starting phase `set-SOURCE-DATE-EPOCH' phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds starting phase `set-paths' environment variable `PATH' set to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin:/gnu/store/l5rlwf6djp5mb2rm99l044ywxf1sysya-python-nose-1.3.7/bin:/gnu/store/naxai44gyq8jnnrm36b0kapjwq60lsba-python-cython-0.29.22/bin:/gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/bin:/gnu/store/gww59gv5qxbfijg3vk5y182im7923s06-tar-1.32/bin:/gnu/store/2ayciqwxddkzq183dac82ijljc14j4zj-gzip-1.10/bin:/gnu/store/n1jk0w2wa4vpwmixaqn2y3la1l2sizzi-bzip2-1.0.8/bin:/gnu/store/7p36raqgk6vn47bflxc9bsclqiib3phi-xz-5.2.4/bin:/gnu/store/lpkf3ydcdvxn8gcrzaq9cp3ri05h8qhs-file-5.38/bin:/gnu/store/6gqaw09zqw8w0vcax6simlq71bq7l5r0-diffutils-3.7/bin:/gnu/store/qw20chpgkgbcqmzhs60c8hjl1hmblyc8-patch-2.7.6/bin:/gnu/store/b5y5scfmh2d8kxcpl9p84294z2198cgf-findutils-4.7.0/bin:/gnu/store/9iwlsj7d6ffqhshy8qshf7p4fqwfwrvn-gawk-5.0.1/bin:/gnu/store/q1nfjb24vqjs1cgi8mlnskw34h16y09r-sed-4.8/bin:/gnu/store/4qr6mcvsxyzknxa7x1wny8x30f5i0r3n-grep-3.4/bin:/gnu/store/2v61vg0bizgrhybkqbrki2k7kr094waz-coreutils-8.32/bin:/gnu/store/b7jbh7kzzig0bxfswdj8nfj9bkljyyya-make-4.3/bin:/gnu/store/v1g7f3p4f0851mywrla8qmr9hb8jgfjr-bash-minimal-5.0.16/bin:/gnu/store/dyqxnydqk1810afjfbqzfvh0n83xyl62-ld-wrapper-0/bin:/gnu/store/50lyzn9bz6x4da66648kry29wn8afird-binutils-2.34/bin:/gnu/store/afpgzln8860m6yfhxy6i8n9rywbp85cy-gcc-7.5.0/bin:/gnu/store/z4li262il798hbl0l1h1k3a5g7r6bffa-glibc-2.31/bin:/gnu/store/z4li262il798hbl0l1h1k3a5g7r6bffa-glibc-2.31/sbin:/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/bin' environment variable `PYTHONPATH' set to `/gnu/store/89nj63avh8m8wms9cl49801slbayd5gi-python-lzo-1.12/lib/python3.8/site-packages:/gnu/store/l5rlwf6djp5mb2rm99l044ywxf1sysya-python-nose-1.3.7/lib/python3.8/site-packages:/gnu/store/naxai44gyq8jnnrm36b0kapjwq60lsba-python-cython-0.29.22/lib/python3.8/site-packages:/gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages:/gnu/store/idb96qvm8yncfcg4ilk03i2c42aw6qk6-python-six-1.14.0/lib/python3.8/site-packages:/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib/python3.8/site-packages' environment variable `BASH_LOADABLES_PATH' unset environment variable `C_INCLUDE_PATH' set to `/gnu/store/pqyqxd5mbvlb22ifxzp4q2skjfq1p8yj-zlib-1.2.11/include:/gnu/store/n1jk0w2wa4vpwmixaqn2y3la1l2sizzi-bzip2-1.0.8/include:/gnu/store/7p36raqgk6vn47bflxc9bsclqiib3phi-xz-5.2.4/include:/gnu/store/lpkf3ydcdvxn8gcrzaq9cp3ri05h8qhs-file-5.38/include:/gnu/store/9iwlsj7d6ffqhshy8qshf7p4fqwfwrvn-gawk-5.0.1/include:/gnu/store/b7jbh7kzzig0bxfswdj8nfj9bkljyyya-make-4.3/include:/gnu/store/50lyzn9bz6x4da66648kry29wn8afird-binutils-2.34/include:/gnu/store/afpgzln8860m6yfhxy6i8n9rywbp85cy-gcc-7.5.0/include:/gnu/store/z4li262il798hbl0l1h1k3a5g7r6bffa-glibc-2.31/include:/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include:/gnu/store/hk7l42fwxmnrnlhyiixvaqf1i1crcckp-linux-libre-headers-5.4.20/include' environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/pqyqxd5mbvlb22ifxzp4q2skjfq1p8yj-zlib-1.2.11/include:/gnu/store/n1jk0w2wa4vpwmixaqn2y3la1l2sizzi-bzip2-1.0.8/include:/gnu/store/7p36raqgk6vn47bflxc9bsclqiib3phi-xz-5.2.4/include:/gnu/store/lpkf3ydcdvxn8gcrzaq9cp3ri05h8qhs-file-5.38/include:/gnu/store/9iwlsj7d6ffqhshy8qshf7p4fqwfwrvn-gawk-5.0.1/include:/gnu/store/b7jbh7kzzig0bxfswdj8nfj9bkljyyya-make-4.3/include:/gnu/store/50lyzn9bz6x4da66648kry29wn8afird-binutils-2.34/include:/gnu/store/afpgzln8860m6yfhxy6i8n9rywbp85cy-gcc-7.5.0/include/c++:/gnu/store/afpgzln8860m6yfhxy6i8n9rywbp85cy-gcc-7.5.0/include:/gnu/store/z4li262il798hbl0l1h1k3a5g7r6bffa-glibc-2.31/include:/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include:/gnu/store/hk7l42fwxmnrnlhyiixvaqf1i1crcckp-linux-libre-headers-5.4.20/include' environment variable `LIBRARY_PATH' set to `/gnu/store/89nj63avh8m8wms9cl49801slbayd5gi-python-lzo-1.12/lib:/gnu/store/l5rlwf6djp5mb2rm99l044ywxf1sysya-python-nose-1.3.7/lib:/gnu/store/naxai44gyq8jnnrm36b0kapjwq60lsba-python-cython-0.29.22/lib:/gnu/store/pqyqxd5mbvlb22ifxzp4q2skjfq1p8yj-zlib-1.2.11/lib:/gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib:/gnu/store/idb96qvm8yncfcg4ilk03i2c42aw6qk6-python-six-1.14.0/lib:/gnu/store/n1jk0w2wa4vpwmixaqn2y3la1l2sizzi-bzip2-1.0.8/lib:/gnu/store/7p36raqgk6vn47bflxc9bsclqiib3phi-xz-5.2.4/lib:/gnu/store/lpkf3ydcdvxn8gcrzaq9cp3ri05h8qhs-file-5.38/lib:/gnu/store/9iwlsj7d6ffqhshy8qshf7p4fqwfwrvn-gawk-5.0.1/lib:/gnu/store/50lyzn9bz6x4da66648kry29wn8afird-binutils-2.34/lib:/gnu/store/z4li262il798hbl0l1h1k3a5g7r6bffa-glibc-2.31/lib:/gnu/store/rzk3v28mhi4m7sh0qippp9a5rzy03rkg-glibc-2.31-static/lib:/gnu/store/x6i3vfg4gaqd42cqb6mzk52v4lds1467-glibc-utf8-locales-2.31/lib:/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib' environment variable `GUIX_LOCPATH' set to `/gnu/store/x6i3vfg4gaqd42cqb6mzk52v4lds1467-glibc-utf8-locales-2.31/lib/locale' phase `set-paths' succeeded after 0.0 seconds starting phase `install-locale' using 'en_US.utf8' locale for category "LC_ALL" phase `install-locale' succeeded after 0.0 seconds starting phase `unpack' bx-python-0.8.2/ bx-python-0.8.2/PKG-INFO bx-python-0.8.2/LICENSE bx-python-0.8.2/MANIFEST.in bx-python-0.8.2/README.md bx-python-0.8.2/setup.py bx-python-0.8.2/scripts/ bx-python-0.8.2/scripts/maf_mapping_word_frequency.py bx-python-0.8.2/scripts/maf_tile_2.py bx-python-0.8.2/scripts/maf_mean_length_ungapped_piece.py bx-python-0.8.2/scripts/bed_build_windows.py bx-python-0.8.2/scripts/maf_col_counts.py bx-python-0.8.2/scripts/maf_shuffle_columns.py bx-python-0.8.2/scripts/out_to_chain.py bx-python-0.8.2/scripts/pretty_table.py bx-python-0.8.2/scripts/random_lines.py bx-python-0.8.2/scripts/prefix_lines.py bx-python-0.8.2/scripts/nib_intervals_to_fasta.py bx-python-0.8.2/scripts/nib_chrom_intervals_to_fasta.py bx-python-0.8.2/scripts/mask_quality.py bx-python-0.8.2/scripts/bed_count_by_interval.py bx-python-0.8.2/scripts/bnMapper.py bx-python-0.8.2/scripts/line_select.py bx-python-0.8.2/scripts/maf_build_index.py bx-python-0.8.2/scripts/wiggle_to_binned_array.py bx-python-0.8.2/scripts/maf_extract_ranges.py bx-python-0.8.2/scripts/maf_limit_to_species.py bx-python-0.8.2/scripts/maf_filter_max_wc.py bx-python-0.8.2/scripts/wiggle_to_chr_binned_array.py bx-python-0.8.2/scripts/maf_percent_columns_matching.py bx-python-0.8.2/scripts/lav_to_maf.py bx-python-0.8.2/scripts/bed_diff_basewise_summary.py bx-python-0.8.2/scripts/bed_coverage.py bx-python-0.8.2/scripts/maf_gc_content.py bx-python-0.8.2/scripts/qv_to_bqv.py bx-python-0.8.2/scripts/gene_fourfold_sites.py bx-python-0.8.2/scripts/maf_drop_overlapping.py bx-python-0.8.2/scripts/maf_interval_alignibility.py bx-python-0.8.2/scripts/table_add_column.py bx-python-0.8.2/scripts/maf_covered_regions.py bx-python-0.8.2/scripts/mMK_bitset.py bx-python-0.8.2/scripts/maf_count.py bx-python-0.8.2/scripts/axt_to_maf.py bx-python-0.8.2/scripts/bed_coverage_by_interval.py bx-python-0.8.2/scripts/maf_word_frequency.py bx-python-0.8.2/scripts/bed_merge_overlapping.py bx-python-0.8.2/scripts/wiggle_to_array_tree.py bx-python-0.8.2/scripts/maf_div_sites.py bx-python-0.8.2/scripts/bed_subtract_basewise.py bx-python-0.8.2/scripts/tfloc_summary.py bx-python-0.8.2/scripts/maf_extract_ranges_indexed.py bx-python-0.8.2/scripts/maf_percent_identity.py bx-python-0.8.2/scripts/bed_extend_to.py bx-python-0.8.2/scripts/maf_col_counts_all.py bx-python-0.8.2/scripts/interval_count_intersections.py bx-python-0.8.2/scripts/bed_intersect.py bx-python-0.8.2/scripts/find_in_sorted_file.py bx-python-0.8.2/scripts/bed_intersect_basewise.py bx-python-0.8.2/scripts/aggregate_scores_in_intervals.py bx-python-0.8.2/scripts/lav_to_axt.py bx-python-0.8.2/scripts/maf_translate_chars.py bx-python-0.8.2/scripts/maf_tile_2bit.py bx-python-0.8.2/scripts/div_snp_table_chr.py bx-python-0.8.2/scripts/axt_extract_ranges.py bx-python-0.8.2/scripts/maf_to_int_seqs.py bx-python-0.8.2/scripts/bed_complement.py bx-python-0.8.2/scripts/axt_to_fasta.py bx-python-0.8.2/scripts/maf_thread_for_species.py bx-python-0.8.2/scripts/maf_covered_ranges.py bx-python-0.8.2/scripts/ucsc_gene_table_to_intervals.py bx-python-0.8.2/scripts/maf_to_fasta.py bx-python-0.8.2/scripts/maf_print_chroms.py bx-python-0.8.2/scripts/maf_select.py bx-python-0.8.2/scripts/maf_truncate.py bx-python-0.8.2/scripts/maf_split_by_src.py bx-python-0.8.2/scripts/maf_mask_cpg.py bx-python-0.8.2/scripts/maf_species_in_all_files.py bx-python-0.8.2/scripts/wiggle_to_simple.py bx-python-0.8.2/scripts/align_print_template.py bx-python-0.8.2/scripts/maf_tile.py bx-python-0.8.2/scripts/maf_gap_frequency.py bx-python-0.8.2/scripts/one_field_per_line.py bx-python-0.8.2/scripts/maf_randomize.py bx-python-0.8.2/scripts/maf_chop.py bx-python-0.8.2/scripts/maf_chunk.py bx-python-0.8.2/scripts/table_filter.py bx-python-0.8.2/scripts/maf_filter.py bx-python-0.8.2/scripts/get_scores_in_intervals.py bx-python-0.8.2/scripts/bed_bigwig_profile.py bx-python-0.8.2/scripts/maf_to_axt.py bx-python-0.8.2/scripts/nib_length.py bx-python-0.8.2/scripts/int_seqs_to_char_strings.py bx-python-0.8.2/scripts/lzop_build_offset_table.py bx-python-0.8.2/scripts/bed_rand_intersect.py bx-python-0.8.2/scripts/maf_region_coverage_by_src.py bx-python-0.8.2/scripts/interval_join.py bx-python-0.8.2/scripts/maf_print_scores.py bx-python-0.8.2/scripts/bed_count_overlapping.py bx-python-0.8.2/scripts/maf_to_concat_fasta.py bx-python-0.8.2/scripts/axt_to_lav.py bx-python-0.8.2/scripts/maf_extract_chrom_ranges.py bx-python-0.8.2/lib/ bx-python-0.8.2/lib/bx/ bx-python-0.8.2/lib/bx/gene_reader.py bx-python-0.8.2/lib/bx/misc/ bx-python-0.8.2/lib/bx/misc/seekbzip2_tests.py bx-python-0.8.2/lib/bx/misc/bgzf.pyx bx-python-0.8.2/lib/bx/misc/seekbzip2.py bx-python-0.8.2/lib/bx/misc/cdb.py bx-python-0.8.2/lib/bx/misc/__init__.py bx-python-0.8.2/lib/bx/misc/seeklzop_tests.py bx-python-0.8.2/lib/bx/misc/readlengths.py bx-python-0.8.2/lib/bx/misc/_seekbzip2.pyx bx-python-0.8.2/lib/bx/misc/binary_file.py bx-python-0.8.2/lib/bx/misc/filecache.py bx-python-0.8.2/lib/bx/misc/bgzf.c bx-python-0.8.2/lib/bx/misc/_seekbzip2.c bx-python-0.8.2/lib/bx/misc/cdb_tests.py bx-python-0.8.2/lib/bx/misc/seeklzop.py bx-python-0.8.2/lib/bx/misc/filecache_tests.py bx-python-0.8.2/lib/bx/misc/bgzf_tests.py bx-python-0.8.2/lib/bx/wiggle.py bx-python-0.8.2/lib/bx/bitset.pyx bx-python-0.8.2/lib/bx/motif/ bx-python-0.8.2/lib/bx/motif/pwm.py bx-python-0.8.2/lib/bx/motif/pwm_tests.py bx-python-0.8.2/lib/bx/motif/io/ bx-python-0.8.2/lib/bx/motif/io/transfac.py bx-python-0.8.2/lib/bx/motif/io/transfac_tests.py bx-python-0.8.2/lib/bx/motif/io/__init__.py bx-python-0.8.2/lib/bx/motif/__init__.py bx-python-0.8.2/lib/bx/motif/logo/ bx-python-0.8.2/lib/bx/motif/logo/template.ps bx-python-0.8.2/lib/bx/motif/logo/__init__.py bx-python-0.8.2/lib/bx/motif/_pwm.pyx bx-python-0.8.2/lib/bx/motif/_pwm.c bx-python-0.8.2/lib/bx/pwm/ bx-python-0.8.2/lib/bx/pwm/bed_score_aligned_string.py bx-python-0.8.2/lib/bx/pwm/pwm_score_motifs.py bx-python-0.8.2/lib/bx/pwm/maf_select_motifs.py bx-python-0.8.2/lib/bx/pwm/_position_weight_matrix.pyx bx-python-0.8.2/lib/bx/pwm/pwm_tests.py bx-python-0.8.2/lib/bx/pwm/pwm_score_maf.py bx-python-0.8.2/lib/bx/pwm/bed_score_aligned_pwm.py bx-python-0.8.2/lib/bx/pwm/__init__.py bx-python-0.8.2/lib/bx/pwm/pwm_score_positions.py bx-python-0.8.2/lib/bx/pwm/position_weight_matrix.py bx-python-0.8.2/lib/bx/pwm/_position_weight_matrix.c bx-python-0.8.2/lib/bx/interval_index_file.py bx-python-0.8.2/lib/bx/_seqmapping.pyx bx-python-0.8.2/lib/bx/seq/ bx-python-0.8.2/lib/bx/seq/twobit_tests.py bx-python-0.8.2/lib/bx/seq/qdna_tests.py bx-python-0.8.2/lib/bx/seq/seq_tests.py bx-python-0.8.2/lib/bx/seq/qdna.py bx-python-0.8.2/lib/bx/seq/_nib.pyx bx-python-0.8.2/lib/bx/seq/_nib.c bx-python-0.8.2/lib/bx/seq/__init__.py bx-python-0.8.2/lib/bx/seq/core.py bx-python-0.8.2/lib/bx/seq/_twobit.pyx bx-python-0.8.2/lib/bx/seq/fasta_tests.py bx-python-0.8.2/lib/bx/seq/nib_tests.py bx-python-0.8.2/lib/bx/seq/_twobit.c bx-python-0.8.2/lib/bx/seq/fasta.py bx-python-0.8.2/lib/bx/seq/nib.py bx-python-0.8.2/lib/bx/seq/twobit.py bx-python-0.8.2/lib/bx/seq/seq.py bx-python-0.8.2/lib/bx/tabular/ bx-python-0.8.2/lib/bx/tabular/io.py bx-python-0.8.2/lib/bx/tabular/__init__.py bx-python-0.8.2/lib/bx/_seqmapping.c bx-python-0.8.2/lib/bx/__init__.py bx-python-0.8.2/lib/bx/cookbook/ bx-python-0.8.2/lib/bx/cookbook/doc_optparse.py bx-python-0.8.2/lib/bx/cookbook/attribute.py bx-python-0.8.2/lib/bx/cookbook/__init__.py bx-python-0.8.2/lib/bx/cookbook/argparse.py bx-python-0.8.2/lib/bx/cookbook/progress_bar.py bx-python-0.8.2/lib/bx/intervals/ bx-python-0.8.2/lib/bx/intervals/random_intervals.py bx-python-0.8.2/lib/bx/intervals/cluster.pyx bx-python-0.8.2/lib/bx/intervals/io.py bx-python-0.8.2/lib/bx/intervals/__init__.py bx-python-0.8.2/lib/bx/intervals/operations/ bx-python-0.8.2/lib/bx/intervals/operations/merge.py bx-python-0.8.2/lib/bx/intervals/operations/subtract.py bx-python-0.8.2/lib/bx/intervals/operations/quicksect.py bx-python-0.8.2/lib/bx/intervals/operations/concat.py bx-python-0.8.2/lib/bx/intervals/operations/base_coverage.py bx-python-0.8.2/lib/bx/intervals/operations/__init__.py bx-python-0.8.2/lib/bx/intervals/operations/coverage.py bx-python-0.8.2/lib/bx/intervals/operations/join.py bx-python-0.8.2/lib/bx/intervals/operations/intersect.py bx-python-0.8.2/lib/bx/intervals/operations/find_clusters.py bx-python-0.8.2/lib/bx/intervals/operations/complement.py bx-python-0.8.2/lib/bx/intervals/cluster.c bx-python-0.8.2/lib/bx/intervals/intersection.c bx-python-0.8.2/lib/bx/intervals/cluster_tests.py bx-python-0.8.2/lib/bx/intervals/intersection.pyx bx-python-0.8.2/lib/bx/intervals/intersection_tests.py bx-python-0.8.2/lib/bx/bitset_tests.py bx-python-0.8.2/lib/bx/bitset.c bx-python-0.8.2/lib/bx/align/ bx-python-0.8.2/lib/bx/align/_epo.pyx bx-python-0.8.2/lib/bx/align/tools/ bx-python-0.8.2/lib/bx/align/tools/tile.py bx-python-0.8.2/lib/bx/align/tools/thread.py bx-python-0.8.2/lib/bx/align/tools/__init__.py bx-python-0.8.2/lib/bx/align/tools/chop.py bx-python-0.8.2/lib/bx/align/tools/fuse.py bx-python-0.8.2/lib/bx/align/lav_tests.py bx-python-0.8.2/lib/bx/align/sitemask/ bx-python-0.8.2/lib/bx/align/sitemask/cpg.py bx-python-0.8.2/lib/bx/align/sitemask/__init__.py bx-python-0.8.2/lib/bx/align/sitemask/core.py bx-python-0.8.2/lib/bx/align/sitemask/find_cpg.h bx-python-0.8.2/lib/bx/align/sitemask/_cpg.c bx-python-0.8.2/lib/bx/align/sitemask/sitemask_tests.py bx-python-0.8.2/lib/bx/align/sitemask/quality.py bx-python-0.8.2/lib/bx/align/sitemask/find_cpg.c bx-python-0.8.2/lib/bx/align/sitemask/_cpg.pyx bx-python-0.8.2/lib/bx/align/_core.c bx-python-0.8.2/lib/bx/align/epo_tests.py bx-python-0.8.2/lib/bx/align/__init__.py bx-python-0.8.2/lib/bx/align/axt.py bx-python-0.8.2/lib/bx/align/core.py bx-python-0.8.2/lib/bx/align/maf_tests.py bx-python-0.8.2/lib/bx/align/lav.py bx-python-0.8.2/lib/bx/align/score_tests.py bx-python-0.8.2/lib/bx/align/_core.pyx bx-python-0.8.2/lib/bx/align/epo.py bx-python-0.8.2/lib/bx/align/_epo.c bx-python-0.8.2/lib/bx/align/maf.py bx-python-0.8.2/lib/bx/align/score.py bx-python-0.8.2/lib/bx/bitset_builders.py bx-python-0.8.2/lib/bx/wiggle_tests.py bx-python-0.8.2/lib/bx/arrays/ bx-python-0.8.2/lib/bx/arrays/array_tree_tests.py bx-python-0.8.2/lib/bx/arrays/array_tree.pyx bx-python-0.8.2/lib/bx/arrays/bed.pyx bx-python-0.8.2/lib/bx/arrays/array_tree.c bx-python-0.8.2/lib/bx/arrays/__init__.py bx-python-0.8.2/lib/bx/arrays/wiggle.c bx-python-0.8.2/lib/bx/arrays/wiggle.pyx bx-python-0.8.2/lib/bx/arrays/bed.c bx-python-0.8.2/lib/bx/interval_index_file_tests.py bx-python-0.8.2/lib/bx/binned_array.py bx-python-0.8.2/lib/bx/seqmapping_tests.py bx-python-0.8.2/lib/bx/filter.py bx-python-0.8.2/lib/bx/bitset_utils.py bx-python-0.8.2/lib/bx/bbi/ bx-python-0.8.2/lib/bx/bbi/bigwig_tests.py bx-python-0.8.2/lib/bx/bbi/cirtree_file.pyx bx-python-0.8.2/lib/bx/bbi/bbi_file.c bx-python-0.8.2/lib/bx/bbi/cirtree_file.c bx-python-0.8.2/lib/bx/bbi/bpt_file.c bx-python-0.8.2/lib/bx/bbi/__init__.py bx-python-0.8.2/lib/bx/bbi/bpt_file.pyx bx-python-0.8.2/lib/bx/bbi/bigwig_file.pyx bx-python-0.8.2/lib/bx/bbi/bbi_file.pyx bx-python-0.8.2/lib/bx/bbi/bigbed_file.c bx-python-0.8.2/lib/bx/bbi/bigbed_file.pyx bx-python-0.8.2/lib/bx/bbi/bbi_file.h bx-python-0.8.2/lib/bx/bbi/bigwig_file.c bx-python-0.8.2/lib/bx/intseq/ bx-python-0.8.2/lib/bx/intseq/__init__.py bx-python-0.8.2/lib/bx/intseq/ngramcount.pyx bx-python-0.8.2/lib/bx/intseq/ngramcount.c bx-python-0.8.2/lib/bx/binned_array_tests.py bx-python-0.8.2/lib/bx/seqmapping.py bx-python-0.8.2/lib/bx/phylo/ bx-python-0.8.2/lib/bx/phylo/newick.py bx-python-0.8.2/lib/bx/phylo/__init__.py bx-python-0.8.2/lib/bx/phylo/newick_tests.py bx-python-0.8.2/lib/bx/phylo/phast.py bx-python-0.8.2/lib/bx/phylo/phast_tests.py bx-python-0.8.2/lib/bx_python.egg-info/ bx-python-0.8.2/lib/bx_python.egg-info/PKG-INFO bx-python-0.8.2/lib/bx_python.egg-info/not-zip-safe bx-python-0.8.2/lib/bx_python.egg-info/SOURCES.txt bx-python-0.8.2/lib/bx_python.egg-info/requires.txt bx-python-0.8.2/lib/bx_python.egg-info/top_level.txt bx-python-0.8.2/lib/bx_python.egg-info/dependency_links.txt bx-python-0.8.2/lib/psyco_full.py bx-python-0.8.2/lib/bx_extras/ bx-python-0.8.2/lib/bx_extras/fpconst_tests.py bx-python-0.8.2/lib/bx_extras/fpconst.py bx-python-0.8.2/lib/bx_extras/__init__.py bx-python-0.8.2/lib/bx_extras/pstat.py bx-python-0.8.2/lib/bx_extras/lrucache.py bx-python-0.8.2/lib/bx_extras/stats.py bx-python-0.8.2/lib/bx_extras/pyparsing.py bx-python-0.8.2/setup.cfg bx-python-0.8.2/src/ bx-python-0.8.2/src/cluster.h bx-python-0.8.2/src/pwm_utils.c bx-python-0.8.2/src/bunzip/ bx-python-0.8.2/src/bunzip/micro-bunzip.c bx-python-0.8.2/src/bunzip/micro-bunzip.h bx-python-0.8.2/src/binBits.c bx-python-0.8.2/src/npy_capsule_as_void_ptr.h bx-python-0.8.2/src/kent/ bx-python-0.8.2/src/kent/common.c bx-python-0.8.2/src/kent/bits.c bx-python-0.8.2/src/kent/common.h bx-python-0.8.2/src/kent/bits.h bx-python-0.8.2/src/cluster.c bx-python-0.8.2/src/pwm_utils.h bx-python-0.8.2/src/samtools/ bx-python-0.8.2/src/samtools/bgzf.h bx-python-0.8.2/src/samtools/khash.h bx-python-0.8.2/src/samtools/bgzf.c bx-python-0.8.2/src/binBits.h phase `unpack' succeeded after 0.1 seconds starting phase `ensure-no-mtimes-pre-1980' phase `ensure-no-mtimes-pre-1980' succeeded after 0.0 seconds starting phase `enable-bytecode-determinism' phase `enable-bytecode-determinism' succeeded after 0.0 seconds starting phase `patch-usr-bin-file' phase `patch-usr-bin-file' succeeded after 0.0 seconds starting phase `patch-source-shebangs' patch-shebang: ./lib/bx/intervals/operations/subtract.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./lib/bx/pwm/bed_score_aligned_pwm.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./lib/bx/pwm/bed_score_aligned_string.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./lib/bx/pwm/maf_select_motifs.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./lib/bx/pwm/position_weight_matrix.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./lib/bx/pwm/pwm_score_maf.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./lib/bx/pwm/pwm_score_motifs.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./lib/bx/pwm/pwm_score_positions.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./scripts/aggregate_scores_in_intervals.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/align_print_template.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/axt_extract_ranges.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/axt_to_fasta.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/axt_to_lav.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/axt_to_maf.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/bed_bigwig_profile.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/bed_build_windows.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./scripts/bed_complement.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./scripts/bed_count_by_interval.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./scripts/bed_count_overlapping.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./scripts/bed_coverage.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/bed_coverage_by_interval.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/bed_diff_basewise_summary.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/bed_extend_to.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/bed_intersect.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/bed_intersect_basewise.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/bed_merge_overlapping.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/bed_rand_intersect.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./scripts/bed_subtract_basewise.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/bnMapper.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/div_snp_table_chr.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./scripts/find_in_sorted_file.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/gene_fourfold_sites.py: changing `/usr/bin/python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/get_scores_in_intervals.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/int_seqs_to_char_strings.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/interval_count_intersections.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/interval_join.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./scripts/lav_to_axt.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/lav_to_maf.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/line_select.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/lzop_build_offset_table.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./scripts/mMK_bitset.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./scripts/maf_build_index.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_chop.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_chunk.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_col_counts.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_col_counts_all.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_count.py: warning: no binary for interpreter `python2.3' found in $PATH patch-shebang: ./scripts/maf_covered_ranges.py: warning: no binary for interpreter `python2.3' found in $PATH patch-shebang: ./scripts/maf_covered_regions.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_div_sites.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./scripts/maf_drop_overlapping.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_extract_chrom_ranges.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_extract_ranges.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_extract_ranges_indexed.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_filter.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_filter_max_wc.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_gap_frequency.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_gc_content.py: warning: no binary for interpreter `python2.3' found in $PATH patch-shebang: ./scripts/maf_interval_alignibility.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./scripts/maf_limit_to_species.py: warning: no binary for interpreter `python2.3' found in $PATH patch-shebang: ./scripts/maf_mapping_word_frequency.py: warning: no binary for interpreter `python2.3' found in $PATH patch-shebang: ./scripts/maf_mask_cpg.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_mean_length_ungapped_piece.py: warning: no binary for interpreter `python2.3' found in $PATH patch-shebang: ./scripts/maf_percent_columns_matching.py: warning: no binary for interpreter `python2.3' found in $PATH patch-shebang: ./scripts/maf_percent_identity.py: warning: no binary for interpreter `python2.3' found in $PATH patch-shebang: ./scripts/maf_print_chroms.py: warning: no binary for interpreter `python2.3' found in $PATH patch-shebang: ./scripts/maf_print_scores.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_randomize.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_region_coverage_by_src.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_select.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_shuffle_columns.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_species_in_all_files.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./scripts/maf_split_by_src.py: warning: no binary for interpreter `python2.3' found in $PATH patch-shebang: ./scripts/maf_thread_for_species.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_tile.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_tile_2.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_tile_2bit.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_to_axt.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_to_concat_fasta.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_to_fasta.py: warning: no binary for interpreter `python.' found in $PATH patch-shebang: ./scripts/maf_to_int_seqs.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_translate_chars.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_truncate.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/maf_word_frequency.py: warning: no binary for interpreter `python2.3' found in $PATH patch-shebang: ./scripts/mask_quality.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/nib_chrom_intervals_to_fasta.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/nib_intervals_to_fasta.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/nib_length.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/one_field_per_line.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/out_to_chain.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/prefix_lines.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/pretty_table.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/qv_to_bqv.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/random_lines.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/table_add_column.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/table_filter.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/tfloc_summary.py: warning: no binary for interpreter `python2.3' found in $PATH patch-shebang: ./scripts/ucsc_gene_table_to_intervals.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/wiggle_to_array_tree.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/wiggle_to_binned_array.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/wiggle_to_chr_binned_array.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' patch-shebang: ./scripts/wiggle_to_simple.py: changing `/usr/bin/env python' to `/gnu/store/44s0j9is012nbww47d00pkxlznc92g9q-python-wrapper-3.8.2/bin/python' phase `patch-source-shebangs' succeeded after 0.1 seconds starting phase `patch-generated-file-shebangs' patch-shebang: ./lib/bx/pwm/bed_score_aligned_pwm.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./lib/bx/pwm/bed_score_aligned_string.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./lib/bx/pwm/maf_select_motifs.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./lib/bx/pwm/pwm_score_maf.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./lib/bx/pwm/pwm_score_motifs.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./lib/bx/pwm/pwm_score_positions.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./scripts/bed_build_windows.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./scripts/bed_complement.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./scripts/bed_count_by_interval.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./scripts/bed_count_overlapping.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./scripts/bed_rand_intersect.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./scripts/div_snp_table_chr.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./scripts/interval_join.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./scripts/lzop_build_offset_table.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./scripts/maf_count.py: warning: no binary for interpreter `python2.3' found in $PATH patch-shebang: ./scripts/maf_covered_ranges.py: warning: no binary for interpreter `python2.3' found in $PATH patch-shebang: ./scripts/maf_div_sites.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./scripts/maf_gc_content.py: warning: no binary for interpreter `python2.3' found in $PATH patch-shebang: ./scripts/maf_interval_alignibility.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./scripts/maf_limit_to_species.py: warning: no binary for interpreter `python2.3' found in $PATH patch-shebang: ./scripts/maf_mapping_word_frequency.py: warning: no binary for interpreter `python2.3' found in $PATH patch-shebang: ./scripts/maf_mean_length_ungapped_piece.py: warning: no binary for interpreter `python2.3' found in $PATH patch-shebang: ./scripts/maf_percent_columns_matching.py: warning: no binary for interpreter `python2.3' found in $PATH patch-shebang: ./scripts/maf_percent_identity.py: warning: no binary for interpreter `python2.3' found in $PATH patch-shebang: ./scripts/maf_print_chroms.py: warning: no binary for interpreter `python2.3' found in $PATH patch-shebang: ./scripts/maf_species_in_all_files.py: warning: no binary for interpreter `python2.4' found in $PATH patch-shebang: ./scripts/maf_split_by_src.py: warning: no binary for interpreter `python2.3' found in $PATH patch-shebang: ./scripts/maf_to_fasta.py: warning: no binary for interpreter `python.' found in $PATH patch-shebang: ./scripts/maf_word_frequency.py: warning: no binary for interpreter `python2.3' found in $PATH patch-shebang: ./scripts/tfloc_summary.py: warning: no binary for interpreter `python2.3' found in $PATH phase `patch-generated-file-shebangs' succeeded after 0.0 seconds starting phase `build' running "python setup.py" with command "build" and parameters () running build running build_py creating build creating build/lib.linux-i686-3.8 copying lib/psyco_full.py -> build/lib.linux-i686-3.8 creating build/lib.linux-i686-3.8/bx copying lib/bx/wiggle.py -> build/lib.linux-i686-3.8/bx copying lib/bx/wiggle_tests.py -> build/lib.linux-i686-3.8/bx copying lib/bx/binned_array.py -> build/lib.linux-i686-3.8/bx copying lib/bx/bitset_builders.py -> build/lib.linux-i686-3.8/bx copying lib/bx/bitset_tests.py -> build/lib.linux-i686-3.8/bx copying lib/bx/seqmapping.py -> build/lib.linux-i686-3.8/bx copying lib/bx/__init__.py -> build/lib.linux-i686-3.8/bx copying lib/bx/filter.py -> build/lib.linux-i686-3.8/bx copying lib/bx/bitset_utils.py -> build/lib.linux-i686-3.8/bx copying lib/bx/interval_index_file.py -> build/lib.linux-i686-3.8/bx copying lib/bx/interval_index_file_tests.py -> build/lib.linux-i686-3.8/bx copying lib/bx/gene_reader.py -> build/lib.linux-i686-3.8/bx copying lib/bx/seqmapping_tests.py -> build/lib.linux-i686-3.8/bx copying lib/bx/binned_array_tests.py -> build/lib.linux-i686-3.8/bx creating build/lib.linux-i686-3.8/bx_extras copying lib/bx_extras/lrucache.py -> build/lib.linux-i686-3.8/bx_extras copying lib/bx_extras/pstat.py -> build/lib.linux-i686-3.8/bx_extras copying lib/bx_extras/fpconst_tests.py -> build/lib.linux-i686-3.8/bx_extras copying lib/bx_extras/__init__.py -> build/lib.linux-i686-3.8/bx_extras copying lib/bx_extras/stats.py -> build/lib.linux-i686-3.8/bx_extras copying lib/bx_extras/pyparsing.py -> build/lib.linux-i686-3.8/bx_extras copying lib/bx_extras/fpconst.py -> build/lib.linux-i686-3.8/bx_extras creating build/lib.linux-i686-3.8/bx/bbi copying lib/bx/bbi/bigwig_tests.py -> build/lib.linux-i686-3.8/bx/bbi copying lib/bx/bbi/__init__.py -> build/lib.linux-i686-3.8/bx/bbi creating build/lib.linux-i686-3.8/bx/arrays copying lib/bx/arrays/array_tree_tests.py -> build/lib.linux-i686-3.8/bx/arrays copying lib/bx/arrays/__init__.py -> build/lib.linux-i686-3.8/bx/arrays creating build/lib.linux-i686-3.8/bx/phylo copying lib/bx/phylo/phast.py -> build/lib.linux-i686-3.8/bx/phylo copying lib/bx/phylo/newick_tests.py -> build/lib.linux-i686-3.8/bx/phylo copying lib/bx/phylo/__init__.py -> build/lib.linux-i686-3.8/bx/phylo copying lib/bx/phylo/phast_tests.py -> build/lib.linux-i686-3.8/bx/phylo copying lib/bx/phylo/newick.py -> build/lib.linux-i686-3.8/bx/phylo creating build/lib.linux-i686-3.8/bx/pwm copying lib/bx/pwm/pwm_score_motifs.py -> build/lib.linux-i686-3.8/bx/pwm copying lib/bx/pwm/pwm_score_maf.py -> build/lib.linux-i686-3.8/bx/pwm copying lib/bx/pwm/bed_score_aligned_string.py -> build/lib.linux-i686-3.8/bx/pwm copying lib/bx/pwm/pwm_score_positions.py -> build/lib.linux-i686-3.8/bx/pwm copying lib/bx/pwm/maf_select_motifs.py -> build/lib.linux-i686-3.8/bx/pwm copying lib/bx/pwm/__init__.py -> build/lib.linux-i686-3.8/bx/pwm copying lib/bx/pwm/bed_score_aligned_pwm.py -> build/lib.linux-i686-3.8/bx/pwm copying lib/bx/pwm/pwm_tests.py -> build/lib.linux-i686-3.8/bx/pwm copying lib/bx/pwm/position_weight_matrix.py -> build/lib.linux-i686-3.8/bx/pwm creating build/lib.linux-i686-3.8/bx/seq copying lib/bx/seq/twobit.py -> build/lib.linux-i686-3.8/bx/seq copying lib/bx/seq/core.py -> build/lib.linux-i686-3.8/bx/seq copying lib/bx/seq/nib.py -> build/lib.linux-i686-3.8/bx/seq copying lib/bx/seq/fasta_tests.py -> build/lib.linux-i686-3.8/bx/seq copying lib/bx/seq/twobit_tests.py -> build/lib.linux-i686-3.8/bx/seq copying lib/bx/seq/nib_tests.py -> build/lib.linux-i686-3.8/bx/seq copying lib/bx/seq/fasta.py -> build/lib.linux-i686-3.8/bx/seq copying lib/bx/seq/seq_tests.py -> build/lib.linux-i686-3.8/bx/seq copying lib/bx/seq/__init__.py -> build/lib.linux-i686-3.8/bx/seq copying lib/bx/seq/qdna.py -> build/lib.linux-i686-3.8/bx/seq copying lib/bx/seq/seq.py -> build/lib.linux-i686-3.8/bx/seq copying lib/bx/seq/qdna_tests.py -> build/lib.linux-i686-3.8/bx/seq creating build/lib.linux-i686-3.8/bx/misc copying lib/bx/misc/seeklzop_tests.py -> build/lib.linux-i686-3.8/bx/misc copying lib/bx/misc/seeklzop.py -> build/lib.linux-i686-3.8/bx/misc copying lib/bx/misc/cdb_tests.py -> build/lib.linux-i686-3.8/bx/misc copying lib/bx/misc/cdb.py -> build/lib.linux-i686-3.8/bx/misc copying lib/bx/misc/filecache_tests.py -> build/lib.linux-i686-3.8/bx/misc copying lib/bx/misc/__init__.py -> build/lib.linux-i686-3.8/bx/misc copying lib/bx/misc/readlengths.py -> build/lib.linux-i686-3.8/bx/misc copying lib/bx/misc/bgzf_tests.py -> build/lib.linux-i686-3.8/bx/misc copying lib/bx/misc/binary_file.py -> build/lib.linux-i686-3.8/bx/misc copying lib/bx/misc/filecache.py -> build/lib.linux-i686-3.8/bx/misc copying lib/bx/misc/seekbzip2.py -> build/lib.linux-i686-3.8/bx/misc copying lib/bx/misc/seekbzip2_tests.py -> build/lib.linux-i686-3.8/bx/misc creating build/lib.linux-i686-3.8/bx/align copying lib/bx/align/maf_tests.py -> build/lib.linux-i686-3.8/bx/align copying lib/bx/align/core.py -> build/lib.linux-i686-3.8/bx/align copying lib/bx/align/epo.py -> build/lib.linux-i686-3.8/bx/align copying lib/bx/align/lav.py -> build/lib.linux-i686-3.8/bx/align copying lib/bx/align/__init__.py -> build/lib.linux-i686-3.8/bx/align copying lib/bx/align/maf.py -> build/lib.linux-i686-3.8/bx/align copying lib/bx/align/score.py -> build/lib.linux-i686-3.8/bx/align copying lib/bx/align/epo_tests.py -> build/lib.linux-i686-3.8/bx/align copying lib/bx/align/score_tests.py -> build/lib.linux-i686-3.8/bx/align copying lib/bx/align/axt.py -> build/lib.linux-i686-3.8/bx/align copying lib/bx/align/lav_tests.py -> build/lib.linux-i686-3.8/bx/align creating build/lib.linux-i686-3.8/bx/cookbook copying lib/bx/cookbook/argparse.py -> build/lib.linux-i686-3.8/bx/cookbook copying lib/bx/cookbook/attribute.py -> build/lib.linux-i686-3.8/bx/cookbook copying lib/bx/cookbook/progress_bar.py -> build/lib.linux-i686-3.8/bx/cookbook copying lib/bx/cookbook/__init__.py -> build/lib.linux-i686-3.8/bx/cookbook copying lib/bx/cookbook/doc_optparse.py -> build/lib.linux-i686-3.8/bx/cookbook creating build/lib.linux-i686-3.8/bx/tabular copying lib/bx/tabular/io.py -> build/lib.linux-i686-3.8/bx/tabular copying lib/bx/tabular/__init__.py -> build/lib.linux-i686-3.8/bx/tabular creating build/lib.linux-i686-3.8/bx/intervals copying lib/bx/intervals/random_intervals.py -> build/lib.linux-i686-3.8/bx/intervals copying lib/bx/intervals/io.py -> build/lib.linux-i686-3.8/bx/intervals copying lib/bx/intervals/intersection_tests.py -> build/lib.linux-i686-3.8/bx/intervals copying lib/bx/intervals/__init__.py -> build/lib.linux-i686-3.8/bx/intervals copying lib/bx/intervals/cluster_tests.py -> build/lib.linux-i686-3.8/bx/intervals creating build/lib.linux-i686-3.8/bx/intseq copying lib/bx/intseq/__init__.py -> build/lib.linux-i686-3.8/bx/intseq creating build/lib.linux-i686-3.8/bx/motif copying lib/bx/motif/__init__.py -> build/lib.linux-i686-3.8/bx/motif copying lib/bx/motif/pwm.py -> build/lib.linux-i686-3.8/bx/motif copying lib/bx/motif/pwm_tests.py -> build/lib.linux-i686-3.8/bx/motif creating build/lib.linux-i686-3.8/bx/align/sitemask copying lib/bx/align/sitemask/cpg.py -> build/lib.linux-i686-3.8/bx/align/sitemask copying lib/bx/align/sitemask/core.py -> build/lib.linux-i686-3.8/bx/align/sitemask copying lib/bx/align/sitemask/quality.py -> build/lib.linux-i686-3.8/bx/align/sitemask copying lib/bx/align/sitemask/sitemask_tests.py -> build/lib.linux-i686-3.8/bx/align/sitemask copying lib/bx/align/sitemask/__init__.py -> build/lib.linux-i686-3.8/bx/align/sitemask creating build/lib.linux-i686-3.8/bx/align/tools copying lib/bx/align/tools/chop.py -> build/lib.linux-i686-3.8/bx/align/tools copying lib/bx/align/tools/thread.py -> build/lib.linux-i686-3.8/bx/align/tools copying lib/bx/align/tools/fuse.py -> build/lib.linux-i686-3.8/bx/align/tools copying lib/bx/align/tools/tile.py -> build/lib.linux-i686-3.8/bx/align/tools copying lib/bx/align/tools/__init__.py -> build/lib.linux-i686-3.8/bx/align/tools creating build/lib.linux-i686-3.8/bx/intervals/operations copying lib/bx/intervals/operations/subtract.py -> build/lib.linux-i686-3.8/bx/intervals/operations copying lib/bx/intervals/operations/complement.py -> build/lib.linux-i686-3.8/bx/intervals/operations copying lib/bx/intervals/operations/join.py -> build/lib.linux-i686-3.8/bx/intervals/operations copying lib/bx/intervals/operations/concat.py -> build/lib.linux-i686-3.8/bx/intervals/operations copying lib/bx/intervals/operations/quicksect.py -> build/lib.linux-i686-3.8/bx/intervals/operations copying lib/bx/intervals/operations/base_coverage.py -> build/lib.linux-i686-3.8/bx/intervals/operations copying lib/bx/intervals/operations/__init__.py -> build/lib.linux-i686-3.8/bx/intervals/operations copying lib/bx/intervals/operations/merge.py -> build/lib.linux-i686-3.8/bx/intervals/operations copying lib/bx/intervals/operations/coverage.py -> build/lib.linux-i686-3.8/bx/intervals/operations copying lib/bx/intervals/operations/find_clusters.py -> build/lib.linux-i686-3.8/bx/intervals/operations copying lib/bx/intervals/operations/intersect.py -> build/lib.linux-i686-3.8/bx/intervals/operations creating build/lib.linux-i686-3.8/bx/motif/io copying lib/bx/motif/io/transfac_tests.py -> build/lib.linux-i686-3.8/bx/motif/io copying lib/bx/motif/io/__init__.py -> build/lib.linux-i686-3.8/bx/motif/io copying lib/bx/motif/io/transfac.py -> build/lib.linux-i686-3.8/bx/motif/io creating build/lib.linux-i686-3.8/bx/motif/logo copying lib/bx/motif/logo/__init__.py -> build/lib.linux-i686-3.8/bx/motif/logo copying lib/bx/motif/logo/template.ps -> build/lib.linux-i686-3.8/bx/motif/logo Skipping optional fixer: buffer Skipping optional fixer: idioms Skipping optional fixer: set_literal Skipping optional fixer: ws_comma running build_ext skipping 'lib/bx/bitset.c' Cython extension (up-to-date) skipping 'lib/bx/intervals/intersection.c' Cython extension (up-to-date) skipping 'lib/bx/align/_core.c' Cython extension (up-to-date) skipping 'lib/bx/seq/_nib.c' Cython extension (up-to-date) skipping 'lib/bx/seq/_twobit.c' Cython extension (up-to-date) skipping 'lib/bx/_seqmapping.c' Cython extension (up-to-date) skipping 'lib/bx/misc/bgzf.c' Cython extension (up-to-date) skipping 'lib/bx/intervals/cluster.c' Cython extension (up-to-date) skipping 'lib/bx/pwm/_position_weight_matrix.c' Cython extension (up-to-date) skipping 'lib/bx/motif/_pwm.c' Cython extension (up-to-date) skipping 'lib/bx/arrays/array_tree.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bpt_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/cirtree_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bbi_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bigwig_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bigbed_file.c' Cython extension (up-to-date) skipping 'lib/bx/align/_epo.c' Cython extension (up-to-date) skipping 'lib/bx/arrays/bed.c' Cython extension (up-to-date) skipping 'lib/bx/arrays/wiggle.c' Cython extension (up-to-date) skipping 'lib/bx/align/sitemask/_cpg.c' Cython extension (up-to-date) skipping 'lib/bx/intseq/ngramcount.c' Cython extension (up-to-date) skipping 'lib/bx/misc/_seekbzip2.c' Cython extension (up-to-date) building 'bx.bitset' extension creating build/temp.linux-i686-3.8 creating build/temp.linux-i686-3.8/lib creating build/temp.linux-i686-3.8/lib/bx creating build/temp.linux-i686-3.8/src creating build/temp.linux-i686-3.8/src/kent gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -Isrc/kent -Isrc -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c lib/bx/bitset.c -o build/temp.linux-i686-3.8/lib/bx/bitset.o lib/bx/bitset.c: In function ‘__Pyx_modinit_type_init_code’: lib/bx/bitset.c:5940:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_6bitset_BitSet.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/bitset.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ lib/bx/bitset.c:5948:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_6bitset_BinnedBitSet.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/bitset.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -Isrc/kent -Isrc -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c src/binBits.c -o build/temp.linux-i686-3.8/src/binBits.o gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -Isrc/kent -Isrc -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c src/kent/bits.c -o build/temp.linux-i686-3.8/src/kent/bits.o src/kent/bits.c:9:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] static char const rcsid[] = "$Id: bits.c,v 1.20 2008/03/25 16:32:31 angie Exp $"; ^~~~~ gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -Isrc/kent -Isrc -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c src/kent/common.c -o build/temp.linux-i686-3.8/src/kent/common.o gcc -pthread -shared -Wl,-rpath=/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib build/temp.linux-i686-3.8/lib/bx/bitset.o build/temp.linux-i686-3.8/src/binBits.o build/temp.linux-i686-3.8/src/kent/bits.o build/temp.linux-i686-3.8/src/kent/common.o -L/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib -o build/lib.linux-i686-3.8/bx/bitset.cpython-38-i386-linux-gnu.so building 'bx.intervals.intersection' extension creating build/temp.linux-i686-3.8/lib/bx/intervals gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c lib/bx/intervals/intersection.c -o build/temp.linux-i686-3.8/lib/bx/intervals/intersection.o lib/bx/intervals/intersection.c: In function ‘__Pyx_modinit_type_init_code’: lib/bx/intervals/intersection.c:9819:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_9intervals_12intersection_IntervalNode.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/intervals/intersection.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ lib/bx/intervals/intersection.c:9828:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_9intervals_12intersection_Interval.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/intervals/intersection.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ lib/bx/intervals/intersection.c:9836:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_9intervals_12intersection_IntervalTree.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/intervals/intersection.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ gcc -pthread -shared -Wl,-rpath=/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib build/temp.linux-i686-3.8/lib/bx/intervals/intersection.o -L/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib -o build/lib.linux-i686-3.8/bx/intervals/intersection.cpython-38-i386-linux-gnu.so building 'bx.align._core' extension creating build/temp.linux-i686-3.8/lib/bx/align gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c lib/bx/align/_core.c -o build/temp.linux-i686-3.8/lib/bx/align/_core.o gcc -pthread -shared -Wl,-rpath=/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib build/temp.linux-i686-3.8/lib/bx/align/_core.o -L/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib -o build/lib.linux-i686-3.8/bx/align/_core.cpython-38-i386-linux-gnu.so building 'bx.seq._nib' extension creating build/temp.linux-i686-3.8/lib/bx/seq gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c lib/bx/seq/_nib.c -o build/temp.linux-i686-3.8/lib/bx/seq/_nib.o gcc -pthread -shared -Wl,-rpath=/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib build/temp.linux-i686-3.8/lib/bx/seq/_nib.o -L/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib -o build/lib.linux-i686-3.8/bx/seq/_nib.cpython-38-i386-linux-gnu.so building 'bx.seq._twobit' extension gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c lib/bx/seq/_twobit.c -o build/temp.linux-i686-3.8/lib/bx/seq/_twobit.o gcc -pthread -shared -Wl,-rpath=/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib build/temp.linux-i686-3.8/lib/bx/seq/_twobit.o -L/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib -o build/lib.linux-i686-3.8/bx/seq/_twobit.cpython-38-i386-linux-gnu.so building 'bx._seqmapping' extension gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c lib/bx/_seqmapping.c -o build/temp.linux-i686-3.8/lib/bx/_seqmapping.o lib/bx/_seqmapping.c: In function ‘__pyx_pf_2bx_11_seqmapping_21CharToIntArrayMapping_6translate’: lib/bx/_seqmapping.c:1663:3: warning: ‘PyObject_AsWriteBuffer’ is deprecated [-Wdeprecated-declarations] __pyx_t_1 = PyObject_AsWriteBuffer(__pyx_v_rval, ((void **)(&__pyx_v_t_buf)), (&__pyx_v_t_len)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 52, __pyx_L1_error) ^~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:147:0, from lib/bx/_seqmapping.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/abstract.h:348:17: note: declared here PyAPI_FUNC(int) PyObject_AsWriteBuffer(PyObject *obj, ^~~~~~~~~~~~~~~~~~~~~~ lib/bx/_seqmapping.c: In function ‘__pyx_pf_2bx_11_seqmapping_21CharToIntArrayMapping_8translate_list’: lib/bx/_seqmapping.c:1863:3: warning: ‘PyObject_AsWriteBuffer’ is deprecated [-Wdeprecated-declarations] __pyx_t_7 = PyObject_AsWriteBuffer(__pyx_v_rval, ((void **)(&__pyx_v_t_buf)), (&__pyx_v_t_len)); if (unlikely(__pyx_t_7 == ((int)-1))) __PYX_ERR(0, 75, __pyx_L1_error) ^~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:147:0, from lib/bx/_seqmapping.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/abstract.h:348:17: note: declared here PyAPI_FUNC(int) PyObject_AsWriteBuffer(PyObject *obj, ^~~~~~~~~~~~~~~~~~~~~~ lib/bx/_seqmapping.c: In function ‘__pyx_pf_2bx_11_seqmapping_15IntToIntMapping_6translate’: lib/bx/_seqmapping.c:3000:3: warning: ‘PyObject_AsReadBuffer’ is deprecated [-Wdeprecated-declarations] __pyx_t_1 = PyObject_AsReadBuffer(__pyx_v_src, ((void const **)(&__pyx_v_s_buf)), (&__pyx_v_s_len)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 132, __pyx_L1_error) ^~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:147:0, from lib/bx/_seqmapping.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/abstract.h:337:17: note: declared here PyAPI_FUNC(int) PyObject_AsReadBuffer(PyObject *obj, ^~~~~~~~~~~~~~~~~~~~~ lib/bx/_seqmapping.c:3101:3: warning: ‘PyObject_AsWriteBuffer’ is deprecated [-Wdeprecated-declarations] __pyx_t_1 = PyObject_AsWriteBuffer(__pyx_v_rval, ((void **)(&__pyx_v_t_buf)), (&__pyx_v_t_len)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 137, __pyx_L1_error) ^~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:147:0, from lib/bx/_seqmapping.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/abstract.h:348:17: note: declared here PyAPI_FUNC(int) PyObject_AsWriteBuffer(PyObject *obj, ^~~~~~~~~~~~~~~~~~~~~~ lib/bx/_seqmapping.c: In function ‘__Pyx_modinit_type_init_code’: lib/bx/_seqmapping.c:5188:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_11_seqmapping_CharToIntArrayMapping.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/_seqmapping.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ lib/bx/_seqmapping.c:5196:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_11_seqmapping_IntToIntMapping.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/_seqmapping.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ gcc -pthread -shared -Wl,-rpath=/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib build/temp.linux-i686-3.8/lib/bx/_seqmapping.o -L/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib -o build/lib.linux-i686-3.8/bx/_seqmapping.cpython-38-i386-linux-gnu.so building 'bx.misc.bgzf' extension creating build/temp.linux-i686-3.8/lib/bx/misc creating build/temp.linux-i686-3.8/src/samtools gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -Isrc/samtools -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c lib/bx/misc/bgzf.c -o build/temp.linux-i686-3.8/lib/bx/misc/bgzf.o lib/bx/misc/bgzf.c: In function ‘__Pyx_modinit_type_init_code’: lib/bx/misc/bgzf.c:2030:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_4misc_4bgzf_BGZFFile.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/misc/bgzf.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -Isrc/samtools -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c src/samtools/bgzf.c -o build/temp.linux-i686-3.8/src/samtools/bgzf.o src/samtools/bgzf.c: In function ‘cache_block’: src/samtools/bgzf.c:422:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ((kh_size(h) + 1) * MAX_BLOCK_SIZE > fp->cache_size) { ^ src/samtools/bgzf.c: In function ‘read_block’: src/samtools/bgzf.c:462:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (count != sizeof(header)) { ^~ src/samtools/bgzf.c: In function ‘bgzf_close’: src/samtools/bgzf.c:603:8: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] int count, block_length = deflate_block(fp, 0); ^~~~~ gcc -pthread -shared -Wl,-rpath=/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib build/temp.linux-i686-3.8/lib/bx/misc/bgzf.o build/temp.linux-i686-3.8/src/samtools/bgzf.o -L/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib -lz -o build/lib.linux-i686-3.8/bx/misc/bgzf.cpython-38-i386-linux-gnu.so building 'bx.intervals.cluster' extension gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -Isrc -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c lib/bx/intervals/cluster.c -o build/temp.linux-i686-3.8/lib/bx/intervals/cluster.o lib/bx/intervals/cluster.c: In function ‘__Pyx_modinit_type_init_code’: lib/bx/intervals/cluster.c:2163:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_9intervals_7cluster_ClusterTree.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/intervals/cluster.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -Isrc -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c src/cluster.c -o build/temp.linux-i686-3.8/src/cluster.o gcc -pthread -shared -Wl,-rpath=/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib build/temp.linux-i686-3.8/lib/bx/intervals/cluster.o build/temp.linux-i686-3.8/src/cluster.o -L/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib -o build/lib.linux-i686-3.8/bx/intervals/cluster.cpython-38-i386-linux-gnu.so building 'bx.pwm._position_weight_matrix' extension creating build/temp.linux-i686-3.8/lib/bx/pwm gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -Isrc -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c lib/bx/pwm/_position_weight_matrix.c -o build/temp.linux-i686-3.8/lib/bx/pwm/_position_weight_matrix.o gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -Isrc -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c src/pwm_utils.c -o build/temp.linux-i686-3.8/src/pwm_utils.o src/pwm_utils.c: In function ‘main’: src/pwm_utils.c:11:27: warning: implicit declaration of function ‘strlen’ [-Wimplicit-function-declaration] int string_size = strlen(argv[1]); ^~~~~~ src/pwm_utils.c:11:27: warning: incompatible implicit declaration of built-in function ‘strlen’ src/pwm_utils.c:11:27: note: include ‘’ or provide a declaration of ‘strlen’ src/pwm_utils.c:12:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (strlen(argv[2]) != string_size) { ^~ gcc -pthread -shared -Wl,-rpath=/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib build/temp.linux-i686-3.8/lib/bx/pwm/_position_weight_matrix.o build/temp.linux-i686-3.8/src/pwm_utils.o -L/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib -o build/lib.linux-i686-3.8/bx/pwm/_position_weight_matrix.cpython-38-i386-linux-gnu.so building 'bx.motif._pwm' extension creating build/temp.linux-i686-3.8/lib/bx/motif gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c lib/bx/motif/_pwm.c -o build/temp.linux-i686-3.8/lib/bx/motif/_pwm.o In file included from /gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1830:0, from /gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/motif/_pwm.c:565: /gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:21:0, from /gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/motif/_pwm.c:565: /gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] _import_array(void) ^~~~~~~~~~~~~ gcc -pthread -shared -Wl,-rpath=/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib build/temp.linux-i686-3.8/lib/bx/motif/_pwm.o -L/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib -o build/lib.linux-i686-3.8/bx/motif/_pwm.cpython-38-i386-linux-gnu.so building 'bx.arrays.array_tree' extension creating build/temp.linux-i686-3.8/lib/bx/arrays gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c lib/bx/arrays/array_tree.c -o build/temp.linux-i686-3.8/lib/bx/arrays/array_tree.o In file included from /gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1830:0, from /gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/arrays/array_tree.c:567: /gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ lib/bx/arrays/array_tree.c: In function ‘__Pyx_modinit_type_init_code’: lib/bx/arrays/array_tree.c:23805:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_6arrays_10array_tree_FileArrayTreeDict.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/arrays/array_tree.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ lib/bx/arrays/array_tree.c:23815:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_6arrays_10array_tree_FileArrayTree.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/arrays/array_tree.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ lib/bx/arrays/array_tree.c:23824:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_6arrays_10array_tree_Summary.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/arrays/array_tree.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ lib/bx/arrays/array_tree.c:23835:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_6arrays_10array_tree_ArrayTreeNode.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/arrays/array_tree.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ lib/bx/arrays/array_tree.c:23844:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_6arrays_10array_tree_ArrayTreeLeaf.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/arrays/array_tree.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ lib/bx/arrays/array_tree.c:23852:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_6arrays_10array_tree_ArrayTree.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/arrays/array_tree.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ gcc -pthread -shared -Wl,-rpath=/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib build/temp.linux-i686-3.8/lib/bx/arrays/array_tree.o -L/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib -o build/lib.linux-i686-3.8/bx/arrays/array_tree.cpython-38-i386-linux-gnu.so building 'bx.bbi.bpt_file' extension creating build/temp.linux-i686-3.8/lib/bx/bbi gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c lib/bx/bbi/bpt_file.c -o build/temp.linux-i686-3.8/lib/bx/bbi/bpt_file.o lib/bx/bbi/bpt_file.c: In function ‘__pyx_pf_2bx_3bbi_8bpt_file_7BPTFile_6find’: lib/bx/bbi/bpt_file.c:2577:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] __pyx_t_2 = ((__pyx_t_1 > __pyx_v_self->key_size) != 0); ^ lib/bx/bbi/bpt_file.c:2608:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] __pyx_t_2 = ((__pyx_t_1 < __pyx_v_self->key_size) != 0); ^ lib/bx/bbi/bpt_file.c: In function ‘__Pyx_modinit_type_init_code’: lib/bx/bbi/bpt_file.c:3891:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_3bbi_8bpt_file_BPTFile.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/bbi/bpt_file.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ gcc -pthread -shared -Wl,-rpath=/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib build/temp.linux-i686-3.8/lib/bx/bbi/bpt_file.o -L/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib -o build/lib.linux-i686-3.8/bx/bbi/bpt_file.cpython-38-i386-linux-gnu.so building 'bx.bbi.cirtree_file' extension gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c lib/bx/bbi/cirtree_file.c -o build/temp.linux-i686-3.8/lib/bx/bbi/cirtree_file.o lib/bx/bbi/cirtree_file.c: In function ‘__Pyx_modinit_type_init_code’: lib/bx/bbi/cirtree_file.c:5188:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_3bbi_12cirtree_file_CIRTreeFile.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/bbi/cirtree_file.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ gcc -pthread -shared -Wl,-rpath=/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib build/temp.linux-i686-3.8/lib/bx/bbi/cirtree_file.o -L/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib -o build/lib.linux-i686-3.8/bx/bbi/cirtree_file.cpython-38-i386-linux-gnu.so building 'bx.bbi.bbi_file' extension gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c lib/bx/bbi/bbi_file.c -o build/temp.linux-i686-3.8/lib/bx/bbi/bbi_file.o In file included from /gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1830:0, from /gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/bbi/bbi_file.c:567: /gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ lib/bx/bbi/bbi_file.c: In function ‘__Pyx_modinit_type_init_code’: lib/bx/bbi/bbi_file.c:19473:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_3bbi_8bbi_file_SummaryBlock.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/bbi/bbi_file.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ lib/bx/bbi/bbi_file.c:19483:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_3bbi_8bbi_file_SummarizedData.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/bbi/bbi_file.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ lib/bx/bbi/bbi_file.c:19500:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_3bbi_8bbi_file_BBIFile.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/bbi/bbi_file.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ lib/bx/bbi/bbi_file.c:19511:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_3bbi_8bbi_file_BlockHandler.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/bbi/bbi_file.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ lib/bx/bbi/bbi_file.c:19523:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_3bbi_8bbi_file_ZoomLevel.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/bbi/bbi_file.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ gcc -pthread -shared -Wl,-rpath=/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib build/temp.linux-i686-3.8/lib/bx/bbi/bbi_file.o -L/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib -o build/lib.linux-i686-3.8/bx/bbi/bbi_file.cpython-38-i386-linux-gnu.so building 'bx.bbi.bigwig_file' extension gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c lib/bx/bbi/bigwig_file.c -o build/temp.linux-i686-3.8/lib/bx/bbi/bigwig_file.o In file included from /gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1830:0, from /gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/bbi/bigwig_file.c:567: /gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_18BigWigBlockHandler_handle_block’: lib/bx/bbi/bigwig_file.c:3219:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] __pyx_t_12 = ((__pyx_v_s < __pyx_v_self->start) != 0); ^ lib/bx/bbi/bigwig_file.c:3248:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] __pyx_t_12 = ((__pyx_v_e > __pyx_v_self->end) != 0); ^ lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_29ArrayAccumulatingBlockHandler_handle_interval_value’: lib/bx/bbi/bigwig_file.c:5128:76: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (__pyx_v_i = (__pyx_v_s - __pyx_v_self->__pyx_base.start); __pyx_v_i < __pyx_t_2; __pyx_v_i++) { ^ lib/bx/bbi/bigwig_file.c: In function ‘__Pyx_modinit_type_init_code’: lib/bx/bbi/bigwig_file.c:12869:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_3bbi_11bigwig_file_BigWigBlockHandler.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/bbi/bigwig_file.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ lib/bx/bbi/bigwig_file.c:12882:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_3bbi_11bigwig_file_SummarizingBlockHandler.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/bbi/bigwig_file.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ lib/bx/bbi/bigwig_file.c:12895:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_3bbi_11bigwig_file_IntervalAccumulatingBlockHandler.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/bbi/bigwig_file.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ lib/bx/bbi/bigwig_file.c:12908:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_3bbi_11bigwig_file_ArrayAccumulatingBlockHandler.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/bbi/bigwig_file.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ lib/bx/bbi/bigwig_file.c:12925:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_3bbi_11bigwig_file_BigWigFile.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/bbi/bigwig_file.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_18BigWigBlockHandler_handle_block’: lib/bx/bbi/bigwig_file.c:3305:15: warning: ‘__pyx_v_val’ may be used uninitialized in this function [-Wmaybe-uninitialized] __pyx_t_5 = ((struct __pyx_vtabstruct_2bx_3bbi_11bigwig_file_BigWigBlockHandler *)__pyx_v_self->__pyx_base.__pyx_vtab)->handle_interval_value(__pyx_v_self, __pyx_v_s, __pyx_v_e, __pyx_v_val); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 75, __pyx_L1_error) ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/bx/bbi/bigwig_file.c:3248:51: warning: ‘__pyx_v_e’ may be used uninitialized in this function [-Wmaybe-uninitialized] __pyx_t_12 = ((__pyx_v_e > __pyx_v_self->end) != 0); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ lib/bx/bbi/bigwig_file.c:2589:7: warning: ‘__pyx_v_s’ may be used uninitialized in this function [-Wmaybe-uninitialized] int __pyx_v_s; ^~~~~~~~~ gcc -pthread -shared -Wl,-rpath=/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib build/temp.linux-i686-3.8/lib/bx/bbi/bigwig_file.o -L/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib -o build/lib.linux-i686-3.8/bx/bbi/bigwig_file.cpython-38-i386-linux-gnu.so building 'bx.bbi.bigbed_file' extension gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c lib/bx/bbi/bigbed_file.c -o build/temp.linux-i686-3.8/lib/bx/bbi/bigbed_file.o In file included from /gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1830:0, from /gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/bbi/bigbed_file.c:567: /gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ lib/bx/bbi/bigbed_file.c: In function ‘__Pyx_modinit_type_init_code’: lib/bx/bbi/bigbed_file.c:11023:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_3bbi_11bigbed_file_BigBedBlockHandler.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/bbi/bigbed_file.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ lib/bx/bbi/bigbed_file.c:11036:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_3bbi_11bigbed_file_SummarizingBlockHandler.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/bbi/bigbed_file.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ lib/bx/bbi/bigbed_file.c:11049:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_3bbi_11bigbed_file_IntervalAccumulatingBlockHandler.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/bbi/bigbed_file.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ lib/bx/bbi/bigbed_file.c:11065:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_3bbi_11bigbed_file_BigBedFile.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/bbi/bigbed_file.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ gcc -pthread -shared -Wl,-rpath=/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib build/temp.linux-i686-3.8/lib/bx/bbi/bigbed_file.o -L/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib -o build/lib.linux-i686-3.8/bx/bbi/bigbed_file.cpython-38-i386-linux-gnu.so building 'bx.align._epo' extension gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c lib/bx/align/_epo.c -o build/temp.linux-i686-3.8/lib/bx/align/_epo.o In file included from /gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1830:0, from /gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/align/_epo.c:567: /gnu/store/2h8lnlsdw41h7ivn8vd0c6prq9ric1qn-python-numpy-1.17.3/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ lib/bx/align/_epo.c: In function ‘__pyx_f_2bx_5align_4_epo_bed_union’: lib/bx/align/_epo.c:5474:237: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] __pyx_t_5 = (((*__Pyx_BufPtrStrided2d(__pyx_t_5numpy_uint64_t *, __pyx_pybuffernd_elements.rcbuffer->pybuffer.buf, __pyx_t_19, __pyx_pybuffernd_elements.diminfo[0].strides, __pyx_t_20, __pyx_pybuffernd_elements.diminfo[1].strides)) <= __pyx_v_cen) != 0); ^~ lib/bx/align/_epo.c: In function ‘__Pyx_modinit_type_init_code’: lib/bx/align/_epo.c:9314:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_5align_4_epo___pyx_scope_struct__rem_dash.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/align/_epo.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ gcc -pthread -shared -Wl,-rpath=/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib build/temp.linux-i686-3.8/lib/bx/align/_epo.o -L/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib -o build/lib.linux-i686-3.8/bx/align/_epo.cpython-38-i386-linux-gnu.so building 'bx.arrays.bed' extension gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c lib/bx/arrays/bed.c -o build/temp.linux-i686-3.8/lib/bx/arrays/bed.o lib/bx/arrays/bed.c: In function ‘__Pyx_modinit_type_init_code’: lib/bx/arrays/bed.c:2934:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_6arrays_3bed_BedReader.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/arrays/bed.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ gcc -pthread -shared -Wl,-rpath=/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib build/temp.linux-i686-3.8/lib/bx/arrays/bed.o -L/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib -o build/lib.linux-i686-3.8/bx/arrays/bed.cpython-38-i386-linux-gnu.so building 'bx.arrays.wiggle' extension gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c lib/bx/arrays/wiggle.c -o build/temp.linux-i686-3.8/lib/bx/arrays/wiggle.o lib/bx/arrays/wiggle.c: In function ‘__Pyx_modinit_type_init_code’: lib/bx/arrays/wiggle.c:4171:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_6arrays_6wiggle_WiggleReader.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/arrays/wiggle.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ gcc -pthread -shared -Wl,-rpath=/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib build/temp.linux-i686-3.8/lib/bx/arrays/wiggle.o -L/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib -o build/lib.linux-i686-3.8/bx/arrays/wiggle.cpython-38-i386-linux-gnu.so building 'bx.align.sitemask._cpg' extension creating build/temp.linux-i686-3.8/lib/bx/align/sitemask gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c lib/bx/align/sitemask/_cpg.c -o build/temp.linux-i686-3.8/lib/bx/align/sitemask/_cpg.o gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c lib/bx/align/sitemask/find_cpg.c -o build/temp.linux-i686-3.8/lib/bx/align/sitemask/find_cpg.o gcc -pthread -shared -Wl,-rpath=/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib build/temp.linux-i686-3.8/lib/bx/align/sitemask/_cpg.o build/temp.linux-i686-3.8/lib/bx/align/sitemask/find_cpg.o -L/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib -o build/lib.linux-i686-3.8/bx/align/sitemask/_cpg.cpython-38-i386-linux-gnu.so building 'bx.intseq.ngramcount' extension creating build/temp.linux-i686-3.8/lib/bx/intseq gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -Isrc -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c lib/bx/intseq/ngramcount.c -o build/temp.linux-i686-3.8/lib/bx/intseq/ngramcount.o gcc -pthread -shared -Wl,-rpath=/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib build/temp.linux-i686-3.8/lib/bx/intseq/ngramcount.o -L/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib -o build/lib.linux-i686-3.8/bx/intseq/ngramcount.cpython-38-i386-linux-gnu.so building 'bx.misc._seekbzip2' extension creating build/temp.linux-i686-3.8/src/bunzip gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -Isrc/bunzip -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c lib/bx/misc/_seekbzip2.c -o build/temp.linux-i686-3.8/lib/bx/misc/_seekbzip2.o lib/bx/misc/_seekbzip2.c: In function ‘__Pyx_modinit_type_init_code’: lib/bx/misc/_seekbzip2.c:2839:3: warning: ‘tp_print’ is deprecated [-Wdeprecated-declarations] __pyx_type_2bx_4misc_10_seekbzip2_SeekBzip2.tp_print = 0; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/object.h:746:0, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/pytime.h:6, from /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/Python.h:85, from lib/bx/misc/_seekbzip2.c:4: /gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8/cpython/object.h:260:30: note: declared here Py_DEPRECATED(3.8) int (*tp_print)(PyObject *, FILE *, int); ^~~~~~~~ gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -Isrc/bunzip -I/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/include/python3.8 -c src/bunzip/micro-bunzip.c -o build/temp.linux-i686-3.8/src/bunzip/micro-bunzip.o src/bunzip/micro-bunzip.c: In function ‘get_bits’: src/bunzip/micro-bunzip.c:99:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (bd->inbufBitCount dbufSize) return RETVAL_DATA_ERROR; ^ src/bunzip/micro-bunzip.c:298:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (bd->inbufBitCountmaxLen) { ^ src/bunzip/micro-bunzip.c:400:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if(origPtr>=dbufCount) return RETVAL_DATA_ERROR; ^~ src/bunzip/micro-bunzip.c: In function ‘start_bunzip’: src/bunzip/micro-bunzip.c:629:12: warning: pointer targets in assignment differ in signedness [-Wpointer-sign] bd->inbuf=inbuf; ^ src/bunzip/micro-bunzip.c: In function ‘get_next_block’: src/bunzip/micro-bunzip.c:129:51: warning: ‘limit’ may be used uninitialized in this function [-Wmaybe-uninitialized] int dbufCount,nextSym,dbufSize,groupCount,*base,*limit,selector, ^~~~~ src/bunzip/micro-bunzip.c:129:45: warning: ‘base’ may be used uninitialized in this function [-Wmaybe-uninitialized] int dbufCount,nextSym,dbufSize,groupCount,*base,*limit,selector, ^~~~ src/bunzip/micro-bunzip.c:128:21: warning: ‘hufGroup’ may be used uninitialized in this function [-Wmaybe-uninitialized] struct group_data *hufGroup; ^~~~~~~~ gcc -pthread -shared -Wl,-rpath=/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib build/temp.linux-i686-3.8/lib/bx/misc/_seekbzip2.o build/temp.linux-i686-3.8/src/bunzip/micro-bunzip.o -L/gnu/store/jkngay2hcmxzi5y35hajq6ak6flh2108-python-3.8.2/lib -o build/lib.linux-i686-3.8/bx/misc/_seekbzip2.cpython-38-i386-linux-gnu.so running build_scripts creating build/scripts-3.8 copying and adjusting scripts/maf_filter_max_wc.py -> build/scripts-3.8 copying and adjusting scripts/maf_mapping_word_frequency.py -> build/scripts-3.8 copying and adjusting scripts/table_add_column.py -> build/scripts-3.8 copying and adjusting scripts/nib_intervals_to_fasta.py -> build/scripts-3.8 copying and adjusting scripts/mMK_bitset.py -> build/scripts-3.8 copying and adjusting scripts/maf_limit_to_species.py -> build/scripts-3.8 copying and adjusting scripts/tfloc_summary.py -> build/scripts-3.8 copying and adjusting scripts/bed_coverage_by_interval.py -> build/scripts-3.8 copying and adjusting scripts/maf_tile_2bit.py -> build/scripts-3.8 copying and adjusting scripts/maf_covered_regions.py -> build/scripts-3.8 copying and adjusting scripts/lav_to_maf.py -> build/scripts-3.8 copying and adjusting scripts/maf_region_coverage_by_src.py -> build/scripts-3.8 copying and adjusting scripts/bed_bigwig_profile.py -> build/scripts-3.8 copying and adjusting scripts/line_select.py -> build/scripts-3.8 copying and adjusting scripts/wiggle_to_simple.py -> build/scripts-3.8 copying and adjusting scripts/wiggle_to_array_tree.py -> build/scripts-3.8 copying and adjusting scripts/wiggle_to_chr_binned_array.py -> build/scripts-3.8 copying and adjusting scripts/maf_randomize.py -> build/scripts-3.8 copying and adjusting scripts/maf_chunk.py -> build/scripts-3.8 copying and adjusting scripts/maf_build_index.py -> build/scripts-3.8 copying and adjusting scripts/maf_truncate.py -> build/scripts-3.8 copying and adjusting scripts/bnMapper.py -> build/scripts-3.8 copying and adjusting scripts/wiggle_to_binned_array.py -> build/scripts-3.8 copying and adjusting scripts/maf_tile_2.py -> build/scripts-3.8 copying and adjusting scripts/bed_extend_to.py -> build/scripts-3.8 copying and adjusting scripts/maf_to_fasta.py -> build/scripts-3.8 copying and adjusting scripts/bed_diff_basewise_summary.py -> build/scripts-3.8 copying and adjusting scripts/bed_intersect_basewise.py -> build/scripts-3.8 copying and adjusting scripts/bed_count_overlapping.py -> build/scripts-3.8 copying and adjusting scripts/bed_subtract_basewise.py -> build/scripts-3.8 copying and adjusting scripts/maf_drop_overlapping.py -> build/scripts-3.8 copying and adjusting scripts/maf_col_counts_all.py -> build/scripts-3.8 copying and adjusting scripts/maf_to_concat_fasta.py -> build/scripts-3.8 copying and adjusting scripts/maf_extract_ranges_indexed.py -> build/scripts-3.8 copying and adjusting scripts/maf_interval_alignibility.py -> build/scripts-3.8 copying and adjusting scripts/maf_species_in_all_files.py -> build/scripts-3.8 copying and adjusting scripts/axt_to_maf.py -> build/scripts-3.8 copying and adjusting scripts/bed_intersect.py -> build/scripts-3.8 copying and adjusting scripts/bed_coverage.py -> build/scripts-3.8 copying and adjusting scripts/maf_extract_chrom_ranges.py -> build/scripts-3.8 copying and adjusting scripts/maf_chop.py -> build/scripts-3.8 copying and adjusting scripts/maf_select.py -> build/scripts-3.8 copying and adjusting scripts/maf_extract_ranges.py -> build/scripts-3.8 copying and adjusting scripts/aggregate_scores_in_intervals.py -> build/scripts-3.8 copying and adjusting scripts/maf_gc_content.py -> build/scripts-3.8 copying and adjusting scripts/nib_chrom_intervals_to_fasta.py -> build/scripts-3.8 copying and adjusting scripts/out_to_chain.py -> build/scripts-3.8 copying and adjusting scripts/maf_div_sites.py -> build/scripts-3.8 copying and adjusting scripts/bed_count_by_interval.py -> build/scripts-3.8 copying and adjusting scripts/interval_count_intersections.py -> build/scripts-3.8 copying and adjusting scripts/maf_mask_cpg.py -> build/scripts-3.8 copying and adjusting scripts/int_seqs_to_char_strings.py -> build/scripts-3.8 copying and adjusting scripts/align_print_template.py -> build/scripts-3.8 copying and adjusting scripts/axt_to_lav.py -> build/scripts-3.8 copying and adjusting scripts/bed_merge_overlapping.py -> build/scripts-3.8 copying and adjusting scripts/maf_percent_identity.py -> build/scripts-3.8 copying and adjusting scripts/interval_join.py -> build/scripts-3.8 copying and adjusting scripts/ucsc_gene_table_to_intervals.py -> build/scripts-3.8 copying and adjusting scripts/maf_covered_ranges.py -> build/scripts-3.8 copying and adjusting scripts/pretty_table.py -> build/scripts-3.8 copying and adjusting scripts/nib_length.py -> build/scripts-3.8 copying and adjusting scripts/maf_word_frequency.py -> build/scripts-3.8 copying and adjusting scripts/qv_to_bqv.py -> build/scripts-3.8 copying and adjusting scripts/lzop_build_offset_table.py -> build/scripts-3.8 copying and adjusting scripts/table_filter.py -> build/scripts-3.8 copying and adjusting scripts/find_in_sorted_file.py -> build/scripts-3.8 copying and adjusting scripts/maf_percent_columns_matching.py -> build/scripts-3.8 copying and adjusting scripts/maf_print_scores.py -> build/scripts-3.8 copying and adjusting scripts/bed_build_windows.py -> build/scripts-3.8 copying and adjusting scripts/maf_print_chroms.py -> build/scripts-3.8 copying and adjusting scripts/maf_tile.py -> build/scripts-3.8 copying and adjusting scripts/axt_to_fasta.py -> build/scripts-3.8 copying and adjusting scripts/mask_quality.py -> build/scripts-3.8 copying and adjusting scripts/maf_to_axt.py -> build/scripts-3.8 copying and adjusting scripts/maf_count.py -> build/scripts-3.8 copying and adjusting scripts/one_field_per_line.py -> build/scripts-3.8 copying and adjusting scripts/maf_translate_chars.py -> build/scripts-3.8 copying and adjusting scripts/div_snp_table_chr.py -> build/scripts-3.8 copying and adjusting scripts/gene_fourfold_sites.py -> build/scripts-3.8 copying and adjusting scripts/maf_filter.py -> build/scripts-3.8 copying and adjusting scripts/get_scores_in_intervals.py -> build/scripts-3.8 copying and adjusting scripts/maf_split_by_src.py -> build/scripts-3.8 copying and adjusting scripts/lav_to_axt.py -> build/scripts-3.8 copying and adjusting scripts/maf_shuffle_columns.py -> build/scripts-3.8 copying and adjusting scripts/random_lines.py -> build/scripts-3.8 copying and adjusting scripts/axt_extract_ranges.py -> build/scripts-3.8 copying and adjusting scripts/maf_col_counts.py -> build/scripts-3.8 copying and adjusting scripts/bed_rand_intersect.py -> build/scripts-3.8 copying and adjusting scripts/maf_gap_frequency.py -> build/scripts-3.8 copying and adjusting scripts/maf_to_int_seqs.py -> build/scripts-3.8 copying and adjusting scripts/maf_mean_length_ungapped_piece.py -> build/scripts-3.8 copying and adjusting scripts/prefix_lines.py -> build/scripts-3.8 copying and adjusting scripts/maf_thread_for_species.py -> build/scripts-3.8 copying and adjusting scripts/bed_complement.py -> build/scripts-3.8 changing mode of build/scripts-3.8/maf_filter_max_wc.py from 644 to 755 changing mode of build/scripts-3.8/maf_mapping_word_frequency.py from 644 to 755 changing mode of build/scripts-3.8/table_add_column.py from 644 to 755 changing mode of build/scripts-3.8/nib_intervals_to_fasta.py from 644 to 755 changing mode of build/scripts-3.8/mMK_bitset.py from 644 to 755 changing mode of build/scripts-3.8/maf_limit_to_species.py from 644 to 755 changing mode of build/scripts-3.8/tfloc_summary.py from 644 to 755 changing mode of build/scripts-3.8/bed_coverage_by_interval.py from 644 to 755 changing mode of build/scripts-3.8/maf_tile_2bit.py from 644 to 755 changing mode of build/scripts-3.8/maf_covered_regions.py from 644 to 755 changing mode of build/scripts-3.8/lav_to_maf.py from 644 to 755 changing mode of build/scripts-3.8/maf_region_coverage_by_src.py from 644 to 755 changing mode of build/scripts-3.8/bed_bigwig_profile.py from 644 to 755 changing mode of build/scripts-3.8/line_select.py from 644 to 755 changing mode of build/scripts-3.8/wiggle_to_simple.py from 644 to 755 changing mode of build/scripts-3.8/wiggle_to_array_tree.py from 644 to 755 changing mode of build/scripts-3.8/wiggle_to_chr_binned_array.py from 644 to 755 changing mode of build/scripts-3.8/maf_randomize.py from 644 to 755 changing mode of build/scripts-3.8/maf_chunk.py from 644 to 755 changing mode of build/scripts-3.8/maf_build_index.py from 644 to 755 changing mode of build/scripts-3.8/maf_truncate.py from 644 to 755 changing mode of build/scripts-3.8/bnMapper.py from 644 to 755 changing mode of build/scripts-3.8/wiggle_to_binned_array.py from 644 to 755 changing mode of build/scripts-3.8/maf_tile_2.py from 644 to 755 changing mode of build/scripts-3.8/bed_extend_to.py from 644 to 755 changing mode of build/scripts-3.8/maf_to_fasta.py from 644 to 755 changing mode of build/scripts-3.8/bed_diff_basewise_summary.py from 644 to 755 changing mode of build/scripts-3.8/bed_intersect_basewise.py from 644 to 755 changing mode of build/scripts-3.8/bed_count_overlapping.py from 644 to 755 changing mode of build/scripts-3.8/bed_subtract_basewise.py from 644 to 755 changing mode of build/scripts-3.8/maf_drop_overlapping.py from 644 to 755 changing mode of build/scripts-3.8/maf_col_counts_all.py from 644 to 755 changing mode of build/scripts-3.8/maf_to_concat_fasta.py from 644 to 755 changing mode of build/scripts-3.8/maf_extract_ranges_indexed.py from 644 to 755 changing mode of build/scripts-3.8/maf_interval_alignibility.py from 644 to 755 changing mode of build/scripts-3.8/maf_species_in_all_files.py from 644 to 755 changing mode of build/scripts-3.8/axt_to_maf.py from 644 to 755 changing mode of build/scripts-3.8/bed_intersect.py from 644 to 755 changing mode of build/scripts-3.8/bed_coverage.py from 644 to 755 changing mode of build/scripts-3.8/maf_extract_chrom_ranges.py from 644 to 755 changing mode of build/scripts-3.8/maf_chop.py from 644 to 755 changing mode of build/scripts-3.8/maf_select.py from 644 to 755 changing mode of build/scripts-3.8/maf_extract_ranges.py from 644 to 755 changing mode of build/scripts-3.8/aggregate_scores_in_intervals.py from 644 to 755 changing mode of build/scripts-3.8/maf_gc_content.py from 644 to 755 changing mode of build/scripts-3.8/nib_chrom_intervals_to_fasta.py from 644 to 755 changing mode of build/scripts-3.8/out_to_chain.py from 644 to 755 changing mode of build/scripts-3.8/maf_div_sites.py from 644 to 755 changing mode of build/scripts-3.8/bed_count_by_interval.py from 644 to 755 changing mode of build/scripts-3.8/interval_count_intersections.py from 644 to 755 changing mode of build/scripts-3.8/maf_mask_cpg.py from 644 to 755 changing mode of build/scripts-3.8/int_seqs_to_char_strings.py from 644 to 755 changing mode of build/scripts-3.8/align_print_template.py from 644 to 755 changing mode of build/scripts-3.8/axt_to_lav.py from 644 to 755 changing mode of build/scripts-3.8/bed_merge_overlapping.py from 644 to 755 changing mode of build/scripts-3.8/maf_percent_identity.py from 644 to 755 changing mode of build/scripts-3.8/interval_join.py from 644 to 755 changing mode of build/scripts-3.8/ucsc_gene_table_to_intervals.py from 644 to 755 changing mode of build/scripts-3.8/maf_covered_ranges.py from 644 to 755 changing mode of build/scripts-3.8/pretty_table.py from 644 to 755 changing mode of build/scripts-3.8/nib_length.py from 644 to 755 changing mode of build/scripts-3.8/maf_word_frequency.py from 644 to 755 changing mode of build/scripts-3.8/qv_to_bqv.py from 644 to 755 changing mode of build/scripts-3.8/lzop_build_offset_table.py from 644 to 755 changing mode of build/scripts-3.8/table_filter.py from 644 to 755 changing mode of build/scripts-3.8/find_in_sorted_file.py from 644 to 755 changing mode of build/scripts-3.8/maf_percent_columns_matching.py from 644 to 755 changing mode of build/scripts-3.8/maf_print_scores.py from 644 to 755 changing mode of build/scripts-3.8/bed_build_windows.py from 644 to 755 changing mode of build/scripts-3.8/maf_print_chroms.py from 644 to 755 changing mode of build/scripts-3.8/maf_tile.py from 644 to 755 changing mode of build/scripts-3.8/axt_to_fasta.py from 644 to 755 changing mode of build/scripts-3.8/mask_quality.py from 644 to 755 changing mode of build/scripts-3.8/maf_to_axt.py from 644 to 755 changing mode of build/scripts-3.8/maf_count.py from 644 to 755 changing mode of build/scripts-3.8/one_field_per_line.py from 644 to 755 changing mode of build/scripts-3.8/maf_translate_chars.py from 644 to 755 changing mode of build/scripts-3.8/div_snp_table_chr.py from 644 to 755 changing mode of build/scripts-3.8/gene_fourfold_sites.py from 644 to 755 changing mode of build/scripts-3.8/maf_filter.py from 644 to 755 changing mode of build/scripts-3.8/get_scores_in_intervals.py from 644 to 755 changing mode of build/scripts-3.8/maf_split_by_src.py from 644 to 755 changing mode of build/scripts-3.8/lav_to_axt.py from 644 to 755 changing mode of build/scripts-3.8/maf_shuffle_columns.py from 644 to 755 changing mode of build/scripts-3.8/random_lines.py from 644 to 755 changing mode of build/scripts-3.8/axt_extract_ranges.py from 644 to 755 changing mode of build/scripts-3.8/maf_col_counts.py from 644 to 755 changing mode of build/scripts-3.8/bed_rand_intersect.py from 644 to 755 changing mode of build/scripts-3.8/maf_gap_frequency.py from 644 to 755 changing mode of build/scripts-3.8/maf_to_int_seqs.py from 644 to 755 changing mode of build/scripts-3.8/maf_mean_length_ungapped_piece.py from 644 to 755 changing mode of build/scripts-3.8/prefix_lines.py from 644 to 755 changing mode of build/scripts-3.8/maf_thread_for_species.py from 644 to 755 changing mode of build/scripts-3.8/bed_complement.py from 644 to 755 phase `build' succeeded after 136.7 seconds starting phase `install' running "python setup.py" with command "install" and parameters ("--prefix=/gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2" "--single-version-externally-managed" "--root=/") running install running build running build_py running build_ext skipping 'lib/bx/bitset.c' Cython extension (up-to-date) skipping 'lib/bx/intervals/intersection.c' Cython extension (up-to-date) skipping 'lib/bx/align/_core.c' Cython extension (up-to-date) skipping 'lib/bx/seq/_nib.c' Cython extension (up-to-date) skipping 'lib/bx/seq/_twobit.c' Cython extension (up-to-date) skipping 'lib/bx/_seqmapping.c' Cython extension (up-to-date) skipping 'lib/bx/misc/bgzf.c' Cython extension (up-to-date) skipping 'lib/bx/intervals/cluster.c' Cython extension (up-to-date) skipping 'lib/bx/pwm/_position_weight_matrix.c' Cython extension (up-to-date) skipping 'lib/bx/motif/_pwm.c' Cython extension (up-to-date) skipping 'lib/bx/arrays/array_tree.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bpt_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/cirtree_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bbi_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bigwig_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bigbed_file.c' Cython extension (up-to-date) skipping 'lib/bx/align/_epo.c' Cython extension (up-to-date) skipping 'lib/bx/arrays/bed.c' Cython extension (up-to-date) skipping 'lib/bx/arrays/wiggle.c' Cython extension (up-to-date) skipping 'lib/bx/align/sitemask/_cpg.c' Cython extension (up-to-date) skipping 'lib/bx/intseq/ngramcount.c' Cython extension (up-to-date) skipping 'lib/bx/misc/_seekbzip2.c' Cython extension (up-to-date) running build_scripts running install_lib creating /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2 creating /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib creating /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8 creating /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages creating /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx copying build/lib.linux-i686-3.8/bx/wiggle.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx copying build/lib.linux-i686-3.8/bx/_seqmapping.cpython-38-i386-linux-gnu.so -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx creating /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/bbi copying build/lib.linux-i686-3.8/bx/bbi/bigwig_file.cpython-38-i386-linux-gnu.so -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/bbi copying build/lib.linux-i686-3.8/bx/bbi/bbi_file.cpython-38-i386-linux-gnu.so -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/bbi copying build/lib.linux-i686-3.8/bx/bbi/bigwig_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/bbi copying build/lib.linux-i686-3.8/bx/bbi/bigbed_file.cpython-38-i386-linux-gnu.so -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/bbi copying build/lib.linux-i686-3.8/bx/bbi/bpt_file.cpython-38-i386-linux-gnu.so -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/bbi copying build/lib.linux-i686-3.8/bx/bbi/__init__.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/bbi copying build/lib.linux-i686-3.8/bx/bbi/cirtree_file.cpython-38-i386-linux-gnu.so -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/bbi creating /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/arrays copying build/lib.linux-i686-3.8/bx/arrays/array_tree_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/arrays copying build/lib.linux-i686-3.8/bx/arrays/bed.cpython-38-i386-linux-gnu.so -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/arrays copying build/lib.linux-i686-3.8/bx/arrays/wiggle.cpython-38-i386-linux-gnu.so -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/arrays copying build/lib.linux-i686-3.8/bx/arrays/__init__.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/arrays copying build/lib.linux-i686-3.8/bx/arrays/array_tree.cpython-38-i386-linux-gnu.so -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/arrays copying build/lib.linux-i686-3.8/bx/wiggle_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx copying build/lib.linux-i686-3.8/bx/bitset.cpython-38-i386-linux-gnu.so -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx copying build/lib.linux-i686-3.8/bx/binned_array.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx copying build/lib.linux-i686-3.8/bx/bitset_builders.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx creating /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/phylo copying build/lib.linux-i686-3.8/bx/phylo/phast.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/phylo copying build/lib.linux-i686-3.8/bx/phylo/newick_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/phylo copying build/lib.linux-i686-3.8/bx/phylo/__init__.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/phylo copying build/lib.linux-i686-3.8/bx/phylo/phast_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/phylo copying build/lib.linux-i686-3.8/bx/phylo/newick.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/phylo creating /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/pwm copying build/lib.linux-i686-3.8/bx/pwm/pwm_score_motifs.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/pwm copying build/lib.linux-i686-3.8/bx/pwm/pwm_score_maf.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/pwm copying build/lib.linux-i686-3.8/bx/pwm/bed_score_aligned_string.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/pwm copying build/lib.linux-i686-3.8/bx/pwm/pwm_score_positions.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/pwm copying build/lib.linux-i686-3.8/bx/pwm/maf_select_motifs.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/pwm copying build/lib.linux-i686-3.8/bx/pwm/__init__.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/pwm copying build/lib.linux-i686-3.8/bx/pwm/_position_weight_matrix.cpython-38-i386-linux-gnu.so -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/pwm copying build/lib.linux-i686-3.8/bx/pwm/bed_score_aligned_pwm.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/pwm copying build/lib.linux-i686-3.8/bx/pwm/pwm_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/pwm copying build/lib.linux-i686-3.8/bx/pwm/position_weight_matrix.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/pwm creating /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seq copying build/lib.linux-i686-3.8/bx/seq/twobit.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seq copying build/lib.linux-i686-3.8/bx/seq/core.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seq copying build/lib.linux-i686-3.8/bx/seq/nib.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seq copying build/lib.linux-i686-3.8/bx/seq/fasta_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seq copying build/lib.linux-i686-3.8/bx/seq/twobit_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seq copying build/lib.linux-i686-3.8/bx/seq/nib_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seq copying build/lib.linux-i686-3.8/bx/seq/fasta.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seq copying build/lib.linux-i686-3.8/bx/seq/seq_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seq copying build/lib.linux-i686-3.8/bx/seq/__init__.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seq copying build/lib.linux-i686-3.8/bx/seq/qdna.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seq copying build/lib.linux-i686-3.8/bx/seq/_nib.cpython-38-i386-linux-gnu.so -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seq copying build/lib.linux-i686-3.8/bx/seq/seq.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seq copying build/lib.linux-i686-3.8/bx/seq/qdna_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seq copying build/lib.linux-i686-3.8/bx/seq/_twobit.cpython-38-i386-linux-gnu.so -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seq creating /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/misc copying build/lib.linux-i686-3.8/bx/misc/bgzf.cpython-38-i386-linux-gnu.so -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/misc copying build/lib.linux-i686-3.8/bx/misc/seeklzop_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/misc copying build/lib.linux-i686-3.8/bx/misc/seeklzop.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/misc copying build/lib.linux-i686-3.8/bx/misc/_seekbzip2.cpython-38-i386-linux-gnu.so -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/misc copying build/lib.linux-i686-3.8/bx/misc/cdb_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/misc copying build/lib.linux-i686-3.8/bx/misc/cdb.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/misc copying build/lib.linux-i686-3.8/bx/misc/filecache_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/misc copying build/lib.linux-i686-3.8/bx/misc/__init__.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/misc copying build/lib.linux-i686-3.8/bx/misc/readlengths.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/misc copying build/lib.linux-i686-3.8/bx/misc/bgzf_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/misc copying build/lib.linux-i686-3.8/bx/misc/binary_file.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/misc copying build/lib.linux-i686-3.8/bx/misc/filecache.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/misc copying build/lib.linux-i686-3.8/bx/misc/seekbzip2.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/misc copying build/lib.linux-i686-3.8/bx/misc/seekbzip2_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/misc copying build/lib.linux-i686-3.8/bx/bitset_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx copying build/lib.linux-i686-3.8/bx/seqmapping.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx copying build/lib.linux-i686-3.8/bx/__init__.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx copying build/lib.linux-i686-3.8/bx/filter.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx copying build/lib.linux-i686-3.8/bx/bitset_utils.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx copying build/lib.linux-i686-3.8/bx/interval_index_file.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx creating /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align copying build/lib.linux-i686-3.8/bx/align/maf_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align copying build/lib.linux-i686-3.8/bx/align/core.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align creating /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/sitemask copying build/lib.linux-i686-3.8/bx/align/sitemask/cpg.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/sitemask copying build/lib.linux-i686-3.8/bx/align/sitemask/_cpg.cpython-38-i386-linux-gnu.so -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/sitemask copying build/lib.linux-i686-3.8/bx/align/sitemask/core.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/sitemask copying build/lib.linux-i686-3.8/bx/align/sitemask/quality.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/sitemask copying build/lib.linux-i686-3.8/bx/align/sitemask/sitemask_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/sitemask copying build/lib.linux-i686-3.8/bx/align/sitemask/__init__.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/sitemask creating /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/tools copying build/lib.linux-i686-3.8/bx/align/tools/chop.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/tools copying build/lib.linux-i686-3.8/bx/align/tools/thread.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/tools copying build/lib.linux-i686-3.8/bx/align/tools/fuse.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/tools copying build/lib.linux-i686-3.8/bx/align/tools/tile.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/tools copying build/lib.linux-i686-3.8/bx/align/tools/__init__.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/tools copying build/lib.linux-i686-3.8/bx/align/epo.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align copying build/lib.linux-i686-3.8/bx/align/lav.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align copying build/lib.linux-i686-3.8/bx/align/__init__.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align copying build/lib.linux-i686-3.8/bx/align/maf.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align copying build/lib.linux-i686-3.8/bx/align/score.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align copying build/lib.linux-i686-3.8/bx/align/epo_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align copying build/lib.linux-i686-3.8/bx/align/_epo.cpython-38-i386-linux-gnu.so -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align copying build/lib.linux-i686-3.8/bx/align/score_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align copying build/lib.linux-i686-3.8/bx/align/axt.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align copying build/lib.linux-i686-3.8/bx/align/lav_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align copying build/lib.linux-i686-3.8/bx/align/_core.cpython-38-i386-linux-gnu.so -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align creating /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/cookbook copying build/lib.linux-i686-3.8/bx/cookbook/argparse.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/cookbook copying build/lib.linux-i686-3.8/bx/cookbook/attribute.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/cookbook copying build/lib.linux-i686-3.8/bx/cookbook/progress_bar.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/cookbook copying build/lib.linux-i686-3.8/bx/cookbook/__init__.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/cookbook copying build/lib.linux-i686-3.8/bx/cookbook/doc_optparse.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/cookbook copying build/lib.linux-i686-3.8/bx/interval_index_file_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx copying build/lib.linux-i686-3.8/bx/gene_reader.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx creating /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/tabular copying build/lib.linux-i686-3.8/bx/tabular/io.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/tabular copying build/lib.linux-i686-3.8/bx/tabular/__init__.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/tabular creating /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals copying build/lib.linux-i686-3.8/bx/intervals/intersection.cpython-38-i386-linux-gnu.so -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals copying build/lib.linux-i686-3.8/bx/intervals/random_intervals.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals copying build/lib.linux-i686-3.8/bx/intervals/io.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals copying build/lib.linux-i686-3.8/bx/intervals/intersection_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals copying build/lib.linux-i686-3.8/bx/intervals/__init__.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals copying build/lib.linux-i686-3.8/bx/intervals/cluster.cpython-38-i386-linux-gnu.so -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals copying build/lib.linux-i686-3.8/bx/intervals/cluster_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals creating /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/operations copying build/lib.linux-i686-3.8/bx/intervals/operations/subtract.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/operations copying build/lib.linux-i686-3.8/bx/intervals/operations/complement.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/operations copying build/lib.linux-i686-3.8/bx/intervals/operations/join.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/operations copying build/lib.linux-i686-3.8/bx/intervals/operations/concat.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/operations copying build/lib.linux-i686-3.8/bx/intervals/operations/quicksect.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/operations copying build/lib.linux-i686-3.8/bx/intervals/operations/base_coverage.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/operations copying build/lib.linux-i686-3.8/bx/intervals/operations/__init__.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/operations copying build/lib.linux-i686-3.8/bx/intervals/operations/merge.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/operations copying build/lib.linux-i686-3.8/bx/intervals/operations/coverage.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/operations copying build/lib.linux-i686-3.8/bx/intervals/operations/find_clusters.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/operations copying build/lib.linux-i686-3.8/bx/intervals/operations/intersect.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/operations copying build/lib.linux-i686-3.8/bx/seqmapping_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx creating /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intseq copying build/lib.linux-i686-3.8/bx/intseq/__init__.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intseq copying build/lib.linux-i686-3.8/bx/intseq/ngramcount.cpython-38-i386-linux-gnu.so -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intseq copying build/lib.linux-i686-3.8/bx/binned_array_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx creating /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/motif copying build/lib.linux-i686-3.8/bx/motif/_pwm.cpython-38-i386-linux-gnu.so -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/motif copying build/lib.linux-i686-3.8/bx/motif/__init__.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/motif creating /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/motif/io copying build/lib.linux-i686-3.8/bx/motif/io/transfac_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/motif/io copying build/lib.linux-i686-3.8/bx/motif/io/__init__.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/motif/io copying build/lib.linux-i686-3.8/bx/motif/io/transfac.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/motif/io copying build/lib.linux-i686-3.8/bx/motif/pwm.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/motif copying build/lib.linux-i686-3.8/bx/motif/pwm_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/motif creating /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/motif/logo copying build/lib.linux-i686-3.8/bx/motif/logo/template.ps -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/motif/logo copying build/lib.linux-i686-3.8/bx/motif/logo/__init__.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/motif/logo creating /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx_extras copying build/lib.linux-i686-3.8/bx_extras/lrucache.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx_extras copying build/lib.linux-i686-3.8/bx_extras/pstat.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx_extras copying build/lib.linux-i686-3.8/bx_extras/fpconst_tests.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx_extras copying build/lib.linux-i686-3.8/bx_extras/__init__.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx_extras copying build/lib.linux-i686-3.8/bx_extras/stats.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx_extras copying build/lib.linux-i686-3.8/bx_extras/pyparsing.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx_extras copying build/lib.linux-i686-3.8/bx_extras/fpconst.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx_extras copying build/lib.linux-i686-3.8/psyco_full.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/wiggle.py to wiggle.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/bbi/bigwig_tests.py to bigwig_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/bbi/__init__.py to __init__.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/arrays/array_tree_tests.py to array_tree_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/arrays/__init__.py to __init__.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/wiggle_tests.py to wiggle_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/binned_array.py to binned_array.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/bitset_builders.py to bitset_builders.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/phylo/phast.py to phast.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/phylo/newick_tests.py to newick_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/phylo/__init__.py to __init__.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/phylo/phast_tests.py to phast_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/phylo/newick.py to newick.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/pwm/pwm_score_motifs.py to pwm_score_motifs.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/pwm/pwm_score_maf.py to pwm_score_maf.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/pwm/bed_score_aligned_string.py to bed_score_aligned_string.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/pwm/pwm_score_positions.py to pwm_score_positions.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/pwm/maf_select_motifs.py to maf_select_motifs.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/pwm/__init__.py to __init__.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/pwm/bed_score_aligned_pwm.py to bed_score_aligned_pwm.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/pwm/pwm_tests.py to pwm_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/pwm/position_weight_matrix.py to position_weight_matrix.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seq/twobit.py to twobit.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seq/core.py to core.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seq/nib.py to nib.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seq/fasta_tests.py to fasta_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seq/twobit_tests.py to twobit_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seq/nib_tests.py to nib_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seq/fasta.py to fasta.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seq/seq_tests.py to seq_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seq/__init__.py to __init__.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seq/qdna.py to qdna.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seq/seq.py to seq.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seq/qdna_tests.py to qdna_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/misc/seeklzop_tests.py to seeklzop_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/misc/seeklzop.py to seeklzop.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/misc/cdb_tests.py to cdb_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/misc/cdb.py to cdb.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/misc/filecache_tests.py to filecache_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/misc/__init__.py to __init__.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/misc/readlengths.py to readlengths.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/misc/bgzf_tests.py to bgzf_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/misc/binary_file.py to binary_file.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/misc/filecache.py to filecache.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/misc/seekbzip2.py to seekbzip2.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/misc/seekbzip2_tests.py to seekbzip2_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/bitset_tests.py to bitset_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seqmapping.py to seqmapping.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/__init__.py to __init__.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/filter.py to filter.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/bitset_utils.py to bitset_utils.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/interval_index_file.py to interval_index_file.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/maf_tests.py to maf_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/core.py to core.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/sitemask/cpg.py to cpg.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/sitemask/core.py to core.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/sitemask/quality.py to quality.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/sitemask/sitemask_tests.py to sitemask_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/sitemask/__init__.py to __init__.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/tools/chop.py to chop.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/tools/thread.py to thread.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/tools/fuse.py to fuse.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/tools/tile.py to tile.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/tools/__init__.py to __init__.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/epo.py to epo.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/lav.py to lav.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/__init__.py to __init__.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/maf.py to maf.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/score.py to score.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/epo_tests.py to epo_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/score_tests.py to score_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/axt.py to axt.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/align/lav_tests.py to lav_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/cookbook/argparse.py to argparse.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/cookbook/attribute.py to attribute.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/cookbook/progress_bar.py to progress_bar.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/cookbook/__init__.py to __init__.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/cookbook/doc_optparse.py to doc_optparse.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/interval_index_file_tests.py to interval_index_file_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/gene_reader.py to gene_reader.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/tabular/io.py to io.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/tabular/__init__.py to __init__.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/random_intervals.py to random_intervals.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/io.py to io.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/intersection_tests.py to intersection_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/__init__.py to __init__.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/cluster_tests.py to cluster_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/operations/subtract.py to subtract.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/operations/complement.py to complement.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/operations/join.py to join.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/operations/concat.py to concat.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/operations/quicksect.py to quicksect.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/operations/base_coverage.py to base_coverage.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/operations/__init__.py to __init__.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/operations/merge.py to merge.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/operations/coverage.py to coverage.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/operations/find_clusters.py to find_clusters.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intervals/operations/intersect.py to intersect.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/seqmapping_tests.py to seqmapping_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/intseq/__init__.py to __init__.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/binned_array_tests.py to binned_array_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/motif/__init__.py to __init__.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/motif/io/transfac_tests.py to transfac_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/motif/io/__init__.py to __init__.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/motif/io/transfac.py to transfac.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/motif/pwm.py to pwm.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/motif/pwm_tests.py to pwm_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx/motif/logo/__init__.py to __init__.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx_extras/lrucache.py to lrucache.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx_extras/pstat.py to pstat.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx_extras/fpconst_tests.py to fpconst_tests.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx_extras/__init__.py to __init__.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx_extras/stats.py to stats.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx_extras/pyparsing.py to pyparsing.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx_extras/fpconst.py to fpconst.cpython-38.pyc byte-compiling /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/psyco_full.py to psyco_full.cpython-38.pyc running install_egg_info running egg_info writing lib/bx_python.egg-info/PKG-INFO writing dependency_links to lib/bx_python.egg-info/dependency_links.txt writing requirements to lib/bx_python.egg-info/requires.txt writing top-level names to lib/bx_python.egg-info/top_level.txt reading manifest file 'lib/bx_python.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'distribute_setup.py' writing manifest file 'lib/bx_python.egg-info/SOURCES.txt' Copying lib/bx_python.egg-info to /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib/python3.8/site-packages/bx_python-0.8.2-py3.8.egg-info running install_scripts creating /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_filter_max_wc.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_mapping_word_frequency.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/table_add_column.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/nib_intervals_to_fasta.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/mMK_bitset.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_limit_to_species.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/tfloc_summary.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/bed_coverage_by_interval.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_tile_2bit.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_covered_regions.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/lav_to_maf.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_region_coverage_by_src.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/bed_bigwig_profile.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/line_select.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/wiggle_to_simple.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/wiggle_to_array_tree.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/wiggle_to_chr_binned_array.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_randomize.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_chunk.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_build_index.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_truncate.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/bnMapper.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/wiggle_to_binned_array.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_tile_2.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/bed_extend_to.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_to_fasta.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/bed_diff_basewise_summary.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/bed_intersect_basewise.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/bed_count_overlapping.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/bed_subtract_basewise.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_drop_overlapping.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_col_counts_all.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_to_concat_fasta.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_extract_ranges_indexed.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_interval_alignibility.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_species_in_all_files.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/axt_to_maf.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/bed_intersect.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/bed_coverage.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_extract_chrom_ranges.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_chop.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_select.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_extract_ranges.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/aggregate_scores_in_intervals.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_gc_content.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/nib_chrom_intervals_to_fasta.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/out_to_chain.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_div_sites.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/bed_count_by_interval.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/interval_count_intersections.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_mask_cpg.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/int_seqs_to_char_strings.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/align_print_template.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/axt_to_lav.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/bed_merge_overlapping.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_percent_identity.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/interval_join.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/ucsc_gene_table_to_intervals.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_covered_ranges.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/pretty_table.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/nib_length.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_word_frequency.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/qv_to_bqv.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/lzop_build_offset_table.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/table_filter.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/find_in_sorted_file.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_percent_columns_matching.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_print_scores.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/bed_build_windows.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_print_chroms.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_tile.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/axt_to_fasta.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/mask_quality.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_to_axt.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_count.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/one_field_per_line.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_translate_chars.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/div_snp_table_chr.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/gene_fourfold_sites.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_filter.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/get_scores_in_intervals.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_split_by_src.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/lav_to_axt.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_shuffle_columns.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/random_lines.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/axt_extract_ranges.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_col_counts.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/bed_rand_intersect.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_gap_frequency.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_to_int_seqs.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_mean_length_ungapped_piece.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/prefix_lines.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/maf_thread_for_species.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin copying build/scripts-3.8/bed_complement.py -> /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_filter_max_wc.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_mapping_word_frequency.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/table_add_column.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/nib_intervals_to_fasta.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/mMK_bitset.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_limit_to_species.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/tfloc_summary.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/bed_coverage_by_interval.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_tile_2bit.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_covered_regions.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/lav_to_maf.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_region_coverage_by_src.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/bed_bigwig_profile.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/line_select.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/wiggle_to_simple.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/wiggle_to_array_tree.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/wiggle_to_chr_binned_array.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_randomize.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_chunk.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_build_index.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_truncate.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/bnMapper.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/wiggle_to_binned_array.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_tile_2.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/bed_extend_to.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_to_fasta.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/bed_diff_basewise_summary.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/bed_intersect_basewise.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/bed_count_overlapping.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/bed_subtract_basewise.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_drop_overlapping.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_col_counts_all.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_to_concat_fasta.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_extract_ranges_indexed.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_interval_alignibility.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_species_in_all_files.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/axt_to_maf.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/bed_intersect.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/bed_coverage.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_extract_chrom_ranges.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_chop.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_select.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_extract_ranges.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/aggregate_scores_in_intervals.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_gc_content.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/nib_chrom_intervals_to_fasta.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/out_to_chain.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_div_sites.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/bed_count_by_interval.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/interval_count_intersections.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_mask_cpg.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/int_seqs_to_char_strings.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/align_print_template.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/axt_to_lav.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/bed_merge_overlapping.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_percent_identity.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/interval_join.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/ucsc_gene_table_to_intervals.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_covered_ranges.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/pretty_table.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/nib_length.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_word_frequency.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/qv_to_bqv.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/lzop_build_offset_table.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/table_filter.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/find_in_sorted_file.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_percent_columns_matching.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_print_scores.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/bed_build_windows.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_print_chroms.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_tile.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/axt_to_fasta.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/mask_quality.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_to_axt.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_count.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/one_field_per_line.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_translate_chars.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/div_snp_table_chr.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/gene_fourfold_sites.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_filter.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/get_scores_in_intervals.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_split_by_src.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/lav_to_axt.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_shuffle_columns.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/random_lines.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/axt_extract_ranges.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_col_counts.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/bed_rand_intersect.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_gap_frequency.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_to_int_seqs.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_mean_length_ungapped_piece.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/prefix_lines.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/maf_thread_for_species.py to 755 changing mode of /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin/bed_complement.py to 755 phase `install' succeeded after 1.6 seconds starting phase `wrap' find-files: /gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/sbin: No such file or directory phase `wrap' succeeded after 0.2 seconds starting phase `check' test suite not run phase `check' succeeded after 0.0 seconds starting phase `patch-shebangs' phase `patch-shebangs' succeeded after 0.1 seconds starting phase `rename-pth-file' phase `rename-pth-file' succeeded after 0.0 seconds starting phase `strip' stripping binaries in "/gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib" with "strip" and flags ("--strip-debug" "--enable-deterministic-archives") stripping binaries in "/gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin" with "strip" and flags ("--strip-debug" "--enable-deterministic-archives") phase `strip' succeeded after 0.3 seconds starting phase `validate-runpath' validating RUNPATH of 22 binaries in "/gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/lib"... validating RUNPATH of 0 binaries in "/gnu/store/iblwalmscklsp4jvgvppclc6sbr0ijyl-python-bx-python-0.8.2/bin"... phase `validate-runpath' succeeded after 0.1 seconds starting phase `validate-documentation-location' phase `validate-documentation-location' succeeded after 0.0 seconds starting phase `delete-info-dir-file' phase `delete-info-dir-file' succeeded after 0.0 seconds starting phase `patch-dot-desktop-files' phase `patch-dot-desktop-files' succeeded after 0.0 seconds starting phase `install-license-files' installing 1 license files from '.' phase `install-license-files' succeeded after 0.0 seconds starting phase `reset-gzip-timestamps' phase `reset-gzip-timestamps' succeeded after 0.0 seconds starting phase `compress-documentation' phase `compress-documentation' succeeded after 0.0 seconds