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environment variable `PATH' set to `/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/bin:/gnu/store/3lx5rw6aazp1cskcbmhd3mb842zanj88-tar-1.32/bin:/gnu/store/43y9wjllnr1sczwlfi0vxh27zp28zixh-gzip-1.10/bin:/gnu/store/mhbai8872azipnxr9lw3gr8jqxf6348j-bzip2-1.0.8/bin:/gnu/store/b2m3hnb7gr526jcs8xj0d7fig73qlhv0-xz-5.2.4/bin:/gnu/store/ivj4vx0mc2fz0ipi5knb32r6d992y0b0-file-5.38/bin:/gnu/store/hn05v0h7qiqdq59avr247a3wd8kpsvg0-diffutils-3.7/bin:/gnu/store/4s297bh5gg8dixd9n6xkw2z73cxd1v91-patch-2.7.6/bin:/gnu/store/9gawha19xlpkz9qk6z9lcgfxfq5bj27a-findutils-4.7.0/bin:/gnu/store/3d1n6zsw6zli7agb0ica7x4145haga4z-gawk-5.0.1/bin:/gnu/store/bqcvgh7q4316fynb9wg6akvlk9ikdjj5-sed-4.8/bin:/gnu/store/iqxcm511fivbrlik4i7ly3dxn53qm689-grep-3.4/bin:/gnu/store/x5z9z2d06w4yj4kq18i4b5q2yxg0w9dh-coreutils-8.32/bin:/gnu/store/igqylz2nzjk6x4ax07i6838jdp22yjm6-make-4.3/bin:/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin:/gnu/store/2nygnpi7zns33k9k1dr3y0md5kg8b876-ld-wrapper-0/bin:/gnu/store/ghy9qhlb3ad9xmxxhfmdia643xfnhysa-binutils-2.34/bin:/gnu/store/h1cy6hq72yxnwi4nh0h1fjz8kxgfp8wy-gcc-7.5.0/bin:/gnu/store/sipyfs2540b48b2sb9j8ypmybja1dvqb-glibc-2.31/bin:/gnu/store/sipyfs2540b48b2sb9j8ypmybja1dvqb-glibc-2.31/sbin'
environment variable `R_LIBS_SITE' set to `/gnu/store/mwbf02wzw8by61yjvlylasn2pj8ibsrz-r-knitr-1.33/site-library/:/gnu/store/i7k34ljswdzh0vi564ljxvcvgdmdxnb3-r-futile-logger-1.4.3/site-library/:/gnu/store/9n772f5n49ccm8yl0d5m7wx6jff9axx9-r-snow-0.4-3/site-library/:/gnu/store/ymvj2bsjsb0bl32ry1hb90vnvjd5nkps-r-bh-1.75.0-0/site-library/:/gnu/store/ca8m0hdd6wqhz06ssxdryg502rpvfq49-r-yaml-2.2.1/site-library/:/gnu/store/n81q2nq4gggw3v30nlgy90z243md13az-r-xfun-0.22/site-library/:/gnu/store/9z9mlppm2q9fkkxd1yyvf82yd3ni489a-r-stringr-1.4.0/site-library/:/gnu/store/nir3m09h23ia67n8qjfbq9ynlka9isxj-r-markdown-1.1/site-library/:/gnu/store/23h2jcrfs7r68mf25q9gx46vjkghcskz-r-highr-0.9/site-library/:/gnu/store/bad0jfjdad98q9c2cz2mr977jiah1srp-r-evaluate-0.14/site-library/:/gnu/store/bg1wvphycc635aqsiv2k3vv8rsqsg5zh-r-lambda-r-1.2.4/site-library/:/gnu/store/lg1yz6di6lnka6z9gxqil6xa9fpykwyh-r-futile-options-1.0.1/site-library/:/gnu/store/2nzvjrhxx0wppnyadgil1947qv05drdb-r-stringi-1.5.3/site-library/:/gnu/store/x563sx371r02a82yj8nj7k36d13jcklv-r-magrittr-2.0.1/site-library/:/gnu/store/wv6xq5akzprvwapmlj9ch1kq26m6xy0k-r-glue-1.4.2/site-library/:/gnu/store/hsdig1brwh59lq5fm6ajqfxzclpmcb1l-r-mime-0.10/site-library/:/gnu/store/91drkd3x58sfpii505qi2livmhq0a4ih-r-formatr-1.9/site-library/'
environment variable `BASH_LOADABLES_PATH' unset
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environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/mhbai8872azipnxr9lw3gr8jqxf6348j-bzip2-1.0.8/include:/gnu/store/b2m3hnb7gr526jcs8xj0d7fig73qlhv0-xz-5.2.4/include:/gnu/store/ivj4vx0mc2fz0ipi5knb32r6d992y0b0-file-5.38/include:/gnu/store/3d1n6zsw6zli7agb0ica7x4145haga4z-gawk-5.0.1/include:/gnu/store/igqylz2nzjk6x4ax07i6838jdp22yjm6-make-4.3/include:/gnu/store/ghy9qhlb3ad9xmxxhfmdia643xfnhysa-binutils-2.34/include:/gnu/store/h1cy6hq72yxnwi4nh0h1fjz8kxgfp8wy-gcc-7.5.0/include/c++:/gnu/store/h1cy6hq72yxnwi4nh0h1fjz8kxgfp8wy-gcc-7.5.0/include:/gnu/store/sipyfs2540b48b2sb9j8ypmybja1dvqb-glibc-2.31/include:/gnu/store/sg9ks2n9ikj4952zmf2g851g206zb0r9-linux-libre-headers-5.4.20/include'
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environment variable `GUIX_LOCPATH' set to `/gnu/store/aybfkaw4fasp8hk1hzk3npmi952g11a3-glibc-utf8-locales-2.31/lib/locale'
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starting phase `unpack'
BiocParallel/DESCRIPTION
BiocParallel/NAMESPACE
BiocParallel/NEWS
BiocParallel/R/
BiocParallel/R/AllGenerics.R
BiocParallel/R/BatchJobsParam-class.R
BiocParallel/R/BatchtoolsParam-class.R
BiocParallel/R/BiocParallelParam-class.R
BiocParallel/R/DeveloperInterface.R
BiocParallel/R/DoparParam-class.R
BiocParallel/R/ErrorHandling.R
BiocParallel/R/MulticoreParam-class.R
BiocParallel/R/SerialParam-class.R
BiocParallel/R/SnowParam-class.R
BiocParallel/R/SnowParam-utils.R
BiocParallel/R/TransientMulticoreParam-class.R
BiocParallel/R/bpaggregate-methods.R
BiocParallel/R/bpbackend-methods.R
BiocParallel/R/bpisup-methods.R
BiocParallel/R/bpiterate-methods.R
BiocParallel/R/bplapply-methods.R
BiocParallel/R/bploop.R
BiocParallel/R/bpmapply-methods.R
BiocParallel/R/bpschedule-methods.R
BiocParallel/R/bpstart-methods.R
BiocParallel/R/bpstop-methods.R
BiocParallel/R/bpvalidate.R
BiocParallel/R/bpvec-methods.R
BiocParallel/R/bpvectorize-methods.R
BiocParallel/R/bpworkers-methods.R
BiocParallel/R/internal_rng_stream.R
BiocParallel/R/ipcmutex.R
BiocParallel/R/log.R
BiocParallel/R/progress.R
BiocParallel/R/prototype.R
BiocParallel/R/register.R
BiocParallel/R/utilities.R
BiocParallel/README.md
BiocParallel/build/
BiocParallel/build/BiocParallel.pdf
BiocParallel/build/vignette.rds
BiocParallel/cleanup
BiocParallel/configure
BiocParallel/configure.ac
BiocParallel/inst/
BiocParallel/inst/RMPInode.sh
BiocParallel/inst/RSOCKnode.sh
BiocParallel/inst/doc/
BiocParallel/inst/doc/BiocParallel_BatchtoolsParam.R
BiocParallel/inst/doc/BiocParallel_BatchtoolsParam.Rnw
BiocParallel/inst/doc/BiocParallel_BatchtoolsParam.pdf
BiocParallel/inst/doc/Errors_Logs_And_Debugging.R
BiocParallel/inst/doc/Errors_Logs_And_Debugging.Rnw
BiocParallel/inst/doc/Errors_Logs_And_Debugging.pdf
BiocParallel/inst/doc/Introduction_To_BiocParallel.R
BiocParallel/inst/doc/Introduction_To_BiocParallel.Rnw
BiocParallel/inst/doc/Introduction_To_BiocParallel.pdf
BiocParallel/inst/snow/
BiocParallel/inst/snow/RMPInode.R
BiocParallel/inst/snow/RSOCKnode.R
BiocParallel/inst/unitTests/
BiocParallel/inst/unitTests/test_BatchJobsParam.R
BiocParallel/inst/unitTests/test_BatchtoolsParam.R
BiocParallel/inst/unitTests/test_BiocParallelParam.R
BiocParallel/inst/unitTests/test_SerialParam.R
BiocParallel/inst/unitTests/test_SnowParam.R
BiocParallel/inst/unitTests/test_bpaggregate.R
BiocParallel/inst/unitTests/test_bpexportglobals.R
BiocParallel/inst/unitTests/test_bpiterate.R
BiocParallel/inst/unitTests/test_bplapply.R
BiocParallel/inst/unitTests/test_bploop.R
BiocParallel/inst/unitTests/test_bpmapply.R
BiocParallel/inst/unitTests/test_bpvalidate.R
BiocParallel/inst/unitTests/test_bpvec.R
BiocParallel/inst/unitTests/test_bpvectorize.R
BiocParallel/inst/unitTests/test_errorhandling.R
BiocParallel/inst/unitTests/test_internal_rng_stream.R
BiocParallel/inst/unitTests/test_ipcmutex.R
BiocParallel/inst/unitTests/test_logging.R
BiocParallel/inst/unitTests/test_refclass.R
BiocParallel/inst/unitTests/test_script/
BiocParallel/inst/unitTests/test_script/test-sge-template.tmpl
BiocParallel/inst/unitTests/test_utilities.R
BiocParallel/man/
BiocParallel/man/BatchJobsParam-class.Rd
BiocParallel/man/BatchtoolsParam-class.Rd
BiocParallel/man/BiocParallel-package.Rd
BiocParallel/man/BiocParallelParam-class.Rd
BiocParallel/man/DeveloperInterface.Rd
BiocParallel/man/DoparParam-class.Rd
BiocParallel/man/MulticoreParam-class.Rd
BiocParallel/man/SerialParam-class.Rd
BiocParallel/man/SnowParam-class.Rd
BiocParallel/man/bpaggregate.Rd
BiocParallel/man/bpiterate.Rd
BiocParallel/man/bplapply.Rd
BiocParallel/man/bploop.Rd
BiocParallel/man/bpmapply.Rd
BiocParallel/man/bpok.Rd
BiocParallel/man/bpschedule.Rd
BiocParallel/man/bptry.Rd
BiocParallel/man/bpvalidate.Rd
BiocParallel/man/bpvec.Rd
BiocParallel/man/bpvectorize.Rd
BiocParallel/man/ipcmutex.Rd
BiocParallel/man/register.Rd
BiocParallel/src/
BiocParallel/src/Makevars.in
BiocParallel/src/ipcmutex.cpp
BiocParallel/tests/
BiocParallel/tests/test.R
BiocParallel/vignettes/
BiocParallel/vignettes/BiocParallel_BatchtoolsParam.Rnw
BiocParallel/vignettes/Errors_Logs_And_Debugging.Rnw
BiocParallel/vignettes/Introduction_To_BiocParallel.Rnw
phase `unpack' succeeded after 0.0 seconds
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starting phase `patch-source-shebangs'
patch-shebang: ./configure: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh'
patch-shebang: ./inst/RMPInode.sh: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh'
patch-shebang: ./inst/RSOCKnode.sh: changing `/bin/sh' to `/gnu/store/6ql2s2z4xnsj89zdf4zj6fch2zic0l7k-bash-minimal-5.0.16/bin/sh'
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starting phase `install'
* installing *source* package ‘BiocParallel’ ...
** using staged installation
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for shm_open in -lrt... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -std=gnu++11 -I"/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/include" -DNDEBUG  -I'/gnu/store/ymvj2bsjsb0bl32ry1hb90vnvjd5nkps-r-bh-1.75.0-0/site-library/BH/include' -I/usr/local/include   -fPIC  -g -O2  -c ipcmutex.cpp -o ipcmutex.o
g++ -std=gnu++11 -shared -L/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/lib -L/usr/local/lib -o BiocParallel.so ipcmutex.o -lrt -L/gnu/store/yvc7dl9csnh2p435hj7ldz3a0w96zsqn-r-minimal-4.0.4/lib/R/lib -lR
installing to /gnu/store/jjsnxz594f3zjsdj8rdrxlbb2xgd9ifd-r-biocparallel-1.24.1/site-library/00LOCK-BiocParallel/00new/BiocParallel/libs
** R
** inst
** tests
** byte-compile and prepare package for lazy loading
code for methods in class “BiocParallelParam” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
code for methods in class “SnowParam” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
code for methods in class “.BiocParallelRegistry” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
code for methods in class “.BiocParallelRegistry” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
code for methods in class “BatchJobsParam” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
code for methods in class “BatchtoolsParam” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiocParallel)
phase `install' succeeded after 13.4 seconds
starting phase `check'
Testing examples for package ‘BiocParallel’
phase `check' succeeded after 1.0 seconds
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installing 0 license files from '.'
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