starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/3282r97il61j9jkv2aaifa3nwdylzfsv-python-wrapper-3.9.6/bin:/gnu/store/ky98rln3i4f1qaxyv8fm0jfx93fpkyz6-openmpi-4.1.1/bin:/gnu/store/wgsmkn68q8h178sqc7ywjcdr330z9rb6-python-numpy-1.20.3/bin:/gnu/store/ikc2qn1h260f8mdhjz2cwndv2i7n753z-tar-1.34/bin:/gnu/store/v5l2251ck0r4n3w2rjw3l5dzyqsb9zj1-gzip-1.10/bin:/gnu/store/w6zv2mz56wyxr471q38a3cmzm4iqimy8-bzip2-1.0.8/bin:/gnu/store/72kpdqplq4nc87fm7ch47kxy3nlkzsyx-xz-5.2.5/bin:/gnu/store/jazwfsj2v41yih2yzw5nydqgdz1hgfm4-file-5.39/bin:/gnu/store/s49sxmz9g4xmzz222cay9k04ziy3qgmj-diffutils-3.8/bin:/gnu/store/m96snvbl92ivkd32giqh5f3d21bc2n5x-patch-2.7.6/bin:/gnu/store/l8l2y2dlya5rs9hfypmcb4saay7iwn0q-findutils-4.8.0/bin:/gnu/store/v45pjc1yqmy59j9ff913p3ywn9qk4lqx-gawk-5.1.0/bin:/gnu/store/7cddr79rydhc1m4hxr921mq17pz1jj3z-sed-4.8/bin:/gnu/store/ldkm5jwql0qsrfh3ax6rljjsrk0jzv7z-grep-3.6/bin:/gnu/store/25gv43v5rm05i26z39ajrd6nsxa5r461-coreutils-8.32/bin:/gnu/store/l8kxrs01lll3pzjrd590p45l8k045q6q-make-4.3/bin:/gnu/store/vx6vfbmmazvfi7vp8xyjn2mcyylvw9gn-bash-minimal-5.1.8/bin:/gnu/store/k452f0r5bk6n0cbsf5ndxbp5qcf6bpfw-ld-wrapper-0/bin:/gnu/store/6mqcv52gwn2dnbislgv9k99525mzmrrs-binutils-2.37/bin:/gnu/store/vakvgvrb839igv16jkif4lmx11d25jqb-gcc-10.3.0/bin:/gnu/store/2fk1gz2s7ppdicynscra9b19byrrr866-glibc-2.33/bin:/gnu/store/2fk1gz2s7ppdicynscra9b19byrrr866-glibc-2.33/sbin:/gnu/store/p5fgysbcnnp8b1d91mrvjvababmczga0-python-3.9.6/bin:/gnu/store/bcqhqpvvqdi5j6s16mjy30hm6y5f7r2y-python-pytest-6.2.5/bin:/gnu/store/m9y41xzssgy6z774cxng1k8rqv2f2v1n-python-coverage-5.2.1/bin'
environment variable `GUIX_PYTHONPATH' set to `/gnu/store/zxfpxzl33rzdx914yn1lhqvzxbwzf815-python-pytest-cov-2.8.1/lib/python3.9/site-packages:/gnu/store/wgsmkn68q8h178sqc7ywjcdr330z9rb6-python-numpy-1.20.3/lib/python3.9/site-packages:/gnu/store/2x9wsnrkqgmll66jywfb2wym4rjk5w4f-python-mpi4py-3.0.3/lib/python3.9/site-packages:/gnu/store/p5fgysbcnnp8b1d91mrvjvababmczga0-python-3.9.6/lib/python3.9/site-packages:/gnu/store/bcqhqpvvqdi5j6s16mjy30hm6y5f7r2y-python-pytest-6.2.5/lib/python3.9/site-packages:/gnu/store/m9y41xzssgy6z774cxng1k8rqv2f2v1n-python-coverage-5.2.1/lib/python3.9/site-packages:/gnu/store/cwqyn4vw8wfb4svia16ca5wm7lfqms03-python-wcwidth-0.1.8/lib/python3.9/site-packages:/gnu/store/i50rn8ylplg5naarv4a8p5wm5gx2qgzy-python-toml-0.10.2/lib/python3.9/site-packages:/gnu/store/rlhb3kdmazq0v5q4m3vgrs721sldsrgv-python-six-bootstrap-1.16.0/lib/python3.9/site-packages:/gnu/store/2vmfdgjvq0ayvyh3sl5sbj5gir2nbiwd-python-py-1.10.0/lib/python3.9/site-packages:/gnu/store/40qlnlndg7s4sif17v1rxc8zx4myv1fk-python-pluggy-0.13.1/lib/python3.9/site-packages:/gnu/store/fzpmydhqiqn7m3zg45n09vcb5aw8b7wg-python-packaging-bootstrap-20.0/lib/python3.9/site-packages:/gnu/store/gg9jdx8glzdm204dqd3wxnh7m5g18bk2-python-more-itertools-8.2.0/lib/python3.9/site-packages:/gnu/store/a7xfsa16561f16bmpgddjrjd83kixnz8-python-iniconfig-1.1.1/lib/python3.9/site-packages:/gnu/store/ay6ds6kpcgkah8waz5zjmc1sgdp93s9p-python-attrs-bootstrap-21.2.0/lib/python3.9/site-packages:/gnu/store/ac23iqjrx01spksk218aq9rgb2xsvvpl-python-pyparsing-2.4.7/lib/python3.9/site-packages'
environment variable `PYTHONTZPATH' unset
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/ky98rln3i4f1qaxyv8fm0jfx93fpkyz6-openmpi-4.1.1/include:/gnu/store/w6zv2mz56wyxr471q38a3cmzm4iqimy8-bzip2-1.0.8/include:/gnu/store/72kpdqplq4nc87fm7ch47kxy3nlkzsyx-xz-5.2.5/include:/gnu/store/jazwfsj2v41yih2yzw5nydqgdz1hgfm4-file-5.39/include:/gnu/store/v45pjc1yqmy59j9ff913p3ywn9qk4lqx-gawk-5.1.0/include:/gnu/store/l8kxrs01lll3pzjrd590p45l8k045q6q-make-4.3/include:/gnu/store/6mqcv52gwn2dnbislgv9k99525mzmrrs-binutils-2.37/include:/gnu/store/vakvgvrb839igv16jkif4lmx11d25jqb-gcc-10.3.0/include:/gnu/store/2fk1gz2s7ppdicynscra9b19byrrr866-glibc-2.33/include:/gnu/store/p5fgysbcnnp8b1d91mrvjvababmczga0-python-3.9.6/include:/gnu/store/99a2njzz22dkzd8pz75fsi5nbgv9ww0x-linux-libre-headers-5.10.35/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/ky98rln3i4f1qaxyv8fm0jfx93fpkyz6-openmpi-4.1.1/include:/gnu/store/w6zv2mz56wyxr471q38a3cmzm4iqimy8-bzip2-1.0.8/include:/gnu/store/72kpdqplq4nc87fm7ch47kxy3nlkzsyx-xz-5.2.5/include:/gnu/store/jazwfsj2v41yih2yzw5nydqgdz1hgfm4-file-5.39/include:/gnu/store/v45pjc1yqmy59j9ff913p3ywn9qk4lqx-gawk-5.1.0/include:/gnu/store/l8kxrs01lll3pzjrd590p45l8k045q6q-make-4.3/include:/gnu/store/6mqcv52gwn2dnbislgv9k99525mzmrrs-binutils-2.37/include:/gnu/store/vakvgvrb839igv16jkif4lmx11d25jqb-gcc-10.3.0/include/c++:/gnu/store/vakvgvrb839igv16jkif4lmx11d25jqb-gcc-10.3.0/include:/gnu/store/2fk1gz2s7ppdicynscra9b19byrrr866-glibc-2.33/include:/gnu/store/p5fgysbcnnp8b1d91mrvjvababmczga0-python-3.9.6/include:/gnu/store/99a2njzz22dkzd8pz75fsi5nbgv9ww0x-linux-libre-headers-5.10.35/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/zxfpxzl33rzdx914yn1lhqvzxbwzf815-python-pytest-cov-2.8.1/lib:/gnu/store/ky98rln3i4f1qaxyv8fm0jfx93fpkyz6-openmpi-4.1.1/lib:/gnu/store/wgsmkn68q8h178sqc7ywjcdr330z9rb6-python-numpy-1.20.3/lib:/gnu/store/2x9wsnrkqgmll66jywfb2wym4rjk5w4f-python-mpi4py-3.0.3/lib:/gnu/store/w6zv2mz56wyxr471q38a3cmzm4iqimy8-bzip2-1.0.8/lib:/gnu/store/72kpdqplq4nc87fm7ch47kxy3nlkzsyx-xz-5.2.5/lib:/gnu/store/jazwfsj2v41yih2yzw5nydqgdz1hgfm4-file-5.39/lib:/gnu/store/v45pjc1yqmy59j9ff913p3ywn9qk4lqx-gawk-5.1.0/lib:/gnu/store/6mqcv52gwn2dnbislgv9k99525mzmrrs-binutils-2.37/lib:/gnu/store/2fk1gz2s7ppdicynscra9b19byrrr866-glibc-2.33/lib:/gnu/store/3ywv7s8d38rgcq7ljmc1s084358a2m3h-glibc-2.33-static/lib:/gnu/store/0brdikxqk59hdr47qabcm3sya001d8vf-glibc-utf8-locales-2.33/lib:/gnu/store/p5fgysbcnnp8b1d91mrvjvababmczga0-python-3.9.6/lib:/gnu/store/bcqhqpvvqdi5j6s16mjy30hm6y5f7r2y-python-pytest-6.2.5/lib:/gnu/store/m9y41xzssgy6z774cxng1k8rqv2f2v1n-python-coverage-5.2.1/lib:/gnu/store/cwqyn4vw8wfb4svia16ca5wm7lfqms03-python-wcwidth-0.1.8/lib:/gnu/store/i50rn8ylplg5naarv4a8p5wm5gx2qgzy-python-toml-0.10.2/lib:/gnu/store/rlhb3kdmazq0v5q4m3vgrs721sldsrgv-python-six-bootstrap-1.16.0/lib:/gnu/store/2vmfdgjvq0ayvyh3sl5sbj5gir2nbiwd-python-py-1.10.0/lib:/gnu/store/40qlnlndg7s4sif17v1rxc8zx4myv1fk-python-pluggy-0.13.1/lib:/gnu/store/fzpmydhqiqn7m3zg45n09vcb5aw8b7wg-python-packaging-bootstrap-20.0/lib:/gnu/store/gg9jdx8glzdm204dqd3wxnh7m5g18bk2-python-more-itertools-8.2.0/lib:/gnu/store/a7xfsa16561f16bmpgddjrjd83kixnz8-python-iniconfig-1.1.1/lib:/gnu/store/ay6ds6kpcgkah8waz5zjmc1sgdp93s9p-python-attrs-bootstrap-21.2.0/lib:/gnu/store/ac23iqjrx01spksk218aq9rgb2xsvvpl-python-pyparsing-2.4.7/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/0brdikxqk59hdr47qabcm3sya001d8vf-glibc-utf8-locales-2.33/lib/locale'
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'en_US.utf8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
fenics-dijitso-2019.1.0/
fenics-dijitso-2019.1.0/COPYING
fenics-dijitso-2019.1.0/COPYING.LESSER
fenics-dijitso-2019.1.0/MANIFEST.in
fenics-dijitso-2019.1.0/PKG-INFO
fenics-dijitso-2019.1.0/README.rst
fenics-dijitso-2019.1.0/dijitso/
fenics-dijitso-2019.1.0/dijitso/__init__.py
fenics-dijitso-2019.1.0/dijitso/__main__.py
fenics-dijitso-2019.1.0/dijitso/build.py
fenics-dijitso-2019.1.0/dijitso/cache.py
fenics-dijitso-2019.1.0/dijitso/cmdline.py
fenics-dijitso-2019.1.0/dijitso/jit.py
fenics-dijitso-2019.1.0/dijitso/log.py
fenics-dijitso-2019.1.0/dijitso/mpi.py
fenics-dijitso-2019.1.0/dijitso/params.py
fenics-dijitso-2019.1.0/dijitso/signatures.py
fenics-dijitso-2019.1.0/dijitso/str.py
fenics-dijitso-2019.1.0/dijitso/system.py
fenics-dijitso-2019.1.0/doc/
fenics-dijitso-2019.1.0/doc/man/
fenics-dijitso-2019.1.0/doc/man/man1/
fenics-dijitso-2019.1.0/doc/man/man1/dijitso.1.gz
fenics-dijitso-2019.1.0/doc/sphinx/
fenics-dijitso-2019.1.0/doc/sphinx/Makefile
fenics-dijitso-2019.1.0/doc/sphinx/README
fenics-dijitso-2019.1.0/doc/sphinx/requirements.txt
fenics-dijitso-2019.1.0/doc/sphinx/source/
fenics-dijitso-2019.1.0/doc/sphinx/source/conf.py
fenics-dijitso-2019.1.0/doc/sphinx/source/index.rst
fenics-dijitso-2019.1.0/doc/sphinx/source/installation.rst
fenics-dijitso-2019.1.0/doc/sphinx/source/manual.rst
fenics-dijitso-2019.1.0/doc/sphinx/source/releases/
fenics-dijitso-2019.1.0/doc/sphinx/source/releases/next.rst
fenics-dijitso-2019.1.0/doc/sphinx/source/releases/v2016.1.0.rst
fenics-dijitso-2019.1.0/doc/sphinx/source/releases/v2016.2.0.rst
fenics-dijitso-2019.1.0/doc/sphinx/source/releases/v2017.1.0.post1.rst
fenics-dijitso-2019.1.0/doc/sphinx/source/releases/v2017.1.0.rst
fenics-dijitso-2019.1.0/doc/sphinx/source/releases/v2017.2.0.rst
fenics-dijitso-2019.1.0/doc/sphinx/source/releases/v2018.1.0.rst
fenics-dijitso-2019.1.0/doc/sphinx/source/releases/v2019.1.0.rst
fenics-dijitso-2019.1.0/doc/sphinx/source/releases.rst
fenics-dijitso-2019.1.0/fenics_dijitso.egg-info/
fenics-dijitso-2019.1.0/fenics_dijitso.egg-info/PKG-INFO
fenics-dijitso-2019.1.0/fenics_dijitso.egg-info/SOURCES.txt
fenics-dijitso-2019.1.0/fenics_dijitso.egg-info/dependency_links.txt
fenics-dijitso-2019.1.0/fenics_dijitso.egg-info/entry_points.txt
fenics-dijitso-2019.1.0/fenics_dijitso.egg-info/requires.txt
fenics-dijitso-2019.1.0/fenics_dijitso.egg-info/top_level.txt
fenics-dijitso-2019.1.0/setup.cfg
fenics-dijitso-2019.1.0/setup.py
fenics-dijitso-2019.1.0/test/
fenics-dijitso-2019.1.0/test/.coveragerc
fenics-dijitso-2019.1.0/test/clean.sh
fenics-dijitso-2019.1.0/test/conftest.py
fenics-dijitso-2019.1.0/test/debug_mpi_tests.sh
fenics-dijitso-2019.1.0/test/mpipipe.sh
fenics-dijitso-2019.1.0/test/mpipytest.sh
fenics-dijitso-2019.1.0/test/pytest.ini
fenics-dijitso-2019.1.0/test/runtests.sh
fenics-dijitso-2019.1.0/test/test_mpi_dijitso.py
fenics-dijitso-2019.1.0/test/test_mpi_dummy.py
fenics-dijitso-2019.1.0/test/test_role_assignment.py
fenics-dijitso-2019.1.0/test/test_serial_dijitso.py
fenics-dijitso-2019.1.0/test/test_system_utils.py
fenics-dijitso-2019.1.0/test/testincludes/
fenics-dijitso-2019.1.0/test/testincludes/testinclude.h
phase `unpack' succeeded after 0.0 seconds
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starting phase `enable-bytecode-determinism'
phase `enable-bytecode-determinism' succeeded after 0.0 seconds
starting phase `ensure-no-cythonized-files'
phase `ensure-no-cythonized-files' succeeded after 0.0 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
patch-shebang: ./test/clean.sh: changing `/bin/bash' to `/gnu/store/vx6vfbmmazvfi7vp8xyjn2mcyylvw9gn-bash-minimal-5.1.8/bin/bash'
patch-shebang: ./test/conftest.py: changing `/usr/bin/env py.test' to `/gnu/store/bcqhqpvvqdi5j6s16mjy30hm6y5f7r2y-python-pytest-6.2.5/bin/py.test'
patch-shebang: ./test/debug_mpi_tests.sh: changing `/usr/bin/env bash' to `/gnu/store/vx6vfbmmazvfi7vp8xyjn2mcyylvw9gn-bash-minimal-5.1.8/bin/bash'
patch-shebang: ./test/mpipipe.sh: changing `/bin/sh' to `/gnu/store/vx6vfbmmazvfi7vp8xyjn2mcyylvw9gn-bash-minimal-5.1.8/bin/sh'
patch-shebang: ./test/mpipytest.sh: changing `/bin/sh' to `/gnu/store/vx6vfbmmazvfi7vp8xyjn2mcyylvw9gn-bash-minimal-5.1.8/bin/sh'
patch-shebang: ./test/runtests.sh: changing `/usr/bin/env bash' to `/gnu/store/vx6vfbmmazvfi7vp8xyjn2mcyylvw9gn-bash-minimal-5.1.8/bin/bash'
phase `patch-source-shebangs' succeeded after 0.1 seconds
starting phase `patch-generated-file-shebangs'
phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `build'
running "python setup.py" with command "build" and parameters ()
running build
running build_py
creating build
creating build/lib
creating build/lib/dijitso
copying dijitso/cmdline.py -> build/lib/dijitso
copying dijitso/str.py -> build/lib/dijitso
copying dijitso/system.py -> build/lib/dijitso
copying dijitso/signatures.py -> build/lib/dijitso
copying dijitso/log.py -> build/lib/dijitso
copying dijitso/mpi.py -> build/lib/dijitso
copying dijitso/__init__.py -> build/lib/dijitso
copying dijitso/build.py -> build/lib/dijitso
copying dijitso/jit.py -> build/lib/dijitso
copying dijitso/__main__.py -> build/lib/dijitso
copying dijitso/params.py -> build/lib/dijitso
copying dijitso/cache.py -> build/lib/dijitso
warning: build_py: byte-compiling is disabled, skipping.

phase `build' succeeded after 0.4 seconds
starting phase `mpi-setup'
phase `mpi-setup' succeeded after 0.0 seconds
starting phase `install'
running "python setup.py" with command "install" and parameters ("--prefix=/gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0" "--no-compile" "--single-version-externally-managed" "--root=/")
running install
running build
running build_py
warning: build_py: byte-compiling is disabled, skipping.

running install_lib
creating /gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0
creating /gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib
creating /gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9
creating /gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages
creating /gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/dijitso
copying build/lib/dijitso/cmdline.py -> /gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/dijitso
copying build/lib/dijitso/str.py -> /gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/dijitso
copying build/lib/dijitso/system.py -> /gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/dijitso
copying build/lib/dijitso/signatures.py -> /gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/dijitso
copying build/lib/dijitso/log.py -> /gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/dijitso
copying build/lib/dijitso/mpi.py -> /gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/dijitso
copying build/lib/dijitso/__init__.py -> /gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/dijitso
copying build/lib/dijitso/build.py -> /gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/dijitso
copying build/lib/dijitso/jit.py -> /gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/dijitso
copying build/lib/dijitso/__main__.py -> /gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/dijitso
copying build/lib/dijitso/params.py -> /gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/dijitso
copying build/lib/dijitso/cache.py -> /gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/dijitso
warning: install_lib: byte-compiling is disabled, skipping.

running install_data
creating /gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/share
creating /gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/share/man
creating /gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/share/man/man1
copying doc/man/man1/dijitso.1.gz -> /gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/share/man/man1
running install_egg_info
running egg_info
writing fenics_dijitso.egg-info/PKG-INFO
writing dependency_links to fenics_dijitso.egg-info/dependency_links.txt
writing entry points to fenics_dijitso.egg-info/entry_points.txt
writing requirements to fenics_dijitso.egg-info/requires.txt
writing top-level names to fenics_dijitso.egg-info/top_level.txt
adding license file 'COPYING' (matched pattern 'COPYING*')
adding license file 'COPYING.LESSER' (matched pattern 'COPYING*')
reading manifest file 'fenics_dijitso.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'ChangeLog'
warning: no previously-included files matching '__pycache__' found anywhere in distribution
warning: no previously-included files matching '*.pyc' found anywhere in distribution
writing manifest file 'fenics_dijitso.egg-info/SOURCES.txt'
Copying fenics_dijitso.egg-info to /gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/fenics_dijitso-2019.1.0-py3.9.egg-info
running install_scripts
Installing dijitso script to /gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/bin
Listing '/gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0'...
Listing '/gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/bin'...
Listing '/gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib'...
Listing '/gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9'...
Listing '/gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages'...
Listing '/gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/dijitso'...
Compiling '/gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/dijitso/__init__.py'...
Compiling '/gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/dijitso/__main__.py'...
Compiling '/gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/dijitso/build.py'...
Compiling '/gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/dijitso/cache.py'...
Compiling '/gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/dijitso/cmdline.py'...
Compiling '/gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/dijitso/jit.py'...
Compiling '/gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/dijitso/log.py'...
Compiling '/gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/dijitso/mpi.py'...
Compiling '/gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/dijitso/params.py'...
Compiling '/gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/dijitso/signatures.py'...
Compiling '/gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/dijitso/str.py'...
Compiling '/gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/dijitso/system.py'...
Listing '/gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages/fenics_dijitso-2019.1.0-py3.9.egg-info'...
Listing '/gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/share'...
Listing '/gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/share/man'...
Listing '/gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/share/man/man1'...
phase `install' succeeded after 0.7 seconds
starting phase `add-install-to-pythonpath'
phase `add-install-to-pythonpath' succeeded after 0.0 seconds
starting phase `add-install-to-path'
phase `add-install-to-path' succeeded after 0.0 seconds
starting phase `wrap'
find-files: /gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/sbin: No such file or directory
phase `wrap' succeeded after 0.0 seconds
starting phase `check'
Running tests in serial:
============================= test session starts ==============================
platform linux -- Python 3.9.6, pytest-6.2.5, py-1.10.0, pluggy-0.13.1 -- /gnu/store/3282r97il61j9jkv2aaifa3nwdylzfsv-python-wrapper-3.9.6/bin/python
cachedir: .pytest_cache
rootdir: /tmp/guix-build-python-fenics-dijitso-2019.1.0.drv-0/fenics-dijitso-2019.1.0/test, configfile: pytest.ini
plugins: cov-2.8.1
collecting ... collected 10 items

test_mpi_dijitso.py::test_mpi_jit_strategies[root] rank 0: send size with root=0.
rank 0: send data with root=0.
rank 0: send size with root=0.
rank 0: send data with root=0.
root 0
PASSED
test_mpi_dijitso.py::test_mpi_jit_strategies[node] node 0
PASSED
test_mpi_dijitso.py::test_mpi_jit_strategies[process] process 0
PASSED
test_mpi_dummy.py::test_mpi_dummy PASSED
test_role_assignment.py::test_role_root PASSED
test_role_assignment.py::test_role_node PASSED
test_role_assignment.py::test_role_process PASSED
test_serial_dijitso.py::test_core_jit_framework PASSED
test_system_utils.py::test_get_status_output PASSED
test_system_utils.py::test_lockfree_move_file PASSED

- generated xml file: /tmp/guix-build-python-fenics-dijitso-2019.1.0.drv-0/fenics-dijitso-2019.1.0/test/report.xml -

----------- coverage: platform linux, python 3.9.6-final-0 -----------
Coverage HTML written to dir htmlcov

============================== 10 passed in 2.02s ==============================
Running tests with mpi, n=1
python3 -B -m pytest -svl --cov-report html --cov=dijitso --junitxml report$MYRANK.xml
My rank is 0, writing to output.0
============================= test session starts ==============================
platform linux -- Python 3.9.6, pytest-6.2.5, py-1.10.0, pluggy-0.13.1 -- /gnu/store/p5fgysbcnnp8b1d91mrvjvababmczga0-python-3.9.6/bin/python3
cachedir: .pytest_cache
rootdir: /tmp/guix-build-python-fenics-dijitso-2019.1.0.drv-0/fenics-dijitso-2019.1.0/test, configfile: pytest.ini
plugins: cov-2.8.1
collecting ... collected 10 items

test_mpi_dijitso.py::test_mpi_jit_strategies[root] root 0
PASSED
test_mpi_dijitso.py::test_mpi_jit_strategies[node] node 0
PASSED
test_mpi_dijitso.py::test_mpi_jit_strategies[process] process 0
PASSED
test_mpi_dummy.py::test_mpi_dummy PASSED
test_role_assignment.py::test_role_root PASSED
test_role_assignment.py::test_role_node PASSED
test_role_assignment.py::test_role_process PASSED
test_serial_dijitso.py::test_core_jit_framework PASSED
test_system_utils.py::test_get_status_output PASSED
test_system_utils.py::test_lockfree_move_file PASSED

- generated xml file: /tmp/guix-build-python-fenics-dijitso-2019.1.0.drv-0/fenics-dijitso-2019.1.0/test/report0.xml -

----------- coverage: platform linux, python 3.9.6-final-0 -----------
Coverage HTML written to dir htmlcov10

============================== 10 passed in 1.28s ==============================
phase `check' succeeded after 7.5 seconds
starting phase `sanity-check'
validating 'fenics-dijitso' /gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib/python3.9/site-packages
...checking requirements: OK
...trying to load module dijitso: OK
...trying to load endpoint console_scripts dijitso: OK
phase `sanity-check' succeeded after 0.5 seconds
starting phase `patch-shebangs'
phase `patch-shebangs' succeeded after 0.0 seconds
starting phase `rename-pth-file'
phase `rename-pth-file' succeeded after 0.0 seconds
starting phase `strip'
stripping binaries in "/gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib" with "strip" and flags ("--strip-unneeded" "--enable-deterministic-archives")
stripping binaries in "/gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/bin" with "strip" and flags ("--strip-unneeded" "--enable-deterministic-archives")
phase `strip' succeeded after 0.0 seconds
starting phase `validate-runpath'
validating RUNPATH of 0 binaries in "/gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/lib"...
validating RUNPATH of 0 binaries in "/gnu/store/4rmki96ny01x7slszbp8mhld3pffin5h-python-fenics-dijitso-2019.1.0/bin"...
phase `validate-runpath' succeeded after 0.0 seconds
starting phase `validate-documentation-location'
phase `validate-documentation-location' succeeded after 0.0 seconds
starting phase `delete-info-dir-file'
phase `delete-info-dir-file' succeeded after 0.0 seconds
starting phase `patch-dot-desktop-files'
phase `patch-dot-desktop-files' succeeded after 0.0 seconds
starting phase `make-dynamic-linker-cache'
phase `make-dynamic-linker-cache' succeeded after 0.0 seconds
starting phase `install-license-files'
installing 2 license files from '.'
phase `install-license-files' succeeded after 0.0 seconds
starting phase `reset-gzip-timestamps'
phase `reset-gzip-timestamps' succeeded after 0.0 seconds
starting phase `compress-documentation'
phase `compress-documentation' succeeded after 0.0 seconds