starting phase `set-SOURCE-DATE-EPOCH'
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starting phase `set-paths'
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environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/include:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/include:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/include:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/include:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/include:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/include:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include/c++:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/include:/gnu/store/gfapkk5c6hvl1d94m4sqnhn7f9l5gqyh-linux-libre-headers-5.4.20/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/lib:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/lib:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/lib:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/lib:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/lib:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/lib:/gnu/store/s3dcqzwqaakv1yx37by9chksdbkgih17-glibc-2.31-static/lib:/gnu/store/hwcky7446s952w0mwchhmm211ll07zrq-glibc-utf8-locales-2.31/lib'
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bioassayR/DESCRIPTION
bioassayR/NAMESPACE
bioassayR/R/
bioassayR/R/AllClasses.R
bioassayR/R/AllGenerics.R
bioassayR/R/BioassayDB-accessors.R
bioassayR/R/bayesian-cross-reactivity.R
bioassayR/R/bioassay-accessors.R
bioassayR/R/bioassaySet-accessors.R
bioassayR/R/loadingData.R
bioassayR/R/queries.R
bioassayR/R/similarity.R
bioassayR/README.md
bioassayR/build/
bioassayR/build/vignette.rds
bioassayR/data/
bioassayR/data/samplebioassay.rda
bioassayR/inst/
bioassayR/inst/CITATION
bioassayR/inst/NEWS.Rd
bioassayR/inst/doc/
bioassayR/inst/doc/bioassayR.R
bioassayR/inst/doc/bioassayR.Rmd
bioassayR/inst/doc/bioassayR.html
bioassayR/inst/extdata/
bioassayR/inst/extdata/exampleAssay.xml
bioassayR/inst/extdata/exampleScores.csv
bioassayR/inst/extdata/sampleDatabase.sqlite
bioassayR/man/
bioassayR/man/BioAssayDB-class.Rd
bioassayR/man/activeAgainst.Rd
bioassayR/man/activeTargets.Rd
bioassayR/man/addBioassayIndex.Rd
bioassayR/man/addDataSource.Rd
bioassayR/man/allCids.Rd
bioassayR/man/allTargets.Rd
bioassayR/man/assaySetTargets.Rd
bioassayR/man/bioactivityFingerprint.Rd
bioassayR/man/bioassay-class.Rd
bioassayR/man/bioassaySet-class.Rd
bioassayR/man/connectBioassayDB.Rd
bioassayR/man/crossReactivityProbability.Rd
bioassayR/man/disconnectBioassayDB.Rd
bioassayR/man/dropBioassay.Rd
bioassayR/man/dropBioassayIndex.Rd
bioassayR/man/getAssay.Rd
bioassayR/man/getAssays.Rd
bioassayR/man/getBioassaySetByCids.Rd
bioassayR/man/inactiveTargets.Rd
bioassayR/man/loadBioassay.Rd
bioassayR/man/loadIdMapping.Rd
bioassayR/man/newBioassayDB.Rd
bioassayR/man/parsePubChemBioassay.Rd
bioassayR/man/perTargetMatrix.Rd
bioassayR/man/queryBioassayDB.Rd
bioassayR/man/samplebioassay.Rd
bioassayR/man/scaleBioassaySet.Rd
bioassayR/man/screenedAtLeast.Rd
bioassayR/man/selectiveAgainst.Rd
bioassayR/man/targetSelectivity.Rd
bioassayR/man/translateTargetId.Rd
bioassayR/man/trinarySimilarity.Rd
bioassayR/tests/
bioassayR/tests/testthat/
bioassayR/tests/testthat.R
bioassayR/tests/testthat/test_bioactivityFingerprint.R
bioassayR/tests/testthat/test_crossReactivityProbability.R
bioassayR/tests/testthat/test_perTargetMatrix.R
bioassayR/tests/testthat/test_scaleBioassaySet.R
bioassayR/tests/testthat/test_targetSelectivity.R
bioassayR/tests/testthat/test_trinarySimilarity.R
bioassayR/vignettes/
bioassayR/vignettes/Makefile
bioassayR/vignettes/Makefile_bootstrap
bioassayR/vignettes/bibtex.bib
bioassayR/vignettes/bioassayR.Rmd
bioassayR/vignettes/bioassayR_cache/
bioassayR/vignettes/bioassayR_cache/html/
bioassayR/vignettes/bioassayR_cache/html/__packages
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bioassayR/vignettes/figures/
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bioassayR/vignettes/getBM.RData
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bioassayR/vignettes/header.html
bioassayR/vignettes/html.template_bootstrap
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starting phase `install'
* installing *source* package ‘bioassayR’ ...
** using staged installation
** R
** data
** inst
** tests
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘organism’ in package ‘bioassayR’
Creating a new generic function for ‘organism<-’ in package ‘bioassayR’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bioassayR)
phase `install' succeeded after 15.0 seconds
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Testing examples for package ‘bioassayR’
Running specific tests for package ‘bioassayR’
  Running ‘testthat.R’
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