starting phase `set-SOURCE-DATE-EPOCH' phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds starting phase `set-paths' environment variable `PATH' set to `/gnu/store/7nxvcm0jk30ipzbbw3k7rbljymmsqpkp-r-minimal-4.0.4/bin:/gnu/store/i4d6inc70qlnq75l5iigi7h5l35s8cw6-gsl-2.6/bin:/gnu/store/gww59gv5qxbfijg3vk5y182im7923s06-tar-1.32/bin:/gnu/store/2ayciqwxddkzq183dac82ijljc14j4zj-gzip-1.10/bin:/gnu/store/n1jk0w2wa4vpwmixaqn2y3la1l2sizzi-bzip2-1.0.8/bin:/gnu/store/7p36raqgk6vn47bflxc9bsclqiib3phi-xz-5.2.4/bin:/gnu/store/lpkf3ydcdvxn8gcrzaq9cp3ri05h8qhs-file-5.38/bin:/gnu/store/6gqaw09zqw8w0vcax6simlq71bq7l5r0-diffutils-3.7/bin:/gnu/store/qw20chpgkgbcqmzhs60c8hjl1hmblyc8-patch-2.7.6/bin:/gnu/store/b5y5scfmh2d8kxcpl9p84294z2198cgf-findutils-4.7.0/bin:/gnu/store/9iwlsj7d6ffqhshy8qshf7p4fqwfwrvn-gawk-5.0.1/bin:/gnu/store/q1nfjb24vqjs1cgi8mlnskw34h16y09r-sed-4.8/bin:/gnu/store/4qr6mcvsxyzknxa7x1wny8x30f5i0r3n-grep-3.4/bin:/gnu/store/2v61vg0bizgrhybkqbrki2k7kr094waz-coreutils-8.32/bin:/gnu/store/b7jbh7kzzig0bxfswdj8nfj9bkljyyya-make-4.3/bin:/gnu/store/v1g7f3p4f0851mywrla8qmr9hb8jgfjr-bash-minimal-5.0.16/bin:/gnu/store/dyqxnydqk1810afjfbqzfvh0n83xyl62-ld-wrapper-0/bin:/gnu/store/50lyzn9bz6x4da66648kry29wn8afird-binutils-2.34/bin:/gnu/store/afpgzln8860m6yfhxy6i8n9rywbp85cy-gcc-7.5.0/bin:/gnu/store/z4li262il798hbl0l1h1k3a5g7r6bffa-glibc-2.31/bin:/gnu/store/z4li262il798hbl0l1h1k3a5g7r6bffa-glibc-2.31/sbin' environment variable `R_LIBS_SITE' set to `/gnu/store/z1wlvf0b376a3zs2kpchmfmqy9wvi4fz-r-modeltools-0.2-23/site-library/:/gnu/store/6v9hic4rblgnx3qv2g9ww6q7nj3qywyf-r-slam-0.1-48/site-library/:/gnu/store/iavhdd5ijp8hb98l9yv1gnrq5jdl4mmv-r-tm-0.7-8/site-library/:/gnu/store/l4ky07zzkb00z7w7r9lcvc99f8mqxs2y-r-xml2-1.3.2/site-library/:/gnu/store/xs0hj874x2b5nz52ixg2q82ak6pavb6x-r-rcpp-1.0.6/site-library/:/gnu/store/9sfqp0v6wa8hqcpkc33c5bp74xlfxq8r-r-nlp-0.2-1/site-library/:/gnu/store/4vyjnbsdhx644i3570kiff28q41a1hz0-r-bh-1.75.0-0/site-library/' environment variable `BASH_LOADABLES_PATH' unset environment variable `C_INCLUDE_PATH' set to `/gnu/store/i4d6inc70qlnq75l5iigi7h5l35s8cw6-gsl-2.6/include:/gnu/store/n1jk0w2wa4vpwmixaqn2y3la1l2sizzi-bzip2-1.0.8/include:/gnu/store/7p36raqgk6vn47bflxc9bsclqiib3phi-xz-5.2.4/include:/gnu/store/lpkf3ydcdvxn8gcrzaq9cp3ri05h8qhs-file-5.38/include:/gnu/store/9iwlsj7d6ffqhshy8qshf7p4fqwfwrvn-gawk-5.0.1/include:/gnu/store/b7jbh7kzzig0bxfswdj8nfj9bkljyyya-make-4.3/include:/gnu/store/50lyzn9bz6x4da66648kry29wn8afird-binutils-2.34/include:/gnu/store/afpgzln8860m6yfhxy6i8n9rywbp85cy-gcc-7.5.0/include:/gnu/store/z4li262il798hbl0l1h1k3a5g7r6bffa-glibc-2.31/include:/gnu/store/hk7l42fwxmnrnlhyiixvaqf1i1crcckp-linux-libre-headers-5.4.20/include' environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/i4d6inc70qlnq75l5iigi7h5l35s8cw6-gsl-2.6/include:/gnu/store/n1jk0w2wa4vpwmixaqn2y3la1l2sizzi-bzip2-1.0.8/include:/gnu/store/7p36raqgk6vn47bflxc9bsclqiib3phi-xz-5.2.4/include:/gnu/store/lpkf3ydcdvxn8gcrzaq9cp3ri05h8qhs-file-5.38/include:/gnu/store/9iwlsj7d6ffqhshy8qshf7p4fqwfwrvn-gawk-5.0.1/include:/gnu/store/b7jbh7kzzig0bxfswdj8nfj9bkljyyya-make-4.3/include:/gnu/store/50lyzn9bz6x4da66648kry29wn8afird-binutils-2.34/include:/gnu/store/afpgzln8860m6yfhxy6i8n9rywbp85cy-gcc-7.5.0/include/c++:/gnu/store/afpgzln8860m6yfhxy6i8n9rywbp85cy-gcc-7.5.0/include:/gnu/store/z4li262il798hbl0l1h1k3a5g7r6bffa-glibc-2.31/include:/gnu/store/hk7l42fwxmnrnlhyiixvaqf1i1crcckp-linux-libre-headers-5.4.20/include' environment variable `LIBRARY_PATH' set to `/gnu/store/7nxvcm0jk30ipzbbw3k7rbljymmsqpkp-r-minimal-4.0.4/lib:/gnu/store/i4d6inc70qlnq75l5iigi7h5l35s8cw6-gsl-2.6/lib:/gnu/store/n1jk0w2wa4vpwmixaqn2y3la1l2sizzi-bzip2-1.0.8/lib:/gnu/store/7p36raqgk6vn47bflxc9bsclqiib3phi-xz-5.2.4/lib:/gnu/store/lpkf3ydcdvxn8gcrzaq9cp3ri05h8qhs-file-5.38/lib:/gnu/store/9iwlsj7d6ffqhshy8qshf7p4fqwfwrvn-gawk-5.0.1/lib:/gnu/store/50lyzn9bz6x4da66648kry29wn8afird-binutils-2.34/lib:/gnu/store/z4li262il798hbl0l1h1k3a5g7r6bffa-glibc-2.31/lib:/gnu/store/rzk3v28mhi4m7sh0qippp9a5rzy03rkg-glibc-2.31-static/lib:/gnu/store/x6i3vfg4gaqd42cqb6mzk52v4lds1467-glibc-utf8-locales-2.31/lib' environment variable `GUIX_LOCPATH' set to `/gnu/store/x6i3vfg4gaqd42cqb6mzk52v4lds1467-glibc-utf8-locales-2.31/lib/locale' phase `set-paths' succeeded after 0.2 seconds starting phase `install-locale' using 'en_US.utf8' locale for category "LC_ALL" phase `install-locale' succeeded after 0.0 seconds starting phase `unpack' topicmodels/ topicmodels/NAMESPACE topicmodels/data/ topicmodels/data/AssociatedPress.rda topicmodels/man/ topicmodels/man/ldaformat2dtm.Rd topicmodels/man/distHellinger.Rd topicmodels/man/tm-class.Rd topicmodels/man/ctm.Rd topicmodels/man/logLik-methods.Rd topicmodels/man/posterior-methods.Rd topicmodels/man/associatedpress.Rd topicmodels/man/perplexity.Rd topicmodels/man/get.Rd topicmodels/man/tmcontrol-class.Rd topicmodels/man/lda.Rd topicmodels/man/build_graph.Rd topicmodels/DESCRIPTION topicmodels/build/ topicmodels/build/vignette.rds topicmodels/src/ topicmodels/src/rlda.h topicmodels/src/constants.h topicmodels/src/gsl-wrappers.h topicmodels/src/rGibbslda.cpp topicmodels/src/ctm.c topicmodels/src/lda-inference.h topicmodels/src/lda-alpha.c topicmodels/src/init.c topicmodels/src/rctm.h topicmodels/src/utils.c topicmodels/src/utilities.cpp topicmodels/src/inference.c topicmodels/src/utils.h topicmodels/src/dataset.cpp topicmodels/src/cokus.h topicmodels/src/lda.h topicmodels/src/lda-model.c topicmodels/src/model.h topicmodels/src/Makevars topicmodels/src/common.c topicmodels/src/ctm.h topicmodels/src/Makevars.win topicmodels/src/lda-model.h topicmodels/src/rctm.c topicmodels/src/cokus.c topicmodels/src/model.cpp topicmodels/src/lda-alpha.h topicmodels/src/utilities.h topicmodels/src/dataset.h topicmodels/src/gsl-wrappers.c topicmodels/src/rlda.c topicmodels/src/common.h topicmodels/src/inference.h topicmodels/src/lda-inference.c topicmodels/vignettes/ topicmodels/vignettes/topicmodels.bib topicmodels/vignettes/topicmodels.Rnw topicmodels/R/ topicmodels/R/utils.R topicmodels/R/build_graph.R topicmodels/R/lda.R topicmodels/R/control.R topicmodels/R/allclasses.R topicmodels/R/ctm.R topicmodels/MD5 topicmodels/inst/ topicmodels/inst/doc/ topicmodels/inst/doc/topicmodels.pdf topicmodels/inst/doc/topicmodels.Rnw topicmodels/inst/doc/topicmodels.R topicmodels/inst/CITATION topicmodels/inst/NEWS.Rd phase `unpack' succeeded after 0.0 seconds starting phase `patch-usr-bin-file' phase `patch-usr-bin-file' succeeded after 0.0 seconds starting phase `patch-source-shebangs' phase `patch-source-shebangs' succeeded after 0.0 seconds starting phase `patch-generated-file-shebangs' phase `patch-generated-file-shebangs' succeeded after 0.0 seconds starting phase `install' * installing *source* package ‘topicmodels’ ... ** package ‘topicmodels’ successfully unpacked and MD5 sums checked ** using staged installation ** libs gcc -I"/gnu/store/7nxvcm0jk30ipzbbw3k7rbljymmsqpkp-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cokus.c -o cokus.o gcc -I"/gnu/store/7nxvcm0jk30ipzbbw3k7rbljymmsqpkp-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c common.c -o common.o gcc -I"/gnu/store/7nxvcm0jk30ipzbbw3k7rbljymmsqpkp-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ctm.c -o ctm.o g++ -std=gnu++11 -I"/gnu/store/7nxvcm0jk30ipzbbw3k7rbljymmsqpkp-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dataset.cpp -o dataset.o gcc -I"/gnu/store/7nxvcm0jk30ipzbbw3k7rbljymmsqpkp-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c gsl-wrappers.c -o gsl-wrappers.o gcc -I"/gnu/store/7nxvcm0jk30ipzbbw3k7rbljymmsqpkp-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c inference.c -o inference.o gcc -I"/gnu/store/7nxvcm0jk30ipzbbw3k7rbljymmsqpkp-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I"/gnu/store/7nxvcm0jk30ipzbbw3k7rbljymmsqpkp-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c lda-alpha.c -o lda-alpha.o gcc -I"/gnu/store/7nxvcm0jk30ipzbbw3k7rbljymmsqpkp-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c lda-inference.c -o lda-inference.o gcc -I"/gnu/store/7nxvcm0jk30ipzbbw3k7rbljymmsqpkp-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c lda-model.c -o lda-model.o g++ -std=gnu++11 -I"/gnu/store/7nxvcm0jk30ipzbbw3k7rbljymmsqpkp-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c model.cpp -o model.o g++ -std=gnu++11 -I"/gnu/store/7nxvcm0jk30ipzbbw3k7rbljymmsqpkp-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rGibbslda.cpp -o rGibbslda.o gcc -I"/gnu/store/7nxvcm0jk30ipzbbw3k7rbljymmsqpkp-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rctm.c -o rctm.o gcc -I"/gnu/store/7nxvcm0jk30ipzbbw3k7rbljymmsqpkp-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rlda.c -o rlda.o g++ -std=gnu++11 -I"/gnu/store/7nxvcm0jk30ipzbbw3k7rbljymmsqpkp-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utilities.cpp -o utilities.o gcc -I"/gnu/store/7nxvcm0jk30ipzbbw3k7rbljymmsqpkp-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o g++ -std=gnu++11 -shared -L/gnu/store/7nxvcm0jk30ipzbbw3k7rbljymmsqpkp-r-minimal-4.0.4/lib/R/lib -L/usr/local/lib -o topicmodels.so cokus.o common.o ctm.o dataset.o gsl-wrappers.o inference.o init.o lda-alpha.o lda-inference.o lda-model.o model.o rGibbslda.o rctm.o rlda.o utilities.o utils.o -lgsl -lgslcblas -L/gnu/store/7nxvcm0jk30ipzbbw3k7rbljymmsqpkp-r-minimal-4.0.4/lib/R/lib -lR installing to /gnu/store/2yalgmvl86cyh1nifqkdk3094plwykqz-r-topicmodels-0.2-12/site-library/00LOCK-topicmodels/00new/topicmodels/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (topicmodels) phase `install' succeeded after 15.4 seconds starting phase `check' phase `check' succeeded after 0.0 seconds starting phase `patch-shebangs' phase `patch-shebangs' succeeded after 0.0 seconds starting phase `strip' phase `strip' succeeded after 0.0 seconds starting phase `validate-runpath' phase `validate-runpath' succeeded after 0.0 seconds starting phase `validate-documentation-location' phase `validate-documentation-location' succeeded after 0.0 seconds starting phase `delete-info-dir-file' phase `delete-info-dir-file' succeeded after 0.0 seconds starting phase `patch-dot-desktop-files' phase `patch-dot-desktop-files' succeeded after 0.0 seconds starting phase `install-license-files' installing 0 license files from '.' phase `install-license-files' succeeded after 0.0 seconds starting phase `reset-gzip-timestamps' phase `reset-gzip-timestamps' succeeded after 0.0 seconds starting phase `compress-documentation' phase `compress-documentation' succeeded after 0.0 seconds