starting phase `set-SOURCE-DATE-EPOCH' phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds starting phase `set-paths' environment variable `PATH' set to `/gnu/store/bhdixzi1c7x4jyh93zx5aqgwzzw3i182-r-minimal-4.0.4/bin:/gnu/store/rfm558jgb7334zlgywc82fs1jqslql52-gfortran-7.5.0/bin:/gnu/store/v6f44zccwh9z5zk3pjlywjybbi8n2hjh-tar-1.32/bin:/gnu/store/ncydgq2znms5n1d2k5yqshhf58nsixwv-gzip-1.10/bin:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/bin:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/bin:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/bin:/gnu/store/n4n560pfvvw50a9369axw5vj5rrqfj1n-diffutils-3.7/bin:/gnu/store/cd5qf3kcnlq35p9k392pjdpdzpsnds70-patch-2.7.6/bin:/gnu/store/hic7snhayfl7m6cpfqqr73nmm19bpqkg-findutils-4.7.0/bin:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/bin:/gnu/store/ishk7fswcs4gkwcp8mh788z4mvvl9bxh-sed-4.8/bin:/gnu/store/bhs4rj58v8j1narb2454raan2ps38xd8-grep-3.4/bin:/gnu/store/57xj5gcy1jbl9ai2lnrqnpr0dald9i65-coreutils-8.32/bin:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/bin:/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin:/gnu/store/mpa04aq8lblbcviyxywxcsb1zbi0mf39-ld-wrapper-0/bin:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/bin:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/bin:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/sbin' environment variable `R_LIBS_SITE' unset environment variable `CPATH' set to `/gnu/store/rfm558jgb7334zlgywc82fs1jqslql52-gfortran-7.5.0/include:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/include:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/include:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/include:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/include:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/include:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/include:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/include:/gnu/store/gfapkk5c6hvl1d94m4sqnhn7f9l5gqyh-linux-libre-headers-5.4.20/include' environment variable `LIBRARY_PATH' set to `/gnu/store/bhdixzi1c7x4jyh93zx5aqgwzzw3i182-r-minimal-4.0.4/lib:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/lib:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/lib:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/lib:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/lib:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/lib:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/lib:/gnu/store/s3dcqzwqaakv1yx37by9chksdbkgih17-glibc-2.31-static/lib:/gnu/store/hwcky7446s952w0mwchhmm211ll07zrq-glibc-utf8-locales-2.31/lib' environment variable `BASH_LOADABLES_PATH' unset environment variable `C_INCLUDE_PATH' set to `/gnu/store/rfm558jgb7334zlgywc82fs1jqslql52-gfortran-7.5.0/include:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/include:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/include:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/include:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/include:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/include:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/include:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/include:/gnu/store/gfapkk5c6hvl1d94m4sqnhn7f9l5gqyh-linux-libre-headers-5.4.20/include' environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/rfm558jgb7334zlgywc82fs1jqslql52-gfortran-7.5.0/include/c++:/gnu/store/rfm558jgb7334zlgywc82fs1jqslql52-gfortran-7.5.0/include:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/include:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/include:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/include:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/include:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/include:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/include:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include/c++:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/include:/gnu/store/gfapkk5c6hvl1d94m4sqnhn7f9l5gqyh-linux-libre-headers-5.4.20/include' environment variable `GUIX_LOCPATH' set to `/gnu/store/hwcky7446s952w0mwchhmm211ll07zrq-glibc-utf8-locales-2.31/lib/locale' phase `set-paths' succeeded after 0.0 seconds starting phase `install-locale' using 'en_US.utf8' locale for category "LC_ALL" phase `install-locale' succeeded after 0.0 seconds starting phase `unpack' iClusterPlus/DESCRIPTION iClusterPlus/NAMESPACE iClusterPlus/R/ iClusterPlus/R/CNregions.R iClusterPlus/R/compute.pod.R iClusterPlus/R/iCluster.R iClusterPlus/R/iCluster2.R iClusterPlus/R/iClusterBayes.R iClusterPlus/R/iClusterPlus.R iClusterPlus/R/plotHeatmap.R iClusterPlus/R/plotRI.R iClusterPlus/R/plotiCluster.R iClusterPlus/R/tune.iCluster2.R iClusterPlus/R/tune.iClusterPlus.R iClusterPlus/R/utility.R iClusterPlus/build/ iClusterPlus/build/vignette.rds iClusterPlus/cleanup iClusterPlus/configure iClusterPlus/configure.in iClusterPlus/data/ iClusterPlus/data/breast.chr17.rda iClusterPlus/data/coord.rda iClusterPlus/data/datalist iClusterPlus/data/gbm.rda iClusterPlus/data/glp.rda iClusterPlus/data/simuResult.rda iClusterPlus/data/variation.hg18.v10.nov.2010.rda iClusterPlus/demo/ iClusterPlus/demo/00Index iClusterPlus/demo/demo.R iClusterPlus/demo/iCluster.demo.R iClusterPlus/inst/ iClusterPlus/inst/NEWS iClusterPlus/inst/doc/ iClusterPlus/inst/doc/iClusterPlus.Rnw iClusterPlus/inst/doc/iClusterPlus.pdf iClusterPlus/inst/doc/iManual.pdf iClusterPlus/inst/unitTests/ iClusterPlus/inst/unitTests/test_iClusterPlus.R iClusterPlus/man/ iClusterPlus/man/CNregions.Rd iClusterPlus/man/breast.chr17.Rd iClusterPlus/man/compute.pod.Rd iClusterPlus/man/coord.Rd iClusterPlus/man/gbm.Rd iClusterPlus/man/glp.Rd iClusterPlus/man/iCluster.Rd iClusterPlus/man/iCluster2.Rd iClusterPlus/man/iClusterBayes.Rd iClusterPlus/man/iClusterPlus.Rd iClusterPlus/man/plotHMBayes.Rd iClusterPlus/man/plotHeatmap.Rd iClusterPlus/man/plotRI.Rd iClusterPlus/man/plotiCluster.Rd iClusterPlus/man/simuResult.Rd iClusterPlus/man/tune.iCluster2.Rd iClusterPlus/man/tune.iClusterBayes.Rd iClusterPlus/man/tune.iClusterPlus.Rd iClusterPlus/man/utility.Rd iClusterPlus/man/variation.hg18.v10.nov.2010.Rd iClusterPlus/src/ iClusterPlus/src/Makevars.in iClusterPlus/src/Makevars.win iClusterPlus/src/iClusterBayes.c iClusterPlus/src/iClusterPlus.c iClusterPlus/src/iClusterPlus.h iClusterPlus/src/newGLMnet.f90 iClusterPlus/tests/ iClusterPlus/tests/runTests.R iClusterPlus/vignettes/ iClusterPlus/vignettes/iClusterPlus.Rnw phase `unpack' succeeded after 0.3 seconds starting phase `patch-usr-bin-file' phase `patch-usr-bin-file' succeeded after 0.0 seconds starting phase `patch-source-shebangs' patch-shebang: ./cleanup: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash' patch-shebang: ./configure: changing `/bin/sh' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/sh' phase `patch-source-shebangs' succeeded after 0.0 seconds starting phase `patch-generated-file-shebangs' phase `patch-generated-file-shebangs' succeeded after 0.0 seconds starting phase `install' * installing *source* package ‘iClusterPlus’ ... ** using staged installation This package has only been tested with gfortran. So some checks are needed. R_HOME is /gnu/store/bhdixzi1c7x4jyh93zx5aqgwzzw3i182-r-minimal-4.0.4/lib/R Attempting to determine R_ARCH... R_ARCH is Attempting to detect how R was configured for Fortran 90.... R configured for gfortran; Good! configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -I"/gnu/store/bhdixzi1c7x4jyh93zx5aqgwzzw3i182-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c iClusterBayes.c -o iClusterBayes.o gcc -I"/gnu/store/bhdixzi1c7x4jyh93zx5aqgwzzw3i182-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c iClusterPlus.c -o iClusterPlus.o gfortran -fno-optimize-sibling-calls -fdefault-real-8 -ffixed-form -fpic -g -O2 -c newGLMnet.f90 -o newGLMnet.o gcc -shared -L/gnu/store/bhdixzi1c7x4jyh93zx5aqgwzzw3i182-r-minimal-4.0.4/lib/R/lib -L/usr/local/lib -o iClusterPlus.so iClusterBayes.o iClusterPlus.o newGLMnet.o -L/gnu/store/bhdixzi1c7x4jyh93zx5aqgwzzw3i182-r-minimal-4.0.4/lib/R/lib -lRlapack -L/gnu/store/bhdixzi1c7x4jyh93zx5aqgwzzw3i182-r-minimal-4.0.4/lib/R/lib -lRblas -L/gnu/store/741057r2x06zwg6zcmqmdyv51spm6n9i-gfortran-7.5.0-lib/lib/gcc/x86_64-unknown-linux-gnu/7.5.0 -L/gnu/store/741057r2x06zwg6zcmqmdyv51spm6n9i-gfortran-7.5.0-lib/lib -lgfortran -lm -lquadmath -L/gnu/store/741057r2x06zwg6zcmqmdyv51spm6n9i-gfortran-7.5.0-lib/lib/gcc/x86_64-unknown-linux-gnu/7.5.0 -L/gnu/store/741057r2x06zwg6zcmqmdyv51spm6n9i-gfortran-7.5.0-lib/lib -lgfortran -lm -lquadmath -L/gnu/store/bhdixzi1c7x4jyh93zx5aqgwzzw3i182-r-minimal-4.0.4/lib/R/lib -lR installing to /gnu/store/ylj0yqk9zvh8ch2n1vjnzigm4qwr1p07-r-iclusterplus-1.26.0/site-library/00LOCK-iClusterPlus/00new/iClusterPlus/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** tests ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (iClusterPlus) phase `install' succeeded after 21.4 seconds starting phase `check' Testing examples for package ‘iClusterPlus’ Running specific tests for package ‘iClusterPlus’ Running ‘runTests.R’ phase `check' succeeded after 29.5 seconds starting phase `patch-shebangs' phase `patch-shebangs' succeeded after 0.0 seconds starting phase `strip' phase `strip' succeeded after 0.0 seconds starting phase `validate-runpath' phase `validate-runpath' succeeded after 0.0 seconds starting phase `validate-documentation-location' phase `validate-documentation-location' succeeded after 0.0 seconds starting phase `delete-info-dir-file' phase `delete-info-dir-file' succeeded after 0.0 seconds starting phase `patch-dot-desktop-files' phase `patch-dot-desktop-files' succeeded after 0.0 seconds starting phase `install-license-files' installing 0 license files from '.' phase `install-license-files' succeeded after 0.0 seconds starting phase `reset-gzip-timestamps' phase `reset-gzip-timestamps' succeeded after 0.0 seconds starting phase `compress-documentation' phase `compress-documentation' succeeded after 0.0 seconds