WARNING: (guile-user): imported module (guix build utils) overrides core binding `delete' starting phase `set-SOURCE-DATE-EPOCH' phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds starting phase `set-paths' environment variable `PATH' set to `/gnu/store/vzcww4k9bky7gv8mx2br8yjrn23wwc9l-gcc-cross-x86_64-w64-mingw32-11.3.0/bin:/gnu/store/4pj0fxximsnzs6byl9c612nvlc6r4ria-binutils-cross-x86_64-w64-mingw32-2.38/bin:/gnu/store/sxx22f98vfbavcqmdksm6as8fvskpxiw-tar-1.34/bin:/gnu/store/x24bm49ag5dvki72mjdz195bfb89nrnb-gzip-1.12/bin:/gnu/store/j8wlfmlmfvpbza6is9wv9xsd8psrxn00-bzip2-1.0.8/bin:/gnu/store/gr0sy0m1mv36qv54idm6cn10l3mngshq-file-5.44/bin:/gnu/store/zmcf5kpqiighkbh7wslf91qdjwj06yr1-diffutils-3.8/bin:/gnu/store/210yfax18r2g2inxrml9435ikhfcca6m-patch-2.7.6/bin:/gnu/store/c8jyph2lxw0m9na34fg8h70n4nnnz7is-findutils-4.9.0/bin:/gnu/store/hc05d76f1j3iz3v2bs5jz4fpljl1r4dj-gawk-5.2.1/bin:/gnu/store/xxcfsimvxz7z4dj593gnqbkzc6picwzq-sed-4.8/bin:/gnu/store/yrv5f70mn83a876b78i5s79dd2hsh0zf-grep-3.8/bin:/gnu/store/6k1yys9wqrfn4y41ic1win8gpnimncwj-xz-5.2.8/bin:/gnu/store/a5i8avx826brw5grn3n4qv40g514505c-coreutils-9.1/bin:/gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/bin:/gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin:/gnu/store/na1dpbbcxjaa3n8wkwrfpch476f90hlf-ld-wrapper-0/bin:/gnu/store/zh4x65snfis7svs6906gj1z8i7dx2j3m-binutils-2.38/bin:/gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/bin:/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/bin:/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/sbin' environment variable `CROSS_LIBRARY_PATH' set to `/gnu/store/hwnphx53gk3ifrffag7l3bhkf6wczmv4-mingw-w64-x86_64-10.0.0/lib' environment variable `CROSS_C_INCLUDE_PATH' set to `/gnu/store/vzcww4k9bky7gv8mx2br8yjrn23wwc9l-gcc-cross-x86_64-w64-mingw32-11.3.0/include:/gnu/store/hwnphx53gk3ifrffag7l3bhkf6wczmv4-mingw-w64-x86_64-10.0.0/include' environment variable `CROSS_CPLUS_INCLUDE_PATH' set to `/gnu/store/vzcww4k9bky7gv8mx2br8yjrn23wwc9l-gcc-cross-x86_64-w64-mingw32-11.3.0/include/c++:/gnu/store/vzcww4k9bky7gv8mx2br8yjrn23wwc9l-gcc-cross-x86_64-w64-mingw32-11.3.0/include:/gnu/store/hwnphx53gk3ifrffag7l3bhkf6wczmv4-mingw-w64-x86_64-10.0.0/include' environment variable `CROSS_OBJC_INCLUDE_PATH' set to `/gnu/store/vzcww4k9bky7gv8mx2br8yjrn23wwc9l-gcc-cross-x86_64-w64-mingw32-11.3.0/include:/gnu/store/hwnphx53gk3ifrffag7l3bhkf6wczmv4-mingw-w64-x86_64-10.0.0/include' environment variable `CROSS_OBJCPLUS_INCLUDE_PATH' set to `/gnu/store/vzcww4k9bky7gv8mx2br8yjrn23wwc9l-gcc-cross-x86_64-w64-mingw32-11.3.0/include:/gnu/store/hwnphx53gk3ifrffag7l3bhkf6wczmv4-mingw-w64-x86_64-10.0.0/include' environment variable `CROSS_C_INCLUDE_PATH' set to `/gnu/store/vzcww4k9bky7gv8mx2br8yjrn23wwc9l-gcc-cross-x86_64-w64-mingw32-11.3.0/include:/gnu/store/hwnphx53gk3ifrffag7l3bhkf6wczmv4-mingw-w64-x86_64-10.0.0/include' environment variable `CROSS_LIBRARY_PATH' set to `/gnu/store/hwnphx53gk3ifrffag7l3bhkf6wczmv4-mingw-w64-x86_64-10.0.0/lib' environment variable `BASH_LOADABLES_PATH' unset environment variable `C_INCLUDE_PATH' set to `/gnu/store/vzcww4k9bky7gv8mx2br8yjrn23wwc9l-gcc-cross-x86_64-w64-mingw32-11.3.0/include:/gnu/store/4pj0fxximsnzs6byl9c612nvlc6r4ria-binutils-cross-x86_64-w64-mingw32-2.38/include:/gnu/store/j8wlfmlmfvpbza6is9wv9xsd8psrxn00-bzip2-1.0.8/include:/gnu/store/gr0sy0m1mv36qv54idm6cn10l3mngshq-file-5.44/include:/gnu/store/hc05d76f1j3iz3v2bs5jz4fpljl1r4dj-gawk-5.2.1/include:/gnu/store/6k1yys9wqrfn4y41ic1win8gpnimncwj-xz-5.2.8/include:/gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/include:/gnu/store/zh4x65snfis7svs6906gj1z8i7dx2j3m-binutils-2.38/include:/gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include:/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/include:/gnu/store/5iklcps70c0sfkxvlrhg8jhf3q4h18bj-linux-libre-headers-5.15.49/include' environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/vzcww4k9bky7gv8mx2br8yjrn23wwc9l-gcc-cross-x86_64-w64-mingw32-11.3.0/include/c++:/gnu/store/vzcww4k9bky7gv8mx2br8yjrn23wwc9l-gcc-cross-x86_64-w64-mingw32-11.3.0/include:/gnu/store/4pj0fxximsnzs6byl9c612nvlc6r4ria-binutils-cross-x86_64-w64-mingw32-2.38/include:/gnu/store/j8wlfmlmfvpbza6is9wv9xsd8psrxn00-bzip2-1.0.8/include:/gnu/store/gr0sy0m1mv36qv54idm6cn10l3mngshq-file-5.44/include:/gnu/store/hc05d76f1j3iz3v2bs5jz4fpljl1r4dj-gawk-5.2.1/include:/gnu/store/6k1yys9wqrfn4y41ic1win8gpnimncwj-xz-5.2.8/include:/gnu/store/wj7casda7rb55rvqjnpm0bm7a2zm6618-make-4.3/include:/gnu/store/zh4x65snfis7svs6906gj1z8i7dx2j3m-binutils-2.38/include:/gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include/c++:/gnu/store/5lqhcv91ijy82p92ac6g5xw48l0lwwz4-gcc-11.3.0/include:/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/include:/gnu/store/5iklcps70c0sfkxvlrhg8jhf3q4h18bj-linux-libre-headers-5.15.49/include' environment variable `LIBRARY_PATH' set to `/gnu/store/4pj0fxximsnzs6byl9c612nvlc6r4ria-binutils-cross-x86_64-w64-mingw32-2.38/lib:/gnu/store/j8wlfmlmfvpbza6is9wv9xsd8psrxn00-bzip2-1.0.8/lib:/gnu/store/gr0sy0m1mv36qv54idm6cn10l3mngshq-file-5.44/lib:/gnu/store/hc05d76f1j3iz3v2bs5jz4fpljl1r4dj-gawk-5.2.1/lib:/gnu/store/6k1yys9wqrfn4y41ic1win8gpnimncwj-xz-5.2.8/lib:/gnu/store/zh4x65snfis7svs6906gj1z8i7dx2j3m-binutils-2.38/lib:/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/lib:/gnu/store/l0yryi5jsa1grnvw01c9nkz9c81cv224-glibc-2.35-static/lib:/gnu/store/visfdda934gvivwihwhlm63fdqhhcc8a-glibc-utf8-locales-2.35/lib' environment variable `GUIX_LOCPATH' set to `/gnu/store/visfdda934gvivwihwhlm63fdqhhcc8a-glibc-utf8-locales-2.35/lib/locale' phase `set-paths' succeeded after 0.0 seconds starting phase `install-locale' using 'en_US.utf8' locale for category "LC_ALL" phase `install-locale' succeeded after 0.0 seconds starting phase `unpack' `/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/.gitignore' -> `./.gitignore' `/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/BandedSmithWaterman.cpp' -> `./BandedSmithWaterman.cpp' `/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/BandedSmithWaterman.h' -> `./BandedSmithWaterman.h' `/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/IndelAllele.cpp' -> `./IndelAllele.cpp' `/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/IndelAllele.h' -> `./IndelAllele.h' `/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/LICENSE' -> `./LICENSE' `/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/LeftAlign.cpp' -> `./LeftAlign.cpp' `/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/LeftAlign.h' -> `./LeftAlign.h' `/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/Makefile' -> `./Makefile' `/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/Mosaik.h' -> `./Mosaik.h' `/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/Repeats.cpp' -> `./Repeats.cpp' `/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/Repeats.h' -> `./Repeats.h' `/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/SWMain.cpp' -> `./SWMain.cpp' `/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/SmithWatermanGotoh.cpp' -> `./SmithWatermanGotoh.cpp' `/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/SmithWatermanGotoh.h' -> `./SmithWatermanGotoh.h' `/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/convert.h' -> `./convert.h' `/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/disorder.cpp' -> `./disorder.cpp' `/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/disorder.h' -> `./disorder.h' `/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/examples.txt' -> `./examples.txt' `/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/libdisorder.LICENSE' -> `./libdisorder.LICENSE' `/gnu/store/49q0kn8phfvld9g6cb6jbq0f41y7515k-smithwaterman-0.0.0-2.2610e25-checkout/smithwaterman.cpp' -> `./smithwaterman.cpp' phase `unpack' succeeded after 0.0 seconds starting phase `patch-source' phase `patch-source' succeeded after 0.0 seconds starting phase `bootstrap' no 'configure.ac' or anything like that, doing nothing phase `bootstrap' succeeded after 0.0 seconds starting phase `patch-usr-bin-file' phase `patch-usr-bin-file' succeeded after 0.0 seconds starting phase `patch-source-shebangs' phase `patch-source-shebangs' succeeded after 0.0 seconds starting phase `patch-generated-file-shebangs' phase `patch-generated-file-shebangs' succeeded after 0.0 seconds starting phase `build' x86_64-w64-mingw32-g++ -O3 -c -fPIC -o disorder.o disorder.cpp -I. x86_64-w64-mingw32-g++ -O3 -c -fPIC -o BandedSmithWaterman.o BandedSmithWaterman.cpp -I. x86_64-w64-mingw32-g++ -O3 -c -fPIC -o LeftAlign.o LeftAlign.cpp -I. x86_64-w64-mingw32-g++ -O3 -c -fPIC -o Repeats.o Repeats.cpp -I. x86_64-w64-mingw32-g++ -O3 -c -fPIC -o IndelAllele.o IndelAllele.cpp -I. x86_64-w64-mingw32-g++ -O3 -c -fPIC -o smithwaterman.o smithwaterman.cpp -I. x86_64-w64-mingw32-g++ -O3 -c -fPIC -o SmithWatermanGotoh.o SmithWatermanGotoh.cpp -I. x86_64-w64-mingw32-ar rs libsw.a smithwaterman.o SmithWatermanGotoh.o disorder.o BandedSmithWaterman.o LeftAlign.o Repeats.o IndelAllele.o x86_64-w64-mingw32-g++ smithwaterman.o BandedSmithWaterman.o SmithWatermanGotoh.o disorder.o LeftAlign.o Repeats.o IndelAllele.o -I. -o smithwaterman x86_64-w64-mingw32-ld -r BandedSmithWaterman.o SmithWatermanGotoh.o LeftAlign.o Repeats.o IndelAllele.o disorder.o -o sw.o -L. x86_64-w64-mingw32-ar: creating libsw.a #x86_64-w64-mingw32-g++ -c -fPIC -o smithwaterman.cpp disorder.o BandedSmithWaterman.o SmithWatermanGotoh.o Repeats.o LeftAlign.o IndelAllele.o -I. phase `build' succeeded after 4.2 seconds starting phase `build-dynamic' phase `build-dynamic' succeeded after 0.1 seconds starting phase `check' test suite not run phase `check' succeeded after 0.0 seconds starting phase `install' error: in phase 'install': uncaught exception: system-error "copy-file" "~A" ("No such file or directory") (2) phase `install' failed after 0.0 seconds Backtrace: 9 (primitive-load "/gnu/store/rmhw5kldaz7dsmzghin9qf5zhn8…") In guix/build/gnu-build-system.scm: 908:2 8 (gnu-build #:source _ #:outputs _ #:inputs _ #:phases . #) In ice-9/boot-9.scm: 1752:10 7 (with-exception-handler _ _ #:unwind? _ # _) In srfi/srfi-1.scm: 634:9 6 (for-each # …) In ice-9/boot-9.scm: 1752:10 5 (with-exception-handler _ _ #:unwind? _ # _) In guix/build/gnu-build-system.scm: 929:23 4 (_) In ice-9/eval.scm: 619:8 3 (_ #(#(#(#(#(#) …) …) …) …)) In unknown file: 2 (copy-file "smithwaterman" "/gnu/store/j25dbzwrqq4bfxm0…") In ice-9/boot-9.scm: 1685:16 1 (raise-exception _ #:continuable? _) 1685:16 0 (raise-exception _ #:continuable? _) ice-9/boot-9.scm:1685:16: In procedure raise-exception: In procedure copy-file: No such file or directory