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phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/hhfs9m44gw5xlpr9737hp4raxkki4plm-python-wrapper-3.9.9/bin:/gnu/store/8gnahljsd06hax5vwh5kmk751jcjjzwy-tar-1.34/bin:/gnu/store/g4fr5clvd6sb735x92dbf068jl9z0959-gzip-1.10/bin:/gnu/store/sg7xawwdh23vxb6jqbnc6sckdnx00ldg-bzip2-1.0.8/bin:/gnu/store/pps1pijrj4jcp23k658ymhisdwf58bva-xz-5.2.5/bin:/gnu/store/l8az077ik67pz29nhhjai5ra5vlrcwz4-file-5.39/bin:/gnu/store/fncbwpmpkx5walrm3bnx586wj4kppkzr-diffutils-3.8/bin:/gnu/store/408wpqw5kx0v4p304vi6g86d1a95ynyy-patch-2.7.6/bin:/gnu/store/c7md7zma2706lzn96zrnzx70pq7m2b2k-findutils-4.8.0/bin:/gnu/store/ik5jr3x2s6vr7d77lmrrc2i03mfnr3hn-gawk-5.1.0/bin:/gnu/store/8iy4h07y9rcnr0i1a17r14fl5frx283s-sed-4.8/bin:/gnu/store/14w43053md7pprc76z33rdxjwc8vnkxd-grep-3.6/bin:/gnu/store/32fqqi7hkbx22jh917mf5g7phin5r16y-coreutils-8.32/bin:/gnu/store/0nz9kdv53yf2f87bgxa6wv8fcsrsp7gi-make-4.3/bin:/gnu/store/97xwzdsw9p6019dbml5mzf781c7avfkq-bash-minimal-5.1.8/bin:/gnu/store/95fsg9yv455ybq10qs409g6wffmqpn44-ld-wrapper-0/bin:/gnu/store/aaawb28w66dpmypf7qfndp8wmgrx7d0j-binutils-2.37/bin:/gnu/store/j1qipvd6087zklgxm0b3dphsagq4s5sa-gcc-10.3.0/bin:/gnu/store/nm8h8f988c2wvjk31lg1ww5zr65cd05c-glibc-2.33/bin:/gnu/store/nm8h8f988c2wvjk31lg1ww5zr65cd05c-glibc-2.33/sbin:/gnu/store/dh5rr8gd148afs3jzijs8i9gfwwi6igz-python-3.9.9/bin'
environment variable `GUIX_PYTHONPATH' set to `/gnu/store/dh5rr8gd148afs3jzijs8i9gfwwi6igz-python-3.9.9/lib/python3.9/site-packages'
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environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/sg7xawwdh23vxb6jqbnc6sckdnx00ldg-bzip2-1.0.8/include:/gnu/store/pps1pijrj4jcp23k658ymhisdwf58bva-xz-5.2.5/include:/gnu/store/l8az077ik67pz29nhhjai5ra5vlrcwz4-file-5.39/include:/gnu/store/ik5jr3x2s6vr7d77lmrrc2i03mfnr3hn-gawk-5.1.0/include:/gnu/store/0nz9kdv53yf2f87bgxa6wv8fcsrsp7gi-make-4.3/include:/gnu/store/aaawb28w66dpmypf7qfndp8wmgrx7d0j-binutils-2.37/include:/gnu/store/j1qipvd6087zklgxm0b3dphsagq4s5sa-gcc-10.3.0/include/c++:/gnu/store/j1qipvd6087zklgxm0b3dphsagq4s5sa-gcc-10.3.0/include:/gnu/store/nm8h8f988c2wvjk31lg1ww5zr65cd05c-glibc-2.33/include:/gnu/store/dh5rr8gd148afs3jzijs8i9gfwwi6igz-python-3.9.9/include:/gnu/store/sj8ps64rbrj0qv4x2b374fbznz49p4bi-linux-libre-headers-5.10.35/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/sg7xawwdh23vxb6jqbnc6sckdnx00ldg-bzip2-1.0.8/lib:/gnu/store/pps1pijrj4jcp23k658ymhisdwf58bva-xz-5.2.5/lib:/gnu/store/l8az077ik67pz29nhhjai5ra5vlrcwz4-file-5.39/lib:/gnu/store/ik5jr3x2s6vr7d77lmrrc2i03mfnr3hn-gawk-5.1.0/lib:/gnu/store/aaawb28w66dpmypf7qfndp8wmgrx7d0j-binutils-2.37/lib:/gnu/store/nm8h8f988c2wvjk31lg1ww5zr65cd05c-glibc-2.33/lib:/gnu/store/434qrmrs05vk6grbldf3a1awam5rxpm4-glibc-2.33-static/lib:/gnu/store/z4c91fgx1kv5yhzcj64v2haabzcc9q4n-glibc-utf8-locales-2.33/lib:/gnu/store/dh5rr8gd148afs3jzijs8i9gfwwi6igz-python-3.9.9/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/z4c91fgx1kv5yhzcj64v2haabzcc9q4n-glibc-utf8-locales-2.33/lib/locale'
phase `set-paths' succeeded after 0.0 seconds
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using 'en_US.utf8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/.ctags' -> `./.ctags'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/.gitignore' -> `./.gitignore'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/AUTHORS.rst' -> `./AUTHORS.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/CHANGES.rst' -> `./CHANGES.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/LICENSE.rst' -> `./LICENSE.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/MANIFEST.in' -> `./MANIFEST.in'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/README.rst' -> `./README.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/clean.sh' -> `./clean.sh'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/pypi_release.sh' -> `./pypi_release.sh'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/requirements.readthedocs.txt' -> `./requirements.readthedocs.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/setup.py' -> `./setup.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/__init__.py' -> `./tests/__init__.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/__main__.py' -> `./tests/__main__.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/base_newick_test_cases.py' -> `./tests/base_newick_test_cases.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/base_standard_trees_parsing_test_cases.py' -> `./tests/base_standard_trees_parsing_test_cases.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_asciitree.py' -> `./tests/test_asciitree.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_birthdeath.py' -> `./tests/test_birthdeath.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_coalescent.py' -> `./tests/test_coalescent.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_container_frozen_ordered_dict.py' -> `./tests/test_container_frozen_ordered_dict.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_container_normalized_bitmask_dict.py' -> `./tests/test_container_normalized_bitmask_dict.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_container_ordered_set.py' -> `./tests/test_container_ordered_set.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_continuous.py' -> `./tests/test_continuous.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_dataio_basic_tree.py' -> `./tests/test_dataio_basic_tree.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_dataio_fasta_reader.py' -> `./tests/test_dataio_fasta_reader.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_dataio_fasta_writer.py' -> `./tests/test_dataio_fasta_writer.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_dataio_newick_reader_rooting.py' -> `./tests/test_dataio_newick_reader_rooting.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_dataio_newick_reader_tree.py' -> `./tests/test_dataio_newick_reader_tree.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_dataio_newick_reader_tree_iter.py' -> `./tests/test_dataio_newick_reader_tree_iter.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_dataio_newick_reader_tree_list.py' -> `./tests/test_dataio_newick_reader_tree_list.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_dataio_newick_writer.py' -> `./tests/test_dataio_newick_writer.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_dataio_nexml_reader_chars.py' -> `./tests/test_dataio_nexml_reader_chars.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_dataio_nexml_reader_tree_list.py' -> `./tests/test_dataio_nexml_reader_tree_list.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_dataio_nexml_writer_chars.py' -> `./tests/test_dataio_nexml_writer_chars.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_dataio_nexml_writer_trees.py' -> `./tests/test_dataio_nexml_writer_trees.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_dataio_nexus_reader_chars.py' -> `./tests/test_dataio_nexus_reader_chars.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_dataio_nexus_reader_dataset.py' -> `./tests/test_dataio_nexus_reader_dataset.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_dataio_nexus_reader_tree_list.py' -> `./tests/test_dataio_nexus_reader_tree_list.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_dataio_nexus_taxon_handling.py' -> `./tests/test_dataio_nexus_taxon_handling.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_dataio_nexus_tree_yielder.py' -> `./tests/test_dataio_nexus_tree_yielder.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_dataio_nexus_writer_chars.py' -> `./tests/test_dataio_nexus_writer_chars.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_dataio_nexus_writer_dataset.py' -> `./tests/test_dataio_nexus_writer_dataset.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_dataio_nexus_writer_tree.py' -> `./tests/test_dataio_nexus_writer_tree.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_dataio_nexus_writer_tree_list.py' -> `./tests/test_dataio_nexus_writer_tree_list.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_dataio_phylip_reader_chars.py' -> `./tests/test_dataio_phylip_reader_chars.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_dataio_phylip_writer_chars.py' -> `./tests/test_dataio_phylip_writer_chars.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_dataio_tokenizer.py' -> `./tests/test_dataio_tokenizer.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_datamodel_annotations.py' -> `./tests/test_datamodel_annotations.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_datamodel_bipartitions.py' -> `./tests/test_datamodel_bipartitions.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_datamodel_charmatrix.py' -> `./tests/test_datamodel_charmatrix.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_datamodel_dataset.py' -> `./tests/test_datamodel_dataset.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_datamodel_split_bitmasks.py' -> `./tests/test_datamodel_split_bitmasks.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_datamodel_statealphabet.py' -> `./tests/test_datamodel_statealphabet.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_datamodel_taxon.py' -> `./tests/test_datamodel_taxon.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_datamodel_tree_construction_copying_and_identity.py' -> `./tests/test_datamodel_tree_construction_copying_and_identity.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_datamodel_tree_edge_fundamentals.py' -> `./tests/test_datamodel_tree_edge_fundamentals.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_datamodel_tree_list.py' -> `./tests/test_datamodel_tree_list.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_datamodel_tree_node_fundamentals.py' -> `./tests/test_datamodel_tree_node_fundamentals.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_datamodel_tree_structure_and_iteration.py' -> `./tests/test_datamodel_tree_structure_and_iteration.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_datamodel_tree_taxon_management.py' -> `./tests/test_datamodel_tree_taxon_management.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_datamodel_treearray.py' -> `./tests/test_datamodel_treearray.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_fitch.py' -> `./tests/test_fitch.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_multispeciescoalescent.py' -> `./tests/test_multispeciescoalescent.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_parsimony_scoring.py' -> `./tests/test_parsimony_scoring.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_paup.py' -> `./tests/test_paup.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_phylogenetic_distance_matrix.py' -> `./tests/test_phylogenetic_distance_matrix.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_popgenstat.py' -> `./tests/test_popgenstat.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_protractedspeciation.py' -> `./tests/test_protractedspeciation.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_sfs.py' -> `./tests/test_sfs.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_statistics.py' -> `./tests/test_statistics.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_tree_calculations_and_metrics.py' -> `./tests/test_tree_calculations_and_metrics.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_tree_from_splits.py' -> `./tests/test_tree_from_splits.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_tree_operations_and_manipulations.py' -> `./tests/test_tree_operations_and_manipulations.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_tree_reconciliation_and_discordance.py' -> `./tests/test_tree_reconciliation_and_discordance.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_tree_shape_kernel.py' -> `./tests/test_tree_shape_kernel.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_tree_split_compatibility.py' -> `./tests/test_tree_split_compatibility.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/test_tree_summarization_and_consensus.py' -> `./tests/test_tree_summarization_and_consensus.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/support/__init__.py' -> `./tests/support/__init__.py'
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`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/support/coverage_analysis.py' -> `./tests/support/coverage_analysis.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/support/curated_dataset.py' -> `./tests/support/curated_dataset.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/support/curated_test_tree.py' -> `./tests/support/curated_test_tree.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/support/curated_test_tree_list.py' -> `./tests/support/curated_test_tree_list.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/support/dendropytest.py' -> `./tests/support/dendropytest.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/support/mockrandom.py' -> `./tests/support/mockrandom.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/support/mockreader.py' -> `./tests/support/mockreader.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/support/pathmap.py' -> `./tests/support/pathmap.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/support/paupsplitsreference.py' -> `./tests/support/paupsplitsreference.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/support/standard_file_test_chars.py' -> `./tests/support/standard_file_test_chars.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/support/standard_file_test_datasets.py' -> `./tests/support/standard_file_test_datasets.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/support/standard_file_test_trees.py' -> `./tests/support/standard_file_test_trees.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/APG_Angiosperms.newick' -> `./tests/data/trees/APG_Angiosperms.newick'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/APG_Angiosperms.nexus' -> `./tests/data/trees/APG_Angiosperms.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/Bininda-emonds_2007_mammals.newick' -> `./tests/data/trees/Bininda-emonds_2007_mammals.newick'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/Bininda-emonds_2007_mammals.nexus' -> `./tests/data/trees/Bininda-emonds_2007_mammals.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/GEBA.tree.newick' -> `./tests/data/trees/GEBA.tree.newick'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/GEBA.tree.nexus' -> `./tests/data/trees/GEBA.tree.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/Jetz_et_al_2012_Aves.sample.tree.newick' -> `./tests/data/trees/Jetz_et_al_2012_Aves.sample.tree.newick'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/Jetz_et_al_2012_Aves.sample.tree.nexus' -> `./tests/data/trees/Jetz_et_al_2012_Aves.sample.tree.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/Smith_2001_angiosperms.newick' -> `./tests/data/trees/Smith_2001_angiosperms.newick'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/Smith_2001_angiosperms.nexus' -> `./tests/data/trees/Smith_2001_angiosperms.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/apternodus.tre' -> `./tests/data/trees/apternodus.tre'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/bipartition_encoding_fixture.json' -> `./tests/data/trees/bipartition_encoding_fixture.json'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/bird_orders.newick' -> `./tests/data/trees/bird_orders.newick'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/bird_orders.nex' -> `./tests/data/trees/bird_orders.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/cetaceans.mb.no-clock.mcmc.trees' -> `./tests/data/trees/cetaceans.mb.no-clock.mcmc.trees'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/cetaceans.mb.no-clock.mcmc.weighted-01.trees' -> `./tests/data/trees/cetaceans.mb.no-clock.mcmc.weighted-01.trees'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/cetaceans.mb.no-clock.mcmc.weighted-02.trees' -> `./tests/data/trees/cetaceans.mb.no-clock.mcmc.weighted-02.trees'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/cetaceans.mb.no-clock.mcmc.weighted-03.trees' -> `./tests/data/trees/cetaceans.mb.no-clock.mcmc.weighted-03.trees'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/cetaceans.mb.strict-clock.mcmc.trees' -> `./tests/data/trees/cetaceans.mb.strict-clock.mcmc.trees'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/cetaceans.mb.strict-clock.mcmc.weighted-01.trees' -> `./tests/data/trees/cetaceans.mb.strict-clock.mcmc.weighted-01.trees'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/cetaceans.mb.strict-clock.mcmc.weighted-02.trees' -> `./tests/data/trees/cetaceans.mb.strict-clock.mcmc.weighted-02.trees'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/cetaceans.mb.strict-clock.mcmc.weighted-03.trees' -> `./tests/data/trees/cetaceans.mb.strict-clock.mcmc.weighted-03.trees'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/cetaceans.raxml.bootstraps.trees' -> `./tests/data/trees/cetaceans.raxml.bootstraps.trees'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/cetaceans.raxml.bootstraps.weighted-01.trees' -> `./tests/data/trees/cetaceans.raxml.bootstraps.weighted-01.trees'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/cetaceans.raxml.bootstraps.weighted-02.trees' -> `./tests/data/trees/cetaceans.raxml.bootstraps.weighted-02.trees'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/cetaceans.raxml.bootstraps.weighted-03.trees' -> `./tests/data/trees/cetaceans.raxml.bootstraps.weighted-03.trees'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/cetaceans.taxa.nex' -> `./tests/data/trees/cetaceans.taxa.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/community.tree.newick' -> `./tests/data/trees/community.tree.newick'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/curated-with-translate-block-and-internal-taxa.nex' -> `./tests/data/trees/curated-with-translate-block-and-internal-taxa.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/curated-with-translate-block-and-no-taxa-block-and-untranslated-internal-taxa.nex' -> `./tests/data/trees/curated-with-translate-block-and-no-taxa-block-and-untranslated-internal-taxa.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/curated-with-translate-block-and-no-taxa-block.nex' -> `./tests/data/trees/curated-with-translate-block-and-no-taxa-block.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/curated-with-translate-block-and-untranslated-internal-taxa.nex' -> `./tests/data/trees/curated-with-translate-block-and-untranslated-internal-taxa.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/deepcoal1.nex' -> `./tests/data/trees/deepcoal1.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-multifurcating-rooted-annotated.json' -> `./tests/data/trees/dendropy-test-trees-multifurcating-rooted-annotated.json'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-multifurcating-rooted-annotated.newick' -> `./tests/data/trees/dendropy-test-trees-multifurcating-rooted-annotated.newick'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-multifurcating-rooted-annotated.nexml' -> `./tests/data/trees/dendropy-test-trees-multifurcating-rooted-annotated.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-multifurcating-rooted-annotated.nexus' -> `./tests/data/trees/dendropy-test-trees-multifurcating-rooted-annotated.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-multifurcating-rooted-annotated.nexus-metadata-comments.json' -> `./tests/data/trees/dendropy-test-trees-multifurcating-rooted-annotated.nexus-metadata-comments.json'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-multifurcating-rooted.json' -> `./tests/data/trees/dendropy-test-trees-multifurcating-rooted.json'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-multifurcating-rooted.newick' -> `./tests/data/trees/dendropy-test-trees-multifurcating-rooted.newick'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-multifurcating-rooted.nexml' -> `./tests/data/trees/dendropy-test-trees-multifurcating-rooted.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-multifurcating-rooted.nexus' -> `./tests/data/trees/dendropy-test-trees-multifurcating-rooted.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-multifurcating-unrooted.json' -> `./tests/data/trees/dendropy-test-trees-multifurcating-unrooted.json'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-multifurcating-unrooted.newick' -> `./tests/data/trees/dendropy-test-trees-multifurcating-unrooted.newick'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-multifurcating-unrooted.nexml' -> `./tests/data/trees/dendropy-test-trees-multifurcating-unrooted.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-multifurcating-unrooted.nexus' -> `./tests/data/trees/dendropy-test-trees-multifurcating-unrooted.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n10-rooted-treeshapes.json' -> `./tests/data/trees/dendropy-test-trees-n10-rooted-treeshapes.json'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n10-rooted-treeshapes.newick' -> `./tests/data/trees/dendropy-test-trees-n10-rooted-treeshapes.newick'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n10-rooted-treeshapes.nexml' -> `./tests/data/trees/dendropy-test-trees-n10-rooted-treeshapes.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n10-rooted-treeshapes.nexus' -> `./tests/data/trees/dendropy-test-trees-n10-rooted-treeshapes.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n12-x2.json' -> `./tests/data/trees/dendropy-test-trees-n12-x2.json'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n12-x2.newick' -> `./tests/data/trees/dendropy-test-trees-n12-x2.newick'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n12-x2.nexml' -> `./tests/data/trees/dendropy-test-trees-n12-x2.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n12-x2.nexus' -> `./tests/data/trees/dendropy-test-trees-n12-x2.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n14-unrooted-treeshapes.json' -> `./tests/data/trees/dendropy-test-trees-n14-unrooted-treeshapes.json'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n14-unrooted-treeshapes.newick' -> `./tests/data/trees/dendropy-test-trees-n14-unrooted-treeshapes.newick'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n14-unrooted-treeshapes.nexml' -> `./tests/data/trees/dendropy-test-trees-n14-unrooted-treeshapes.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n14-unrooted-treeshapes.nexus' -> `./tests/data/trees/dendropy-test-trees-n14-unrooted-treeshapes.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n33-unrooted-annotated-x10a.json' -> `./tests/data/trees/dendropy-test-trees-n33-unrooted-annotated-x10a.json'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n33-unrooted-annotated-x10a.newick' -> `./tests/data/trees/dendropy-test-trees-n33-unrooted-annotated-x10a.newick'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n33-unrooted-annotated-x10a.nexml' -> `./tests/data/trees/dendropy-test-trees-n33-unrooted-annotated-x10a.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n33-unrooted-annotated-x10a.nexus' -> `./tests/data/trees/dendropy-test-trees-n33-unrooted-annotated-x10a.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n33-unrooted-annotated-x10a.nexus-metadata-comments.json' -> `./tests/data/trees/dendropy-test-trees-n33-unrooted-annotated-x10a.nexus-metadata-comments.json'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n33-unrooted-x100a.json' -> `./tests/data/trees/dendropy-test-trees-n33-unrooted-x100a.json'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n33-unrooted-x100a.newick' -> `./tests/data/trees/dendropy-test-trees-n33-unrooted-x100a.newick'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n33-unrooted-x100a.nexml' -> `./tests/data/trees/dendropy-test-trees-n33-unrooted-x100a.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n33-unrooted-x100a.nexus' -> `./tests/data/trees/dendropy-test-trees-n33-unrooted-x100a.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n33-unrooted-x10a.json' -> `./tests/data/trees/dendropy-test-trees-n33-unrooted-x10a.json'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n33-unrooted-x10a.newick' -> `./tests/data/trees/dendropy-test-trees-n33-unrooted-x10a.newick'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n33-unrooted-x10a.nexml' -> `./tests/data/trees/dendropy-test-trees-n33-unrooted-x10a.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n33-unrooted-x10a.nexus' -> `./tests/data/trees/dendropy-test-trees-n33-unrooted-x10a.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n33-unrooted-x10b.json' -> `./tests/data/trees/dendropy-test-trees-n33-unrooted-x10b.json'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n33-unrooted-x10b.newick' -> `./tests/data/trees/dendropy-test-trees-n33-unrooted-x10b.newick'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n33-unrooted-x10b.nexml' -> `./tests/data/trees/dendropy-test-trees-n33-unrooted-x10b.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/dendropy-test-trees-n33-unrooted-x10b.nexus' -> `./tests/data/trees/dendropy-test-trees-n33-unrooted-x10b.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/feb032009.splits.csv' -> `./tests/data/trees/feb032009.splits.csv'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/feb032009.trees.newick' -> `./tests/data/trees/feb032009.trees.newick'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/feb032009.trees.nexus' -> `./tests/data/trees/feb032009.trees.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/hiv1.newick' -> `./tests/data/trees/hiv1.newick'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/hiv1.nexus' -> `./tests/data/trees/hiv1.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/incomplete_leaves_rooted.dendropy-pruned.nex' -> `./tests/data/trees/incomplete_leaves_rooted.dendropy-pruned.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/incomplete_leaves_rooted.paup-pruned.nex' -> `./tests/data/trees/incomplete_leaves_rooted.paup-pruned.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/incomplete_leaves_rooted.pre-pruned.nex' -> `./tests/data/trees/incomplete_leaves_rooted.pre-pruned.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/incomplete_leaves_rooted.pruned_taxa.txt' -> `./tests/data/trees/incomplete_leaves_rooted.pruned_taxa.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/incomplete_leaves_rooted.retained_taxa.txt' -> `./tests/data/trees/incomplete_leaves_rooted.retained_taxa.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/incomplete_leaves_unrooted.dendropy-pruned.nex' -> `./tests/data/trees/incomplete_leaves_unrooted.dendropy-pruned.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/incomplete_leaves_unrooted.paup-pruned.nex' -> `./tests/data/trees/incomplete_leaves_unrooted.paup-pruned.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/incomplete_leaves_unrooted.pre-pruned.nex' -> `./tests/data/trees/incomplete_leaves_unrooted.pre-pruned.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/incomplete_leaves_unrooted.pruned_taxa.txt' -> `./tests/data/trees/incomplete_leaves_unrooted.pruned_taxa.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/incomplete_leaves_unrooted.retained_taxa.txt' -> `./tests/data/trees/incomplete_leaves_unrooted.retained_taxa.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/issue_mth_2009-02-03.rooted.nexus' -> `./tests/data/trees/issue_mth_2009-02-03.rooted.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/issue_mth_2009-02-03.unrooted.nexus' -> `./tests/data/trees/issue_mth_2009-02-03.unrooted.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/maj-rule-bug1.trees.nexus' -> `./tests/data/trees/maj-rule-bug1.trees.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/maj-rule-bug2.trees.nexus' -> `./tests/data/trees/maj-rule-bug2.trees.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/multitreeblocks.nex' -> `./tests/data/trees/multitreeblocks.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/multitreeblocks2.nex' -> `./tests/data/trees/multitreeblocks2.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/primates.beast.mcct.meanh.tre' -> `./tests/data/trees/primates.beast.mcct.meanh.tre'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/primates.beast.mcct.medianh.tre' -> `./tests/data/trees/primates.beast.mcct.medianh.tre'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/primates.beast.mcct.noedgelens.tree' -> `./tests/data/trees/primates.beast.mcct.noedgelens.tree'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/primates.beast.mcmc.trees' -> `./tests/data/trees/primates.beast.mcmc.trees'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/primates.trees.nexus' -> `./tests/data/trees/primates.trees.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/prune_rooted.dendropy-pruned.nex' -> `./tests/data/trees/prune_rooted.dendropy-pruned.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/prune_rooted.paup-pruned.nex' -> `./tests/data/trees/prune_rooted.paup-pruned.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/prune_rooted.pre-pruned.nex' -> `./tests/data/trees/prune_rooted.pre-pruned.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/prune_rooted.pruned_taxa.txt' -> `./tests/data/trees/prune_rooted.pruned_taxa.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/prune_rooted.retained_taxa.txt' -> `./tests/data/trees/prune_rooted.retained_taxa.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/prune_unrooted.dendropy-pruned.nex' -> `./tests/data/trees/prune_unrooted.dendropy-pruned.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/prune_unrooted.paup-pruned.nex' -> `./tests/data/trees/prune_unrooted.paup-pruned.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/prune_unrooted.pre-pruned.nex' -> `./tests/data/trees/prune_unrooted.pre-pruned.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/prune_unrooted.pruned_taxa.txt' -> `./tests/data/trees/prune_unrooted.pruned_taxa.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/prune_unrooted.retained_taxa.txt' -> `./tests/data/trees/prune_unrooted.retained_taxa.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/pythonidae.annotated.bad.nexml' -> `./tests/data/trees/pythonidae.annotated.bad.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/pythonidae.annotated.nexml' -> `./tests/data/trees/pythonidae.annotated.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/pythonidae.beast.mcmc.trees' -> `./tests/data/trees/pythonidae.beast.mcmc.trees'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/pythonidae.beast.summary.tre' -> `./tests/data/trees/pythonidae.beast.summary.tre'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/pythonidae.mb.con' -> `./tests/data/trees/pythonidae.mb.con'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/pythonidae.mb.run1.t' -> `./tests/data/trees/pythonidae.mb.run1.t'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/pythonidae.mb.run2.t' -> `./tests/data/trees/pythonidae.mb.run2.t'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/pythonidae.mb.run3.t' -> `./tests/data/trees/pythonidae.mb.run3.t'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/pythonidae.mb.run4.t' -> `./tests/data/trees/pythonidae.mb.run4.t'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/pythonidae.mlboots.newick.tre' -> `./tests/data/trees/pythonidae.mlboots.newick.tre'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/pythonidae.mlboots.nexus.tre' -> `./tests/data/trees/pythonidae.mlboots.nexus.tre'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/pythonidae.mle.newick' -> `./tests/data/trees/pythonidae.mle.newick'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/pythonidae.mle.nex' -> `./tests/data/trees/pythonidae.mle.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/pythonidae.mle.numbered-nodes.newick' -> `./tests/data/trees/pythonidae.mle.numbered-nodes.newick'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/pythonidae.random.bd0301.midpoint-rooted.tre' -> `./tests/data/trees/pythonidae.random.bd0301.midpoint-rooted.tre'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/pythonidae.random.bd0301.randomly-rooted.tre' -> `./tests/data/trees/pythonidae.random.bd0301.randomly-rooted.tre'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/pythonidae.random.bd0301.tre' -> `./tests/data/trees/pythonidae.random.bd0301.tre'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/pythonidae.reference-trees.newick' -> `./tests/data/trees/pythonidae.reference-trees.newick'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/pythonidae.reference-trees.nexus' -> `./tests/data/trees/pythonidae.reference-trees.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/pythonidae.reference-trees.no-taxa-block.nexus' -> `./tests/data/trees/pythonidae.reference-trees.no-taxa-block.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/pythonidae.reference-trees.no-taxa-no-translate-block.nexus' -> `./tests/data/trees/pythonidae.reference-trees.no-taxa-no-translate-block.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/pythonidae.reference-trees.taxon-numbers-only.newick' -> `./tests/data/trees/pythonidae.reference-trees.taxon-numbers-only.newick'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/rana.trees.nexus' -> `./tests/data/trees/rana.trees.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/trees/treebase_s373.xml' -> `./tests/data/trees/treebase_s373.xml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.no-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.mb.strict-clock.mcmc.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-01.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-02.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-False.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-None.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-False.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-None.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt' -> `./tests/data/splits/cetaceans.raxml.bootstraps.weighted-03.trees.is-rooted-True.use-tree-weights-True.burnin-150.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/issue_mth_2009-02-03.rooted.nexus.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-False.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-False.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-False.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-None.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-None.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-None.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt' -> `./tests/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-True.use-tree-weights-False.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt' -> `./tests/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-True.use-tree-weights-None.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt' -> `./tests/data/splits/issue_mth_2009-02-03.unrooted.nexus.is-rooted-True.use-tree-weights-True.burnin-0.splits.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/other/birth-death-test-data1.json' -> `./tests/data/other/birth-death-test-data1.json'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/other/community.data.tsv' -> `./tests/data/other/community.data.tsv'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/other/community.data.weighted.unnormalized.ses.mntd.csv' -> `./tests/data/other/community.data.weighted.unnormalized.ses.mntd.csv'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/other/community.data.weighted.unnormalized.ses.mpd.csv' -> `./tests/data/other/community.data.weighted.unnormalized.ses.mpd.csv'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/other/hiv1.distances.csv' -> `./tests/data/other/hiv1.distances.csv'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/other/hiv1.node-to-node-dists.csv' -> `./tests/data/other/hiv1.node-to-node-dists.csv'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/other/hiv1.unweighted.node-to-node-dists.csv' -> `./tests/data/other/hiv1.unweighted.node-to-node-dists.csv'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/other/laurasiatherian.distances.ml.csv' -> `./tests/data/other/laurasiatherian.distances.ml.csv'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/other/multispecies_coalescent_test_data.json' -> `./tests/data/other/multispecies_coalescent_test_data.json'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/other/protracted_speciation_process.json' -> `./tests/data/other/protracted_speciation_process.json'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/other/pythonidae.mle.node-to-node-dists.csv' -> `./tests/data/other/pythonidae.mle.node-to-node-dists.csv'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/other/pythonidae.mle.unweighted.node-to-node-dists.csv' -> `./tests/data/other/pythonidae.mle.unweighted.node-to-node-dists.csv'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/other/pythonidae.mle.unweighted.pdm.csv' -> `./tests/data/other/pythonidae.mle.unweighted.pdm.csv'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/other/pythonidae.mle.weighted.pdm.csv' -> `./tests/data/other/pythonidae.mle.weighted.pdm.csv'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/other/saitou_and_nei_1987_table1.csv' -> `./tests/data/other/saitou_and_nei_1987_table1.csv'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/other/wpnjex.csv' -> `./tests/data/other/wpnjex.csv'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/other/wpupgmaex.csv' -> `./tests/data/other/wpupgmaex.csv'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/mixed/GEBA.mixed.nexus' -> `./tests/data/mixed/GEBA.mixed.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/mixed/geospiza.nex' -> `./tests/data/mixed/geospiza.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/mixed/multitaxa_mesquite.nex' -> `./tests/data/mixed/multitaxa_mesquite.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/mixed/reference_single_taxonset_dataset.nex' -> `./tests/data/mixed/reference_single_taxonset_dataset.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/mixed/standard-test-mixed.1.basic.nexus' -> `./tests/data/mixed/standard-test-mixed.1.basic.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/COII_Apes.nex' -> `./tests/data/chars/COII_Apes.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/GEBA.chars.nexus' -> `./tests/data/chars/GEBA.chars.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/actinopterygii.chars.nexus' -> `./tests/data/chars/actinopterygii.chars.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/angiosperms.chars.nexus' -> `./tests/data/chars/angiosperms.chars.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/angiosperms.chars.txt' -> `./tests/data/chars/angiosperms.chars.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/apternodus.chars.hacked-for-tests.txt' -> `./tests/data/chars/apternodus.chars.hacked-for-tests.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/apternodus.chars.interleaved.nexus' -> `./tests/data/chars/apternodus.chars.interleaved.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/apternodus.chars.nexml' -> `./tests/data/chars/apternodus.chars.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/apternodus.chars.nexus' -> `./tests/data/chars/apternodus.chars.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/avian-ovomucoids.chars.nexus' -> `./tests/data/chars/avian-ovomucoids.chars.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/avian-ovomucoids.chars.txt' -> `./tests/data/chars/avian-ovomucoids.chars.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/bad_names.fasta' -> `./tests/data/chars/bad_names.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/caenophidia_mos.chars.fasta' -> `./tests/data/chars/caenophidia_mos.chars.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/caenophidia_mos.chars.nexus' -> `./tests/data/chars/caenophidia_mos.chars.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/caenophidia_mos.chars.txt' -> `./tests/data/chars/caenophidia_mos.chars.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/cetaceans.nex' -> `./tests/data/chars/cetaceans.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/codons.nexml' -> `./tests/data/chars/codons.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/community.data.tsv' -> `./tests/data/chars/community.data.tsv'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/crotaphytus_bicinctores.cytb.aligned.nexml' -> `./tests/data/chars/crotaphytus_bicinctores.cytb.aligned.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/crotaphytus_bicinctores.nd2.aligned.nexml' -> `./tests/data/chars/crotaphytus_bicinctores.nd2.aligned.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/interleaved-charsets-all.nex' -> `./tests/data/chars/interleaved-charsets-all.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/interleaved-charsets-c1.nex' -> `./tests/data/chars/interleaved-charsets-c1.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/interleaved-charsets-c2.nex' -> `./tests/data/chars/interleaved-charsets-c2.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/interleaved-charsets-c3.nex' -> `./tests/data/chars/interleaved-charsets-c3.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/orti.nex' -> `./tests/data/chars/orti.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/primates.chars.csv' -> `./tests/data/chars/primates.chars.csv'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/primates.chars.fasta' -> `./tests/data/chars/primates.chars.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/primates.chars.interleaved.nexus' -> `./tests/data/chars/primates.chars.interleaved.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/primates.chars.nexus' -> `./tests/data/chars/primates.chars.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/primates.chars.simple.interleaved.nexus' -> `./tests/data/chars/primates.chars.simple.interleaved.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/primates.chars.simple.nexus' -> `./tests/data/chars/primates.chars.simple.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/primates.chars.subsets-1stpos.nexus' -> `./tests/data/chars/primates.chars.subsets-1stpos.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/primates.chars.subsets-2ndpos.nexus' -> `./tests/data/chars/primates.chars.subsets-2ndpos.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/primates.chars.subsets-3rdpos.nexus' -> `./tests/data/chars/primates.chars.subsets-3rdpos.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/primates.chars.subsets-all.nexus' -> `./tests/data/chars/primates.chars.subsets-all.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/primates.chars.subsets-coding.nexus' -> `./tests/data/chars/primates.chars.subsets-coding.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/primates.chars.subsets-noncoding.nexus' -> `./tests/data/chars/primates.chars.subsets-noncoding.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/pythonidae.chars.beast.calibrated.xml' -> `./tests/data/chars/pythonidae.chars.beast.calibrated.xml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/pythonidae.chars.beast.uncalibrated.xml' -> `./tests/data/chars/pythonidae.chars.beast.uncalibrated.xml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/pythonidae.chars.fasta' -> `./tests/data/chars/pythonidae.chars.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/pythonidae.chars.interleaved.nexus' -> `./tests/data/chars/pythonidae.chars.interleaved.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/pythonidae.chars.nexus' -> `./tests/data/chars/pythonidae.chars.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/pythonidae.chars.phylip' -> `./tests/data/chars/pythonidae.chars.phylip'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/pythonidae.chars.txt' -> `./tests/data/chars/pythonidae.chars.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/pythonidae_continuous.chars.nexml' -> `./tests/data/chars/pythonidae_continuous.chars.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/pythonidae_continuous.chars.nexus' -> `./tests/data/chars/pythonidae_continuous.chars.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/pythonidae_continuous.chars.txt' -> `./tests/data/chars/pythonidae_continuous.chars.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_01.data.dna.fasta' -> `./tests/data/chars/sfs_test_single_pop_100x500_01.data.dna.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_01.data.std.fasta' -> `./tests/data/chars/sfs_test_single_pop_100x500_01.data.std.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_01.sfs.folded.txt' -> `./tests/data/chars/sfs_test_single_pop_100x500_01.sfs.folded.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_01.sfs.unfolded.txt' -> `./tests/data/chars/sfs_test_single_pop_100x500_01.sfs.unfolded.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_02.data.dna.fasta' -> `./tests/data/chars/sfs_test_single_pop_100x500_02.data.dna.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_02.data.std.fasta' -> `./tests/data/chars/sfs_test_single_pop_100x500_02.data.std.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_02.sfs.folded.txt' -> `./tests/data/chars/sfs_test_single_pop_100x500_02.sfs.folded.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_02.sfs.unfolded.txt' -> `./tests/data/chars/sfs_test_single_pop_100x500_02.sfs.unfolded.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_03.data.dna.fasta' -> `./tests/data/chars/sfs_test_single_pop_100x500_03.data.dna.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_03.data.std.fasta' -> `./tests/data/chars/sfs_test_single_pop_100x500_03.data.std.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_03.sfs.folded.txt' -> `./tests/data/chars/sfs_test_single_pop_100x500_03.sfs.folded.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_03.sfs.unfolded.txt' -> `./tests/data/chars/sfs_test_single_pop_100x500_03.sfs.unfolded.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_04.data.dna.fasta' -> `./tests/data/chars/sfs_test_single_pop_100x500_04.data.dna.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_04.data.std.fasta' -> `./tests/data/chars/sfs_test_single_pop_100x500_04.data.std.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_04.sfs.folded.txt' -> `./tests/data/chars/sfs_test_single_pop_100x500_04.sfs.folded.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_04.sfs.unfolded.txt' -> `./tests/data/chars/sfs_test_single_pop_100x500_04.sfs.unfolded.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_05.data.dna.fasta' -> `./tests/data/chars/sfs_test_single_pop_100x500_05.data.dna.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_05.data.std.fasta' -> `./tests/data/chars/sfs_test_single_pop_100x500_05.data.std.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_05.sfs.folded.txt' -> `./tests/data/chars/sfs_test_single_pop_100x500_05.sfs.folded.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_05.sfs.unfolded.txt' -> `./tests/data/chars/sfs_test_single_pop_100x500_05.sfs.unfolded.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_06.data.dna.fasta' -> `./tests/data/chars/sfs_test_single_pop_100x500_06.data.dna.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_06.data.std.fasta' -> `./tests/data/chars/sfs_test_single_pop_100x500_06.data.std.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_06.sfs.folded.txt' -> `./tests/data/chars/sfs_test_single_pop_100x500_06.sfs.folded.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_06.sfs.unfolded.txt' -> `./tests/data/chars/sfs_test_single_pop_100x500_06.sfs.unfolded.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_07.data.dna.fasta' -> `./tests/data/chars/sfs_test_single_pop_100x500_07.data.dna.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_07.data.std.fasta' -> `./tests/data/chars/sfs_test_single_pop_100x500_07.data.std.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_07.sfs.folded.txt' -> `./tests/data/chars/sfs_test_single_pop_100x500_07.sfs.folded.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_07.sfs.unfolded.txt' -> `./tests/data/chars/sfs_test_single_pop_100x500_07.sfs.unfolded.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_08.data.dna.fasta' -> `./tests/data/chars/sfs_test_single_pop_100x500_08.data.dna.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_08.data.std.fasta' -> `./tests/data/chars/sfs_test_single_pop_100x500_08.data.std.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_08.sfs.folded.txt' -> `./tests/data/chars/sfs_test_single_pop_100x500_08.sfs.folded.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_08.sfs.unfolded.txt' -> `./tests/data/chars/sfs_test_single_pop_100x500_08.sfs.unfolded.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_09.data.dna.fasta' -> `./tests/data/chars/sfs_test_single_pop_100x500_09.data.dna.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_09.data.std.fasta' -> `./tests/data/chars/sfs_test_single_pop_100x500_09.data.std.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_09.sfs.folded.txt' -> `./tests/data/chars/sfs_test_single_pop_100x500_09.sfs.folded.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_09.sfs.unfolded.txt' -> `./tests/data/chars/sfs_test_single_pop_100x500_09.sfs.unfolded.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_10.data.dna.fasta' -> `./tests/data/chars/sfs_test_single_pop_100x500_10.data.dna.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_10.data.std.fasta' -> `./tests/data/chars/sfs_test_single_pop_100x500_10.data.std.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_10.sfs.folded.txt' -> `./tests/data/chars/sfs_test_single_pop_100x500_10.sfs.folded.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_100x500_10.sfs.unfolded.txt' -> `./tests/data/chars/sfs_test_single_pop_100x500_10.sfs.unfolded.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_10x10.data.dna.fasta' -> `./tests/data/chars/sfs_test_single_pop_10x10.data.dna.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_10x10.data.std.fasta' -> `./tests/data/chars/sfs_test_single_pop_10x10.data.std.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_10x10.sfs.folded.txt' -> `./tests/data/chars/sfs_test_single_pop_10x10.sfs.folded.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/sfs_test_single_pop_10x10.sfs.unfolded.txt' -> `./tests/data/chars/sfs_test_single_pop_10x10.sfs.unfolded.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-continuous.as_cells.nexml' -> `./tests/data/chars/standard-test-chars-continuous.as_cells.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-continuous.as_seqs.nexml' -> `./tests/data/chars/standard-test-chars-continuous.as_seqs.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-continuous.interleaved.phylip' -> `./tests/data/chars/standard-test-chars-continuous.interleaved.phylip'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-continuous.mesquite.interleaved.nexus' -> `./tests/data/chars/standard-test-chars-continuous.mesquite.interleaved.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-continuous.mesquite.nexus' -> `./tests/data/chars/standard-test-chars-continuous.mesquite.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-continuous.relaxed.phylip' -> `./tests/data/chars/standard-test-chars-continuous.relaxed.phylip'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-dna.as_cells.nexml' -> `./tests/data/chars/standard-test-chars-dna.as_cells.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-dna.as_seqs.nexml' -> `./tests/data/chars/standard-test-chars-dna.as_seqs.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-dna.basic.nexus' -> `./tests/data/chars/standard-test-chars-dna.basic.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-dna.fasta' -> `./tests/data/chars/standard-test-chars-dna.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-dna.interleaved.nexus' -> `./tests/data/chars/standard-test-chars-dna.interleaved.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-dna.matchchar.nexus' -> `./tests/data/chars/standard-test-chars-dna.matchchar.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-dna.multi.nexus' -> `./tests/data/chars/standard-test-chars-dna.multi.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-dna.relaxed.phylip' -> `./tests/data/chars/standard-test-chars-dna.relaxed.phylip'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-dna.simple.nexus' -> `./tests/data/chars/standard-test-chars-dna.simple.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-generic.as_cells.nexml' -> `./tests/data/chars/standard-test-chars-generic.as_cells.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-generic.as_seqs.nexml' -> `./tests/data/chars/standard-test-chars-generic.as_seqs.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-generic.basic.nexus' -> `./tests/data/chars/standard-test-chars-generic.basic.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-generic.dotted.nexus' -> `./tests/data/chars/standard-test-chars-generic.dotted.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-generic.interleaved.nexus' -> `./tests/data/chars/standard-test-chars-generic.interleaved.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-generic.relaxed.phylip' -> `./tests/data/chars/standard-test-chars-generic.relaxed.phylip'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-generic.simple.nexus' -> `./tests/data/chars/standard-test-chars-generic.simple.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-multiple-char-blocks.1.basic.nexus' -> `./tests/data/chars/standard-test-chars-multiple-char-blocks.1.basic.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-multiple.as_cells.nexml' -> `./tests/data/chars/standard-test-chars-multiple.as_cells.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-multiple.as_seqs.nexml' -> `./tests/data/chars/standard-test-chars-multiple.as_seqs.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-protein.as_cells.nexml' -> `./tests/data/chars/standard-test-chars-protein.as_cells.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-protein.as_seqs.nexml' -> `./tests/data/chars/standard-test-chars-protein.as_seqs.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-protein.basic.nexus' -> `./tests/data/chars/standard-test-chars-protein.basic.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-protein.fasta' -> `./tests/data/chars/standard-test-chars-protein.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-protein.interleaved.nexus' -> `./tests/data/chars/standard-test-chars-protein.interleaved.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-protein.matchchar.nexus' -> `./tests/data/chars/standard-test-chars-protein.matchchar.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-protein.multi.nexus' -> `./tests/data/chars/standard-test-chars-protein.multi.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-protein.relaxed.phylip' -> `./tests/data/chars/standard-test-chars-protein.relaxed.phylip'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-protein.simple.nexus' -> `./tests/data/chars/standard-test-chars-protein.simple.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-rna.as_cells.nexml' -> `./tests/data/chars/standard-test-chars-rna.as_cells.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-rna.as_seqs.nexml' -> `./tests/data/chars/standard-test-chars-rna.as_seqs.nexml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-rna.basic.nexus' -> `./tests/data/chars/standard-test-chars-rna.basic.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-rna.fasta' -> `./tests/data/chars/standard-test-chars-rna.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-rna.interleaved.nexus' -> `./tests/data/chars/standard-test-chars-rna.interleaved.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-rna.matchchar.nexus' -> `./tests/data/chars/standard-test-chars-rna.matchchar.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-rna.multi.nexus' -> `./tests/data/chars/standard-test-chars-rna.multi.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-rna.relaxed.phylip' -> `./tests/data/chars/standard-test-chars-rna.relaxed.phylip'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/tests/data/chars/standard-test-chars-rna.simple.nexus' -> `./tests/data/chars/standard-test-chars-rna.simple.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/__init__.py' -> `./src/dendropy/__init__.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/__main__.py' -> `./src/dendropy/__main__.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/utility/__init__.py' -> `./src/dendropy/utility/__init__.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/utility/bibtex.py' -> `./src/dendropy/utility/bibtex.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/utility/bitprocessing.py' -> `./src/dendropy/utility/bitprocessing.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/utility/cli.py' -> `./src/dendropy/utility/cli.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/utility/constants.py' -> `./src/dendropy/utility/constants.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/utility/container.py' -> `./src/dendropy/utility/container.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/utility/debug.py' -> `./src/dendropy/utility/debug.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/utility/deprecate.py' -> `./src/dendropy/utility/deprecate.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/utility/error.py' -> `./src/dendropy/utility/error.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/utility/filesys.py' -> `./src/dendropy/utility/filesys.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/utility/messaging.py' -> `./src/dendropy/utility/messaging.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/utility/metavar.py' -> `./src/dendropy/utility/metavar.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/utility/processio.py' -> `./src/dendropy/utility/processio.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/utility/terminal.py' -> `./src/dendropy/utility/terminal.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/utility/textprocessing.py' -> `./src/dendropy/utility/textprocessing.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/utility/timeprocessing.py' -> `./src/dendropy/utility/timeprocessing.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/utility/urlio.py' -> `./src/dendropy/utility/urlio.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/utility/vcsinfo.py' -> `./src/dendropy/utility/vcsinfo.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/utility/libexec/__init__.py' -> `./src/dendropy/utility/libexec/__init__.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/utility/libexec/rsubprocess.R' -> `./src/dendropy/utility/libexec/rsubprocess.R'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/simulate/__init__.py' -> `./src/dendropy/simulate/__init__.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/simulate/charsim.py' -> `./src/dendropy/simulate/charsim.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/simulate/popgensim.py' -> `./src/dendropy/simulate/popgensim.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/simulate/treesim.py' -> `./src/dendropy/simulate/treesim.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/model/__init__.py' -> `./src/dendropy/model/__init__.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/model/birthdeath.py' -> `./src/dendropy/model/birthdeath.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/model/coalescent.py' -> `./src/dendropy/model/coalescent.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/model/continuous.py' -> `./src/dendropy/model/continuous.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/model/discrete.py' -> `./src/dendropy/model/discrete.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/model/multispeciescoalescent.py' -> `./src/dendropy/model/multispeciescoalescent.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/model/parsimony.py' -> `./src/dendropy/model/parsimony.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/model/protractedspeciation.py' -> `./src/dendropy/model/protractedspeciation.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/model/reconcile.py' -> `./src/dendropy/model/reconcile.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/model/treeshape.py' -> `./src/dendropy/model/treeshape.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/mathlib/__init__.py' -> `./src/dendropy/mathlib/__init__.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/mathlib/mathfn.py' -> `./src/dendropy/mathlib/mathfn.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/mathlib/probability.py' -> `./src/dendropy/mathlib/probability.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/mathlib/statistics.py' -> `./src/dendropy/mathlib/statistics.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/legacy/__init__.py' -> `./src/dendropy/legacy/__init__.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/legacy/coalescent.py' -> `./src/dendropy/legacy/coalescent.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/legacy/continuous.py' -> `./src/dendropy/legacy/continuous.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/legacy/ncbi.py' -> `./src/dendropy/legacy/ncbi.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/legacy/popgensim.py' -> `./src/dendropy/legacy/popgensim.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/legacy/popgenstat.py' -> `./src/dendropy/legacy/popgenstat.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/legacy/reconcile.py' -> `./src/dendropy/legacy/reconcile.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/legacy/seqmodel.py' -> `./src/dendropy/legacy/seqmodel.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/legacy/seqsim.py' -> `./src/dendropy/legacy/seqsim.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/legacy/treecalc.py' -> `./src/dendropy/legacy/treecalc.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/legacy/treemanip.py' -> `./src/dendropy/legacy/treemanip.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/legacy/treesim.py' -> `./src/dendropy/legacy/treesim.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/legacy/treesplit.py' -> `./src/dendropy/legacy/treesplit.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/legacy/treesum.py' -> `./src/dendropy/legacy/treesum.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/interop/__init__.py' -> `./src/dendropy/interop/__init__.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/interop/ape.py' -> `./src/dendropy/interop/ape.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/interop/biopython.py' -> `./src/dendropy/interop/biopython.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/interop/entrez.py' -> `./src/dendropy/interop/entrez.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/interop/ete.py' -> `./src/dendropy/interop/ete.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/interop/gbif.py' -> `./src/dendropy/interop/gbif.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/interop/genbank.py' -> `./src/dendropy/interop/genbank.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/interop/itol.py' -> `./src/dendropy/interop/itol.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/interop/muscle.py' -> `./src/dendropy/interop/muscle.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/interop/paup.py' -> `./src/dendropy/interop/paup.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/interop/raxml.py' -> `./src/dendropy/interop/raxml.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/interop/rspr.py' -> `./src/dendropy/interop/rspr.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/interop/rstats.py' -> `./src/dendropy/interop/rstats.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/interop/seqgen.py' -> `./src/dendropy/interop/seqgen.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/datamodel/__init__.py' -> `./src/dendropy/datamodel/__init__.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/datamodel/basemodel.py' -> `./src/dendropy/datamodel/basemodel.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/datamodel/charmatrixmodel.py' -> `./src/dendropy/datamodel/charmatrixmodel.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/datamodel/charstatemodel.py' -> `./src/dendropy/datamodel/charstatemodel.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/datamodel/datasetmodel.py' -> `./src/dendropy/datamodel/datasetmodel.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/datamodel/taxonmodel.py' -> `./src/dendropy/datamodel/taxonmodel.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/datamodel/treecollectionmodel.py' -> `./src/dendropy/datamodel/treecollectionmodel.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/datamodel/treemodel.py' -> `./src/dendropy/datamodel/treemodel.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/dataio/__init__.py' -> `./src/dendropy/dataio/__init__.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/dataio/fastareader.py' -> `./src/dendropy/dataio/fastareader.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/dataio/fastawriter.py' -> `./src/dendropy/dataio/fastawriter.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/dataio/ioservice.py' -> `./src/dendropy/dataio/ioservice.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/dataio/multiphylipreader.py' -> `./src/dendropy/dataio/multiphylipreader.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/dataio/newick.py' -> `./src/dendropy/dataio/newick.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/dataio/newickreader.py' -> `./src/dendropy/dataio/newickreader.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/dataio/newickwriter.py' -> `./src/dendropy/dataio/newickwriter.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/dataio/newickyielder.py' -> `./src/dendropy/dataio/newickyielder.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/dataio/nexmlreader.py' -> `./src/dendropy/dataio/nexmlreader.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/dataio/nexmlwriter.py' -> `./src/dendropy/dataio/nexmlwriter.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/dataio/nexmlyielder.py' -> `./src/dendropy/dataio/nexmlyielder.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/dataio/nexusprocessing.py' -> `./src/dendropy/dataio/nexusprocessing.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/dataio/nexusreader.py' -> `./src/dendropy/dataio/nexusreader.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/dataio/nexuswriter.py' -> `./src/dendropy/dataio/nexuswriter.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/dataio/nexusyielder.py' -> `./src/dendropy/dataio/nexusyielder.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/dataio/phylipreader.py' -> `./src/dendropy/dataio/phylipreader.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/dataio/phylipwriter.py' -> `./src/dendropy/dataio/phylipwriter.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/dataio/tokenizer.py' -> `./src/dendropy/dataio/tokenizer.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/dataio/xmlprocessing.py' -> `./src/dendropy/dataio/xmlprocessing.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/calculate/__init__.py' -> `./src/dendropy/calculate/__init__.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/calculate/combinatorics.py' -> `./src/dendropy/calculate/combinatorics.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/calculate/mathfn.py' -> `./src/dendropy/calculate/mathfn.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/calculate/phylogeneticdistance.py' -> `./src/dendropy/calculate/phylogeneticdistance.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/calculate/popgenstat.py' -> `./src/dendropy/calculate/popgenstat.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/calculate/probability.py' -> `./src/dendropy/calculate/probability.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/calculate/profiledistance.py' -> `./src/dendropy/calculate/profiledistance.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/calculate/statistics.py' -> `./src/dendropy/calculate/statistics.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/calculate/treecompare.py' -> `./src/dendropy/calculate/treecompare.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/calculate/treemeasure.py' -> `./src/dendropy/calculate/treemeasure.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/calculate/treescore.py' -> `./src/dendropy/calculate/treescore.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/src/dendropy/calculate/treesum.py' -> `./src/dendropy/calculate/treesum.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/notes/datamodel-copying-conventions.txt' -> `./notes/datamodel-copying-conventions.txt'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/notes/roadmap.md' -> `./notes/roadmap.md'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/.gitignore' -> `./docs/.gitignore'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/Makefile' -> `./docs/Makefile'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/make.bat' -> `./docs/make.bat'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/netlify.toml' -> `./docs/netlify.toml'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/acknowledgements.inc' -> `./docs/source/acknowledgements.inc'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/changes.rst' -> `./docs/source/changes.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/citation.inc' -> `./docs/source/citation.inc'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/conf.py' -> `./docs/source/conf.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/downloading.rst' -> `./docs/source/downloading.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/glossary.rst' -> `./docs/source/glossary.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/index.rst' -> `./docs/source/index.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/license.inc' -> `./docs/source/license.inc'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/migration.rst' -> `./docs/source/migration.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/news.rst' -> `./docs/source/news.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/fasta.rst' -> `./docs/source/schemas/fasta.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/index.rst' -> `./docs/source/schemas/index.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/newick.rst' -> `./docs/source/schemas/newick.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/nexml.rst' -> `./docs/source/schemas/nexml.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/nexus.rst' -> `./docs/source/schemas/nexus.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/phylip.rst' -> `./docs/source/schemas/phylip.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/fasta_as_string.py' -> `./docs/source/schemas/interfaces/fasta_as_string.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/fasta_dataset_get.py' -> `./docs/source/schemas/interfaces/fasta_dataset_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/fasta_dataset_read.py' -> `./docs/source/schemas/interfaces/fasta_dataset_read.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/fasta_dnacharactermatrix_get.py' -> `./docs/source/schemas/interfaces/fasta_dnacharactermatrix_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/fasta_infinitesitescharactermatrix_get.py' -> `./docs/source/schemas/interfaces/fasta_infinitesitescharactermatrix_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/fasta_proteincharactermatrix_get.py' -> `./docs/source/schemas/interfaces/fasta_proteincharactermatrix_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/fasta_restrictionsitescharactermatrix_get.py' -> `./docs/source/schemas/interfaces/fasta_restrictionsitescharactermatrix_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/fasta_rnacharactermatrix_get.py' -> `./docs/source/schemas/interfaces/fasta_rnacharactermatrix_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/fasta_standardcharactermatrix_get.py' -> `./docs/source/schemas/interfaces/fasta_standardcharactermatrix_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/fasta_write.py' -> `./docs/source/schemas/interfaces/fasta_write.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/newick_as_string.py' -> `./docs/source/schemas/interfaces/newick_as_string.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/newick_dataset_get.py' -> `./docs/source/schemas/interfaces/newick_dataset_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/newick_dataset_read.py' -> `./docs/source/schemas/interfaces/newick_dataset_read.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/newick_tree_get.py' -> `./docs/source/schemas/interfaces/newick_tree_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/newick_tree_get_from_path.py' -> `./docs/source/schemas/interfaces/newick_tree_get_from_path.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/newick_tree_get_from_stream.py' -> `./docs/source/schemas/interfaces/newick_tree_get_from_stream.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/newick_treearray_read.py' -> `./docs/source/schemas/interfaces/newick_treearray_read.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/newick_treelist_get.py' -> `./docs/source/schemas/interfaces/newick_treelist_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/newick_treelist_read.py' -> `./docs/source/schemas/interfaces/newick_treelist_read.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/newick_write.py' -> `./docs/source/schemas/interfaces/newick_write.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexml_chars_as_string.py' -> `./docs/source/schemas/interfaces/nexml_chars_as_string.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexml_chars_write.py' -> `./docs/source/schemas/interfaces/nexml_chars_write.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexml_dataset_as_string.py' -> `./docs/source/schemas/interfaces/nexml_dataset_as_string.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexml_dataset_get.py' -> `./docs/source/schemas/interfaces/nexml_dataset_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexml_dataset_read.py' -> `./docs/source/schemas/interfaces/nexml_dataset_read.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexml_dataset_write.py' -> `./docs/source/schemas/interfaces/nexml_dataset_write.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexml_dnacharactermatrix_get.py' -> `./docs/source/schemas/interfaces/nexml_dnacharactermatrix_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexml_infinitesitescharactermatrix_get.py' -> `./docs/source/schemas/interfaces/nexml_infinitesitescharactermatrix_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexml_proteincharactermatrix_get.py' -> `./docs/source/schemas/interfaces/nexml_proteincharactermatrix_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexml_restrictionsitescharactermatrix_get.py' -> `./docs/source/schemas/interfaces/nexml_restrictionsitescharactermatrix_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexml_rnacharactermatrix_get.py' -> `./docs/source/schemas/interfaces/nexml_rnacharactermatrix_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexml_standardcharactermatrix_get.py' -> `./docs/source/schemas/interfaces/nexml_standardcharactermatrix_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexml_tree_get.py' -> `./docs/source/schemas/interfaces/nexml_tree_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexml_treearray_get.py' -> `./docs/source/schemas/interfaces/nexml_treearray_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexml_treearray_read.py' -> `./docs/source/schemas/interfaces/nexml_treearray_read.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexml_treelist_get.py' -> `./docs/source/schemas/interfaces/nexml_treelist_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexml_treelist_read.py' -> `./docs/source/schemas/interfaces/nexml_treelist_read.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexml_trees_as_string.py' -> `./docs/source/schemas/interfaces/nexml_trees_as_string.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexml_trees_write.py' -> `./docs/source/schemas/interfaces/nexml_trees_write.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexus_chars_as_string.py' -> `./docs/source/schemas/interfaces/nexus_chars_as_string.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexus_chars_write.py' -> `./docs/source/schemas/interfaces/nexus_chars_write.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexus_dataset_as_string.py' -> `./docs/source/schemas/interfaces/nexus_dataset_as_string.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexus_dataset_get.py' -> `./docs/source/schemas/interfaces/nexus_dataset_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexus_dataset_read.py' -> `./docs/source/schemas/interfaces/nexus_dataset_read.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexus_dataset_write.py' -> `./docs/source/schemas/interfaces/nexus_dataset_write.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexus_dnacharactermatrix_get.py' -> `./docs/source/schemas/interfaces/nexus_dnacharactermatrix_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexus_infinitesitescharactermatrix_get.py' -> `./docs/source/schemas/interfaces/nexus_infinitesitescharactermatrix_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexus_proteincharactermatrix_get.py' -> `./docs/source/schemas/interfaces/nexus_proteincharactermatrix_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexus_restrictionsitescharactermatrix_get.py' -> `./docs/source/schemas/interfaces/nexus_restrictionsitescharactermatrix_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexus_rnacharactermatrix_get.py' -> `./docs/source/schemas/interfaces/nexus_rnacharactermatrix_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexus_standardcharactermatrix_get.py' -> `./docs/source/schemas/interfaces/nexus_standardcharactermatrix_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexus_tree_get.py' -> `./docs/source/schemas/interfaces/nexus_tree_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexus_tree_get_from_path.py' -> `./docs/source/schemas/interfaces/nexus_tree_get_from_path.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexus_tree_get_from_stream.py' -> `./docs/source/schemas/interfaces/nexus_tree_get_from_stream.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexus_treearray_read.py' -> `./docs/source/schemas/interfaces/nexus_treearray_read.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexus_treelist_get.py' -> `./docs/source/schemas/interfaces/nexus_treelist_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexus_treelist_read.py' -> `./docs/source/schemas/interfaces/nexus_treelist_read.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexus_trees_as_string.py' -> `./docs/source/schemas/interfaces/nexus_trees_as_string.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/nexus_trees_write.py' -> `./docs/source/schemas/interfaces/nexus_trees_write.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/phylip_as_string.py' -> `./docs/source/schemas/interfaces/phylip_as_string.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/phylip_dataset_get.py' -> `./docs/source/schemas/interfaces/phylip_dataset_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/phylip_dataset_read.py' -> `./docs/source/schemas/interfaces/phylip_dataset_read.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/phylip_dnacharactermatrix_get.py' -> `./docs/source/schemas/interfaces/phylip_dnacharactermatrix_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/phylip_infinitesitescharactermatrix_get.py' -> `./docs/source/schemas/interfaces/phylip_infinitesitescharactermatrix_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/phylip_proteincharactermatrix_get.py' -> `./docs/source/schemas/interfaces/phylip_proteincharactermatrix_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/phylip_restrictionsitescharactermatrix_get.py' -> `./docs/source/schemas/interfaces/phylip_restrictionsitescharactermatrix_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/phylip_rnacharactermatrix_get.py' -> `./docs/source/schemas/interfaces/phylip_rnacharactermatrix_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/phylip_standardcharactermatrix_get.py' -> `./docs/source/schemas/interfaces/phylip_standardcharactermatrix_get.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/schemas/interfaces/phylip_write.py' -> `./docs/source/schemas/interfaces/phylip_write.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/programs/index.rst' -> `./docs/source/programs/index.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/programs/sumtrees.rst' -> `./docs/source/programs/sumtrees.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/primer/bipartitions.rst' -> `./docs/source/primer/bipartitions.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/primer/chars.rst' -> `./docs/source/primer/chars.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/primer/converting.rst' -> `./docs/source/primer/converting.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/primer/dataobjects.rst' -> `./docs/source/primer/dataobjects.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/primer/datasets.rst' -> `./docs/source/primer/datasets.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/primer/genbank.rst' -> `./docs/source/primer/genbank.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/primer/index.rst' -> `./docs/source/primer/index.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/primer/paup.rst' -> `./docs/source/primer/paup.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/primer/phylogenetic_character_analyses.rst' -> `./docs/source/primer/phylogenetic_character_analyses.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/primer/phylogenetic_distances.rst' -> `./docs/source/primer/phylogenetic_distances.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/primer/popgenstats.rst' -> `./docs/source/primer/popgenstats.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/primer/raxml.rst' -> `./docs/source/primer/raxml.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/primer/reading_and_writing.rst' -> `./docs/source/primer/reading_and_writing.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/primer/seqgen.rst' -> `./docs/source/primer/seqgen.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/primer/taxa.rst' -> `./docs/source/primer/taxa.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/primer/taxa_partitions.rst' -> `./docs/source/primer/taxa_partitions.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/primer/treecollections.rst' -> `./docs/source/primer/treecollections.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/primer/treemanips.rst' -> `./docs/source/primer/treemanips.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/primer/trees.rst' -> `./docs/source/primer/trees.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/primer/treesims.rst' -> `./docs/source/primer/treesims.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/primer/treestats.rst' -> `./docs/source/primer/treestats.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/primer/working_with_metadata_annotations.rst' -> `./docs/source/primer/working_with_metadata_annotations.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/library/basemodel.rst' -> `./docs/source/library/basemodel.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/library/birthdeath.rst' -> `./docs/source/library/birthdeath.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/library/charmatrixmodel.rst' -> `./docs/source/library/charmatrixmodel.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/library/charstatemodel.rst' -> `./docs/source/library/charstatemodel.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/library/coalescent.rst' -> `./docs/source/library/coalescent.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/library/continuous.rst' -> `./docs/source/library/continuous.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/library/datasetmodel.rst' -> `./docs/source/library/datasetmodel.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/library/discrete.rst' -> `./docs/source/library/discrete.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/library/index.rst' -> `./docs/source/library/index.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/library/parsimony.rst' -> `./docs/source/library/parsimony.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/library/phylogeneticdistance.rst' -> `./docs/source/library/phylogeneticdistance.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/library/popgensim.rst' -> `./docs/source/library/popgensim.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/library/popgenstat.rst' -> `./docs/source/library/popgenstat.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/library/probability.rst' -> `./docs/source/library/probability.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/library/protractedspeciation.rst' -> `./docs/source/library/protractedspeciation.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/library/reconcile.rst' -> `./docs/source/library/reconcile.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/library/statistics.rst' -> `./docs/source/library/statistics.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/library/taxonmodel.rst' -> `./docs/source/library/taxonmodel.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/library/treecollectionmodel.rst' -> `./docs/source/library/treecollectionmodel.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/library/treecompare.rst' -> `./docs/source/library/treecompare.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/library/treemeasure.rst' -> `./docs/source/library/treemeasure.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/library/treemodel.rst' -> `./docs/source/library/treemodel.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/library/treescore.rst' -> `./docs/source/library/treescore.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/library/treeshape.rst' -> `./docs/source/library/treeshape.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/library/treesim.rst' -> `./docs/source/library/treesim.rst'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/bdtree_multi1.py' -> `./docs/source/examples/bdtree_multi1.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/bdtree_multi2.py' -> `./docs/source/examples/bdtree_multi2.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/bibtex_annotations1.py' -> `./docs/source/examples/bibtex_annotations1.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/bibtex_annotations2.py' -> `./docs/source/examples/bibtex_annotations2.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/bibtex_annotations3.py' -> `./docs/source/examples/bibtex_annotations3.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/build_tree_programmatically.py' -> `./docs/source/examples/build_tree_programmatically.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/char_mat_concat.py' -> `./docs/source/examples/char_mat_concat.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/char_mat_concat2.py' -> `./docs/source/examples/char_mat_concat2.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/chars_access1.py' -> `./docs/source/examples/chars_access1.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/chars_access2.py' -> `./docs/source/examples/chars_access2.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/chars_access3.py' -> `./docs/source/examples/chars_access3.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/chars_access4.py' -> `./docs/source/examples/chars_access4.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/contained_coalescent1.py' -> `./docs/source/examples/contained_coalescent1.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/contained_coalescent2.py' -> `./docs/source/examples/contained_coalescent2.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/ds1.py' -> `./docs/source/examples/ds1.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/ds2.py' -> `./docs/source/examples/ds2.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/ds4.py' -> `./docs/source/examples/ds4.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/ds5.py' -> `./docs/source/examples/ds5.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/dsrw1.py' -> `./docs/source/examples/dsrw1.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/dynamic_annotations1.py' -> `./docs/source/examples/dynamic_annotations1.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/euctree.py' -> `./docs/source/examples/euctree.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/find_taxon_node1.py' -> `./docs/source/examples/find_taxon_node1.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/find_taxon_node2.py' -> `./docs/source/examples/find_taxon_node2.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/hiv1.nexus' -> `./docs/source/examples/hiv1.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/ladderize.py' -> `./docs/source/examples/ladderize.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/ltt.py' -> `./docs/source/examples/ltt.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/majrule.py' -> `./docs/source/examples/majrule.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/mcct.py' -> `./docs/source/examples/mcct.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/mrca.py' -> `./docs/source/examples/mrca.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/mrca2.py' -> `./docs/source/examples/mrca2.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/node_ages1.py' -> `./docs/source/examples/node_ages1.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/orti1994.nex' -> `./docs/source/examples/orti1994.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/paup_estimate_model.py' -> `./docs/source/examples/paup_estimate_model.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/paup_estimate_tree_ml.py' -> `./docs/source/examples/paup_estimate_tree_ml.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/paup_estimate_tree_nj.py' -> `./docs/source/examples/paup_estimate_tree_nj.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pbhg.py' -> `./docs/source/examples/pbhg.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pdm.py' -> `./docs/source/examples/pdm.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pdm_mpd0.py' -> `./docs/source/examples/pdm_mpd0.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pdm_mpd1.py' -> `./docs/source/examples/pdm_mpd1.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pdm_nj_tree.py' -> `./docs/source/examples/pdm_nj_tree.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pdm_ses1.py' -> `./docs/source/examples/pdm_ses1.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pdm_ses2.py' -> `./docs/source/examples/pdm_ses2.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pdm_ses3.py' -> `./docs/source/examples/pdm_ses3.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pdm_tns1.py' -> `./docs/source/examples/pdm_tns1.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pdm_upgma_tree.py' -> `./docs/source/examples/pdm_upgma_tree.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pgstats1.py' -> `./docs/source/examples/pgstats1.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pic1.py' -> `./docs/source/examples/pic1.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pic2.py' -> `./docs/source/examples/pic2.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pic3.py' -> `./docs/source/examples/pic3.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pic4.py' -> `./docs/source/examples/pic4.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pic_annotated.py' -> `./docs/source/examples/pic_annotated.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/preorder_filtered_edge_iteration.py' -> `./docs/source/examples/preorder_filtered_edge_iteration.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/preorder_filtered_node_iteration.py' -> `./docs/source/examples/preorder_filtered_node_iteration.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/primates.cc.combined.nex' -> `./docs/source/examples/primates.cc.combined.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/primates.cc.nex' -> `./docs/source/examples/primates.cc.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/primates.cc.tre' -> `./docs/source/examples/primates.cc.tre'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/primates.chars.interleaved.nexus' -> `./docs/source/examples/primates.chars.interleaved.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/primates.chars.nexus' -> `./docs/source/examples/primates.chars.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/primates.chars.simple.interleaved.nexus' -> `./docs/source/examples/primates.chars.simple.interleaved.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/primates.chars.simple.nexus' -> `./docs/source/examples/primates.chars.simple.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/primates.chars.subsets-1stpos.nexus' -> `./docs/source/examples/primates.chars.subsets-1stpos.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/primates.chars.subsets-2ndpos.nexus' -> `./docs/source/examples/primates.chars.subsets-2ndpos.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/primates.chars.subsets-3rdpos.nexus' -> `./docs/source/examples/primates.chars.subsets-3rdpos.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/primates.chars.subsets-all.nexus' -> `./docs/source/examples/primates.chars.subsets-all.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/primates.chars.subsets-coding.nexus' -> `./docs/source/examples/primates.chars.subsets-coding.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/primates.chars.subsets-noncoding.nexus' -> `./docs/source/examples/primates.chars.subsets-noncoding.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/prune_taxa_with_labels.py' -> `./docs/source/examples/prune_taxa_with_labels.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pure_kingman1.py' -> `./docs/source/examples/pure_kingman1.py'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pythonidae.beast-mcmc.trees' -> `./docs/source/examples/pythonidae.beast-mcmc.trees'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pythonidae.chars.nexus' -> `./docs/source/examples/pythonidae.chars.nexus'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pythonidae.chars.phylip' -> `./docs/source/examples/pythonidae.chars.phylip'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pythonidae.fasta' -> `./docs/source/examples/pythonidae.fasta'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pythonidae.mb.run1.t' -> `./docs/source/examples/pythonidae.mb.run1.t'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pythonidae.mb.run2.t' -> `./docs/source/examples/pythonidae.mb.run2.t'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pythonidae.mb.run3.t' -> `./docs/source/examples/pythonidae.mb.run3.t'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pythonidae.mb.run4.t' -> `./docs/source/examples/pythonidae.mb.run4.t'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pythonidae.mcmc-con.nex' -> `./docs/source/examples/pythonidae.mcmc-con.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pythonidae.mcmc.nex' -> `./docs/source/examples/pythonidae.mcmc.nex'
`/gnu/store/1jg16kim0nbra10l146f7b0g3vi77003-python-dendropy-4.5.1-checkout/docs/source/examples/pythonidae.mle.nex' -> `./docs/source/examples/pythonidae.mle.nex'
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phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `build'
running "python setup.py" with command "build" and parameters ()
-setup.py: DendroPy version 4.5.1
-setup.py: using setuptools ('/gnu/store/dh5rr8gd148afs3jzijs8i9gfwwi6igz-python-3.9.9/lib/python3.9/site-packages/setuptools/__init__.py')
-setup.py: searching for packages
-setup.py: packages identified:
           - dendropy                
           - dendropy.utility        
           - dendropy.simulate       
           - dendropy.model          
           - dendropy.mathlib        
           - dendropy.legacy         
           - dendropy.interop        
           - dendropy.datamodel      
           - dendropy.dataio         
           - dendropy.calculate      
           - dendropy.utility.libexec
-setup.py: scripts identified:
           - applications/sumtrees/sumtrees.py           
           - applications/sumlabels/sumlabels.py         
           - applications/dendropy-format/dendropy-format
-setup.py: setuptools command extensions are available
running build
running build_py
creating build
creating build/lib
creating build/lib/dendropy
copying src/dendropy/__init__.py -> build/lib/dendropy
copying src/dendropy/__main__.py -> build/lib/dendropy
creating build/lib/dendropy/utility
copying src/dendropy/utility/__init__.py -> build/lib/dendropy/utility
copying src/dendropy/utility/bibtex.py -> build/lib/dendropy/utility
copying src/dendropy/utility/bitprocessing.py -> build/lib/dendropy/utility
copying src/dendropy/utility/cli.py -> build/lib/dendropy/utility
copying src/dendropy/utility/constants.py -> build/lib/dendropy/utility
copying src/dendropy/utility/container.py -> build/lib/dendropy/utility
copying src/dendropy/utility/debug.py -> build/lib/dendropy/utility
copying src/dendropy/utility/deprecate.py -> build/lib/dendropy/utility
copying src/dendropy/utility/error.py -> build/lib/dendropy/utility
copying src/dendropy/utility/filesys.py -> build/lib/dendropy/utility
copying src/dendropy/utility/messaging.py -> build/lib/dendropy/utility
copying src/dendropy/utility/metavar.py -> build/lib/dendropy/utility
copying src/dendropy/utility/processio.py -> build/lib/dendropy/utility
copying src/dendropy/utility/terminal.py -> build/lib/dendropy/utility
copying src/dendropy/utility/textprocessing.py -> build/lib/dendropy/utility
copying src/dendropy/utility/timeprocessing.py -> build/lib/dendropy/utility
copying src/dendropy/utility/urlio.py -> build/lib/dendropy/utility
copying src/dendropy/utility/vcsinfo.py -> build/lib/dendropy/utility
creating build/lib/dendropy/simulate
copying src/dendropy/simulate/__init__.py -> build/lib/dendropy/simulate
copying src/dendropy/simulate/charsim.py -> build/lib/dendropy/simulate
copying src/dendropy/simulate/popgensim.py -> build/lib/dendropy/simulate
copying src/dendropy/simulate/treesim.py -> build/lib/dendropy/simulate
creating build/lib/dendropy/model
copying src/dendropy/model/__init__.py -> build/lib/dendropy/model
copying src/dendropy/model/birthdeath.py -> build/lib/dendropy/model
copying src/dendropy/model/coalescent.py -> build/lib/dendropy/model
copying src/dendropy/model/continuous.py -> build/lib/dendropy/model
copying src/dendropy/model/discrete.py -> build/lib/dendropy/model
copying src/dendropy/model/multispeciescoalescent.py -> build/lib/dendropy/model
copying src/dendropy/model/parsimony.py -> build/lib/dendropy/model
copying src/dendropy/model/protractedspeciation.py -> build/lib/dendropy/model
copying src/dendropy/model/reconcile.py -> build/lib/dendropy/model
copying src/dendropy/model/treeshape.py -> build/lib/dendropy/model
creating build/lib/dendropy/mathlib
copying src/dendropy/mathlib/__init__.py -> build/lib/dendropy/mathlib
copying src/dendropy/mathlib/mathfn.py -> build/lib/dendropy/mathlib
copying src/dendropy/mathlib/probability.py -> build/lib/dendropy/mathlib
copying src/dendropy/mathlib/statistics.py -> build/lib/dendropy/mathlib
creating build/lib/dendropy/legacy
copying src/dendropy/legacy/__init__.py -> build/lib/dendropy/legacy
copying src/dendropy/legacy/coalescent.py -> build/lib/dendropy/legacy
copying src/dendropy/legacy/continuous.py -> build/lib/dendropy/legacy
copying src/dendropy/legacy/ncbi.py -> build/lib/dendropy/legacy
copying src/dendropy/legacy/popgensim.py -> build/lib/dendropy/legacy
copying src/dendropy/legacy/popgenstat.py -> build/lib/dendropy/legacy
copying src/dendropy/legacy/reconcile.py -> build/lib/dendropy/legacy
copying src/dendropy/legacy/seqmodel.py -> build/lib/dendropy/legacy
copying src/dendropy/legacy/seqsim.py -> build/lib/dendropy/legacy
copying src/dendropy/legacy/treecalc.py -> build/lib/dendropy/legacy
copying src/dendropy/legacy/treemanip.py -> build/lib/dendropy/legacy
copying src/dendropy/legacy/treesim.py -> build/lib/dendropy/legacy
copying src/dendropy/legacy/treesplit.py -> build/lib/dendropy/legacy
copying src/dendropy/legacy/treesum.py -> build/lib/dendropy/legacy
creating build/lib/dendropy/interop
copying src/dendropy/interop/__init__.py -> build/lib/dendropy/interop
copying src/dendropy/interop/ape.py -> build/lib/dendropy/interop
copying src/dendropy/interop/biopython.py -> build/lib/dendropy/interop
copying src/dendropy/interop/entrez.py -> build/lib/dendropy/interop
copying src/dendropy/interop/ete.py -> build/lib/dendropy/interop
copying src/dendropy/interop/gbif.py -> build/lib/dendropy/interop
copying src/dendropy/interop/genbank.py -> build/lib/dendropy/interop
copying src/dendropy/interop/itol.py -> build/lib/dendropy/interop
copying src/dendropy/interop/muscle.py -> build/lib/dendropy/interop
copying src/dendropy/interop/paup.py -> build/lib/dendropy/interop
copying src/dendropy/interop/raxml.py -> build/lib/dendropy/interop
copying src/dendropy/interop/rspr.py -> build/lib/dendropy/interop
copying src/dendropy/interop/rstats.py -> build/lib/dendropy/interop
copying src/dendropy/interop/seqgen.py -> build/lib/dendropy/interop
creating build/lib/dendropy/datamodel
copying src/dendropy/datamodel/__init__.py -> build/lib/dendropy/datamodel
copying src/dendropy/datamodel/basemodel.py -> build/lib/dendropy/datamodel
copying src/dendropy/datamodel/charmatrixmodel.py -> build/lib/dendropy/datamodel
copying src/dendropy/datamodel/charstatemodel.py -> build/lib/dendropy/datamodel
copying src/dendropy/datamodel/datasetmodel.py -> build/lib/dendropy/datamodel
copying src/dendropy/datamodel/taxonmodel.py -> build/lib/dendropy/datamodel
copying src/dendropy/datamodel/treecollectionmodel.py -> build/lib/dendropy/datamodel
copying src/dendropy/datamodel/treemodel.py -> build/lib/dendropy/datamodel
creating build/lib/dendropy/dataio
copying src/dendropy/dataio/fastawriter.py -> build/lib/dendropy/dataio
copying src/dendropy/dataio/__init__.py -> build/lib/dendropy/dataio
copying src/dendropy/dataio/fastareader.py -> build/lib/dendropy/dataio
copying src/dendropy/dataio/ioservice.py -> build/lib/dendropy/dataio
copying src/dendropy/dataio/multiphylipreader.py -> build/lib/dendropy/dataio
copying src/dendropy/dataio/newick.py -> build/lib/dendropy/dataio
copying src/dendropy/dataio/newickreader.py -> build/lib/dendropy/dataio
copying src/dendropy/dataio/newickwriter.py -> build/lib/dendropy/dataio
copying src/dendropy/dataio/newickyielder.py -> build/lib/dendropy/dataio
copying src/dendropy/dataio/nexmlreader.py -> build/lib/dendropy/dataio
copying src/dendropy/dataio/nexmlwriter.py -> build/lib/dendropy/dataio
copying src/dendropy/dataio/nexmlyielder.py -> build/lib/dendropy/dataio
copying src/dendropy/dataio/nexusprocessing.py -> build/lib/dendropy/dataio
copying src/dendropy/dataio/nexusreader.py -> build/lib/dendropy/dataio
copying src/dendropy/dataio/nexuswriter.py -> build/lib/dendropy/dataio
copying src/dendropy/dataio/nexusyielder.py -> build/lib/dendropy/dataio
copying src/dendropy/dataio/phylipreader.py -> build/lib/dendropy/dataio
copying src/dendropy/dataio/phylipwriter.py -> build/lib/dendropy/dataio
copying src/dendropy/dataio/tokenizer.py -> build/lib/dendropy/dataio
copying src/dendropy/dataio/xmlprocessing.py -> build/lib/dendropy/dataio
creating build/lib/dendropy/calculate
copying src/dendropy/calculate/__init__.py -> build/lib/dendropy/calculate
copying src/dendropy/calculate/combinatorics.py -> build/lib/dendropy/calculate
copying src/dendropy/calculate/mathfn.py -> build/lib/dendropy/calculate
copying src/dendropy/calculate/phylogeneticdistance.py -> build/lib/dendropy/calculate
copying src/dendropy/calculate/popgenstat.py -> build/lib/dendropy/calculate
copying src/dendropy/calculate/probability.py -> build/lib/dendropy/calculate
copying src/dendropy/calculate/profiledistance.py -> build/lib/dendropy/calculate
copying src/dendropy/calculate/statistics.py -> build/lib/dendropy/calculate
copying src/dendropy/calculate/treecompare.py -> build/lib/dendropy/calculate
copying src/dendropy/calculate/treemeasure.py -> build/lib/dendropy/calculate
copying src/dendropy/calculate/treescore.py -> build/lib/dendropy/calculate
copying src/dendropy/calculate/treesum.py -> build/lib/dendropy/calculate
creating build/lib/dendropy/utility/libexec
copying src/dendropy/utility/libexec/__init__.py -> build/lib/dendropy/utility/libexec
running egg_info
creating src/DendroPy.egg-info
writing src/DendroPy.egg-info/PKG-INFO
writing dependency_links to src/DendroPy.egg-info/dependency_links.txt
writing entry points to src/DendroPy.egg-info/entry_points.txt
writing requirements to src/DendroPy.egg-info/requires.txt
writing top-level names to src/DendroPy.egg-info/top_level.txt
writing manifest file 'src/DendroPy.egg-info/SOURCES.txt'
reading manifest file 'src/DendroPy.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'doc/Makefile'
warning: no files found matching '*' under directory 'doc/source'
warning: no previously-included files matching '.DS_Store' found anywhere in distribution
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '.gitignore' found anywhere in distribution
warning: no previously-included files matching '.gitattributes' found anywhere in distribution
warning: no previously-included files matching '.idea' found anywhere in distribution
warning: no previously-included files matching '__pycache__' found anywhere in distribution
adding license file 'LICENSE.rst'
adding license file 'AUTHORS.rst'
writing manifest file 'src/DendroPy.egg-info/SOURCES.txt'
warning: build_py: byte-compiling is disabled, skipping.

running build_scripts
creating build/scripts-3.9
copying and adjusting applications/sumtrees/sumtrees.py -> build/scripts-3.9
copying and adjusting applications/sumlabels/sumlabels.py -> build/scripts-3.9
copying and adjusting applications/dendropy-format/dendropy-format -> build/scripts-3.9
changing mode of build/scripts-3.9/sumtrees.py from 644 to 755
changing mode of build/scripts-3.9/sumlabels.py from 644 to 755
changing mode of build/scripts-3.9/dendropy-format from 644 to 755
phase `build' succeeded after 0.9 seconds
starting phase `install'
running "python setup.py" with command "install" and parameters ("--prefix=/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1" "--no-compile" "--single-version-externally-managed" "--root=/")
-setup.py: DendroPy version 4.5.1
-setup.py: using setuptools ('/gnu/store/dh5rr8gd148afs3jzijs8i9gfwwi6igz-python-3.9.9/lib/python3.9/site-packages/setuptools/__init__.py')
-setup.py: searching for packages
-setup.py: packages identified:
           - dendropy                
           - dendropy.utility        
           - dendropy.simulate       
           - dendropy.model          
           - dendropy.mathlib        
           - dendropy.legacy         
           - dendropy.interop        
           - dendropy.datamodel      
           - dendropy.dataio         
           - dendropy.calculate      
           - dendropy.utility.libexec
-setup.py: scripts identified:
           - applications/sumtrees/sumtrees.py           
           - applications/sumlabels/sumlabels.py         
           - applications/dendropy-format/dendropy-format
-setup.py: setuptools command extensions are available
running install
running build
running build_py
running egg_info
writing src/DendroPy.egg-info/PKG-INFO
writing dependency_links to src/DendroPy.egg-info/dependency_links.txt
writing entry points to src/DendroPy.egg-info/entry_points.txt
writing requirements to src/DendroPy.egg-info/requires.txt
writing top-level names to src/DendroPy.egg-info/top_level.txt
reading manifest file 'src/DendroPy.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'doc/Makefile'
warning: no files found matching '*' under directory 'doc/source'
warning: no previously-included files matching '.DS_Store' found anywhere in distribution
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '.gitignore' found anywhere in distribution
warning: no previously-included files matching '.gitattributes' found anywhere in distribution
warning: no previously-included files matching '.idea' found anywhere in distribution
warning: no previously-included files matching '__pycache__' found anywhere in distribution
adding license file 'LICENSE.rst'
adding license file 'AUTHORS.rst'
writing manifest file 'src/DendroPy.egg-info/SOURCES.txt'
warning: build_py: byte-compiling is disabled, skipping.

running build_scripts
running install_lib
creating /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1
creating /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib
creating /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9
creating /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages
creating /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy
copying build/lib/dendropy/__init__.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy
copying build/lib/dendropy/__main__.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy
creating /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/utility
copying build/lib/dendropy/utility/__init__.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/utility
copying build/lib/dendropy/utility/bibtex.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/utility
copying build/lib/dendropy/utility/bitprocessing.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/utility
copying build/lib/dendropy/utility/cli.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/utility
copying build/lib/dendropy/utility/constants.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/utility
copying build/lib/dendropy/utility/container.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/utility
copying build/lib/dendropy/utility/debug.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/utility
copying build/lib/dendropy/utility/deprecate.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/utility
copying build/lib/dendropy/utility/error.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/utility
copying build/lib/dendropy/utility/filesys.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/utility
copying build/lib/dendropy/utility/messaging.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/utility
copying build/lib/dendropy/utility/metavar.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/utility
copying build/lib/dendropy/utility/processio.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/utility
copying build/lib/dendropy/utility/terminal.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/utility
copying build/lib/dendropy/utility/textprocessing.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/utility
copying build/lib/dendropy/utility/timeprocessing.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/utility
copying build/lib/dendropy/utility/urlio.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/utility
copying build/lib/dendropy/utility/vcsinfo.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/utility
creating /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/utility/libexec
copying build/lib/dendropy/utility/libexec/__init__.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/utility/libexec
creating /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/simulate
copying build/lib/dendropy/simulate/__init__.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/simulate
copying build/lib/dendropy/simulate/charsim.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/simulate
copying build/lib/dendropy/simulate/popgensim.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/simulate
copying build/lib/dendropy/simulate/treesim.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/simulate
creating /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/model
copying build/lib/dendropy/model/__init__.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/model
copying build/lib/dendropy/model/birthdeath.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/model
copying build/lib/dendropy/model/coalescent.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/model
copying build/lib/dendropy/model/continuous.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/model
copying build/lib/dendropy/model/discrete.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/model
copying build/lib/dendropy/model/multispeciescoalescent.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/model
copying build/lib/dendropy/model/parsimony.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/model
copying build/lib/dendropy/model/protractedspeciation.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/model
copying build/lib/dendropy/model/reconcile.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/model
copying build/lib/dendropy/model/treeshape.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/model
creating /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/mathlib
copying build/lib/dendropy/mathlib/__init__.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/mathlib
copying build/lib/dendropy/mathlib/mathfn.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/mathlib
copying build/lib/dendropy/mathlib/probability.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/mathlib
copying build/lib/dendropy/mathlib/statistics.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/mathlib
creating /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/legacy
copying build/lib/dendropy/legacy/__init__.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/legacy
copying build/lib/dendropy/legacy/coalescent.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/legacy
copying build/lib/dendropy/legacy/continuous.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/legacy
copying build/lib/dendropy/legacy/ncbi.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/legacy
copying build/lib/dendropy/legacy/popgensim.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/legacy
copying build/lib/dendropy/legacy/popgenstat.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/legacy
copying build/lib/dendropy/legacy/reconcile.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/legacy
copying build/lib/dendropy/legacy/seqmodel.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/legacy
copying build/lib/dendropy/legacy/seqsim.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/legacy
copying build/lib/dendropy/legacy/treecalc.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/legacy
copying build/lib/dendropy/legacy/treemanip.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/legacy
copying build/lib/dendropy/legacy/treesim.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/legacy
copying build/lib/dendropy/legacy/treesplit.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/legacy
copying build/lib/dendropy/legacy/treesum.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/legacy
creating /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/interop
copying build/lib/dendropy/interop/__init__.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/interop
copying build/lib/dendropy/interop/ape.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/interop
copying build/lib/dendropy/interop/biopython.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/interop
copying build/lib/dendropy/interop/entrez.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/interop
copying build/lib/dendropy/interop/ete.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/interop
copying build/lib/dendropy/interop/gbif.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/interop
copying build/lib/dendropy/interop/genbank.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/interop
copying build/lib/dendropy/interop/itol.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/interop
copying build/lib/dendropy/interop/muscle.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/interop
copying build/lib/dendropy/interop/paup.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/interop
copying build/lib/dendropy/interop/raxml.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/interop
copying build/lib/dendropy/interop/rspr.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/interop
copying build/lib/dendropy/interop/rstats.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/interop
copying build/lib/dendropy/interop/seqgen.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/interop
creating /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/datamodel
copying build/lib/dendropy/datamodel/__init__.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/datamodel
copying build/lib/dendropy/datamodel/basemodel.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/datamodel
copying build/lib/dendropy/datamodel/charmatrixmodel.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/datamodel
copying build/lib/dendropy/datamodel/charstatemodel.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/datamodel
copying build/lib/dendropy/datamodel/datasetmodel.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/datamodel
copying build/lib/dendropy/datamodel/taxonmodel.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/datamodel
copying build/lib/dendropy/datamodel/treecollectionmodel.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/datamodel
copying build/lib/dendropy/datamodel/treemodel.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/datamodel
creating /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio
copying build/lib/dendropy/dataio/fastawriter.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio
copying build/lib/dendropy/dataio/__init__.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio
copying build/lib/dendropy/dataio/fastareader.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio
copying build/lib/dendropy/dataio/ioservice.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio
copying build/lib/dendropy/dataio/multiphylipreader.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio
copying build/lib/dendropy/dataio/newick.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio
copying build/lib/dendropy/dataio/newickreader.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio
copying build/lib/dendropy/dataio/newickwriter.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio
copying build/lib/dendropy/dataio/newickyielder.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio
copying build/lib/dendropy/dataio/nexmlreader.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio
copying build/lib/dendropy/dataio/nexmlwriter.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio
copying build/lib/dendropy/dataio/nexmlyielder.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio
copying build/lib/dendropy/dataio/nexusprocessing.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio
copying build/lib/dendropy/dataio/nexusreader.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio
copying build/lib/dendropy/dataio/nexuswriter.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio
copying build/lib/dendropy/dataio/nexusyielder.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio
copying build/lib/dendropy/dataio/phylipreader.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio
copying build/lib/dendropy/dataio/phylipwriter.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio
copying build/lib/dendropy/dataio/tokenizer.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio
copying build/lib/dendropy/dataio/xmlprocessing.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio
creating /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/calculate
copying build/lib/dendropy/calculate/__init__.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/calculate
copying build/lib/dendropy/calculate/combinatorics.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/calculate
copying build/lib/dendropy/calculate/mathfn.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/calculate
copying build/lib/dendropy/calculate/phylogeneticdistance.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/calculate
copying build/lib/dendropy/calculate/popgenstat.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/calculate
copying build/lib/dendropy/calculate/probability.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/calculate
copying build/lib/dendropy/calculate/profiledistance.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/calculate
copying build/lib/dendropy/calculate/statistics.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/calculate
copying build/lib/dendropy/calculate/treecompare.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/calculate
copying build/lib/dendropy/calculate/treemeasure.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/calculate
copying build/lib/dendropy/calculate/treescore.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/calculate
copying build/lib/dendropy/calculate/treesum.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/calculate
warning: install_lib: byte-compiling is disabled, skipping.

running install_egg_info
Copying src/DendroPy.egg-info to /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/DendroPy-4.5.1-py3.9.egg-info
running install_scripts
creating /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/bin
copying build/scripts-3.9/sumtrees.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/bin
copying build/scripts-3.9/sumlabels.py -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/bin
copying build/scripts-3.9/dendropy-format -> /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/bin
changing mode of /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/bin/sumtrees.py to 755
changing mode of /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/bin/sumlabels.py to 755
changing mode of /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/bin/dendropy-format to 755
Listing '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1'...
Listing '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/bin'...
Compiling '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/bin/sumlabels.py'...
Compiling '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/bin/sumtrees.py'...
Listing '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib'...
Listing '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9'...
Listing '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages'...
Listing '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/DendroPy-4.5.1-py3.9.egg-info'...
Listing '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy'...
Compiling '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/__init__.py'...
Compiling '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/__main__.py'...
Listing '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/calculate'...
Compiling '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/calculate/__init__.py'...
Compiling '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/calculate/combinatorics.py'...
Compiling '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/calculate/mathfn.py'...
Compiling '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/calculate/phylogeneticdistance.py'...
Compiling '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/calculate/popgenstat.py'...
Compiling '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/calculate/probability.py'...
Compiling '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/calculate/profiledistance.py'...
Compiling '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/calculate/statistics.py'...
Compiling '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/calculate/treecompare.py'...
Compiling '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/calculate/treemeasure.py'...
Compiling '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/calculate/treescore.py'...
Compiling '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/calculate/treesum.py'...
Listing '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio'...
Compiling '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio/__init__.py'...
Compiling '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio/fastareader.py'...
Compiling '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio/fastawriter.py'...
Compiling '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio/ioservice.py'...
Compiling '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio/multiphylipreader.py'...
Compiling '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio/newick.py'...
Compiling '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/dataio/newickreader.py'...
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Compiling '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/utility/urlio.py'...
Compiling '/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages/dendropy/utility/vcsinfo.py'...
phase `install' succeeded after 1.9 seconds
starting phase `add-install-to-pythonpath'
phase `add-install-to-pythonpath' succeeded after 0.0 seconds
starting phase `add-install-to-path'
phase `add-install-to-path' succeeded after 0.0 seconds
starting phase `wrap'
find-files: /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/sbin: No such file or directory
phase `wrap' succeeded after 0.0 seconds
starting phase `check'
running "python setup.py" with command "test" and parameters ()
-setup.py: DendroPy version 4.5.1
-setup.py: using setuptools ('/gnu/store/dh5rr8gd148afs3jzijs8i9gfwwi6igz-python-3.9.9/lib/python3.9/site-packages/setuptools/__init__.py')
-setup.py: searching for packages
-setup.py: packages identified:
           - dendropy                
           - dendropy.utility        
           - dendropy.simulate       
           - dendropy.model          
           - dendropy.mathlib        
           - dendropy.legacy         
           - dendropy.interop        
           - dendropy.datamodel      
           - dendropy.dataio         
           - dendropy.calculate      
           - dendropy.utility.libexec
-setup.py: scripts identified:
           - applications/sumtrees/sumtrees.py           
           - applications/sumlabels/sumlabels.py         
           - applications/dendropy-format/dendropy-format
-setup.py: setuptools command extensions are available
running test
WARNING: Testing via this command is deprecated and will be removed in a future version. Users looking for a generic test entry point independent of test runner are encouraged to use tox.
running egg_info
writing src/DendroPy.egg-info/PKG-INFO
writing dependency_links to src/DendroPy.egg-info/dependency_links.txt
writing entry points to src/DendroPy.egg-info/entry_points.txt
writing requirements to src/DendroPy.egg-info/requires.txt
writing top-level names to src/DendroPy.egg-info/top_level.txt
reading manifest file 'src/DendroPy.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'doc/Makefile'
warning: no files found matching '*' under directory 'doc/source'
warning: no previously-included files matching '.DS_Store' found anywhere in distribution
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '.gitignore' found anywhere in distribution
warning: no previously-included files matching '.gitattributes' found anywhere in distribution
warning: no previously-included files matching '.idea' found anywhere in distribution
warning: no previously-included files matching '__pycache__' found anywhere in distribution
adding license file 'LICENSE.rst'
adding license file 'AUTHORS.rst'
writing manifest file 'src/DendroPy.egg-info/SOURCES.txt'
running build_ext
coverage could not be imported: test coverage analysis not available
test_basic_fasta (tests.test_dataio_fasta_reader.FastaDnaReaderTestCase) ... ok
test_basic_fasta (tests.test_dataio_fasta_reader.FastaProteinReaderTestCase) ... ok
test_basic_fasta (tests.test_dataio_fasta_reader.FastaRnaReaderTestCase) ... ok
test_basic_nexml (tests.test_dataio_nexml_reader_chars.NexmlCharactersContinuousTestCase) ... ok
test_basic_nexml (tests.test_dataio_nexml_reader_chars.NexmlCharactersReaderDnaTestCase) ... ok
test_basic_nexml (tests.test_dataio_nexml_reader_chars.NexmlCharactersReaderProteinTestCase) ... ok
test_basic_nexml (tests.test_dataio_nexml_reader_chars.NexmlCharactersReaderRnaTestCase) ... ok
test_basic_nexml (tests.test_dataio_nexml_reader_chars.NexmlStandardCharacters01234TestCase) ... ok
test_basic_nexus (tests.test_dataio_nexus_reader_chars.NexusCharactersContinuousTestCase) ... ok
test_basic_nexus (tests.test_dataio_nexus_reader_chars.NexusCharactersReaderDnaTestCase) ... ok
test_basic_nexus (tests.test_dataio_nexus_reader_chars.NexusCharactersReaderProteinTestCase) ... ok
test_basic_nexus (tests.test_dataio_nexus_reader_chars.NexusCharactersReaderRnaTestCase) ... ok
testInterleaved (tests.test_dataio_nexus_reader_chars.NexusCharsSubsetsTest)
A bug in DendroPy resulted in the block immediately following an ... ok
testNonInterleaved (tests.test_dataio_nexus_reader_chars.NexusCharsSubsetsTest)
Charsets here go through all forms of position specification. ... ok
test_basic_nexus (tests.test_dataio_nexus_reader_chars.NexusStandardCharacters01234TestCase) ... ok
testTooManyTaxaNonInterleaved (tests.test_dataio_nexus_reader_chars.NexusTooManyTaxaTest) ... ok
test_basic_get (tests.test_dataio_nexus_reader_dataset.DataSetNexusMultipleCharBlocksTestCase) ... ok
test_basic_read (tests.test_dataio_nexus_reader_dataset.DataSetNexusMultipleCharBlocksTestCase) ... ok
test_attached_taxon_namespace (tests.test_dataio_nexus_reader_dataset.DataSetNexusReaderMesquiteMultipleTaxonNamespacesTest) ... ok
test_default (tests.test_dataio_nexus_reader_dataset.DataSetNexusReaderMesquiteMultipleTaxonNamespacesTest) ... ok
test_basic_get (tests.test_dataio_nexus_reader_dataset.DataSetNexusReaderMixedTestCase) ... ok
test_basic_read (tests.test_dataio_nexus_reader_dataset.DataSetNexusReaderMixedTestCase) ... ok
test_get_single (tests.test_dataio_nexus_reader_dataset.DataSetNexusSingleCharsTestCase) ... ok
test_read_single (tests.test_dataio_nexus_reader_dataset.DataSetNexusSingleCharsTestCase) ... ok
test_read_successive_attached_taxon_namespace (tests.test_dataio_nexus_reader_dataset.DataSetNexusSingleCharsTestCase) ... ok
test_read_successive_unattached_taxon_namespace (tests.test_dataio_nexus_reader_dataset.DataSetNexusSingleCharsTestCase) ... ok
testAttachTaxonNamespaceOnGet (tests.test_dataio_nexus_reader_dataset.DataSetNexusTaxonManagementTestCase) ... ok
testBindAndUnbind (tests.test_dataio_nexus_reader_dataset.DataSetNexusTaxonManagementTestCase) ... ok
testBoundTaxonNamespaceDefault (tests.test_dataio_nexus_reader_dataset.DataSetNexusTaxonManagementTestCase) ... ok
testMultiTaxonNamespace (tests.test_dataio_nexus_reader_dataset.DataSetNexusTaxonManagementTestCase) ... ok
test_multiple_trees (tests.test_dataio_nexus_reader_dataset.DataSetNexusTreesTestCase) ... ok
test_with_translate (tests.test_dataio_nexus_reader_dataset.DataSetNexusTreesTestCase) ... ok
test_multiple_trees1 (tests.test_dataio_nexus_reader_dataset.NexusDataSetMultiTreesBlockTestCase) ... ok
test_multiple_trees2 (tests.test_dataio_nexus_reader_dataset.NexusDataSetMultiTreesBlockTestCase) ... ok
test_multiple_trees1 (tests.test_dataio_nexus_reader_tree_list.NexusMultiTreeListTestCase) ... ok
test_multiple_trees2 (tests.test_dataio_nexus_reader_tree_list.NexusMultiTreeListTestCase) ... ok
test_collection_comments_and_annotations (tests.test_dataio_nexus_reader_tree_list.NexusStandardTreeParsingTestCase) ... ok
test_default_get (tests.test_dataio_nexus_reader_tree_list.NexusStandardTreeParsingTestCase) ... ok
test_default_read (tests.test_dataio_nexus_reader_tree_list.NexusStandardTreeParsingTestCase) ... ok
test_out_of_range_collection_offset_get (tests.test_dataio_nexus_reader_tree_list.NexusStandardTreeParsingTestCase) ... ok
test_out_of_range_collection_offset_read (tests.test_dataio_nexus_reader_tree_list.NexusStandardTreeParsingTestCase) ... ok
test_out_of_range_tree_offset_get (tests.test_dataio_nexus_reader_tree_list.NexusStandardTreeParsingTestCase) ... ok
test_out_of_range_tree_offset_read (tests.test_dataio_nexus_reader_tree_list.NexusStandardTreeParsingTestCase) ... ok
test_tree_offset_get (tests.test_dataio_nexus_reader_tree_list.NexusStandardTreeParsingTestCase) ... ok
test_tree_offset_read (tests.test_dataio_nexus_reader_tree_list.NexusStandardTreeParsingTestCase) ... ok
test_unsupported_keyword_arguments_get (tests.test_dataio_nexus_reader_tree_list.NexusStandardTreeParsingTestCase) ... ok
test_unsupported_keyword_arguments_read (tests.test_dataio_nexus_reader_tree_list.NexusStandardTreeParsingTestCase) ... ok
test_with_translate_but_no_taxa_block (tests.test_dataio_nexus_reader_tree_list.NexusStandardTreesWithTranslateBlockButNoTaxaBlockTestCase) ... ok
test_basic_nexus (tests.test_dataio_phylip_reader_chars.PhylipCharactersContinuousTestCase) ... ok
test_basic_phylip (tests.test_dataio_phylip_reader_chars.PhylipCharactersReaderDnaTestCase) ... ok
test_basic_phylip (tests.test_dataio_phylip_reader_chars.PhylipCharactersReaderProteinTestCase) ... ok
test_basic_phylip (tests.test_dataio_phylip_reader_chars.PhylipCharactersReaderRnaTestCase) ... ok
test_strict_interleaved (tests.test_dataio_phylip_reader_chars.PhylipContinuousVariantsTestCases) ... ok
test_strict_sequential (tests.test_dataio_phylip_reader_chars.PhylipContinuousVariantsTestCases) ... ok
test_basic_phylip (tests.test_dataio_phylip_reader_chars.PhylipStandardCharacters01234TestCase) ... ok
test_strict_interleaved (tests.test_dataio_phylip_reader_chars.PhylipVariantsTestCases) ... ok
test_strict_interleaved_with_bad_chars (tests.test_dataio_phylip_reader_chars.PhylipVariantsTestCases) ... ok
test_strict_sequential (tests.test_dataio_phylip_reader_chars.PhylipVariantsTestCases) ... ok
test_construction_from_another_tree_different_label (tests.test_datamodel_tree_list.TestSpecialTreeListConstruction) ... ok
test_append_add (tests.test_datamodel_tree_list.TestTreeListAppend) ... ok
test_append_default (tests.test_datamodel_tree_list.TestTreeListAppend) ... ok
test_append_migrate_matching_labels (tests.test_datamodel_tree_list.TestTreeListAppend) ... ok
test_add_from_another_tree_list_different_namespace (tests.test_datamodel_tree_list.TestTreeListBasicOperations) ... ok
test_append_simple_list_foreign_namespace (tests.test_datamodel_tree_list.TestTreeListBasicOperations) ... ok
test_append_simple_list_same_namespace (tests.test_datamodel_tree_list.TestTreeListBasicOperations) ... ok
test_clear (tests.test_datamodel_tree_list.TestTreeListBasicOperations) ... ok
test_contains (tests.test_datamodel_tree_list.TestTreeListBasicOperations) ... ok
test_delitem (tests.test_datamodel_tree_list.TestTreeListBasicOperations) ... ok
test_extend_from_another_tree_list_different_namespace (tests.test_datamodel_tree_list.TestTreeListBasicOperations) ... ok
test_extend_from_list_of_trees_different_namespace (tests.test_datamodel_tree_list.TestTreeListBasicOperations) ... ok
test_getitem_simple (tests.test_datamodel_tree_list.TestTreeListBasicOperations) ... ok
test_getitem_slice (tests.test_datamodel_tree_list.TestTreeListBasicOperations) ... ok
test_iadd_from_another_tree_list_different_namespace (tests.test_datamodel_tree_list.TestTreeListBasicOperations) ... ok
test_iadd_from_list_of_trees_different_namespace (tests.test_datamodel_tree_list.TestTreeListBasicOperations) ... ok
test_index (tests.test_datamodel_tree_list.TestTreeListBasicOperations) ... ok
test_insert_simple_list_foreign_namespace (tests.test_datamodel_tree_list.TestTreeListBasicOperations) ... ok
test_insert_simple_list_native_namespace (tests.test_datamodel_tree_list.TestTreeListBasicOperations) ... ok
test_iter (tests.test_datamodel_tree_list.TestTreeListBasicOperations) ... ok
test_pop1 (tests.test_datamodel_tree_list.TestTreeListBasicOperations) ... ok
test_pop2 (tests.test_datamodel_tree_list.TestTreeListBasicOperations) ... ok
test_remove (tests.test_datamodel_tree_list.TestTreeListBasicOperations) ... ok
test_reversed (tests.test_datamodel_tree_list.TestTreeListBasicOperations) ... ok
test_setitem_simple (tests.test_datamodel_tree_list.TestTreeListBasicOperations) ... ok
test_setitem_slice_from_list (tests.test_datamodel_tree_list.TestTreeListBasicOperations) ... ok
test_setitem_slice_from_tree_list (tests.test_datamodel_tree_list.TestTreeListBasicOperations) ... ok
test_sort (tests.test_datamodel_tree_list.TestTreeListBasicOperations) ... ok
test_basic_migration (tests.test_datamodel_tree_list.TestTreeListMigrateAndReconstructTaxonNamespace) ... ok
test_basic_reconstruction (tests.test_datamodel_tree_list.TestTreeListMigrateAndReconstructTaxonNamespace) ... ok
test_migrate_taxon_namespace_non_unifying (tests.test_datamodel_tree_list.TestTreeListMigrateAndReconstructTaxonNamespace) ... ok
test_migrate_taxon_namespace_unifying_case_insensitive (tests.test_datamodel_tree_list.TestTreeListMigrateAndReconstructTaxonNamespace) ... ok
test_migrate_taxon_namespace_unifying_case_sensitive (tests.test_datamodel_tree_list.TestTreeListMigrateAndReconstructTaxonNamespace) ... ok
test_reconstruct_taxon_namespace_non_unifying (tests.test_datamodel_tree_list.TestTreeListMigrateAndReconstructTaxonNamespace) ... ok
test_reconstruct_taxon_namespace_unifying_case_insensitive (tests.test_datamodel_tree_list.TestTreeListMigrateAndReconstructTaxonNamespace) ... ok
test_reconstruct_taxon_namespace_unifying_case_sensitive (tests.test_datamodel_tree_list.TestTreeListMigrateAndReconstructTaxonNamespace) ... ok
test_basic_purge (tests.test_datamodel_tree_list.TestTreeListPurgeTaxonNamespace) ... ok
test_noop_purge (tests.test_datamodel_tree_list.TestTreeListPurgeTaxonNamespace) ... ok
test_basic_taxa (tests.test_datamodel_tree_list.TestTreeListTaxa) ... ok
test_noop_update_with_no_taxa (tests.test_datamodel_tree_list.TestTreeListUpdateTaxonNamespace) ... ok
test_update (tests.test_datamodel_tree_list.TestTreeListUpdateTaxonNamespace) ... ok
test_clone0 (tests.test_datamodel_tree_list.TreeListCreatingAndCloning) ... ok
test_deepcopy_excluding_namespace (tests.test_datamodel_tree_list.TreeListCreatingAndCloning) ... ok
test_deepcopy_including_namespace (tests.test_datamodel_tree_list.TreeListCreatingAndCloning) ... ok
test_shallow_copy_with_initializer_list (tests.test_datamodel_tree_list.TreeListCreatingAndCloning) ... ok
test_taxon_namespace_scoped_copy (tests.test_datamodel_tree_list.TreeListCreatingAndCloning) ... ok
test_create_with_taxon_namespace (tests.test_datamodel_tree_list.TreeListCreation) ... ok
test_equal (tests.test_datamodel_tree_list.TreeListIdentity) ... ok
test_hash_dict_membership (tests.test_datamodel_tree_list.TreeListIdentity) ... ok
test_hash_set_membership (tests.test_datamodel_tree_list.TreeListIdentity) ... ok
test_unequal1 (tests.test_datamodel_tree_list.TreeListIdentity) ... ok
test_unequal2 (tests.test_datamodel_tree_list.TreeListIdentity) ... ok
test_plot_by_age (tests.test_asciitree.AsciiTreeTest) ... ok
test_plot_by_depth (tests.test_asciitree.AsciiTreeTest) ... ok
test_plot_by_length (tests.test_asciitree.AsciiTreeTest) ... ok
test_plot_by_level (tests.test_asciitree.AsciiTreeTest) ... ok
test_likelihood_calc (tests.test_birthdeath.BirthDeathLikelihoodTestCases) ... /gnu/store/dh5rr8gd148afs3jzijs8i9gfwwi6igz-python-3.9.9/lib/python3.9/unittest/case.py:550: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/guix-build-python-dendropy-4.5.1.drv-0/source/tests/support/../data/other/birth-death-test-data1.json' mode='r' encoding='UTF-8'>
  method()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testBDTree (tests.test_birthdeath.BirthDeathTreeTest)
PureCoalescentTreeTest -- tree generation without checking [TODO: checks] ... ok
testGSA (tests.test_birthdeath.BirthDeathTreeTest)
test that the pure-birth process produces the correct number of tips with GSA. ... ok
testGSABD (tests.test_birthdeath.BirthDeathTreeTest)
test that the birth-death process produces the correct number of tips with GSA. ... ok
testYule (tests.test_birthdeath.BirthDeathTreeTest)
test that the pure-birth process produces the correct number of tips. ... ok
testBasicEst (tests.test_birthdeath.PureBirthModelEstimationTestCase) ... ok
runTest (tests.test_coalescent.PureCoalescentTreeTest)
PureCoalescentTreeTest -- tree generation without checking [TODO: checks] ... ok
runTest (tests.test_coalescent.TruncatedCoalescentTreeTest)
TruncatedCoalescentTreeTest -- tree generation without checking [TODO: checks] ... ok
test_basic_readonly_iteration_and_access (tests.test_container_frozen_ordered_dict.FrozenOrderedDictTest) ... ok
test_copy (tests.test_container_frozen_ordered_dict.FrozenOrderedDictTest) ... ok
test_copy_construction (tests.test_container_frozen_ordered_dict.FrozenOrderedDictTest) ... ok
test_deepcopy (tests.test_container_frozen_ordered_dict.FrozenOrderedDictTest) ... ok
test_keys (tests.test_container_frozen_ordered_dict.FrozenOrderedDictTest) ... ok
test_readonly (tests.test_container_frozen_ordered_dict.FrozenOrderedDictTest) ... ok
test_values (tests.test_container_frozen_ordered_dict.FrozenOrderedDictTest) ... ok
runTest (tests.test_container_normalized_bitmask_dict.TestNormalizedBitmaskDict)
Testing NormalizedBitmaskDict ... ok
test_basic_adding (tests.test_container_ordered_set.TestOrderedSetCollectionsManagement) ... ok
test_basic_getting (tests.test_container_ordered_set.TestOrderedSetCollectionsManagement) ... ok
test_constructor (tests.test_container_ordered_set.TestOrderedSetCollectionsManagement) ... ok
test_del (tests.test_container_ordered_set.TestOrderedSetCollectionsManagement) ... ok
test_discard (tests.test_container_ordered_set.TestOrderedSetCollectionsManagement) ... ok
test_pop_back (tests.test_container_ordered_set.TestOrderedSetCollectionsManagement) ... ok
test_pop_front (tests.test_container_ordered_set.TestOrderedSetCollectionsManagement) ... ok
test_deepcopy (tests.test_container_ordered_set.TestOrderedSetDeepCopy) ... ok
test_simple_element_deepcopy (tests.test_container_ordered_set.TestOrderedSetDeepCopy) ... ok
test_hash_dict_membership (tests.test_container_ordered_set.TestOrderedSetIdentity) ... ok
test_hash_set_membership (tests.test_container_ordered_set.TestOrderedSetIdentity) ... ok
testTreeValues (tests.test_continuous.BifurcatingTreePICTest) ... ok
runTest (tests.test_continuous.BounceConstrainTest) ... ok
runTest (tests.test_continuous.KTBEvolveCrop) ... ok
runTest (tests.test_continuous.KTBEvolveLinearBounce) ... ok
runTest (tests.test_continuous.KTBRatesTest) ... ok
testError (tests.test_continuous.MultifurcatingTreePICTest) ... ok
testErrorOnDefault (tests.test_continuous.MultifurcatingTreePICTest) ... ok
testIgnore (tests.test_continuous.MultifurcatingTreePICTest) ... ok
testResolve (tests.test_continuous.MultifurcatingTreePICTest) ... ok
runTest (tests.test_continuous.TKPRatesTest) ... ok
test_get_from (tests.test_dataio_basic_tree.TestCustomTreeType) ... ok
test_basic_fasta_chars (tests.test_dataio_fasta_writer.FastaWriterCharactersTestCase) ... ok
test_with_meaningless_token_ucase (tests.test_dataio_newick_reader_rooting.RootingInterpreterDefaultRootedTestCase) ... ok
test_with_no_token (tests.test_dataio_newick_reader_rooting.RootingInterpreterDefaultRootedTestCase) ... ok
test_with_no_token2 (tests.test_dataio_newick_reader_rooting.RootingInterpreterDefaultRootedTestCase) ... ok
test_with_rooted_token_lcase (tests.test_dataio_newick_reader_rooting.RootingInterpreterDefaultRootedTestCase) ... ok
test_with_rooted_token_ucase (tests.test_dataio_newick_reader_rooting.RootingInterpreterDefaultRootedTestCase) ... ok
test_with_unrooted_token_ucase (tests.test_dataio_newick_reader_rooting.RootingInterpreterDefaultRootedTestCase) ... ok
test_with_meaningless_token_ucase (tests.test_dataio_newick_reader_rooting.RootingInterpreterDefaultUnrootedTestCase) ... ok
test_with_no_token (tests.test_dataio_newick_reader_rooting.RootingInterpreterDefaultUnrootedTestCase) ... ok
test_with_no_token2 (tests.test_dataio_newick_reader_rooting.RootingInterpreterDefaultUnrootedTestCase) ... ok
test_with_rooted_token_lcase (tests.test_dataio_newick_reader_rooting.RootingInterpreterDefaultUnrootedTestCase) ... ok
test_with_rooted_token_ucase (tests.test_dataio_newick_reader_rooting.RootingInterpreterDefaultUnrootedTestCase) ... ok
test_with_unrooted_token_ucase (tests.test_dataio_newick_reader_rooting.RootingInterpreterDefaultUnrootedTestCase) ... ok
test_with_meaningless_token_ucase (tests.test_dataio_newick_reader_rooting.RootingInterpreterForceRootedTestCase) ... ok
test_with_no_token (tests.test_dataio_newick_reader_rooting.RootingInterpreterForceRootedTestCase) ... ok
test_with_no_token2 (tests.test_dataio_newick_reader_rooting.RootingInterpreterForceRootedTestCase) ... ok
test_with_rooted_token_lcase (tests.test_dataio_newick_reader_rooting.RootingInterpreterForceRootedTestCase) ... ok
test_with_rooted_token_ucase (tests.test_dataio_newick_reader_rooting.RootingInterpreterForceRootedTestCase) ... ok
test_with_unrooted_token_ucase (tests.test_dataio_newick_reader_rooting.RootingInterpreterForceRootedTestCase) ... ok
test_with_meaningless_token_ucase (tests.test_dataio_newick_reader_rooting.RootingInterpreterForceUnrootedTestCase) ... ok
test_with_no_token (tests.test_dataio_newick_reader_rooting.RootingInterpreterForceUnrootedTestCase) ... ok
test_with_no_token2 (tests.test_dataio_newick_reader_rooting.RootingInterpreterForceUnrootedTestCase) ... ok
test_with_rooted_token_lcase (tests.test_dataio_newick_reader_rooting.RootingInterpreterForceUnrootedTestCase) ... ok
test_with_rooted_token_ucase (tests.test_dataio_newick_reader_rooting.RootingInterpreterForceUnrootedTestCase) ... ok
test_with_unrooted_token_ucase (tests.test_dataio_newick_reader_rooting.RootingInterpreterForceUnrootedTestCase) ... ok
test_legacy_keywords (tests.test_dataio_newick_reader_rooting.RootingInterpreterLegacySupportTestCase) ... ok
test_multiple_keyword_error (tests.test_dataio_newick_reader_rooting.RootingInterpreterLegacySupportTestCase) ... ok
testFigtreeStyleBasic (tests.test_dataio_newick_reader_tree.CommentMetaDataTests) ... ok
testNHXBasic (tests.test_dataio_newick_reader_tree.CommentMetaDataTests) ... ok
test_incomplete_metadata (tests.test_dataio_newick_reader_tree.CommentMetaDataTests) ... ok
test_anonymous_node_comment_association (tests.test_dataio_newick_reader_tree.CommentReadingTests) ... ok
test_comment_association (tests.test_dataio_newick_reader_tree.CommentReadingTests) ... ok
test_multi_position_comments (tests.test_dataio_newick_reader_tree.CommentReadingTests) ... ok
test_post_node_and_edge_comments (tests.test_dataio_newick_reader_tree.CommentReadingTests) ... ok
test_simple_post_edge_length_comments (tests.test_dataio_newick_reader_tree.CommentReadingTests) ... ok
test_simple_post_node_comments (tests.test_dataio_newick_reader_tree.CommentReadingTests) ... ok
test_basic (tests.test_dataio_newick_reader_tree.JplaceParsingTest) ... ok
test_do_not_parse_by_default (tests.test_dataio_newick_reader_tree.JplaceParsingTest) ... ok
test_malformed_error_message_parsing_jplace (tests.test_dataio_newick_reader_tree.JplaceParsingTest) ... ok
test_assign_to_edges (tests.test_dataio_newick_reader_tree.NewickInternalLabelAssociationTest) ... ok
test_anonymous_taxa (tests.test_dataio_newick_reader_tree.NewickTreeAnonymousTaxa) ... ok
test_anonymous_taxa_no_error (tests.test_dataio_newick_reader_tree.NewickTreeAnonymousTaxa) ... ok
test_duplicate_taxa1 (tests.test_dataio_newick_reader_tree.NewickTreeDuplicateTaxa) ... ok
test_invalid_trees (tests.test_dataio_newick_reader_tree.NewickTreeInvalidStatements) ... ok
test_basic_taxa (tests.test_dataio_newick_reader_tree.NewickTreeLabelParsingTest) ... ok
test_quoted_underscores (tests.test_dataio_newick_reader_tree.NewickTreeLabelParsingTest) ... ok
test_unquoted_underscores (tests.test_dataio_newick_reader_tree.NewickTreeLabelParsingTest) ... ok
test_unquoted_underscores_preserved (tests.test_dataio_newick_reader_tree.NewickTreeLabelParsingTest) ... ok
test_multifurcating (tests.test_dataio_newick_reader_tree.NewickTreeMultifurcatingtree) ... ok
test_edge_lengths1 (tests.test_dataio_newick_reader_tree.NewickTreeQuotedLabels) ... ok
test_basic_parsing (tests.test_dataio_newick_reader_tree.NewickTreeReaderBasic) ... ok
test_rooting_weighting_and_tree_metadata_handling (tests.test_dataio_newick_reader_tree.NewickTreeReaderBasic) ... ok
test_offset_get_with_redundant_semicolons (tests.test_dataio_newick_reader_tree.NewickTreeReaderOffsetTreeTest) ... ok
test_out_of_range_collection_offset_newick_get (tests.test_dataio_newick_reader_tree.NewickTreeReaderOffsetTreeTest) ... ok
test_out_of_range_tree_offset_newick_get (tests.test_dataio_newick_reader_tree.NewickTreeReaderOffsetTreeTest) ... ok
test_tree_offset_newick_get (tests.test_dataio_newick_reader_tree.NewickTreeReaderOffsetTreeTest) ... ok
test_tree_offset_without_collection_offset_newick_get (tests.test_dataio_newick_reader_tree.NewickTreeReaderOffsetTreeTest) ... ok
test_unsupported_keyword_arguments (tests.test_dataio_newick_reader_tree.NewickTreeUnsupportedKeywordArguments) ... ok
test_get (tests.test_dataio_newick_reader_tree_list.NewickTreeListMetadataTest) ... ok
test_read_metadata (tests.test_dataio_newick_reader_tree_list.NewickTreeListMetadataTest) ... ok
test_selective_taxa_read (tests.test_dataio_newick_reader_tree_list.NewickTreeListMetadataTest) ... ok
test_default_get (tests.test_dataio_newick_reader_tree_list.NewickTreeListReaderDefaultTestCase) ... ok
test_default_read (tests.test_dataio_newick_reader_tree_list.NewickTreeListReaderDefaultTestCase) ... ok
test_out_of_range_collection_offset_get (tests.test_dataio_newick_reader_tree_list.NewickTreeListReaderDefaultTestCase) ... ok
test_out_of_range_collection_offset_read (tests.test_dataio_newick_reader_tree_list.NewickTreeListReaderDefaultTestCase) ... ok
test_out_of_range_tree_offset_get (tests.test_dataio_newick_reader_tree_list.NewickTreeListReaderDefaultTestCase) ... ok
test_out_of_range_tree_offset_read (tests.test_dataio_newick_reader_tree_list.NewickTreeListReaderDefaultTestCase) ... ok
test_tree_offset_get (tests.test_dataio_newick_reader_tree_list.NewickTreeListReaderDefaultTestCase) ... ok
test_tree_offset_read (tests.test_dataio_newick_reader_tree_list.NewickTreeListReaderDefaultTestCase) ... ok
test_unsupported_keyword_arguments_get (tests.test_dataio_newick_reader_tree_list.NewickTreeListReaderDefaultTestCase) ... ok
test_unsupported_keyword_arguments_read (tests.test_dataio_newick_reader_tree_list.NewickTreeListReaderDefaultTestCase) ... ok
test_multiple_redundant_semicolons (tests.test_dataio_newick_reader_tree_list.NewickTreeListReaderMultipleRedundantSemiColons) ... ok
test_get (tests.test_dataio_newick_reader_tree_list.NewickTreeListReaderSuppressedInternalSuppressedLeafTaxaTestCase) ... ok
test_selective_taxa_read (tests.test_dataio_newick_reader_tree_list.NewickTreeListReaderSuppressedInternalSuppressedLeafTaxaTestCase) ... ok
test_get (tests.test_dataio_newick_reader_tree_list.NewickTreeListReaderSuppressedInternalUnsuppressedLeafTaxaTestCase) ... ok
test_selective_taxa_read (tests.test_dataio_newick_reader_tree_list.NewickTreeListReaderSuppressedInternalUnsuppressedLeafTaxaTestCase) ... ok
test_shared_taxon_namespace (tests.test_dataio_newick_reader_tree_list.NewickTreeListReaderTaxonNamespaceTest) ... ok
test_get (tests.test_dataio_newick_reader_tree_list.NewickTreeListReaderUnsuppressedInternalSuppressedLeafTaxaTestCase) ... ok
test_selective_taxa_read (tests.test_dataio_newick_reader_tree_list.NewickTreeListReaderUnsuppressedInternalSuppressedLeafTaxaTestCase) ... ok
test_get (tests.test_dataio_newick_reader_tree_list.NewickTreeListReaderUnsuppressedInternalUnsuppressedLeafTaxaTestCase) ... ok
test_selective_taxa_read (tests.test_dataio_newick_reader_tree_list.NewickTreeListReaderUnsuppressedInternalUnsuppressedLeafTaxaTestCase) ... ok
test_correct_rooting_weighting_and_metadata_association (tests.test_dataio_newick_reader_tree_list.NewickTreeListRootingAndMetadataTest) ... ok
test_roundtrip_full (tests.test_dataio_newick_writer.NewickTreeWriterDefaultTest) ... ok
test_edge_label_compose_fn (tests.test_dataio_newick_writer.NewickTreeWriterGeneralOptionsTests) ... ok
test_edge_lengths (tests.test_dataio_newick_writer.NewickTreeWriterGeneralOptionsTests) ... ok
test_node_label_compose_fn (tests.test_dataio_newick_writer.NewickTreeWriterGeneralOptionsTests) ... ok
test_node_labeling (tests.test_dataio_newick_writer.NewickTreeWriterGeneralOptionsTests) ... ok
test_preserve_spaces (tests.test_dataio_newick_writer.NewickTreeWriterGeneralOptionsTests) ... ok
test_rooting_token (tests.test_dataio_newick_writer.NewickTreeWriterGeneralOptionsTests) ... ok
test_store_tree_weights (tests.test_dataio_newick_writer.NewickTreeWriterGeneralOptionsTests) ... ok
test_suppress_annotations (tests.test_dataio_newick_writer.NewickTreeWriterGeneralOptionsTests) ... ok
test_suppress_item_comments (tests.test_dataio_newick_writer.NewickTreeWriterGeneralOptionsTests) ... ok
test_unquoted_underscores (tests.test_dataio_newick_writer.NewickTreeWriterGeneralOptionsTests) ... ok
test_basic_nexml_chars (tests.test_dataio_nexml_writer_chars.NexmlWriterCharactersTestCase) ... ok
test_annotated_tree_list_writing (tests.test_dataio_nexml_writer_trees.NexmlStandardTreeListWriterTestCase) ... ok
test_roundtrip_full (tests.test_dataio_nexml_writer_trees.NexmlTreeWriterDefaultTest) ... ok
test_simple (tests.test_dataio_nexml_writer_trees.NexmlTreeWriterTests) ... ok
testCaseInsensitiveChars (tests.test_dataio_nexus_taxon_handling.NexusTaxaCaseInsensitivityTest) ... ok
testCaseSensitiveChars (tests.test_dataio_nexus_taxon_handling.NexusTaxaCaseInsensitivityTest) ... ok
testDefaultCaseSensitivityChars (tests.test_dataio_nexus_taxon_handling.NexusTaxaCaseInsensitivityTest) ... ok
testTooManyTaxaNonInterleaved (tests.test_dataio_nexus_taxon_handling.NexusTooManyTaxaTest) ... ok
test_add_taxon (tests.test_dataio_nexus_taxon_handling.TaxonSymbolMappingTest) ... ok
test_mixed_token_lookup (tests.test_dataio_nexus_taxon_handling.TaxonSymbolMappingTest) ... ok
test_new_taxon (tests.test_dataio_nexus_taxon_handling.TaxonSymbolMappingTest) ... ok
test_no_number_lookup_and_create (tests.test_dataio_nexus_taxon_handling.TaxonSymbolMappingTest) ... ok
test_no_number_lookup_and_create2 (tests.test_dataio_nexus_taxon_handling.TaxonSymbolMappingTest) ... ok
test_simple_token_lookup (tests.test_dataio_nexus_taxon_handling.TaxonSymbolMappingTest) ... ok
test_standard_lookup_and_create (tests.test_dataio_nexus_taxon_handling.TaxonSymbolMappingTest) ... ok
test_taxon_namespace_locking (tests.test_dataio_nexus_taxon_handling.TaxonSymbolMappingTest) ... ok
test_tricky_token_lookup (tests.test_dataio_nexus_taxon_handling.TaxonSymbolMappingTest) ... ok
test_basic (tests.test_dataio_nexus_tree_yielder.NexusTreeYielderDefaultTestCase) ... ok
test_basic_nexus_chars (tests.test_dataio_nexus_writer_chars.NexusWriterCharactersTestCase) ... ok
test_attached_taxon_namespace (tests.test_dataio_nexus_writer_dataset.DataSetNexusWriterMesquiteMultipleTaxonNamespacesTest) ... ok
test_default (tests.test_dataio_nexus_writer_dataset.DataSetNexusWriterMesquiteMultipleTaxonNamespacesTest) ... ok
test_basic (tests.test_dataio_nexus_writer_dataset.DataSetNexusWriterMixedTestCase) ... ok
test_roundtrip_full (tests.test_dataio_nexus_writer_tree.NexusTreeWriterDefaultTest) ... ok
test_edge_label_compose_fn (tests.test_dataio_nexus_writer_tree.NexusTreeWriterGeneralOptionsTests) ... ok
test_edge_lengths (tests.test_dataio_nexus_writer_tree.NexusTreeWriterGeneralOptionsTests) ... ok
test_node_label_compose_fn (tests.test_dataio_nexus_writer_tree.NexusTreeWriterGeneralOptionsTests) ... ok
test_node_labeling (tests.test_dataio_nexus_writer_tree.NexusTreeWriterGeneralOptionsTests) ... ok
test_preserve_spaces (tests.test_dataio_nexus_writer_tree.NexusTreeWriterGeneralOptionsTests) ... ok
test_rooting_token (tests.test_dataio_nexus_writer_tree.NexusTreeWriterGeneralOptionsTests) ... ok
test_store_tree_weights (tests.test_dataio_nexus_writer_tree.NexusTreeWriterGeneralOptionsTests) ... ok
test_suppress_annotations (tests.test_dataio_nexus_writer_tree.NexusTreeWriterGeneralOptionsTests) ... ok
test_suppress_item_comments (tests.test_dataio_nexus_writer_tree.NexusTreeWriterGeneralOptionsTests) ... ok
test_unquoted_underscores (tests.test_dataio_nexus_writer_tree.NexusTreeWriterGeneralOptionsTests) ... ok
test_simple (tests.test_dataio_nexus_writer_tree.NexusTreeWriterTests) ... ok
test_annotated_tree_list_writing (tests.test_dataio_nexus_writer_tree_list.NexusStandardTreeListWriterTestCase) ... ok
test_basic_phylip_chars (tests.test_dataio_phylip_writer_chars.PhylipWriterCharactersTestCase) ... ok
test_strict_write (tests.test_dataio_phylip_writer_chars.PhylipWriterCharactersVariantsTestCase) ... ok
test_captured_delimiters (tests.test_dataio_tokenizer.NexusTokenizerTestCase) ... ok
test_comments (tests.test_dataio_tokenizer.NexusTokenizerTestCase) ... ok
test_empty (tests.test_dataio_tokenizer.NexusTokenizerTestCase) ... ok
test_padded_quoted_string (tests.test_dataio_tokenizer.NexusTokenizerTestCase) ... ok
test_runon_quoted_string (tests.test_dataio_tokenizer.NexusTokenizerTestCase) ... ok
test_simple_quoted_string (tests.test_dataio_tokenizer.NexusTokenizerTestCase) ... ok
test_simple_string (tests.test_dataio_tokenizer.NexusTokenizerTestCase) ... ok
test_deep_copy (tests.test_datamodel_annotations.AnnotableDeepCopyTester) ... ok
test_nested_deep_copy (tests.test_datamodel_annotations.AnnotableDeepCopyTester) ... ok
test_encoding (tests.test_datamodel_bipartitions.BipartitionEncodingTestCase) ... ok
test_clear (tests.test_datamodel_charmatrix.CharacterMatrixBasicCRUDTests) ... ok
test_delitem (tests.test_datamodel_charmatrix.CharacterMatrixBasicCRUDTests) ... ok
test_multi_setitem (tests.test_datamodel_charmatrix.CharacterMatrixBasicCRUDTests) ... ok
test_setitem_by_idx_not_in_namespace (tests.test_datamodel_charmatrix.CharacterMatrixBasicCRUDTests) ... ok
test_setitem_by_taxon (tests.test_datamodel_charmatrix.CharacterMatrixBasicCRUDTests) ... ok
test_setitem_by_taxon_idx (tests.test_datamodel_charmatrix.CharacterMatrixBasicCRUDTests) ... ok
test_setitem_by_taxon_label (tests.test_datamodel_charmatrix.CharacterMatrixBasicCRUDTests) ... ok
test_setitem_by_taxon_not_in_namespace (tests.test_datamodel_charmatrix.CharacterMatrixBasicCRUDTests) ... ok
test_add_sequences (tests.test_datamodel_charmatrix.CharacterMatrixBinaryOps) ... ok
test_add_sequences_fail (tests.test_datamodel_charmatrix.CharacterMatrixBinaryOps) ... ok
test_extend_matrix (tests.test_datamodel_charmatrix.CharacterMatrixBinaryOps) ... ok
test_extend_matrix_fail (tests.test_datamodel_charmatrix.CharacterMatrixBinaryOps) ... ok
test_extend_sequences (tests.test_datamodel_charmatrix.CharacterMatrixBinaryOps) ... ok
test_extend_sequences_fail (tests.test_datamodel_charmatrix.CharacterMatrixBinaryOps) ... ok
test_replace_sequences (tests.test_datamodel_charmatrix.CharacterMatrixBinaryOps) ... ok
test_replace_sequences_fail (tests.test_datamodel_charmatrix.CharacterMatrixBinaryOps) ... ok
test_update_sequences (tests.test_datamodel_charmatrix.CharacterMatrixBinaryOps) ... ok
test_update_sequences_fail (tests.test_datamodel_charmatrix.CharacterMatrixBinaryOps) ... ok
test_clone0 (tests.test_datamodel_charmatrix.CharacterMatrixCreatingAndCloningTestCase) ... ok
test_deepcopy_excluding_namespace (tests.test_datamodel_charmatrix.CharacterMatrixCreatingAndCloningTestCase) ... ok
test_deepcopy_including_namespace (tests.test_datamodel_charmatrix.CharacterMatrixCreatingAndCloningTestCase) ... ok
test_shallow_copy_with_initializer_list (tests.test_datamodel_charmatrix.CharacterMatrixCreatingAndCloningTestCase) ... ok
test_taxon_namespace_scoped_copy (tests.test_datamodel_charmatrix.CharacterMatrixCreatingAndCloningTestCase) ... ok
test_fill (tests.test_datamodel_charmatrix.CharacterMatrixFillAndPackTestCase) ... ok
test_fill_taxa (tests.test_datamodel_charmatrix.CharacterMatrixFillAndPackTestCase) ... ok
test_equal (tests.test_datamodel_charmatrix.CharacterMatrixIdentity) ... ok
test_hash_dict_membership (tests.test_datamodel_charmatrix.CharacterMatrixIdentity) ... ok
test_hash_set_membership (tests.test_datamodel_charmatrix.CharacterMatrixIdentity) ... ok
test_standard_iterator (tests.test_datamodel_charmatrix.CharacterMatrixIteratorTests) ... ok
test_sequence_sizes (tests.test_datamodel_charmatrix.CharacterMatrixMetricsTest) ... ok
test_assign_taxon_namespace (tests.test_datamodel_charmatrix.CharacterMatrixTaxonManagement) ... ok
test_clone0 (tests.test_datamodel_charmatrix.ContinuousCharacterMatrixCreatingAndCloningTestCase) ... ok
test_deepcopy_excluding_namespace (tests.test_datamodel_charmatrix.ContinuousCharacterMatrixCreatingAndCloningTestCase) ... ok
test_deepcopy_including_namespace (tests.test_datamodel_charmatrix.ContinuousCharacterMatrixCreatingAndCloningTestCase) ... ok
test_shallow_copy_with_initializer_list (tests.test_datamodel_charmatrix.ContinuousCharacterMatrixCreatingAndCloningTestCase) ... ok
test_taxon_namespace_scoped_copy (tests.test_datamodel_charmatrix.ContinuousCharacterMatrixCreatingAndCloningTestCase) ... ok
test_clone0 (tests.test_datamodel_charmatrix.DnaCharacterMatrixCreatingAndCloningTestCase) ... ok
test_deepcopy_excluding_namespace (tests.test_datamodel_charmatrix.DnaCharacterMatrixCreatingAndCloningTestCase) ... ok
test_deepcopy_including_namespace (tests.test_datamodel_charmatrix.DnaCharacterMatrixCreatingAndCloningTestCase) ... ok
test_shallow_copy_with_initializer_list (tests.test_datamodel_charmatrix.DnaCharacterMatrixCreatingAndCloningTestCase) ... ok
test_taxon_namespace_scoped_copy (tests.test_datamodel_charmatrix.DnaCharacterMatrixCreatingAndCloningTestCase) ... ok
test_clone0 (tests.test_datamodel_charmatrix.InfiniteSitesCharacterMatrixCreatingAndCloningTestCase) ... ok
test_deepcopy_excluding_namespace (tests.test_datamodel_charmatrix.InfiniteSitesCharacterMatrixCreatingAndCloningTestCase) ... ok
test_deepcopy_including_namespace (tests.test_datamodel_charmatrix.InfiniteSitesCharacterMatrixCreatingAndCloningTestCase) ... ok
test_shallow_copy_with_initializer_list (tests.test_datamodel_charmatrix.InfiniteSitesCharacterMatrixCreatingAndCloningTestCase) ... ok
test_taxon_namespace_scoped_copy (tests.test_datamodel_charmatrix.InfiniteSitesCharacterMatrixCreatingAndCloningTestCase) ... ok
test_clone0 (tests.test_datamodel_charmatrix.NucleotideCharacterMatrixCreatingAndCloningTestCase) ... ok
test_deepcopy_excluding_namespace (tests.test_datamodel_charmatrix.NucleotideCharacterMatrixCreatingAndCloningTestCase) ... ok
test_deepcopy_including_namespace (tests.test_datamodel_charmatrix.NucleotideCharacterMatrixCreatingAndCloningTestCase) ... ok
test_shallow_copy_with_initializer_list (tests.test_datamodel_charmatrix.NucleotideCharacterMatrixCreatingAndCloningTestCase) ... ok
test_taxon_namespace_scoped_copy (tests.test_datamodel_charmatrix.NucleotideCharacterMatrixCreatingAndCloningTestCase) ... ok
test_clone0 (tests.test_datamodel_charmatrix.ProteinCharacterMatrixCreatingAndCloningTestCase) ... ok
test_deepcopy_excluding_namespace (tests.test_datamodel_charmatrix.ProteinCharacterMatrixCreatingAndCloningTestCase) ... ok
test_deepcopy_including_namespace (tests.test_datamodel_charmatrix.ProteinCharacterMatrixCreatingAndCloningTestCase) ... ok
test_shallow_copy_with_initializer_list (tests.test_datamodel_charmatrix.ProteinCharacterMatrixCreatingAndCloningTestCase) ... ok
test_taxon_namespace_scoped_copy (tests.test_datamodel_charmatrix.ProteinCharacterMatrixCreatingAndCloningTestCase) ... ok
test_clone0 (tests.test_datamodel_charmatrix.RestrictionSitesCharacterMatrixCreatingAndCloningTestCase) ... ok
test_deepcopy_excluding_namespace (tests.test_datamodel_charmatrix.RestrictionSitesCharacterMatrixCreatingAndCloningTestCase) ... ok
test_deepcopy_including_namespace (tests.test_datamodel_charmatrix.RestrictionSitesCharacterMatrixCreatingAndCloningTestCase) ... ok
test_shallow_copy_with_initializer_list (tests.test_datamodel_charmatrix.RestrictionSitesCharacterMatrixCreatingAndCloningTestCase) ... ok
test_taxon_namespace_scoped_copy (tests.test_datamodel_charmatrix.RestrictionSitesCharacterMatrixCreatingAndCloningTestCase) ... ok
test_clone0 (tests.test_datamodel_charmatrix.RnaCharacterMatrixCreatingAndCloningTestCase) ... ok
test_deepcopy_excluding_namespace (tests.test_datamodel_charmatrix.RnaCharacterMatrixCreatingAndCloningTestCase) ... ok
test_deepcopy_including_namespace (tests.test_datamodel_charmatrix.RnaCharacterMatrixCreatingAndCloningTestCase) ... ok
test_shallow_copy_with_initializer_list (tests.test_datamodel_charmatrix.RnaCharacterMatrixCreatingAndCloningTestCase) ... ok
test_taxon_namespace_scoped_copy (tests.test_datamodel_charmatrix.RnaCharacterMatrixCreatingAndCloningTestCase) ... ok
test_basic_migration (tests.test_datamodel_charmatrix.TestCharacterMatrixReconstructAndMigrateTaxonNamespace) ... ok
test_basic_reconstruction (tests.test_datamodel_charmatrix.TestCharacterMatrixReconstructAndMigrateTaxonNamespace) ... ok
test_migrate_taxon_namespace_non_unifying (tests.test_datamodel_charmatrix.TestCharacterMatrixReconstructAndMigrateTaxonNamespace) ... ok
test_migrate_taxon_namespace_unifying_case_insensitive (tests.test_datamodel_charmatrix.TestCharacterMatrixReconstructAndMigrateTaxonNamespace) ... ok
test_migrate_taxon_namespace_unifying_case_insensitive_fail (tests.test_datamodel_charmatrix.TestCharacterMatrixReconstructAndMigrateTaxonNamespace) ... ok
test_migrate_taxon_namespace_unifying_case_sensitive (tests.test_datamodel_charmatrix.TestCharacterMatrixReconstructAndMigrateTaxonNamespace) ... ok
test_migrate_taxon_namespace_unifying_case_sensitive_fail (tests.test_datamodel_charmatrix.TestCharacterMatrixReconstructAndMigrateTaxonNamespace) ... ok
test_reconstruct_taxon_namespace_non_unifying (tests.test_datamodel_charmatrix.TestCharacterMatrixReconstructAndMigrateTaxonNamespace) ... ok
test_reconstruct_taxon_namespace_unifying_case_insensitive (tests.test_datamodel_charmatrix.TestCharacterMatrixReconstructAndMigrateTaxonNamespace) ... ok
test_reconstruct_taxon_namespace_unifying_case_insensitive_fail (tests.test_datamodel_charmatrix.TestCharacterMatrixReconstructAndMigrateTaxonNamespace) ... ok
test_reconstruct_taxon_namespace_unifying_case_sensitive (tests.test_datamodel_charmatrix.TestCharacterMatrixReconstructAndMigrateTaxonNamespace) ... ok
test_reconstruct_taxon_namespace_unifying_case_sensitive_fail (tests.test_datamodel_charmatrix.TestCharacterMatrixReconstructAndMigrateTaxonNamespace) ... ok
test_basic_purge (tests.test_datamodel_charmatrix.TestCharacterMatrixTaxa) ... ok
test_noop_purge (tests.test_datamodel_charmatrix.TestCharacterMatrixTaxa) ... ok
test_update (tests.test_datamodel_charmatrix.TestCharacterMatrixUpdateTaxonNamespace) ... ok
test_basic_add (tests.test_datamodel_dataset.DataSetAddTestCase) ... ok
test_basic_add_char_matrix (tests.test_datamodel_dataset.DataSetAddTestCase) ... ok
test_basic_add_taxon_namespace (tests.test_datamodel_dataset.DataSetAddTestCase) ... ok
test_basic_add_tree_list (tests.test_datamodel_dataset.DataSetAddTestCase) ... ok
test_construction (tests.test_datamodel_dataset.DataSetAddTestCase) ... ok
test_attached_taxon_namespace_default (tests.test_datamodel_dataset.DataSetAttachedTaxonNamespaceModeTestCase) ... ok
test_attached_taxon_namespace_new_char_matrix (tests.test_datamodel_dataset.DataSetAttachedTaxonNamespaceModeTestCase) ... ok
test_attached_taxon_namespace_new_tree_list (tests.test_datamodel_dataset.DataSetAttachedTaxonNamespaceModeTestCase) ... ok
test_basic_new_char_matrix (tests.test_datamodel_dataset.DataSetNewTestCase) ... ok
test_basic_new_taxon_namespace (tests.test_datamodel_dataset.DataSetNewTestCase) ... ok
test_basic_new_tree_list (tests.test_datamodel_dataset.DataSetNewTestCase) ... ok
test_basic_create_with_label (tests.test_datamodel_dataset.EmptyDataSetWithLabelCreationTestCase) ... ok
runTest (tests.test_datamodel_split_bitmasks.CladeMaskTest) ... ok
runTest (tests.test_datamodel_split_bitmasks.CountBitsTest) ... ok
testPrunedThenEncoding (tests.test_datamodel_split_bitmasks.IncompleteLeafSetSplitTest) ... ok
testRooted (tests.test_datamodel_split_bitmasks.IncompleteLeafSetSplitTest) ... ok
testUnrooted (tests.test_datamodel_split_bitmasks.IncompleteLeafSetSplitTest) ... ok
runTest (tests.test_datamodel_split_bitmasks.IsTrivialTest) ... ok
runTest (tests.test_datamodel_split_bitmasks.LowestBitTest) ... ok
test_product_of_split_support_on_tree (tests.test_datamodel_split_bitmasks.TestTreeSplitSupportCredibilityScoring) ... ok
test_sum_of_split_support_on_tree (tests.test_datamodel_split_bitmasks.TestTreeSplitSupportCredibilityScoring) ... ok
test_sum_of_split_support_on_tree2 (tests.test_datamodel_split_bitmasks.TestTreeSplitSupportCredibilityScoring) ... ok
test_ambiguous_state_definitions (tests.test_datamodel_statealphabet.BinaryStateAlphabetTest) ... ok
test_canonical_symbol_state_map (tests.test_datamodel_statealphabet.BinaryStateAlphabetTest) ... ok
test_canonical_symbols_property (tests.test_datamodel_statealphabet.BinaryStateAlphabetTest) ... ok
test_compiled_lookup_immutability (tests.test_datamodel_statealphabet.BinaryStateAlphabetTest) ... ok
test_full_symbol_state_map (tests.test_datamodel_statealphabet.BinaryStateAlphabetTest) ... ok
test_fundamental_state_definitions (tests.test_datamodel_statealphabet.BinaryStateAlphabetTest) ... ok
test_get_canonical_symbol_for_symbol (tests.test_datamodel_statealphabet.BinaryStateAlphabetTest) ... ok
test_get_fundamental_states_for_symbols (tests.test_datamodel_statealphabet.BinaryStateAlphabetTest) ... ok
test_get_states_for_symbols (tests.test_datamodel_statealphabet.BinaryStateAlphabetTest) ... ok
test_getitem (tests.test_datamodel_statealphabet.BinaryStateAlphabetTest) ... ok
test_match_state (tests.test_datamodel_statealphabet.BinaryStateAlphabetTest) ... ok
test_no_data_state (tests.test_datamodel_statealphabet.BinaryStateAlphabetTest) ... ok
test_on_the_fly_creation_of_multistate (tests.test_datamodel_statealphabet.BinaryStateAlphabetTest) ... ok
test_polymorphic_state_definitions (tests.test_datamodel_statealphabet.BinaryStateAlphabetTest) ... ok
test_state_denomination (tests.test_datamodel_statealphabet.BinaryStateAlphabetTest) ... ok
test_state_iter (tests.test_datamodel_statealphabet.BinaryStateAlphabetTest) ... ok
test_states_property (tests.test_datamodel_statealphabet.BinaryStateAlphabetTest) ... ok
test_symbol_iter (tests.test_datamodel_statealphabet.BinaryStateAlphabetTest) ... ok
test_symbol_state_pair_iter (tests.test_datamodel_statealphabet.BinaryStateAlphabetTest) ... ok
test_ambiguous_state_definitions (tests.test_datamodel_statealphabet.DnaStateAlphabetTest) ... ok
test_canonical_symbol_state_map (tests.test_datamodel_statealphabet.DnaStateAlphabetTest) ... ok
test_canonical_symbols_property (tests.test_datamodel_statealphabet.DnaStateAlphabetTest) ... ok
test_compiled_lookup_immutability (tests.test_datamodel_statealphabet.DnaStateAlphabetTest) ... ok
test_full_symbol_state_map (tests.test_datamodel_statealphabet.DnaStateAlphabetTest) ... ok
test_fundamental_state_definitions (tests.test_datamodel_statealphabet.DnaStateAlphabetTest) ... ok
test_get_canonical_symbol_for_symbol (tests.test_datamodel_statealphabet.DnaStateAlphabetTest) ... ok
test_get_fundamental_states_for_symbols (tests.test_datamodel_statealphabet.DnaStateAlphabetTest) ... ok
test_get_states_for_symbols (tests.test_datamodel_statealphabet.DnaStateAlphabetTest) ... ok
test_getitem (tests.test_datamodel_statealphabet.DnaStateAlphabetTest) ... ok
test_match_state (tests.test_datamodel_statealphabet.DnaStateAlphabetTest) ... ok
test_no_data_state (tests.test_datamodel_statealphabet.DnaStateAlphabetTest) ... ok
test_on_the_fly_creation_of_multistate (tests.test_datamodel_statealphabet.DnaStateAlphabetTest) ... ok
test_polymorphic_state_definitions (tests.test_datamodel_statealphabet.DnaStateAlphabetTest) ... ok
test_state_denomination (tests.test_datamodel_statealphabet.DnaStateAlphabetTest) ... ok
test_state_iter (tests.test_datamodel_statealphabet.DnaStateAlphabetTest) ... ok
test_states_property (tests.test_datamodel_statealphabet.DnaStateAlphabetTest) ... ok
test_symbol_iter (tests.test_datamodel_statealphabet.DnaStateAlphabetTest) ... ok
test_symbol_state_pair_iter (tests.test_datamodel_statealphabet.DnaStateAlphabetTest) ... ok
test_ambiguous_state_definitions (tests.test_datamodel_statealphabet.NucleotideStateAlphabetTest) ... ok
test_canonical_symbol_state_map (tests.test_datamodel_statealphabet.NucleotideStateAlphabetTest) ... ok
test_canonical_symbols_property (tests.test_datamodel_statealphabet.NucleotideStateAlphabetTest) ... ok
test_compiled_lookup_immutability (tests.test_datamodel_statealphabet.NucleotideStateAlphabetTest) ... ok
test_full_symbol_state_map (tests.test_datamodel_statealphabet.NucleotideStateAlphabetTest) ... ok
test_fundamental_state_definitions (tests.test_datamodel_statealphabet.NucleotideStateAlphabetTest) ... ok
test_get_canonical_symbol_for_symbol (tests.test_datamodel_statealphabet.NucleotideStateAlphabetTest) ... ok
test_get_fundamental_states_for_symbols (tests.test_datamodel_statealphabet.NucleotideStateAlphabetTest) ... ok
test_get_states_for_symbols (tests.test_datamodel_statealphabet.NucleotideStateAlphabetTest) ... ok
test_getitem (tests.test_datamodel_statealphabet.NucleotideStateAlphabetTest) ... ok
test_match_state (tests.test_datamodel_statealphabet.NucleotideStateAlphabetTest) ... ok
test_no_data_state (tests.test_datamodel_statealphabet.NucleotideStateAlphabetTest) ... ok
test_on_the_fly_creation_of_multistate (tests.test_datamodel_statealphabet.NucleotideStateAlphabetTest) ... ok
test_polymorphic_state_definitions (tests.test_datamodel_statealphabet.NucleotideStateAlphabetTest) ... ok
test_state_denomination (tests.test_datamodel_statealphabet.NucleotideStateAlphabetTest) ... ok
test_state_iter (tests.test_datamodel_statealphabet.NucleotideStateAlphabetTest) ... ok
test_states_property (tests.test_datamodel_statealphabet.NucleotideStateAlphabetTest) ... ok
test_symbol_iter (tests.test_datamodel_statealphabet.NucleotideStateAlphabetTest) ... ok
test_symbol_state_pair_iter (tests.test_datamodel_statealphabet.NucleotideStateAlphabetTest) ... ok
test_ambiguous_state_definitions (tests.test_datamodel_statealphabet.ProteinStateAlphabetTest) ... ok
test_canonical_symbol_state_map (tests.test_datamodel_statealphabet.ProteinStateAlphabetTest) ... ok
test_canonical_symbols_property (tests.test_datamodel_statealphabet.ProteinStateAlphabetTest) ... ok
test_compiled_lookup_immutability (tests.test_datamodel_statealphabet.ProteinStateAlphabetTest) ... ok
test_full_symbol_state_map (tests.test_datamodel_statealphabet.ProteinStateAlphabetTest) ... ok
test_fundamental_state_definitions (tests.test_datamodel_statealphabet.ProteinStateAlphabetTest) ... ok
test_get_canonical_symbol_for_symbol (tests.test_datamodel_statealphabet.ProteinStateAlphabetTest) ... ok
test_get_fundamental_states_for_symbols (tests.test_datamodel_statealphabet.ProteinStateAlphabetTest) ... ok
test_get_states_for_symbols (tests.test_datamodel_statealphabet.ProteinStateAlphabetTest) ... ok
test_getitem (tests.test_datamodel_statealphabet.ProteinStateAlphabetTest) ... ok
test_match_state (tests.test_datamodel_statealphabet.ProteinStateAlphabetTest) ... ok
test_no_data_state (tests.test_datamodel_statealphabet.ProteinStateAlphabetTest) ... ok
test_on_the_fly_creation_of_multistate (tests.test_datamodel_statealphabet.ProteinStateAlphabetTest) ... ok
test_polymorphic_state_definitions (tests.test_datamodel_statealphabet.ProteinStateAlphabetTest) ... ok
test_state_denomination (tests.test_datamodel_statealphabet.ProteinStateAlphabetTest) ... ok
test_state_iter (tests.test_datamodel_statealphabet.ProteinStateAlphabetTest) ... ok
test_states_property (tests.test_datamodel_statealphabet.ProteinStateAlphabetTest) ... ok
test_symbol_iter (tests.test_datamodel_statealphabet.ProteinStateAlphabetTest) ... ok
test_symbol_state_pair_iter (tests.test_datamodel_statealphabet.ProteinStateAlphabetTest) ... ok
test_ambiguous_state_definitions (tests.test_datamodel_statealphabet.RnaStateAlphabetTest) ... ok
test_canonical_symbol_state_map (tests.test_datamodel_statealphabet.RnaStateAlphabetTest) ... ok
test_canonical_symbols_property (tests.test_datamodel_statealphabet.RnaStateAlphabetTest) ... ok
test_compiled_lookup_immutability (tests.test_datamodel_statealphabet.RnaStateAlphabetTest) ... ok
test_full_symbol_state_map (tests.test_datamodel_statealphabet.RnaStateAlphabetTest) ... ok
test_fundamental_state_definitions (tests.test_datamodel_statealphabet.RnaStateAlphabetTest) ... ok
test_get_canonical_symbol_for_symbol (tests.test_datamodel_statealphabet.RnaStateAlphabetTest) ... ok
test_get_fundamental_states_for_symbols (tests.test_datamodel_statealphabet.RnaStateAlphabetTest) ... ok
test_get_states_for_symbols (tests.test_datamodel_statealphabet.RnaStateAlphabetTest) ... ok
test_getitem (tests.test_datamodel_statealphabet.RnaStateAlphabetTest) ... ok
test_match_state (tests.test_datamodel_statealphabet.RnaStateAlphabetTest) ... ok
test_no_data_state (tests.test_datamodel_statealphabet.RnaStateAlphabetTest) ... ok
test_on_the_fly_creation_of_multistate (tests.test_datamodel_statealphabet.RnaStateAlphabetTest) ... ok
test_polymorphic_state_definitions (tests.test_datamodel_statealphabet.RnaStateAlphabetTest) ... ok
test_state_denomination (tests.test_datamodel_statealphabet.RnaStateAlphabetTest) ... ok
test_state_iter (tests.test_datamodel_statealphabet.RnaStateAlphabetTest) ... ok
test_states_property (tests.test_datamodel_statealphabet.RnaStateAlphabetTest) ... ok
test_symbol_iter (tests.test_datamodel_statealphabet.RnaStateAlphabetTest) ... ok
test_symbol_state_pair_iter (tests.test_datamodel_statealphabet.RnaStateAlphabetTest) ... ok
test_construct_from_another (tests.test_datamodel_taxon.TaxonCloning) ... ok
test_construct_from_another_with_complex_annotations (tests.test_datamodel_taxon.TaxonCloning) ... ok
test_construct_from_another_with_simple_annotations (tests.test_datamodel_taxon.TaxonCloning) ... ok
test_simple_copy (tests.test_datamodel_taxon.TaxonCloning) ... ok
test_taxon_namespace_scoped_copy (tests.test_datamodel_taxon.TaxonCloning) ... ok
test_equal (tests.test_datamodel_taxon.TaxonIdentity) ... ok
test_hash_dict_membership (tests.test_datamodel_taxon.TaxonIdentity) ... ok
test_hash_set_membership (tests.test_datamodel_taxon.TaxonIdentity) ... ok
test_construct_from_another (tests.test_datamodel_taxon.TaxonNamespaceCloning) ... ok
test_construct_from_another_different_label (tests.test_datamodel_taxon.TaxonNamespaceCloning) ... ok
test_construct_from_another_with_complex_annotations (tests.test_datamodel_taxon.TaxonNamespaceCloning) ... ok
test_construct_from_another_with_simple_annotations (tests.test_datamodel_taxon.TaxonNamespaceCloning) ... ok
test_construct_from_changed_label (tests.test_datamodel_taxon.TaxonNamespaceCloning) ... ok
test_deepcopy_from_another (tests.test_datamodel_taxon.TaxonNamespaceCloning) ... ok
test_deepcopy_from_another_with_complex_annotations (tests.test_datamodel_taxon.TaxonNamespaceCloning) ... ok
test_deepcopy_from_another_with_simple_annotations (tests.test_datamodel_taxon.TaxonNamespaceCloning) ... ok
test_taxon_namespace_scoped_copy (tests.test_datamodel_taxon.TaxonNamespaceCloning) ... ok
test_hash_dict_membership (tests.test_datamodel_taxon.TaxonNamespaceIdentity) ... ok
test_hash_set_membership (tests.test_datamodel_taxon.TaxonNamespaceIdentity) ... ok
test_add_taxa (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_add_taxa_duplicate (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_add_taxon (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_add_taxon_duplicate (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_basic_adding (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_basic_adding_to_immutable (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_case_insensitive_get_taxa_by_label (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_case_insensitive_get_taxon_by_label (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_case_insensitive_require_taxon_by_label1 (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_case_insensitive_require_taxon_by_label2 (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_clear (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_contains_taxa (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_delete_by_index (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_discard_taxon_label (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_discard_taxon_label_case_insensitive (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_discard_taxon_label_case_sensitive (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_discard_taxon_label_error (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_findall_multiple (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... /tmp/guix-build-python-dendropy-4.5.1.drv-0/source/tests/test_datamodel_taxon.py:371: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.10 it will stop working
  self.assertTrue(isinstance(taxa, collections.Iterable))
ok
test_findall_not_found (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_get_nonexistant_taxa_by_label (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_get_nonexistant_taxon_by_label (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_get_taxa_by_label (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_get_taxon_by_label (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_getitem_by_index (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_getitem_by_index_error (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_getitem_by_label_error (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_getitem_slices (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_has_label (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_has_label_case_sensitivity (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_has_labels (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_has_labels_case_sensitivity (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_initialize_from_str_list (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_initialize_from_taxon_list (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_initialize_other_taxon_namespace (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_iter1 (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_iter2 (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_len (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_new_taxa (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_new_taxa_to_immutable (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_new_taxon (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_new_taxon_to_immutable (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_no_contains_taxa (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_no_has_label (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_no_has_labels (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_remove_taxon (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_remove_taxon_error (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_remove_taxon_label (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_remove_taxon_label_case_insensitive (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_remove_taxon_label_error (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_require_taxon_by_label_add (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_require_taxon_by_label_add_to_immutable (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_require_taxon_by_label_noadd (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_reverse (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_reverse_iter (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_reversed (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_sort (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_sorted (tests.test_datamodel_taxon.TaxonNamespaceTaxonManagement) ... ok
test_cloning_construction_with_taxon_namespace (tests.test_datamodel_tree_construction_copying_and_identity.TestSpecialTreeConstruction) ... ok
test_construction_from_another_tree_different_label (tests.test_datamodel_tree_construction_copying_and_identity.TestSpecialTreeConstruction) ... ok
test_construction_from_given_seed_node (tests.test_datamodel_tree_construction_copying_and_identity.TestSpecialTreeConstruction) ... ok
test_copy (tests.test_datamodel_tree_construction_copying_and_identity.TestTreeCopying) ... ok
test_deepcopy_excluding_namespace (tests.test_datamodel_tree_construction_copying_and_identity.TestTreeCopying) ... ok
test_deepcopy_including_namespace (tests.test_datamodel_tree_construction_copying_and_identity.TestTreeCopying) ... ok
test_equal (tests.test_datamodel_tree_construction_copying_and_identity.TestTreeIdentity) ... ok
test_hash_dict_membership (tests.test_datamodel_tree_construction_copying_and_identity.TestTreeIdentity) ... ok
test_hash_set_membership (tests.test_datamodel_tree_construction_copying_and_identity.TestTreeIdentity) ... ok
test_deepcopy (tests.test_datamodel_tree_edge_fundamentals.EdgeCloning) ... ok
test_unsupported_copy (tests.test_datamodel_tree_edge_fundamentals.EdgeCloning) ... ok
test_equal (tests.test_datamodel_tree_edge_fundamentals.EdgeIdentity) ... ok
test_hash_dict_membership (tests.test_datamodel_tree_edge_fundamentals.EdgeIdentity) ... ok
test_hash_set_membership (tests.test_datamodel_tree_edge_fundamentals.EdgeIdentity) ... ok
test_edge_head_node_setting (tests.test_datamodel_tree_edge_fundamentals.EdgeNodeManagement) ... ok
test_edge_tail_node_setting (tests.test_datamodel_tree_edge_fundamentals.EdgeNodeManagement) ... ok
test_deepcopy (tests.test_datamodel_tree_node_fundamentals.NodeCloning) ... ok
test_unsupported_copy (tests.test_datamodel_tree_node_fundamentals.NodeCloning) ... ok
test_equal (tests.test_datamodel_tree_node_fundamentals.NodeIdentity) ... ok
test_hash_dict_membership (tests.test_datamodel_tree_node_fundamentals.NodeIdentity) ... ok
test_hash_set_membership (tests.test_datamodel_tree_node_fundamentals.NodeIdentity) ... ok
test_basic_construction (tests.test_datamodel_tree_node_fundamentals.TestNodeConstruction) ... ok
test_add_child (tests.test_datamodel_tree_node_fundamentals.TestNodeSetChildNodes) ... ok
test_edge_head_node_setting (tests.test_datamodel_tree_node_fundamentals.TestNodeSetChildNodes) ... ok
test_insert_child_at_pos (tests.test_datamodel_tree_node_fundamentals.TestNodeSetChildNodes) ... ok
test_new_child (tests.test_datamodel_tree_node_fundamentals.TestNodeSetChildNodes) ... ok
test_new_child_at_pos (tests.test_datamodel_tree_node_fundamentals.TestNodeSetChildNodes) ... ok
test_parent_node_setting (tests.test_datamodel_tree_node_fundamentals.TestNodeSetChildNodes) ... ok
test_redundant_add (tests.test_datamodel_tree_node_fundamentals.TestNodeSetChildNodes) ... ok
test_redundant_insert_child_at_pos (tests.test_datamodel_tree_node_fundamentals.TestNodeSetChildNodes) ... ok
test_redundant_set (tests.test_datamodel_tree_node_fundamentals.TestNodeSetChildNodes) ... ok
test_remove_child (tests.test_datamodel_tree_node_fundamentals.TestNodeSetChildNodes) ... ok
test_set_child_nodes (tests.test_datamodel_tree_node_fundamentals.TestNodeSetChildNodes) ... ok
test_apply (tests.test_datamodel_tree_structure_and_iteration.TestTreeApply) ... ok
test_ageorder_node_iter_unfiltered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_ageorder_node_iter_unfiltered_no_leaves (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_ageorder_node_iter_unfiltered_reversed (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_ancestor_iterator_exclusive_filtered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_ancestor_iterator_exclusive_unfiltered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_ancestor_iterator_inclusive_filtered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_ancestor_iterator_inclusive_unfiltered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_child_edge_iterator_filtered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_child_edge_iterator_unfiltered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_child_node_iterator_filtered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_child_node_iterator_unfiltered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_default_iteration (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_inorder_edge_iter_filtered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_inorder_edge_iter_unfiltered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_inorder_node_iter_filtered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_inorder_node_iter_unfiltered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_leaf_edge_iter_filtered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_leaf_edge_iter_unfiltered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_leaf_node_iter_filtered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_leaf_node_iter_unfiltered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_levelorder_edge_iter_filtered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_levelorder_edge_iter_unfiltered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_levelorder_node_iter_filtered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_levelorder_node_iter_unfiltered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_node_ages (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_postorder_edge_iter_filtered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_postorder_edge_iter_unfiltered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_postorder_internal_edge_iter_filtered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_postorder_internal_edge_iter_unfiltered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_postorder_internal_edge_iter_without_root_filtered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_postorder_internal_edge_iter_without_root_unfiltered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_postorder_internal_node_iter_filtered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_postorder_internal_node_iter_unfiltered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_postorder_internal_node_iter_without_root_filtered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_postorder_internal_node_iter_without_root_unfiltered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_postorder_node_iter_filtered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_postorder_node_iter_unfiltered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_preorder_edge_iter_filtered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_preorder_edge_iter_unfiltered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_preorder_internal_edge_iter_filtered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_preorder_internal_edge_iter_unfiltered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_preorder_internal_edge_iter_without_root_filtered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_preorder_internal_edge_iter_without_root_unfiltered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_preorder_internal_node_iter_filtered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_preorder_internal_node_iter_unfiltered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_preorder_internal_node_iter_without_root_filtered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_preorder_internal_node_iter_without_root_unfiltered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_preorder_node_iter_filtered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_preorder_node_iter_unfiltered (tests.test_datamodel_tree_structure_and_iteration.TestTreeIterators) ... ok
test_get_child_nodes (tests.test_datamodel_tree_structure_and_iteration.TestTreeNodeAndEdgeCollections) ... ok
test_get_edges (tests.test_datamodel_tree_structure_and_iteration.TestTreeNodeAndEdgeCollections) ... ok
test_get_edges_filtered (tests.test_datamodel_tree_structure_and_iteration.TestTreeNodeAndEdgeCollections) ... ok
test_get_internal_edges_no_root (tests.test_datamodel_tree_structure_and_iteration.TestTreeNodeAndEdgeCollections) ... ok
test_get_internal_edges_with_root (tests.test_datamodel_tree_structure_and_iteration.TestTreeNodeAndEdgeCollections) ... ok
test_get_internal_nodes_no_root (tests.test_datamodel_tree_structure_and_iteration.TestTreeNodeAndEdgeCollections) ... ok
test_get_internal_nodes_with_root (tests.test_datamodel_tree_structure_and_iteration.TestTreeNodeAndEdgeCollections) ... ok
test_get_leaf_edges (tests.test_datamodel_tree_structure_and_iteration.TestTreeNodeAndEdgeCollections) ... ok
test_get_leaf_nodes (tests.test_datamodel_tree_structure_and_iteration.TestTreeNodeAndEdgeCollections) ... ok
test_get_nodes (tests.test_datamodel_tree_structure_and_iteration.TestTreeNodeAndEdgeCollections) ... ok
test_get_nodes_filtered (tests.test_datamodel_tree_structure_and_iteration.TestTreeNodeAndEdgeCollections) ... ok
test_find_node (tests.test_datamodel_tree_structure_and_iteration.TestTreeNodeFinders) ... ok
test_find_node_nonexisting (tests.test_datamodel_tree_structure_and_iteration.TestTreeNodeFinders) ... ok
test_find_node_with_label (tests.test_datamodel_tree_structure_and_iteration.TestTreeNodeFinders) ... ok
test_find_node_with_label_nonexisting (tests.test_datamodel_tree_structure_and_iteration.TestTreeNodeFinders) ... ok
test_is_rooted (tests.test_datamodel_tree_structure_and_iteration.TreeRootingState) ... ok
test_is_unrooted (tests.test_datamodel_tree_structure_and_iteration.TreeRootingState) ... ok
test_migrate_taxon_namespace_mapping (tests.test_datamodel_tree_taxon_management.TestTreeMigrateAndReconstructTaxonNamespace) ... ok
test_migrate_taxon_namespace_non_unifying (tests.test_datamodel_tree_taxon_management.TestTreeMigrateAndReconstructTaxonNamespace) ... ok
test_migrate_taxon_namespace_unifying_case_insensitive (tests.test_datamodel_tree_taxon_management.TestTreeMigrateAndReconstructTaxonNamespace) ... ok
test_migrate_taxon_namespace_unifying_case_sensitive (tests.test_datamodel_tree_taxon_management.TestTreeMigrateAndReconstructTaxonNamespace) ... ok
test_migrate_taxon_namespace_with_redundant_taxa (tests.test_datamodel_tree_taxon_management.TestTreeMigrateAndReconstructTaxonNamespace) ... ok
test_noop_migrate_taxon_namespace (tests.test_datamodel_tree_taxon_management.TestTreeMigrateAndReconstructTaxonNamespace) ... ok
test_noop_taxon_namespace_reconstruction (tests.test_datamodel_tree_taxon_management.TestTreeMigrateAndReconstructTaxonNamespace) ... ok
test_randomly_assign_taxa (tests.test_datamodel_tree_taxon_management.TestTreeMigrateAndReconstructTaxonNamespace) ... ok
test_reconstruct_taxon_namespace_mapping (tests.test_datamodel_tree_taxon_management.TestTreeMigrateAndReconstructTaxonNamespace) ... ok
test_reconstruct_taxon_namespace_non_unifying (tests.test_datamodel_tree_taxon_management.TestTreeMigrateAndReconstructTaxonNamespace) ... ok
test_reconstruct_taxon_namespace_unifying_case_insensitive (tests.test_datamodel_tree_taxon_management.TestTreeMigrateAndReconstructTaxonNamespace) ... ok
test_reconstruct_taxon_namespace_unifying_case_sensitive (tests.test_datamodel_tree_taxon_management.TestTreeMigrateAndReconstructTaxonNamespace) ... ok
test_reconstruct_taxon_namespace_with_redundant_taxa (tests.test_datamodel_tree_taxon_management.TestTreeMigrateAndReconstructTaxonNamespace) ... ok
test_simple_migrate_taxon_namespace (tests.test_datamodel_tree_taxon_management.TestTreeMigrateAndReconstructTaxonNamespace) ... ok
test_unassign_taxa (tests.test_datamodel_tree_taxon_management.TestTreeMigrateAndReconstructTaxonNamespace) ... ok
test_basic_purge (tests.test_datamodel_tree_taxon_management.TestTreePurgeTaxonNamespace) ... ok
test_noop_purge (tests.test_datamodel_tree_taxon_management.TestTreePurgeTaxonNamespace) ... ok
test_basic_taxa (tests.test_datamodel_tree_taxon_management.TestTreeTaxa) ... ok
test_noop_update (tests.test_datamodel_tree_taxon_management.TestTreeUpdateTaxonNamespace) ... ok
test_noop_update_with_no_taxa (tests.test_datamodel_tree_taxon_management.TestTreeUpdateTaxonNamespace) ... ok
test_update_taxon_namespace (tests.test_datamodel_tree_taxon_management.TestTreeUpdateTaxonNamespace) ... ok
test_add_tree (tests.test_datamodel_treearray.TreeArrayBasicTreeAccession) ... ok
test_pscores_with_gaps_as_missing (tests.test_fitch.FitchTest) ... ok
test_pscores_with_gaps_as_new_state (tests.test_fitch.FitchTest) ... ok
test_fixed_species_tree_fitting (tests.test_multispeciescoalescent.MultispeciesCoalescentBasicTestCase) ... ok
test1 (tests.test_multispeciescoalescent.MultispeciesCoalescentFixedSingleTreesCalculationTestCase) ... ok
test_pscores_with_dna_data_and_gaps_as_missing (tests.test_parsimony_scoring.ParsimonyScoringTest) ... ok
test_pscores_with_dna_data_and_gaps_as_new_states (tests.test_parsimony_scoring.ParsimonyScoringTest) ... ok
test_pscores_with_standard_data_and_gaps_as_missing (tests.test_parsimony_scoring.ParsimonyScoringTest) ... ok
test_pscores_with_standard_data_and_gaps_as_new_states (tests.test_parsimony_scoring.ParsimonyScoringTest) ... ok
test_distances (tests.test_phylogenetic_distance_matrix.NodeToNodeDistancesTest) ... /tmp/guix-build-python-dendropy-4.5.1.drv-0/source/tests/test_phylogenetic_distance_matrix.py:826: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/guix-build-python-dendropy-4.5.1.drv-0/source/tests/support/../data/other/hiv1.node-to-node-dists.csv' mode='r' encoding='UTF-8'>
  reference_table = container.DataTable.from_csv(
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/tmp/guix-build-python-dendropy-4.5.1.drv-0/source/tests/test_phylogenetic_distance_matrix.py:826: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/guix-build-python-dendropy-4.5.1.drv-0/source/tests/support/../data/other/pythonidae.mle.node-to-node-dists.csv' mode='r' encoding='UTF-8'>
  reference_table = container.DataTable.from_csv(
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/tmp/guix-build-python-dendropy-4.5.1.drv-0/source/tests/test_phylogenetic_distance_matrix.py:826: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/guix-build-python-dendropy-4.5.1.drv-0/source/tests/support/../data/other/hiv1.unweighted.node-to-node-dists.csv' mode='r' encoding='UTF-8'>
  reference_table = container.DataTable.from_csv(
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/tmp/guix-build-python-dendropy-4.5.1.drv-0/source/tests/test_phylogenetic_distance_matrix.py:826: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/guix-build-python-dendropy-4.5.1.drv-0/source/tests/support/../data/other/pythonidae.mle.unweighted.node-to-node-dists.csv' mode='r' encoding='UTF-8'>
  reference_table = container.DataTable.from_csv(
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_mrca (tests.test_phylogenetic_distance_matrix.NodeToNodeDistancesTest) ... ok
test_njtree_from_distance_matrices (tests.test_phylogenetic_distance_matrix.PdmNeighborJoiningTree) ... ok
test_njtree_from_weighted_and_unweighted_distances (tests.test_phylogenetic_distance_matrix.PdmNeighborJoiningTree) ... ok
test_upgma_average_from_distance_matrices (tests.test_phylogenetic_distance_matrix.PdmUpgmaTree) ... ok
test_clone (tests.test_phylogenetic_distance_matrix.PhylogeneticDistanceMatrixCloneTest) ... ok
test_all_distinct_mapped_taxa_pairs (tests.test_phylogenetic_distance_matrix.PhylogeneticDistanceMatrixCompileTest) ... ok
test_mapped_taxa (tests.test_phylogenetic_distance_matrix.PhylogeneticDistanceMatrixCompileTest) ... ok
test_max_pairwise_unweighted_distance_taxa (tests.test_phylogenetic_distance_matrix.PhylogeneticDistanceMatrixCompileTest) ... ok
test_max_pairwise_weighted_distance_taxa (tests.test_phylogenetic_distance_matrix.PhylogeneticDistanceMatrixCompileTest) ... ok
test_tree_length (tests.test_phylogenetic_distance_matrix.PhylogeneticDistanceMatrixCompileTest) ... ok
test_tree_num_edges (tests.test_phylogenetic_distance_matrix.PhylogeneticDistanceMatrixCompileTest) ... ok
test_tree_unweighted_normalized_pairwise_distance_collection (tests.test_phylogenetic_distance_matrix.PhylogeneticDistanceMatrixCompileTest) ... ok
test_tree_unweighted_normalized_pairwise_distance_query (tests.test_phylogenetic_distance_matrix.PhylogeneticDistanceMatrixCompileTest) ... ok
test_tree_unweighted_unnormalized_pairwise_distance_collection (tests.test_phylogenetic_distance_matrix.PhylogeneticDistanceMatrixCompileTest) ... ok
test_tree_unweighted_unnormalized_pairwise_distance_query (tests.test_phylogenetic_distance_matrix.PhylogeneticDistanceMatrixCompileTest) ... ok
test_tree_weighted_normalized_pairwise_distance_collection (tests.test_phylogenetic_distance_matrix.PhylogeneticDistanceMatrixCompileTest) ... ok
test_tree_weighted_normalized_pairwise_distance_query (tests.test_phylogenetic_distance_matrix.PhylogeneticDistanceMatrixCompileTest) ... ok
test_tree_weighted_unnormalized_pairwise_distance_collection (tests.test_phylogenetic_distance_matrix.PhylogeneticDistanceMatrixCompileTest) ... ok
test_tree_weighted_unnormalized_pairwise_distance_query (tests.test_phylogenetic_distance_matrix.PhylogeneticDistanceMatrixCompileTest) ... ok
test_read_existing_taxon_namespace_with_no_row_and_column_names (tests.test_phylogenetic_distance_matrix.PhylogeneticDistanceMatrixReader) ... ok
test_read_existing_taxon_namespace_with_no_row_and_no_column_names (tests.test_phylogenetic_distance_matrix.PhylogeneticDistanceMatrixReader) ... ok
test_read_existing_taxon_namespace_with_row_and_column_names (tests.test_phylogenetic_distance_matrix.PhylogeneticDistanceMatrixReader) ... ok
test_read_existing_taxon_namespace_with_row_and_no_column_names (tests.test_phylogenetic_distance_matrix.PhylogeneticDistanceMatrixReader) ... ok
test_read_new_taxon_namespace_with_no_row_and_column_names (tests.test_phylogenetic_distance_matrix.PhylogeneticDistanceMatrixReader) ... ok
test_read_new_taxon_namespace_with_no_row_and_no_column_names (tests.test_phylogenetic_distance_matrix.PhylogeneticDistanceMatrixReader) ... ok
test_read_new_taxon_namespace_with_row_and_column_names (tests.test_phylogenetic_distance_matrix.PhylogeneticDistanceMatrixReader) ... ok
test_read_new_taxon_namespace_with_row_and_no_column_names (tests.test_phylogenetic_distance_matrix.PhylogeneticDistanceMatrixReader) ... ok
test_shuffle (tests.test_phylogenetic_distance_matrix.PhylogeneticDistanceMatrixShuffleTest) ... ok
test_nonabundance_edgeweighted_unnormalized_mntd (tests.test_phylogenetic_distance_matrix.PhylogeneticEcologyStatsTests) ... ok
test_nonabundance_edgeweighted_unnormalized_mpd (tests.test_phylogenetic_distance_matrix.PhylogeneticEcologyStatsTests) ... ok
test_nonabundance_edgeweighted_unnormalized_ses_mntd (tests.test_phylogenetic_distance_matrix.PhylogeneticEcologyStatsTests) ... ok
test_nonabundance_edgeweighted_unnormalized_ses_mpd (tests.test_phylogenetic_distance_matrix.PhylogeneticEcologyStatsTests) ... ok
test1 (tests.test_phylogenetic_distance_matrix.PhylogeneticPathTest) ... ok
testPatDistFunc (tests.test_phylogenetic_distance_matrix.TreePatristicDistTest) ... ok
testPatDistMatrix (tests.test_phylogenetic_distance_matrix.TreePatristicDistTest) ... ok
testPopulationPairSummaryStatistics (tests.test_popgenstat.PopulationPairSummaryStatisticsTests) ... ok
test_average_number_of_pairwise_differences (tests.test_popgenstat.SinglePopTest) ... ok
test_nucleotide_diversity (tests.test_popgenstat.SinglePopTest) ... ok
test_num_segregating_sites (tests.test_popgenstat.SinglePopTest) ... ok
test_tajimas_d (tests.test_popgenstat.SinglePopTest) ... ok
test_wattersons_theta (tests.test_popgenstat.SinglePopTest) ... ok
testTajimasD (tests.test_popgenstat.TajimasDTests) ... ok
testTajimasD_with_missing (tests.test_popgenstat.TajimasDTests) ... ok
test_build_from_collection (tests.test_protractedspeciation.LineageQueueTestCase) ... ok
test_expected_duration_of_speciation (tests.test_protractedspeciation.ProtractedSpeciationCalcs) ... ok
test_maximum_probability_duration_of_speciation (tests.test_protractedspeciation.ProtractedSpeciationCalcs) ... ok
test_probability_of_duration_of_speciation (tests.test_protractedspeciation.ProtractedSpeciationCalcs) ... ok
test_lineage_tree_compilation (tests.test_protractedspeciation.ProtractedSpeciationLowLevelTreeCompilationFromEventsTestCase) ... ok
test_lineage_tree_incl_extinct_compilation (tests.test_protractedspeciation.ProtractedSpeciationLowLevelTreeCompilationFromEventsTestCase) ... ok
test_multi_tree_compilation (tests.test_protractedspeciation.ProtractedSpeciationLowLevelTreeCompilationFromEventsTestCase) ... ok
test_species_tree_of_oldest_lineages (tests.test_protractedspeciation.ProtractedSpeciationLowLevelTreeCompilationFromEventsTestCase) ... ok
test_species_tree_of_youngest_lineages (tests.test_protractedspeciation.ProtractedSpeciationLowLevelTreeCompilationFromEventsTestCase) ... ok
test_ (tests.test_protractedspeciation.ProtractedSpeciationProcessGeneration) ... ok
test_by_num_orthospecies (tests.test_protractedspeciation.ProtractedSpeciationProcessGeneration) ... ok
test_by_num_time (tests.test_protractedspeciation.ProtractedSpeciationProcessGeneration) ... ok
test_lineage_species_tip_correlation (tests.test_protractedspeciation.ProtractedSpeciationProcessGeneration) ... ok
test_taxon_assignment_and_namespace (tests.test_protractedspeciation.ProtractedSpeciationProcessGeneration) ... ok
test_single_pop_sfs (tests.test_sfs.SinglePopSfsTests) ... ok
testLeftTail (tests.test_statistics.FishersExactTests) ... ok
testRightTail (tests.test_statistics.FishersExactTests) ... ok
testTwoTail (tests.test_statistics.FishersExactTests) ... ok
testEmpiricalUnimodalHpd1 (tests.test_statistics.HpdCalculationTests) ... ok
testEmpiricalUnimodalHpd2 (tests.test_statistics.HpdCalculationTests) ... ok
testEmpiricalUnimodalHpd3 (tests.test_statistics.HpdCalculationTests) ... ok
testMedian (tests.test_statistics.TestMedian) ... ok
testVarianceCovariance1 (tests.test_statistics.TestVarianceCovariance) ... ok
testVarianceCovariance2 (tests.test_statistics.TestVarianceCovariance) ... ok
testCount1 (tests.test_tree_calculations_and_metrics.FrequencyOfBipartitionsTests) ... ok
testRaisesIndexError (tests.test_tree_calculations_and_metrics.FrequencyOfBipartitionsTests) ... ok
test_freqs2 (tests.test_tree_calculations_and_metrics.FrequencyOfBipartitionsTests) ... ok
test_tree_bipartitions_encoding (tests.test_tree_calculations_and_metrics.FrequencyOfBipartitionsTests) ... ok
testEuclideanDistances (tests.test_tree_calculations_and_metrics.TreeCompareTests) ... ok
testRobinsonFouldsDistances (tests.test_tree_calculations_and_metrics.TreeCompareTests) ... ok
testSymmetricDifferences (tests.test_tree_calculations_and_metrics.TreeCompareTests) ... ok
runTest (tests.test_tree_calculations_and_metrics.TreeEuclideanDistTest) ... ok
runTest (tests.test_tree_calculations_and_metrics.TreeSymmetricDistTest) ... ok
testNBar (tests.test_tree_calculations_and_metrics.TreeUnaryMetricsTest) ... ok
testPHGamma (tests.test_tree_calculations_and_metrics.TreeUnaryMetricsTest) ... ok
test_b1 (tests.test_tree_calculations_and_metrics.TreeUnaryMetricsTest) ... ok
test_colless_tree_imbalance (tests.test_tree_calculations_and_metrics.TreeUnaryMetricsTest) ... ok
test_colless_tree_imbalance2 (tests.test_tree_calculations_and_metrics.TreeUnaryMetricsTest) ... ok
test_gamma2 (tests.test_tree_calculations_and_metrics.TreeUnaryMetricsTest) ... ok
test_sackin_index (tests.test_tree_calculations_and_metrics.TreeUnaryMetricsTest) ... ok
test_treeness (tests.test_tree_calculations_and_metrics.TreeUnaryMetricsTest) ... ok
testTrees (tests.test_tree_from_splits.TreeFromBipartitionsTest) ... ok
runTest (tests.test_tree_operations_and_manipulations.CollapseConflictingTest) ... ok
testPruneTaxaRooted (tests.test_tree_operations_and_manipulations.PruneTest) ... ok
testPruneTaxaUnrooted (tests.test_tree_operations_and_manipulations.PruneTest) ... ok
testRetainTaxaRooted (tests.test_tree_operations_and_manipulations.PruneTest) ... ok
testRetainTaxaUnrooted (tests.test_tree_operations_and_manipulations.PruneTest) ... ok
runTest (tests.test_tree_operations_and_manipulations.RandomlyReorientTest) ... ok
runTest (tests.test_tree_operations_and_manipulations.RandomlyRotateTest) ... ok
test_resolve_polytomies (tests.test_tree_operations_and_manipulations.ResolvePolytomiesTestCase) ... ok
test_resolve_polytomies_at_root (tests.test_tree_operations_and_manipulations.ResolvePolytomiesTestCase) ... ok
testScaleEdgesNoLens (tests.test_tree_operations_and_manipulations.ScaleTest) ... ok
testScaleEdgesRealTest (tests.test_tree_operations_and_manipulations.ScaleTest) ... ok
test_extract_with_taxa (tests.test_tree_operations_and_manipulations.TestStructureExtraction) ... ok
test_extract_without_taxa (tests.test_tree_operations_and_manipulations.TestStructureExtraction) ... ok
test_filtered_leaf_extract (tests.test_tree_operations_and_manipulations.TestStructureExtraction) ... ok
test_full_extract (tests.test_tree_operations_and_manipulations.TestStructureExtraction) ... ok
test_special_case1 (tests.test_tree_operations_and_manipulations.TestStructureExtraction) ... ok
test_special_case2 (tests.test_tree_operations_and_manipulations.TestStructureExtraction) ... ok
testLadderizeLeft (tests.test_tree_operations_and_manipulations.TestTreeLadderization) ... ok
testLadderizeRight (tests.test_tree_operations_and_manipulations.TestTreeLadderization) ... ok
testMidpointRooting (tests.test_tree_operations_and_manipulations.TreeMidpointRootingTest) ... ok
test_reseeding (tests.test_tree_operations_and_manipulations.TreeRerootingTests) ... ok
test_collapse_basal_bifurcation (tests.test_tree_operations_and_manipulations.TreeRestructuring) ... ok
test_collapse_unweighted_edges (tests.test_tree_operations_and_manipulations.TreeRestructuring) ... ok
test_ladderize (tests.test_tree_operations_and_manipulations.TreeRestructuring) ... ok
test_prune_leaves_without_taxa (tests.test_tree_operations_and_manipulations.TreeRestructuring) ... ok
test_prune_nodes (tests.test_tree_operations_and_manipulations.TreeRestructuring) ... ok
test_prune_subtree (tests.test_tree_operations_and_manipulations.TreeRestructuring) ... ok
test_prune_taxa (tests.test_tree_operations_and_manipulations.TreeRestructuring) ... ok
test_prune_taxa_with_labels (tests.test_tree_operations_and_manipulations.TreeRestructuring) ... ok
test_randomly_reorient_tree (tests.test_tree_operations_and_manipulations.TreeRestructuring) ... ok
test_randomly_rotate (tests.test_tree_operations_and_manipulations.TreeRestructuring) ... ok
test_reroot_at_edge (tests.test_tree_operations_and_manipulations.TreeRestructuring) ... ok
test_reroot_at_node (tests.test_tree_operations_and_manipulations.TreeRestructuring) ... ok
test_reseed_at (tests.test_tree_operations_and_manipulations.TreeRestructuring) ... ok
test_resolve_polytomies (tests.test_tree_operations_and_manipulations.TreeRestructuring) ... ok
test_retain_taxa (tests.test_tree_operations_and_manipulations.TreeRestructuring) ... ok
test_retain_taxa_with_labels (tests.test_tree_operations_and_manipulations.TreeRestructuring) ... ok
test_scale_edges (tests.test_tree_operations_and_manipulations.TreeRestructuring) ... ok
test_set_edge_lengths_from_node_ages (tests.test_tree_operations_and_manipulations.TreeRestructuring) ... ok
test_suppress_unifurcations (tests.test_tree_operations_and_manipulations.TreeRestructuring) ... ok
test_to_outgroup_position (tests.test_tree_operations_and_manipulations.TreeRestructuring) ... ok
test_truncate_from_root (tests.test_tree_operations_and_manipulations.TreeRestructuring) ... ok
test_truncate_ultrametric (tests.test_tree_operations_and_manipulations.TruncateTree) ... ok
testFittedEdgesDeepCoalCount (tests.test_tree_reconciliation_and_discordance.ContainingTreeDeepCoalescenceSmall) ... ok
testFixedEdgesDeepCoalCount (tests.test_tree_reconciliation_and_discordance.ContainingTreeDeepCoalescenceSmall) ... ok
testFittedDeepCoalCounting (tests.test_tree_reconciliation_and_discordance.DeepCoalTest) ... ok
testGroupedDeepCoalCounting (tests.test_tree_reconciliation_and_discordance.DeepCoalTest) ... ok
test_basic_subtree_generation_and_caching (tests.test_tree_shape_kernel.AssemblageInducedTreeManagerTests) ... ok
test_comparison_add_trees_by_comparison (tests.test_tree_shape_kernel.AssemblageInducedTreeShapeKernelTests) ... ok
test_comparison_add_trees_directly (tests.test_tree_shape_kernel.AssemblageInducedTreeShapeKernelTests) ... ok
test_different_size_trees (tests.test_tree_shape_kernel.TreeShapeKernelBasicCalculationTest) ... ok
test_small_single (tests.test_tree_shape_kernel.TreeShapeKernelBasicCalculationTest) ... ok
test_compatibility (tests.test_tree_split_compatibility.TestSplitCompatibility) ... ok
test_product_of_credibilities (tests.test_tree_summarization_and_consensus.TestBasicCredibilityScoring) ... ok
test_split_distribution_max_sum_of_credibilities (tests.test_tree_summarization_and_consensus.TestBasicCredibilityScoring) ... ok
test_sum_of_credibilities (tests.test_tree_summarization_and_consensus.TestBasicCredibilityScoring) ... ok
testConsensus (tests.test_tree_summarization_and_consensus.TestConsensusTree) ... ok
testSimple (tests.test_tree_summarization_and_consensus.TestTopologyCounter) ... ok
testVariants (tests.test_tree_summarization_and_consensus.TestTopologyCounter) ... ok
testMeanNodeAgeSummarizationOnMCCT (tests.test_tree_summarization_and_consensus.TestTreeEdgeSummarization) ... ok

----------------------------------------------------------------------
Ran 842 tests in 1123.489s

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phase `check' succeeded after 1129.5 seconds
starting phase `sanity-check'
validating 'DendroPy' /gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib/python3.9/site-packages
...checking requirements: OK
...trying to load module dendropy: OK
phase `sanity-check' succeeded after 1.0 seconds
starting phase `patch-shebangs'
phase `patch-shebangs' succeeded after 0.0 seconds
starting phase `rename-pth-file'
phase `rename-pth-file' succeeded after 0.0 seconds
starting phase `strip'
stripping binaries in "/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib" with "strip" and flags ("--strip-unneeded" "--enable-deterministic-archives")
stripping binaries in "/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/bin" with "strip" and flags ("--strip-unneeded" "--enable-deterministic-archives")
phase `strip' succeeded after 0.2 seconds
starting phase `validate-runpath'
validating RUNPATH of 0 binaries in "/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/lib"...
validating RUNPATH of 0 binaries in "/gnu/store/ayr2994lpyprylj5axys5vm9wzw05rl7-python-dendropy-4.5.1/bin"...
phase `validate-runpath' succeeded after 0.1 seconds
starting phase `validate-documentation-location'
phase `validate-documentation-location' succeeded after 0.0 seconds
starting phase `delete-info-dir-file'
phase `delete-info-dir-file' succeeded after 0.0 seconds
starting phase `patch-dot-desktop-files'
phase `patch-dot-desktop-files' succeeded after 0.0 seconds
starting phase `make-dynamic-linker-cache'
phase `make-dynamic-linker-cache' succeeded after 0.0 seconds
starting phase `install-license-files'
installing 1 license files from '.'
phase `install-license-files' succeeded after 0.0 seconds
starting phase `reset-gzip-timestamps'
phase `reset-gzip-timestamps' succeeded after 0.0 seconds
starting phase `compress-documentation'
phase `compress-documentation' succeeded after 0.0 seconds