starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/fpxfr4pxli6p3fx646agfln7hqy04l7r-r-minimal-4.1.2/bin:/gnu/store/hqysqhh80g7qy8287b8p2gwz0379vh50-tar-1.34/bin:/gnu/store/8rvnivj15gmirawhikgbjaang5b4w779-gzip-1.10/bin:/gnu/store/64zk0izmaframq6cd0xlsmk0rxn3zc52-bzip2-1.0.8/bin:/gnu/store/z6bw81zw5b5jm3p02y906p0wnjbjqa7n-xz-5.2.5/bin:/gnu/store/jfmrxybjkd0nvh1n34hbzv0lwsnmxz1v-file-5.39/bin:/gnu/store/49j4cjqc8sckyh4qhf9j9dmc6anc8wk9-diffutils-3.8/bin:/gnu/store/znjj5y98lvi46fll85qg22ngz966gx1d-patch-2.7.6/bin:/gnu/store/yq3xalg1p2p5p5hfpw4v5jx0v86qw45w-findutils-4.8.0/bin:/gnu/store/bgyr8c7bl1sqhpapm2kghiya0k6zvi51-gawk-5.1.0/bin:/gnu/store/dsldg7i4y6hxdknh7cv93rbxbp17xm93-sed-4.8/bin:/gnu/store/4znchc8whjbs50mvxgc0skmkvyhy9xk1-grep-3.6/bin:/gnu/store/wllq3y3sl5bldm9vsx2fcwhcmks4i9ar-coreutils-8.32/bin:/gnu/store/zyhbjfyqh10yiw1dw1x1i7n70jm9ygdn-make-4.3/bin:/gnu/store/2an4h5ndc22dv62q3l985ciq862q4bj7-bash-minimal-5.1.8/bin:/gnu/store/g58zxpycy64m790vwjlzpadmbn065fia-ld-wrapper-0/bin:/gnu/store/cr38d3gvf52ckns2b01lwgw86hk3mvcc-binutils-2.37/bin:/gnu/store/h88kd46c8br0wc4i6hq19cjby081ina4-gcc-10.3.0/bin:/gnu/store/mjdjgiz9k5rrbj440r16z6p5g33nr7d7-glibc-2.33/bin:/gnu/store/mjdjgiz9k5rrbj440r16z6p5g33nr7d7-glibc-2.33/sbin'
environment variable `R_LIBS_SITE' unset
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/64zk0izmaframq6cd0xlsmk0rxn3zc52-bzip2-1.0.8/include:/gnu/store/z6bw81zw5b5jm3p02y906p0wnjbjqa7n-xz-5.2.5/include:/gnu/store/jfmrxybjkd0nvh1n34hbzv0lwsnmxz1v-file-5.39/include:/gnu/store/bgyr8c7bl1sqhpapm2kghiya0k6zvi51-gawk-5.1.0/include:/gnu/store/zyhbjfyqh10yiw1dw1x1i7n70jm9ygdn-make-4.3/include:/gnu/store/cr38d3gvf52ckns2b01lwgw86hk3mvcc-binutils-2.37/include:/gnu/store/h88kd46c8br0wc4i6hq19cjby081ina4-gcc-10.3.0/include:/gnu/store/mjdjgiz9k5rrbj440r16z6p5g33nr7d7-glibc-2.33/include:/gnu/store/k8xlwnnmhgmvzyxxfjq3z3fci73zx7x9-linux-libre-headers-5.10.35/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/64zk0izmaframq6cd0xlsmk0rxn3zc52-bzip2-1.0.8/include:/gnu/store/z6bw81zw5b5jm3p02y906p0wnjbjqa7n-xz-5.2.5/include:/gnu/store/jfmrxybjkd0nvh1n34hbzv0lwsnmxz1v-file-5.39/include:/gnu/store/bgyr8c7bl1sqhpapm2kghiya0k6zvi51-gawk-5.1.0/include:/gnu/store/zyhbjfyqh10yiw1dw1x1i7n70jm9ygdn-make-4.3/include:/gnu/store/cr38d3gvf52ckns2b01lwgw86hk3mvcc-binutils-2.37/include:/gnu/store/h88kd46c8br0wc4i6hq19cjby081ina4-gcc-10.3.0/include/c++:/gnu/store/h88kd46c8br0wc4i6hq19cjby081ina4-gcc-10.3.0/include:/gnu/store/mjdjgiz9k5rrbj440r16z6p5g33nr7d7-glibc-2.33/include:/gnu/store/k8xlwnnmhgmvzyxxfjq3z3fci73zx7x9-linux-libre-headers-5.10.35/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/fpxfr4pxli6p3fx646agfln7hqy04l7r-r-minimal-4.1.2/lib:/gnu/store/64zk0izmaframq6cd0xlsmk0rxn3zc52-bzip2-1.0.8/lib:/gnu/store/z6bw81zw5b5jm3p02y906p0wnjbjqa7n-xz-5.2.5/lib:/gnu/store/jfmrxybjkd0nvh1n34hbzv0lwsnmxz1v-file-5.39/lib:/gnu/store/bgyr8c7bl1sqhpapm2kghiya0k6zvi51-gawk-5.1.0/lib:/gnu/store/cr38d3gvf52ckns2b01lwgw86hk3mvcc-binutils-2.37/lib:/gnu/store/mjdjgiz9k5rrbj440r16z6p5g33nr7d7-glibc-2.33/lib:/gnu/store/88bdm10sayqjnggrxlbdmk3rv1qqdrvl-glibc-2.33-static/lib:/gnu/store/y4x3whxg8i1p9w9vy67lz3cw8xfil8bh-glibc-utf8-locales-2.33/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/y4x3whxg8i1p9w9vy67lz3cw8xfil8bh-glibc-utf8-locales-2.33/lib/locale'
phase `set-paths' succeeded after 0.0 seconds
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using 'en_US.utf8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
BiocGenerics/DESCRIPTION
BiocGenerics/NAMESPACE
BiocGenerics/R/
BiocGenerics/R/Extremes.R
BiocGenerics/R/IQR.R
BiocGenerics/R/Ontology.R
BiocGenerics/R/S3-classes-as-S4-classes.R
BiocGenerics/R/annotation.R
BiocGenerics/R/append.R
BiocGenerics/R/as.data.frame.R
BiocGenerics/R/as.list.R
BiocGenerics/R/as.vector.R
BiocGenerics/R/boxplot.R
BiocGenerics/R/cbind.R
BiocGenerics/R/colSums.R
BiocGenerics/R/combine.R
BiocGenerics/R/dbconn.R
BiocGenerics/R/density.R
BiocGenerics/R/dge.R
BiocGenerics/R/dims.R
BiocGenerics/R/do.call.R
BiocGenerics/R/duplicated.R
BiocGenerics/R/eval.R
BiocGenerics/R/fileName.R
BiocGenerics/R/funprog.R
BiocGenerics/R/get.R
BiocGenerics/R/grep.R
BiocGenerics/R/image.R
BiocGenerics/R/is.unsorted.R
BiocGenerics/R/lapply.R
BiocGenerics/R/mad.R
BiocGenerics/R/mapply.R
BiocGenerics/R/match.R
BiocGenerics/R/mean.R
BiocGenerics/R/normalize.R
BiocGenerics/R/normarg-utils.R
BiocGenerics/R/nrow.R
BiocGenerics/R/order.R
BiocGenerics/R/organism_species.R
BiocGenerics/R/paste.R
BiocGenerics/R/path.R
BiocGenerics/R/plotMA.R
BiocGenerics/R/plotPCA.R
BiocGenerics/R/rank.R
BiocGenerics/R/relist.R
BiocGenerics/R/rep.R
BiocGenerics/R/replaceSlots.R
BiocGenerics/R/residuals.R
BiocGenerics/R/row_colnames.R
BiocGenerics/R/score.R
BiocGenerics/R/sets.R
BiocGenerics/R/sort.R
BiocGenerics/R/start.R
BiocGenerics/R/strand.R
BiocGenerics/R/subset.R
BiocGenerics/R/t.R
BiocGenerics/R/table.R
BiocGenerics/R/tapply.R
BiocGenerics/R/testPackage.R
BiocGenerics/R/toTable.R
BiocGenerics/R/type.R
BiocGenerics/R/unique.R
BiocGenerics/R/unlist.R
BiocGenerics/R/unsplit.R
BiocGenerics/R/updateObject.R
BiocGenerics/R/utils.R
BiocGenerics/R/var.R
BiocGenerics/R/weights.R
BiocGenerics/R/which.R
BiocGenerics/R/which.min.R
BiocGenerics/R/xtabs.R
BiocGenerics/R/zzz.R
BiocGenerics/README.md
BiocGenerics/TODO
BiocGenerics/inst/
BiocGenerics/inst/CITATION
BiocGenerics/inst/unitTests/
BiocGenerics/inst/unitTests/test_Extremes.R
BiocGenerics/inst/unitTests/test_combine.R
BiocGenerics/inst/unitTests/test_mapply.R
BiocGenerics/inst/unitTests/test_order.R
BiocGenerics/inst/unitTests/test_paste.R
BiocGenerics/inst/unitTests/test_updateObject.R
BiocGenerics/man/
BiocGenerics/man/BiocGenerics-package.Rd
BiocGenerics/man/Extremes.Rd
BiocGenerics/man/IQR.Rd
BiocGenerics/man/Ontology.Rd
BiocGenerics/man/S3-classes-as-S4-classes.Rd
BiocGenerics/man/annotation.Rd
BiocGenerics/man/append.Rd
BiocGenerics/man/as.data.frame.Rd
BiocGenerics/man/as.list.Rd
BiocGenerics/man/as.vector.Rd
BiocGenerics/man/boxplot.Rd
BiocGenerics/man/cbind.Rd
BiocGenerics/man/colSums.Rd
BiocGenerics/man/combine.Rd
BiocGenerics/man/dbconn.Rd
BiocGenerics/man/density.Rd
BiocGenerics/man/dge.Rd
BiocGenerics/man/dims.Rd
BiocGenerics/man/do.call.Rd
BiocGenerics/man/duplicated.Rd
BiocGenerics/man/eval.Rd
BiocGenerics/man/evalq.Rd
BiocGenerics/man/fileName.Rd
BiocGenerics/man/funprog.Rd
BiocGenerics/man/get.Rd
BiocGenerics/man/grep.Rd
BiocGenerics/man/image.Rd
BiocGenerics/man/is.unsorted.Rd
BiocGenerics/man/lapply.Rd
BiocGenerics/man/mad.Rd
BiocGenerics/man/mapply.Rd
BiocGenerics/man/match.Rd
BiocGenerics/man/mean.Rd
BiocGenerics/man/normalize.Rd
BiocGenerics/man/nrow.Rd
BiocGenerics/man/order.Rd
BiocGenerics/man/organism_species.Rd
BiocGenerics/man/paste.Rd
BiocGenerics/man/path.Rd
BiocGenerics/man/plotMA.Rd
BiocGenerics/man/plotPCA.Rd
BiocGenerics/man/rank.Rd
BiocGenerics/man/relist.Rd
BiocGenerics/man/rep.Rd
BiocGenerics/man/residuals.Rd
BiocGenerics/man/row_colnames.Rd
BiocGenerics/man/score.Rd
BiocGenerics/man/sets.Rd
BiocGenerics/man/sort.Rd
BiocGenerics/man/start.Rd
BiocGenerics/man/strand.Rd
BiocGenerics/man/subset.Rd
BiocGenerics/man/t.Rd
BiocGenerics/man/table.Rd
BiocGenerics/man/tapply.Rd
BiocGenerics/man/testPackage.Rd
BiocGenerics/man/toTable.Rd
BiocGenerics/man/type.Rd
BiocGenerics/man/unique.Rd
BiocGenerics/man/unlist.Rd
BiocGenerics/man/unsplit.Rd
BiocGenerics/man/updateObject.Rd
BiocGenerics/man/var.Rd
BiocGenerics/man/weights.Rd
BiocGenerics/man/which.Rd
BiocGenerics/man/which.min.Rd
BiocGenerics/man/xtabs.Rd
BiocGenerics/tests/
BiocGenerics/tests/run_unitTests.R
phase `unpack' succeeded after 0.0 seconds
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phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `install'
* installing *source* package ‘BiocGenerics’ ...
** using staged installation
** R
** inst
** tests
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘append’ in package ‘BiocGenerics’
Creating a new generic function for ‘as.data.frame’ in package ‘BiocGenerics’
Creating a new generic function for ‘cbind’ in package ‘BiocGenerics’
Creating a new generic function for ‘rbind’ in package ‘BiocGenerics’
Creating a new generic function for ‘do.call’ in package ‘BiocGenerics’
Creating a new generic function for ‘duplicated’ in package ‘BiocGenerics’
Creating a new generic function for ‘anyDuplicated’ in package ‘BiocGenerics’
Creating a new generic function for ‘eval’ in package ‘BiocGenerics’
Creating a new generic function for ‘pmax’ in package ‘BiocGenerics’
Creating a new generic function for ‘pmin’ in package ‘BiocGenerics’
Creating a new generic function for ‘pmax.int’ in package ‘BiocGenerics’
Creating a new generic function for ‘pmin.int’ in package ‘BiocGenerics’
Creating a new generic function for ‘Reduce’ in package ‘BiocGenerics’
Creating a new generic function for ‘Filter’ in package ‘BiocGenerics’
Creating a new generic function for ‘Find’ in package ‘BiocGenerics’
Creating a new generic function for ‘Map’ in package ‘BiocGenerics’
Creating a new generic function for ‘Position’ in package ‘BiocGenerics’
Creating a new generic function for ‘get’ in package ‘BiocGenerics’
Creating a new generic function for ‘mget’ in package ‘BiocGenerics’
Creating a new generic function for ‘grep’ in package ‘BiocGenerics’
Creating a new generic function for ‘grepl’ in package ‘BiocGenerics’
Creating a new generic function for ‘is.unsorted’ in package ‘BiocGenerics’
Creating a new generic function for ‘lapply’ in package ‘BiocGenerics’
Creating a new generic function for ‘sapply’ in package ‘BiocGenerics’
Creating a new generic function for ‘mapply’ in package ‘BiocGenerics’
Creating a new generic function for ‘match’ in package ‘BiocGenerics’
Creating a new generic function for ‘order’ in package ‘BiocGenerics’
Creating a new generic function for ‘paste’ in package ‘BiocGenerics’
Creating a new generic function for ‘rank’ in package ‘BiocGenerics’
Creating a new generic function for ‘rownames’ in package ‘BiocGenerics’
Creating a new generic function for ‘colnames’ in package ‘BiocGenerics’
Creating a new generic function for ‘union’ in package ‘BiocGenerics’
Creating a new generic function for ‘intersect’ in package ‘BiocGenerics’
Creating a new generic function for ‘setdiff’ in package ‘BiocGenerics’
Creating a new generic function for ‘sort’ in package ‘BiocGenerics’
Creating a new generic function for ‘table’ in package ‘BiocGenerics’
Creating a new generic function for ‘tapply’ in package ‘BiocGenerics’
Creating a new generic function for ‘unique’ in package ‘BiocGenerics’
Creating a new generic function for ‘unsplit’ in package ‘BiocGenerics’
Creating a new generic function for ‘var’ in package ‘BiocGenerics’
Creating a new generic function for ‘sd’ in package ‘BiocGenerics’
Creating a new generic function for ‘which.min’ in package ‘BiocGenerics’
Creating a new generic function for ‘which.max’ in package ‘BiocGenerics’
Creating a new generic function for ‘IQR’ in package ‘BiocGenerics’
Creating a new generic function for ‘mad’ in package ‘BiocGenerics’
Creating a new generic function for ‘xtabs’ in package ‘BiocGenerics’
Creating a new generic function for ‘basename’ in package ‘BiocGenerics’
Creating a new generic function for ‘dirname’ in package ‘BiocGenerics’
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiocGenerics)
phase `install' succeeded after 6.7 seconds
starting phase `check'
Testing examples for package ‘BiocGenerics’
phase `check' succeeded after 1.6 seconds
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starting phase `strip'
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starting phase `validate-runpath'
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starting phase `validate-documentation-location'
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starting phase `delete-info-dir-file'
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starting phase `install-license-files'
installing 0 license files from '.'
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