starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/7nxvcm0jk30ipzbbw3k7rbljymmsqpkp-r-minimal-4.0.4/bin:/gnu/store/gww59gv5qxbfijg3vk5y182im7923s06-tar-1.32/bin:/gnu/store/2ayciqwxddkzq183dac82ijljc14j4zj-gzip-1.10/bin:/gnu/store/n1jk0w2wa4vpwmixaqn2y3la1l2sizzi-bzip2-1.0.8/bin:/gnu/store/7p36raqgk6vn47bflxc9bsclqiib3phi-xz-5.2.4/bin:/gnu/store/lpkf3ydcdvxn8gcrzaq9cp3ri05h8qhs-file-5.38/bin:/gnu/store/6gqaw09zqw8w0vcax6simlq71bq7l5r0-diffutils-3.7/bin:/gnu/store/qw20chpgkgbcqmzhs60c8hjl1hmblyc8-patch-2.7.6/bin:/gnu/store/b5y5scfmh2d8kxcpl9p84294z2198cgf-findutils-4.7.0/bin:/gnu/store/9iwlsj7d6ffqhshy8qshf7p4fqwfwrvn-gawk-5.0.1/bin:/gnu/store/q1nfjb24vqjs1cgi8mlnskw34h16y09r-sed-4.8/bin:/gnu/store/4qr6mcvsxyzknxa7x1wny8x30f5i0r3n-grep-3.4/bin:/gnu/store/2v61vg0bizgrhybkqbrki2k7kr094waz-coreutils-8.32/bin:/gnu/store/b7jbh7kzzig0bxfswdj8nfj9bkljyyya-make-4.3/bin:/gnu/store/v1g7f3p4f0851mywrla8qmr9hb8jgfjr-bash-minimal-5.0.16/bin:/gnu/store/dyqxnydqk1810afjfbqzfvh0n83xyl62-ld-wrapper-0/bin:/gnu/store/50lyzn9bz6x4da66648kry29wn8afird-binutils-2.34/bin:/gnu/store/afpgzln8860m6yfhxy6i8n9rywbp85cy-gcc-7.5.0/bin:/gnu/store/z4li262il798hbl0l1h1k3a5g7r6bffa-glibc-2.31/bin:/gnu/store/z4li262il798hbl0l1h1k3a5g7r6bffa-glibc-2.31/sbin:/gnu/store/xddwdqcic57d2jprlkr6j1kdy9g8979c-curl-7.74.0/bin'
environment variable `R_LIBS_SITE' set to `/gnu/store/zc356rffsf4n48vcqxh40507pb4pnsjc-r-kernsmooth-2.23-20/site-library/:/gnu/store/pnj69mavwx8wic489n2cbxba2zi0h8na-r-reshape2-1.4.4/site-library/:/gnu/store/6nmym344mfrjf8vwmrfrfrnza4fc9ifa-r-rtsne-0.15/site-library/:/gnu/store/q8lkbhqjgc6c3sqp30gf8215addwd29s-r-shortread-1.48.0/site-library/:/gnu/store/zmg4iyl8ywlgw1438rs51xh4i5294hyz-r-stringdist-0.9.6.3/site-library/:/gnu/store/sr84ba6q3lw6yxbbh1nakl9gwn9r4ww5-r-stringr-1.4.0/site-library/:/gnu/store/xs0hj874x2b5nz52ixg2q82ak6pavb6x-r-rcpp-1.0.6/site-library/:/gnu/store/dsz5kyc3islw01hhrmhpc80y7b7wl6fs-r-plyr-1.8.6/site-library/:/gnu/store/k8p1ap1r2pghpmidbqmc9091a94zwyxf-r-zlibbioc-1.36.0/site-library/:/gnu/store/hixl2cagh4f267mdnwpgnpz8758ydnii-r-xvector-0.30.0/site-library/:/gnu/store/4qfk9cwc876il5yi57fxc1381zxl8y9r-r-s4vectors-0.28.1/site-library/:/gnu/store/g7wvh4jv9xw6m09qa8fygr9sbhp6g8hg-r-rsamtools-2.6.0/site-library/:/gnu/store/x95l4ks4rrrldwrkyji58mrh9xg3dz8x-r-latticeextra-0.6-29/site-library/:/gnu/store/bgs8xbd9lnbk1prmh7dlhqf24q84qjxh-r-lattice-0.20-44/site-library/:/gnu/store/xsr0xlv6x8s6gnd88w99wc1gz8c2hyb8-r-iranges-2.24.1/site-library/:/gnu/store/xi0cw8xhpsfg2a57bjkc17mdjsgs9pix-r-hwriter-1.3.2/site-library/:/gnu/store/xx4rch9pa1403yh4lrcmbnz8mkshsl2f-r-rhtslib-1.22.0/site-library/:/gnu/store/a54xq597pbdc2gpi3zpj61y0srayr7f4-r-genomicranges-1.42.0/site-library/:/gnu/store/7l11jcf42982qxh7crs0pbwj75kfy445-r-genomicalignments-1.26.0/site-library/:/gnu/store/kyib06a9a3j99af6pmswllha7wh6a5hs-r-genomeinfodb-1.26.7/site-library/:/gnu/store/lgz4l0qwhjpcf9qacw7sww0qzq3dsi68-r-biostrings-2.58.0/site-library/:/gnu/store/8fzg4j7mlysrbp5gj6zr9xi7apvgafnf-r-biocparallel-1.24.1/site-library/:/gnu/store/3jklg1lli1xk72mbymlzw6h3ifp0nphz-r-biocgenerics-0.36.1/site-library/:/gnu/store/flfl67allf8nhj2xfg4zxxqx94rqzrs2-r-biobase-2.50.0/site-library/:/gnu/store/gdjvngsf0ld256wrw6qzdilyxmv968q6-r-stringi-1.5.3/site-library/:/gnu/store/j2dl7sh5w69695f2dyma0jvck6jhcm5c-r-magrittr-2.0.1/site-library/:/gnu/store/2agxp2mzwcbdgd6cmq73l3xy8awf68qy-r-glue-1.4.2/site-library/:/gnu/store/a297nkdypgmg0c6fb8r0q46yry1a11nr-r-bitops-1.0-7/site-library/:/gnu/store/l81ng56a17cmwvfp17i1i1zaagd1gda5-r-rcolorbrewer-1.1-2/site-library/:/gnu/store/xfs6rw1wrh6z06qhnin8hxl01ix7fcnp-r-png-0.1-7/site-library/:/gnu/store/ykwmv32j0b3fwv7ld3q14757v8gwxjmv-r-jpeg-0.1-8.1/site-library/:/gnu/store/zqynw2dcxnjlnsji910y8jk3kvc0ryz9-r-summarizedexperiment-1.20.0/site-library/:/gnu/store/6yfxim873xviz0929km4wvx7y0bq2min-r-rcurl-1.95-0.1.2/site-library/:/gnu/store/dl5dzhrkshdnplsidklh5ahs4ws7wa8i-r-genomeinfodbdata-1.2.0/site-library/:/gnu/store/v7dkfkfmjshm6nd0yn3729v84q43y30q-r-crayon-1.4.1/site-library/:/gnu/store/4vyjnbsdhx644i3570kiff28q41a1hz0-r-bh-1.75.0-0/site-library/:/gnu/store/5bj615809r7k6ncpqsvp8y9vcy4myjrp-r-snow-0.4-3/site-library/:/gnu/store/f80ig037g2nxkpca88p68l983dxl47qk-r-futile-logger-1.4.3/site-library/:/gnu/store/j08805p6adpzcwbpfzlwfqgfcvyr0w2p-r-matrixgenerics-1.2.1/site-library/:/gnu/store/pbxlk1iz9k84r0l4c8148fa828asn5pg-r-matrix-1.3-2/site-library/:/gnu/store/1m8gkpvywydnr8rrqqg8h2gyqrhfr179-r-delayedarray-0.16.3/site-library/:/gnu/store/ik2dgkl6z02q9qdamdkwyr9mn7b3jncd-r-lambda-r-1.2.4/site-library/:/gnu/store/b5012lk9a1vbn6abpp2s4ly99fw6wlrh-r-futile-options-1.0.1/site-library/:/gnu/store/5xpq8qzhv5f51c4chcmkkqp1vc4sw974-r-matrixstats-0.58.0/site-library/:/gnu/store/18h22d0xz2jdcnqslkd4fi1g3a692yax-r-formatr-1.9/site-library/'
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/n1jk0w2wa4vpwmixaqn2y3la1l2sizzi-bzip2-1.0.8/include:/gnu/store/7p36raqgk6vn47bflxc9bsclqiib3phi-xz-5.2.4/include:/gnu/store/lpkf3ydcdvxn8gcrzaq9cp3ri05h8qhs-file-5.38/include:/gnu/store/9iwlsj7d6ffqhshy8qshf7p4fqwfwrvn-gawk-5.0.1/include:/gnu/store/b7jbh7kzzig0bxfswdj8nfj9bkljyyya-make-4.3/include:/gnu/store/50lyzn9bz6x4da66648kry29wn8afird-binutils-2.34/include:/gnu/store/afpgzln8860m6yfhxy6i8n9rywbp85cy-gcc-7.5.0/include:/gnu/store/z4li262il798hbl0l1h1k3a5g7r6bffa-glibc-2.31/include:/gnu/store/hk7l42fwxmnrnlhyiixvaqf1i1crcckp-linux-libre-headers-5.4.20/include:/gnu/store/pqyqxd5mbvlb22ifxzp4q2skjfq1p8yj-zlib-1.2.11/include:/gnu/store/xddwdqcic57d2jprlkr6j1kdy9g8979c-curl-7.74.0/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/n1jk0w2wa4vpwmixaqn2y3la1l2sizzi-bzip2-1.0.8/include:/gnu/store/7p36raqgk6vn47bflxc9bsclqiib3phi-xz-5.2.4/include:/gnu/store/lpkf3ydcdvxn8gcrzaq9cp3ri05h8qhs-file-5.38/include:/gnu/store/9iwlsj7d6ffqhshy8qshf7p4fqwfwrvn-gawk-5.0.1/include:/gnu/store/b7jbh7kzzig0bxfswdj8nfj9bkljyyya-make-4.3/include:/gnu/store/50lyzn9bz6x4da66648kry29wn8afird-binutils-2.34/include:/gnu/store/afpgzln8860m6yfhxy6i8n9rywbp85cy-gcc-7.5.0/include/c++:/gnu/store/afpgzln8860m6yfhxy6i8n9rywbp85cy-gcc-7.5.0/include:/gnu/store/z4li262il798hbl0l1h1k3a5g7r6bffa-glibc-2.31/include:/gnu/store/hk7l42fwxmnrnlhyiixvaqf1i1crcckp-linux-libre-headers-5.4.20/include:/gnu/store/pqyqxd5mbvlb22ifxzp4q2skjfq1p8yj-zlib-1.2.11/include:/gnu/store/xddwdqcic57d2jprlkr6j1kdy9g8979c-curl-7.74.0/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/7nxvcm0jk30ipzbbw3k7rbljymmsqpkp-r-minimal-4.0.4/lib:/gnu/store/n1jk0w2wa4vpwmixaqn2y3la1l2sizzi-bzip2-1.0.8/lib:/gnu/store/7p36raqgk6vn47bflxc9bsclqiib3phi-xz-5.2.4/lib:/gnu/store/lpkf3ydcdvxn8gcrzaq9cp3ri05h8qhs-file-5.38/lib:/gnu/store/9iwlsj7d6ffqhshy8qshf7p4fqwfwrvn-gawk-5.0.1/lib:/gnu/store/50lyzn9bz6x4da66648kry29wn8afird-binutils-2.34/lib:/gnu/store/z4li262il798hbl0l1h1k3a5g7r6bffa-glibc-2.31/lib:/gnu/store/rzk3v28mhi4m7sh0qippp9a5rzy03rkg-glibc-2.31-static/lib:/gnu/store/x6i3vfg4gaqd42cqb6mzk52v4lds1467-glibc-utf8-locales-2.31/lib:/gnu/store/pqyqxd5mbvlb22ifxzp4q2skjfq1p8yj-zlib-1.2.11/lib:/gnu/store/xddwdqcic57d2jprlkr6j1kdy9g8979c-curl-7.74.0/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/x6i3vfg4gaqd42cqb6mzk52v4lds1467-glibc-utf8-locales-2.31/lib/locale'
environment variable `SSL_CERT_DIR' unset
environment variable `SSL_CERT_FILE' unset
environment variable `CURL_CA_BUNDLE' unset
phase `set-paths' succeeded after 0.1 seconds
starting phase `install-locale'
using 'en_US.utf8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/deMULTIplex.Rproj' -> `./deMULTIplex.Rproj'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/README.md' -> `./README.md'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/DESCRIPTION' -> `./DESCRIPTION'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/NAMESPACE' -> `./NAMESPACE'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/R/MULTIseq.Classification.Suite.R' -> `./R/MULTIseq.Classification.Suite.R'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/R/MULTIseq.Align.Suite.R' -> `./R/MULTIseq.Align.Suite.R'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/Figures/Tutorial_preprocess.out.png' -> `./Figures/Tutorial_preprocess.out.png'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/Figures/Tutorial_BarRef_CellIDs.png' -> `./Figures/Tutorial_BarRef_CellIDs.png'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/Figures/Tutorial_match.rate.cs.png' -> `./Figures/Tutorial_match.rate.cs.png'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/Figures/MULTIseq_NegativeCellReclassification.png' -> `./Figures/MULTIseq_NegativeCellReclassification.png'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/Figures/MULTIseq_Alignment.png' -> `./Figures/MULTIseq_Alignment.png'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/Figures/Tutorial_good.qsweep.png' -> `./Figures/Tutorial_good.qsweep.png'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/Figures/MULTIseq_Alignment_2.png' -> `./Figures/MULTIseq_Alignment_2.png'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/Figures/Tutorial_good.vs.bad.bc.tsnes.png' -> `./Figures/Tutorial_good.vs.bad.bc.tsnes.png'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/Figures/MULTIseq_ClassificationWorkflow.png' -> `./Figures/MULTIseq_ClassificationWorkflow.png'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/Figures/Tutorial_align.out.png' -> `./Figures/Tutorial_align.out.png'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/Figures/MULTIseq.overview.png' -> `./Figures/MULTIseq.overview.png'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/Figures/Tutorial_final.classification.results.png' -> `./Figures/Tutorial_final.classification.results.png'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/Figures/Tutorial_rescue.out.png' -> `./Figures/Tutorial_rescue.out.png'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/man/findQ.Rd' -> `./man/findQ.Rd'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/man/classifyCells.Rd' -> `./man/classifyCells.Rd'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/man/barTSNE.Rd' -> `./man/barTSNE.Rd'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/man/MULTIseq.align.Rd' -> `./man/MULTIseq.align.Rd'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/man/MULTIseq.preProcess_allCells.Rd' -> `./man/MULTIseq.preProcess_allCells.Rd'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/man/bucket_cellIDs.Rd' -> `./man/bucket_cellIDs.Rd'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/man/rescueCells.Rd' -> `./man/rescueCells.Rd'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/man/MULTIseq.preProcess.Rd' -> `./man/MULTIseq.preProcess.Rd'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/man/localMaxima.Rd' -> `./man/localMaxima.Rd'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/man/findThresh.Rd' -> `./man/findThresh.Rd'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/man/findReclassCells.Rd' -> `./man/findReclassCells.Rd'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/man/alignRate.Rd' -> `./man/alignRate.Rd'
`/gnu/store/zd6n35b06fgvxycsbpkjsfgrijsry8ia-r-demultiplex-1.0.2-1.6e2a142-checkout/man/bucket_readTable.Rd' -> `./man/bucket_readTable.Rd'
phase `unpack' succeeded after 0.0 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
phase `patch-source-shebangs' succeeded after 0.0 seconds
starting phase `patch-generated-file-shebangs'
phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `install'
* installing *source* package ‘deMULTIplex’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (deMULTIplex)
phase `install' succeeded after 4.0 seconds
starting phase `check'
phase `check' succeeded after 0.0 seconds
starting phase `patch-shebangs'
phase `patch-shebangs' succeeded after 0.0 seconds
starting phase `strip'
phase `strip' succeeded after 0.0 seconds
starting phase `validate-runpath'
phase `validate-runpath' succeeded after 0.0 seconds
starting phase `validate-documentation-location'
phase `validate-documentation-location' succeeded after 0.0 seconds
starting phase `delete-info-dir-file'
phase `delete-info-dir-file' succeeded after 0.0 seconds
starting phase `patch-dot-desktop-files'
phase `patch-dot-desktop-files' succeeded after 0.0 seconds
starting phase `install-license-files'
installing 0 license files from '.'
phase `install-license-files' succeeded after 0.0 seconds
starting phase `reset-gzip-timestamps'
phase `reset-gzip-timestamps' succeeded after 0.0 seconds
starting phase `compress-documentation'
phase `compress-documentation' succeeded after 0.0 seconds