wo_replacement.c rGADEM/src/scan_sites.c rGADEM/src/score_subsequence.c rGADEM/src/selection.c rGADEM/src/sort.c rGADEM/src/top_kmers.c rGADEM/src/transform_pwm.c rGADEM/src/weights.c rGADEM/vignettes/ rGADEM/vignettes/rGADEM.Rnw phase `unpack' succeeded after 0.0 seconds starting phase `patch-usr-bin-file' phase `patch-usr-bin-file' succeeded after 0.0 seconds starting phase `patch-source-shebangs' patch-shebang: ./configure: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh' patch-shebang: ./install-sh: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh' phase `patch-source-shebangs' succeeded after 0.0 seconds starting phase `patch-generated-file-shebangs' phase `patch-generated-file-shebangs' succeeded after 0.0 seconds starting phase `install' * installing *source* package ‘rGADEM’ ... ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for gcc option to support OpenMP... -fopenmp checking for grep that handles long lines and -e... /gnu/store/iqxcm511fivbrlik4i7ly3dxn53qm689-grep-3.4/bin/grep checking for egrep... /gnu/store/iqxcm511fivbrlik4i7ly3dxn53qm689-grep-3.4/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dispatch/dispatch.h usability... no checking dispatch/dispatch.h presence... no checking for dispatch/dispatch.h... no checking whether OpenMP will work in a package... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/config.h config.status: src/config.h is unchanged ** libs gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c Gadem_Analysis.c -o Gadem_Analysis.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c align_sites.c -o align_sites.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c alloc.c -o alloc.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c background.c -o background.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c base_frequency.c -o base_frequency.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c check_convergence.c -o check_convergence.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c check_pwm_dist.c -o check_pwm_dist.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c consensus.c -o consensus.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c construct_pwm.c -o construct_pwm.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c copy_pwm.c -o copy_pwm.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c crossover.c -o crossover.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c effect_seq_len.c -o effect_seq_len.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c evalue_meme.c -o evalue_meme.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c extend_alignment.c -o extend_alignment.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c initial_population.c -o initial_population.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c mask_sites.c -o mask_sites.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c mutation.c -o mutation.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c normalization.c -o normalization.o normalization.c: In function ‘range’: normalization.c:124:13: warning: implicit declaration of function ‘Rprintf’; did you mean ‘dprintf’? [-Wimplicit-function-declaration] if(i==20) Rprintf("score is smaller than 10e-20\n"); ^~~~~~~ dprintf gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c output.c -o output.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c pwm_score_distr.c -o pwm_score_distr.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c read_matrix.c -o read_matrix.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c read_pwm0.c -o read_pwm0.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c read_seq.c -o read_seq.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c reverse_seq.c -o reverse_seq.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c sample_wo_replacement.c -o sample_wo_replacement.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c scan_sites.c -o scan_sites.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c score_subsequence.c -o score_subsequence.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c selection.c -o selection.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c sort.c -o sort.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c top_kmers.c -o top_kmers.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c transform_pwm.c -o transform_pwm.o gcc -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -g -O2 -c weights.c -o weights.o gcc -shared -L/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/lib -L/usr/local/lib -o rGADEM.so Gadem_Analysis.o align_sites.o alloc.o background.o base_frequency.o check_convergence.o check_pwm_dist.o consensus.o construct_pwm.o copy_pwm.o crossover.o effect_seq_len.o evalue_meme.o extend_alignment.o initial_population.o mask_sites.o mutation.o normalization.o output.o pwm_score_distr.o read_matrix.o read_pwm0.o read_seq.o reverse_seq.o sample_wo_replacement.o scan_sites.o score_subsequence.o selection.o sort.o top_kmers.o transform_pwm.o weights.o -fopenmp -L/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/lib -lR installing to /gnu/store/8x08sm2zjpa5ms99b8nbrp3wqj0257mx-r-rgadem-2.38.0/site-library/00LOCK-rGADEM/00new/rGADEM/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rGADEM) phase `install' succeeded after 45.0 seconds starting phase `check' phase `check' succeeded after 0.0 seconds starting phase `patch-shebangs' phase `patch-shebangs' succeeded after 0.0 seconds starting phase `strip' phase `strip' succeeded after 0.0 seconds starting phase `validate-runpath' phase `validate-runpath' succeeded after 0.0 seconds starting phase `validate-documentation-location' phase `validate-documentation-location' succeeded after 0.0 seconds starting phase `delete-info-dir-file' phase `delete-info-dir-file' succeeded after 0.0 seconds starting phase `patch-dot-desktop-files' phase `patch-dot-desktop-files' succeeded after 0.0 seconds starting phase `install-license-files' installing 0 license files from '.' phase `install-license-files' succeeded after 0.0 seconds starting phase `reset-gzip-timestamps' phase `reset-gzip-timestamps' succeeded after 0.0 seconds starting phase `compress-documentation' phase `compress-documentation' succeeded after 0.0 seconds