WARNING: (guile-user): imported module (guix build utils) overrides core binding `delete'
starting phase `separate-from-pid1'
build process now running as PID 10
phase `separate-from-pid1' succeeded after 0.0 seconds
starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/n6nr00bc2amax5vijpnl687x28g2n6yw-python-wrapper-3.10.7/bin:/gnu/store/1f1i4xqrnz45lb4yvjqfgd4ivy7cgnpx-python-cffi-1.17.1/bin:/gnu/store/lv2mxk63j4cci0p172znr1qalkwgj3i3-python-wheel-0.40.0/bin:/gnu/store/j5zgzgsmbjgywr67r86h1n6s4qiabv5q-tar-1.34/bin:/gnu/store/0r2fx1lr1h2i3cl1x5fw4s4ly95qspya-gzip-1.13/bin:/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/bin:/gnu/store/544ga5n6nq8y2961ihigra6n6a0r99nn-file-5.45/bin:/gnu/store/swmflx2bmqpf0drm167pxfpgyr7ckcam-diffutils-3.10/bin:/gnu/store/4jhlsg65s1zx90gnnfmaax52i8prnl45-patch-2.7.6/bin:/gnu/store/b5c62i99dsfa5j0j3f8g2j1xdi6fih22-findutils-4.9.0/bin:/gnu/store/vrl2r0ps24k1a6yap2chjylv5rhbndvr-gawk-5.3.0/bin:/gnu/store/3f0fjq25n2kwcmi0zyrf216wa6g8xpjw-zstd-1.5.2/bin:/gnu/store/3i4fr8riqw9azh1p4mqggl5vdz23kyr8-sed-4.8/bin:/gnu/store/7k8b93779dqpwcg2qjdvnf4nl43jv7hf-grep-3.11/bin:/gnu/store/fbaw0sb21gv02qq7gs9wg5y5wlpdgzih-xz-5.4.5/bin:/gnu/store/7h0mnlwalw23j9jmvz5n1i5mqkgb4d06-coreutils-9.1/bin:/gnu/store/lc6r1mh0jlcwixjziiw1zsx1my478rv1-make-4.4.1/bin:/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin:/gnu/store/3k6lyifyg024lk3gncsgf2gzjzvc70gv-ld-wrapper-0/bin:/gnu/store/ylgkrq9j1gyfig2y66srmgsbyh9w20d9-binutils-2.41/bin:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/bin:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/bin:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/sbin:/gnu/store/kayi1a27qjbizw1870vgpwd6mzcdggql-python-3.10.7/bin'
environment variable `GUIX_PYTHONPATH' set to `/gnu/store/1f1i4xqrnz45lb4yvjqfgd4ivy7cgnpx-python-cffi-1.17.1/lib/python3.10/site-packages:/gnu/store/l6a3qfh5pl5hvv9lc8qr6hmy1gp8p7mx-python-setuptools-67.6.1/lib/python3.10/site-packages:/gnu/store/lv2mxk63j4cci0p172znr1qalkwgj3i3-python-wheel-0.40.0/lib/python3.10/site-packages:/gnu/store/kayi1a27qjbizw1870vgpwd6mzcdggql-python-3.10.7/lib/python3.10/site-packages:/gnu/store/bzm5lrb73sh6xxdgn8sgc0aaxrwrklkf-python-pycparser-2.21/lib/python3.10/site-packages'
environment variable `PYTHONTZPATH' unset
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/1prv14v6jfnzzg7szm57690b7fr6sx33-zlib-1.3/include:/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/include:/gnu/store/544ga5n6nq8y2961ihigra6n6a0r99nn-file-5.45/include:/gnu/store/vrl2r0ps24k1a6yap2chjylv5rhbndvr-gawk-5.3.0/include:/gnu/store/fbaw0sb21gv02qq7gs9wg5y5wlpdgzih-xz-5.4.5/include:/gnu/store/lc6r1mh0jlcwixjziiw1zsx1my478rv1-make-4.4.1/include:/gnu/store/ylgkrq9j1gyfig2y66srmgsbyh9w20d9-binutils-2.41/include:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/include:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/include:/gnu/store/kayi1a27qjbizw1870vgpwd6mzcdggql-python-3.10.7/include:/gnu/store/svghsdn1x3fyili8ij791nn25zba9bpf-linux-libre-headers-5.15.49/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/1prv14v6jfnzzg7szm57690b7fr6sx33-zlib-1.3/include:/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/include:/gnu/store/544ga5n6nq8y2961ihigra6n6a0r99nn-file-5.45/include:/gnu/store/vrl2r0ps24k1a6yap2chjylv5rhbndvr-gawk-5.3.0/include:/gnu/store/fbaw0sb21gv02qq7gs9wg5y5wlpdgzih-xz-5.4.5/include:/gnu/store/lc6r1mh0jlcwixjziiw1zsx1my478rv1-make-4.4.1/include:/gnu/store/ylgkrq9j1gyfig2y66srmgsbyh9w20d9-binutils-2.41/include:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/include/c++:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/include:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/include:/gnu/store/kayi1a27qjbizw1870vgpwd6mzcdggql-python-3.10.7/include:/gnu/store/svghsdn1x3fyili8ij791nn25zba9bpf-linux-libre-headers-5.15.49/include'
environment variable `OBJC_INCLUDE_PATH' set to `/gnu/store/1prv14v6jfnzzg7szm57690b7fr6sx33-zlib-1.3/include:/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/include:/gnu/store/544ga5n6nq8y2961ihigra6n6a0r99nn-file-5.45/include:/gnu/store/vrl2r0ps24k1a6yap2chjylv5rhbndvr-gawk-5.3.0/include:/gnu/store/fbaw0sb21gv02qq7gs9wg5y5wlpdgzih-xz-5.4.5/include:/gnu/store/lc6r1mh0jlcwixjziiw1zsx1my478rv1-make-4.4.1/include:/gnu/store/ylgkrq9j1gyfig2y66srmgsbyh9w20d9-binutils-2.41/include:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/include:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/include:/gnu/store/kayi1a27qjbizw1870vgpwd6mzcdggql-python-3.10.7/include:/gnu/store/svghsdn1x3fyili8ij791nn25zba9bpf-linux-libre-headers-5.15.49/include'
environment variable `OBJCPLUS_INCLUDE_PATH' set to `/gnu/store/1prv14v6jfnzzg7szm57690b7fr6sx33-zlib-1.3/include:/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/include:/gnu/store/544ga5n6nq8y2961ihigra6n6a0r99nn-file-5.45/include:/gnu/store/vrl2r0ps24k1a6yap2chjylv5rhbndvr-gawk-5.3.0/include:/gnu/store/fbaw0sb21gv02qq7gs9wg5y5wlpdgzih-xz-5.4.5/include:/gnu/store/lc6r1mh0jlcwixjziiw1zsx1my478rv1-make-4.4.1/include:/gnu/store/ylgkrq9j1gyfig2y66srmgsbyh9w20d9-binutils-2.41/include:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/include/c++:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/include:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/include:/gnu/store/kayi1a27qjbizw1870vgpwd6mzcdggql-python-3.10.7/include:/gnu/store/svghsdn1x3fyili8ij791nn25zba9bpf-linux-libre-headers-5.15.49/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/1prv14v6jfnzzg7szm57690b7fr6sx33-zlib-1.3/lib:/gnu/store/1f1i4xqrnz45lb4yvjqfgd4ivy7cgnpx-python-cffi-1.17.1/lib:/gnu/store/l6a3qfh5pl5hvv9lc8qr6hmy1gp8p7mx-python-setuptools-67.6.1/lib:/gnu/store/lv2mxk63j4cci0p172znr1qalkwgj3i3-python-wheel-0.40.0/lib:/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/lib:/gnu/store/544ga5n6nq8y2961ihigra6n6a0r99nn-file-5.45/lib:/gnu/store/vrl2r0ps24k1a6yap2chjylv5rhbndvr-gawk-5.3.0/lib:/gnu/store/fbaw0sb21gv02qq7gs9wg5y5wlpdgzih-xz-5.4.5/lib:/gnu/store/ylgkrq9j1gyfig2y66srmgsbyh9w20d9-binutils-2.41/lib:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/lib:/gnu/store/vqdiyyqbrv4akp68pfya4j6m3pdbnhca-glibc-2.39-static/lib:/gnu/store/kayi1a27qjbizw1870vgpwd6mzcdggql-python-3.10.7/lib:/gnu/store/bzm5lrb73sh6xxdgn8sgc0aaxrwrklkf-python-pycparser-2.21/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/lib/locale'
environment variable `TZDIR' unset
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'C.UTF-8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
bwapy-0.1.4/
bwapy-0.1.4/LICENSE.md
bwapy-0.1.4/MANIFEST.in
bwapy-0.1.4/Makefile
bwapy-0.1.4/PKG-INFO
bwapy-0.1.4/README.md
bwapy-0.1.4/bwa/
bwapy-0.1.4/bwa/.git
bwapy-0.1.4/bwa/.gitignore
bwapy-0.1.4/bwa/.travis.yml
bwapy-0.1.4/bwa/COPYING
bwapy-0.1.4/bwa/ChangeLog
bwapy-0.1.4/bwa/Makefile
bwapy-0.1.4/bwa/NEWS.md
bwapy-0.1.4/bwa/QSufSort.c
bwapy-0.1.4/bwa/QSufSort.h
bwapy-0.1.4/bwa/README-alt.md
bwapy-0.1.4/bwa/README.md
bwapy-0.1.4/bwa/bamlite.c
bwapy-0.1.4/bwa/bamlite.h
bwapy-0.1.4/bwa/bntseq.c
bwapy-0.1.4/bwa/bntseq.h
bwapy-0.1.4/bwa/bwa.1
bwapy-0.1.4/bwa/bwa.c
bwapy-0.1.4/bwa/bwa.h
bwapy-0.1.4/bwa/bwakit/
bwapy-0.1.4/bwa/bwakit/README.md
bwapy-0.1.4/bwa/bwakit/bwa-postalt.js
bwapy-0.1.4/bwa/bwakit/run-HLA
bwapy-0.1.4/bwa/bwakit/run-bwamem
bwapy-0.1.4/bwa/bwakit/run-gen-ref
bwapy-0.1.4/bwa/bwakit/typeHLA-selctg.js
bwapy-0.1.4/bwa/bwakit/typeHLA.js
bwapy-0.1.4/bwa/bwakit/typeHLA.sh
bwapy-0.1.4/bwa/bwamem.c
bwapy-0.1.4/bwa/bwamem.h
bwapy-0.1.4/bwa/bwamem_extra.c
bwapy-0.1.4/bwa/bwamem_pair.c
bwapy-0.1.4/bwa/bwape.c
bwapy-0.1.4/bwa/bwase.c
bwapy-0.1.4/bwa/bwase.h
bwapy-0.1.4/bwa/bwaseqio.c
bwapy-0.1.4/bwa/bwashm.c
bwapy-0.1.4/bwa/bwt.c
bwapy-0.1.4/bwa/bwt.h
bwapy-0.1.4/bwa/bwt_gen.c
bwapy-0.1.4/bwa/bwt_lite.c
bwapy-0.1.4/bwa/bwt_lite.h
bwapy-0.1.4/bwa/bwtaln.c
bwapy-0.1.4/bwa/bwtaln.h
bwapy-0.1.4/bwa/bwtgap.c
bwapy-0.1.4/bwa/bwtgap.h
bwapy-0.1.4/bwa/bwtindex.c
bwapy-0.1.4/bwa/bwtsw2.h
bwapy-0.1.4/bwa/bwtsw2_aux.c
bwapy-0.1.4/bwa/bwtsw2_chain.c
bwapy-0.1.4/bwa/bwtsw2_core.c
bwapy-0.1.4/bwa/bwtsw2_main.c
bwapy-0.1.4/bwa/bwtsw2_pair.c
bwapy-0.1.4/bwa/example.c
bwapy-0.1.4/bwa/fastmap.c
bwapy-0.1.4/bwa/is.c
bwapy-0.1.4/bwa/kbtree.h
bwapy-0.1.4/bwa/khash.h
bwapy-0.1.4/bwa/kopen.c
bwapy-0.1.4/bwa/kseq.h
bwapy-0.1.4/bwa/ksort.h
bwapy-0.1.4/bwa/kstring.c
bwapy-0.1.4/bwa/kstring.h
bwapy-0.1.4/bwa/ksw.c
bwapy-0.1.4/bwa/ksw.h
bwapy-0.1.4/bwa/kthread.c
bwapy-0.1.4/bwa/kvec.h
bwapy-0.1.4/bwa/libbwa.a
bwapy-0.1.4/bwa/main.c
bwapy-0.1.4/bwa/malloc_wrap.c
bwapy-0.1.4/bwa/malloc_wrap.h
bwapy-0.1.4/bwa/maxk.c
bwapy-0.1.4/bwa/pemerge.c
bwapy-0.1.4/bwa/qualfa2fq.pl
bwapy-0.1.4/bwa/rle.c
bwapy-0.1.4/bwa/rle.h
bwapy-0.1.4/bwa/rope.c
bwapy-0.1.4/bwa/rope.h
bwapy-0.1.4/bwa/utils.c
bwapy-0.1.4/bwa/utils.h
bwapy-0.1.4/bwa/xa2multi.pl
bwapy-0.1.4/bwapy/
bwapy-0.1.4/bwapy/__init__.py
bwapy-0.1.4/bwapy/libbwa.py
bwapy-0.1.4/bwapy/libbwapy.c
bwapy-0.1.4/bwapy/memopts.c
bwapy-0.1.4/bwapy.egg-info/
bwapy-0.1.4/bwapy.egg-info/PKG-INFO
bwapy-0.1.4/bwapy.egg-info/SOURCES.txt
bwapy-0.1.4/bwapy.egg-info/dependency_links.txt
bwapy-0.1.4/bwapy.egg-info/entry_points.txt
bwapy-0.1.4/bwapy.egg-info/not-zip-safe
bwapy-0.1.4/bwapy.egg-info/requires.txt
bwapy-0.1.4/bwapy.egg-info/top_level.txt
bwapy-0.1.4/requirements.txt
bwapy-0.1.4/setup.cfg
bwapy-0.1.4/setup.py
phase `unpack' succeeded after 0.0 seconds
starting phase `relax-requirements'
phase `relax-requirements' succeeded after 0.0 seconds
starting phase `ensure-no-mtimes-pre-1980'
phase `ensure-no-mtimes-pre-1980' succeeded after 0.0 seconds
starting phase `enable-bytecode-determinism'
phase `enable-bytecode-determinism' succeeded after 0.0 seconds
starting phase `ensure-no-cythonized-files'
phase `ensure-no-cythonized-files' succeeded after 0.0 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
patch-shebang: ./bwa/bwakit/run-HLA: changing `/bin/bash' to `/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin/bash'
patch-shebang: ./bwa/bwakit/run-bwamem: warning: no binary for interpreter `perl' found in $PATH
patch-shebang: ./bwa/bwakit/run-gen-ref: changing `/bin/bash' to `/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin/bash'
patch-shebang: ./bwa/bwakit/typeHLA.sh: changing `/bin/bash' to `/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin/bash'
patch-shebang: ./bwa/qualfa2fq.pl: warning: no binary for interpreter `perl' found in $PATH
patch-shebang: ./bwa/xa2multi.pl: warning: no binary for interpreter `perl' found in $PATH
phase `patch-source-shebangs' succeeded after 0.0 seconds
starting phase `patch-generated-file-shebangs'
patch-shebang: ./bwa/bwakit/run-bwamem: warning: no binary for interpreter `perl' found in $PATH
patch-shebang: ./bwa/qualfa2fq.pl: warning: no binary for interpreter `perl' found in $PATH
patch-shebang: ./bwa/xa2multi.pl: warning: no binary for interpreter `perl' found in $PATH
phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `build'
running "python setup.py" with command "build" and parameters ()
running build
make: 'bwa/libbwa.a' is up to date.
creating build
creating build/lib.linux-x86_64-cpython-310
running build_py
creating build/lib.linux-x86_64-cpython-310/bwapy
copying bwapy/__init__.py -> build/lib.linux-x86_64-cpython-310/bwapy
copying bwapy/libbwa.py -> build/lib.linux-x86_64-cpython-310/bwapy
warning: build_py: byte-compiling is disabled, skipping.

running build_ext
building 'bwalib' extension
creating build/temp.linux-x86_64-cpython-310
creating build/temp.linux-x86_64-cpython-310/bwapy
gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -Ibwa -I/gnu/store/kayi1a27qjbizw1870vgpwd6mzcdggql-python-3.10.7/include/python3.10 -c bwapy/libbwapy.c -o build/temp.linux-x86_64-cpython-310/bwapy/libbwapy.o -pedantic -Wall -std=c99 -march=native -ffast-math -DUSE_SSE2 -DNDEBUG
gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -Ibwa -I/gnu/store/kayi1a27qjbizw1870vgpwd6mzcdggql-python-3.10.7/include/python3.10 -c bwapy/memopts.c -o build/temp.linux-x86_64-cpython-310/bwapy/memopts.o -pedantic -Wall -std=c99 -march=native -ffast-math -DUSE_SSE2 -DNDEBUG
gcc -shared -Wl,-rpath=/gnu/store/kayi1a27qjbizw1870vgpwd6mzcdggql-python-3.10.7/lib -fno-semantic-interposition build/temp.linux-x86_64-cpython-310/bwapy/libbwapy.o build/temp.linux-x86_64-cpython-310/bwapy/memopts.o bwa/libbwa.a -L/gnu/store/kayi1a27qjbizw1870vgpwd6mzcdggql-python-3.10.7/lib -lz -o build/lib.linux-x86_64-cpython-310/bwalib.cpython-310-x86_64-linux-gnu.so
phase `build' succeeded after 0.3 seconds
starting phase `install'
running "python setup.py" with command "install" and parameters ("--prefix=/gnu/store/da5b7hi4ba0q9zi22j9b465j98305bd9-python-bwapy-0.1.4" "--no-compile" "--single-version-externally-managed" "--root=/")
running install
/gnu/store/l6a3qfh5pl5hvv9lc8qr6hmy1gp8p7mx-python-setuptools-67.6.1/lib/python3.10/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
  warnings.warn(
running build
make: 'bwa/libbwa.a' is up to date.
running build_py
warning: build_py: byte-compiling is disabled, skipping.

running build_ext
running install_lib
creating /gnu/store/da5b7hi4ba0q9zi22j9b465j98305bd9-python-bwapy-0.1.4
creating /gnu/store/da5b7hi4ba0q9zi22j9b465j98305bd9-python-bwapy-0.1.4/lib
creating /gnu/store/da5b7hi4ba0q9zi22j9b465j98305bd9-python-bwapy-0.1.4/lib/python3.10
creating /gnu/store/da5b7hi4ba0q9zi22j9b465j98305bd9-python-bwapy-0.1.4/lib/python3.10/site-packages
copying build/lib.linux-x86_64-cpython-310/bwalib.cpython-310-x86_64-linux-gnu.so -> /gnu/store/da5b7hi4ba0q9zi22j9b465j98305bd9-python-bwapy-0.1.4/lib/python3.10/site-packages
creating /gnu/store/da5b7hi4ba0q9zi22j9b465j98305bd9-python-bwapy-0.1.4/lib/python3.10/site-packages/bwapy
copying build/lib.linux-x86_64-cpython-310/bwapy/__init__.py -> /gnu/store/da5b7hi4ba0q9zi22j9b465j98305bd9-python-bwapy-0.1.4/lib/python3.10/site-packages/bwapy
copying build/lib.linux-x86_64-cpython-310/bwapy/libbwa.py -> /gnu/store/da5b7hi4ba0q9zi22j9b465j98305bd9-python-bwapy-0.1.4/lib/python3.10/site-packages/bwapy
warning: install_lib: byte-compiling is disabled, skipping.

running install_egg_info
running egg_info
writing bwapy.egg-info/PKG-INFO
writing dependency_links to bwapy.egg-info/dependency_links.txt
writing entry points to bwapy.egg-info/entry_points.txt
writing requirements to bwapy.egg-info/requires.txt
writing top-level names to bwapy.egg-info/top_level.txt
reading manifest file 'bwapy.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'bwapy/LICENSE.md'
warning: manifest_maker: MANIFEST.in, line 7: unknown action 'include-recursive'

warning: no files found matching 'bwa/32mqualfa2fq.pl'
adding license file 'LICENSE.md'
writing manifest file 'bwapy.egg-info/SOURCES.txt'
Copying bwapy.egg-info to /gnu/store/da5b7hi4ba0q9zi22j9b465j98305bd9-python-bwapy-0.1.4/lib/python3.10/site-packages/bwapy-0.1.4-py3.10.egg-info
running install_scripts
Installing bwamempy script to /gnu/store/da5b7hi4ba0q9zi22j9b465j98305bd9-python-bwapy-0.1.4/bin
Listing '/gnu/store/da5b7hi4ba0q9zi22j9b465j98305bd9-python-bwapy-0.1.4'...
Listing '/gnu/store/da5b7hi4ba0q9zi22j9b465j98305bd9-python-bwapy-0.1.4/bin'...
Listing '/gnu/store/da5b7hi4ba0q9zi22j9b465j98305bd9-python-bwapy-0.1.4/lib'...
Listing '/gnu/store/da5b7hi4ba0q9zi22j9b465j98305bd9-python-bwapy-0.1.4/lib/python3.10'...
Listing '/gnu/store/da5b7hi4ba0q9zi22j9b465j98305bd9-python-bwapy-0.1.4/lib/python3.10/site-packages'...
Listing '/gnu/store/da5b7hi4ba0q9zi22j9b465j98305bd9-python-bwapy-0.1.4/lib/python3.10/site-packages/bwapy'...
Compiling '/gnu/store/da5b7hi4ba0q9zi22j9b465j98305bd9-python-bwapy-0.1.4/lib/python3.10/site-packages/bwapy/__init__.py'...
Compiling '/gnu/store/da5b7hi4ba0q9zi22j9b465j98305bd9-python-bwapy-0.1.4/lib/python3.10/site-packages/bwapy/libbwa.py'...
Listing '/gnu/store/da5b7hi4ba0q9zi22j9b465j98305bd9-python-bwapy-0.1.4/lib/python3.10/site-packages/bwapy-0.1.4-py3.10.egg-info'...
phase `install' succeeded after 0.2 seconds
starting phase `add-install-to-pythonpath'
phase `add-install-to-pythonpath' succeeded after 0.0 seconds
starting phase `add-install-to-path'
phase `add-install-to-path' succeeded after 0.0 seconds
starting phase `wrap'
find-files: /gnu/store/da5b7hi4ba0q9zi22j9b465j98305bd9-python-bwapy-0.1.4/sbin: No such file or directory
phase `wrap' succeeded after 0.0 seconds
starting phase `check'
running "python setup.py" with command "test" and parameters ()
running test
WARNING: Testing via this command is deprecated and will be removed in a future version. Users looking for a generic test entry point independent of test runner are encouraged to use tox.
/gnu/store/l6a3qfh5pl5hvv9lc8qr6hmy1gp8p7mx-python-setuptools-67.6.1/lib/python3.10/site-packages/setuptools/command/test.py:194: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`.
  ir_d = dist.fetch_build_eggs(dist.install_requires)
/gnu/store/l6a3qfh5pl5hvv9lc8qr6hmy1gp8p7mx-python-setuptools-67.6.1/lib/python3.10/site-packages/setuptools/command/test.py:195: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`.
  tr_d = dist.fetch_build_eggs(dist.tests_require or [])
/gnu/store/l6a3qfh5pl5hvv9lc8qr6hmy1gp8p7mx-python-setuptools-67.6.1/lib/python3.10/site-packages/setuptools/command/test.py:196: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`.
  er_d = dist.fetch_build_eggs(
running egg_info
writing bwapy.egg-info/PKG-INFO
writing dependency_links to bwapy.egg-info/dependency_links.txt
writing entry points to bwapy.egg-info/entry_points.txt
writing requirements to bwapy.egg-info/requires.txt
writing top-level names to bwapy.egg-info/top_level.txt
reading manifest file 'bwapy.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'bwapy/LICENSE.md'
warning: manifest_maker: MANIFEST.in, line 7: unknown action 'include-recursive'

warning: no files found matching 'bwa/32mqualfa2fq.pl'
adding license file 'LICENSE.md'
writing manifest file 'bwapy.egg-info/SOURCES.txt'
running build_ext
copying build/lib.linux-x86_64-cpython-310/bwalib.cpython-310-x86_64-linux-gnu.so -> 

----------------------------------------------------------------------
Ran 0 tests in 0.000s

OK
phase `check' succeeded after 0.2 seconds
starting phase `patch-shebangs'
phase `patch-shebangs' succeeded after 0.0 seconds
starting phase `rename-pth-file'
phase `rename-pth-file' succeeded after 0.0 seconds
starting phase `strip'
stripping binaries in "/gnu/store/da5b7hi4ba0q9zi22j9b465j98305bd9-python-bwapy-0.1.4/lib" with "strip" and flags ("--strip-unneeded" "--enable-deterministic-archives")
stripping binaries in "/gnu/store/da5b7hi4ba0q9zi22j9b465j98305bd9-python-bwapy-0.1.4/bin" with "strip" and flags ("--strip-unneeded" "--enable-deterministic-archives")
phase `strip' succeeded after 0.0 seconds
starting phase `validate-runpath'
validating RUNPATH of 1 binaries in "/gnu/store/da5b7hi4ba0q9zi22j9b465j98305bd9-python-bwapy-0.1.4/lib"...
validating RUNPATH of 0 binaries in "/gnu/store/da5b7hi4ba0q9zi22j9b465j98305bd9-python-bwapy-0.1.4/bin"...
phase `validate-runpath' succeeded after 0.0 seconds
starting phase `validate-documentation-location'
phase `validate-documentation-location' succeeded after 0.0 seconds
starting phase `delete-info-dir-file'
phase `delete-info-dir-file' succeeded after 0.0 seconds
starting phase `patch-dot-desktop-files'
phase `patch-dot-desktop-files' succeeded after 0.0 seconds
starting phase `make-dynamic-linker-cache'
phase `make-dynamic-linker-cache' succeeded after 0.0 seconds
starting phase `install-license-files'
installing 1 license files from '.'
phase `install-license-files' succeeded after 0.0 seconds
starting phase `reset-gzip-timestamps'
phase `reset-gzip-timestamps' succeeded after 0.0 seconds
starting phase `compress-documentation'
phase `compress-documentation' succeeded after 0.0 seconds