starting phase `separate-from-pid1'
build process now running as PID 18
phase `separate-from-pid1' succeeded after 0.0 seconds
starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/271j3n302pz5dnrbs9ymp4hp295z22mq-r-minimal-4.5.2/bin:/gnu/store/x5nk7jclncdrrsjhpmjjfl2z9p36bxyw-tar-1.35/bin:/gnu/store/vcmbby8alqahhhd5qnidpf5pbvr102jl-gzip-1.14/bin:/gnu/store/j2bib9ysq7f3369gjg6hv1kp24g07472-bzip2-1.0.8/bin:/gnu/store/plifc9akxxfyjjbnh10dj350nxbhc399-file-5.46/bin:/gnu/store/d7q1jypzi0hjx0gf2034yzljvapy7fvy-diffutils-3.12/bin:/gnu/store/3yky2jh15qsknnxnzplhj4by14sqmfig-patch-2.7.6/bin:/gnu/store/nfs39m8hsbx905q5kgjiw1irfrllkk00-findutils-4.10.0/bin:/gnu/store/xmqvvby6vlmhbi3q913ck5marh6p86av-gawk-5.3.0/bin:/gnu/store/d4bzgx28m0640plahv0x3h5hxlh1npnj-zstd-1.5.6/bin:/gnu/store/5a3p82yj9nrj6rhk11f7b2sb84wirc2k-sed-4.9/bin:/gnu/store/1lkl6hik16bbhpjjsl825fivp2dsr9vi-grep-3.11/bin:/gnu/store/gd41pn8r5723cyd6d79q9riqjbi070zz-xz-5.4.5/bin:/gnu/store/pai3hvsiihllqi03b2198qi5qq9a28ga-coreutils-9.1/bin:/gnu/store/jkxm9drwlxkmb53zn1sd7w2wxdvpbj32-make-4.4.1/bin:/gnu/store/k66i68s5l93n1lgxp29vn2292nsywp1v-bash-minimal-5.2.37/bin:/gnu/store/pazcfyngzb35khc8ad33dmsb22ibnl80-ld-wrapper-0/bin:/gnu/store/c8mp7qq5az7cbnvmxgj2bjkscsf5h9ri-binutils-2.44/bin:/gnu/store/wssvk5s5akbx78kx92bdkirrry87jvbj-gcc-14.3.0/bin:/gnu/store/yj053cys0724p7vs9kir808x7fivz17m-glibc-2.41/bin:/gnu/store/yj053cys0724p7vs9kir808x7fivz17m-glibc-2.41/sbin'
environment variable `R_LIBS_SITE' set to `/gnu/store/dy9maqhz2j30sxlqyfzmcdip5b8affic-r-annotationdbi-1.72.0/site-library/:/gnu/store/y3aaf0ma5d5l71ql3wl6dsn3c4y107aa-r-s4vectors-0.48.0/site-library/:/gnu/store/8ihihn4kaw5m4smkw05fl2xpgw6a7gya-r-rsqlite-2.4.4/site-library/:/gnu/store/wf6j3xivhbl8ly9inrwj0ra7zqwjmdcx-r-keggrest-1.50.0/site-library/:/gnu/store/2q4bwl05zivrhr4n8vfia9pya2nsl9cn-r-iranges-2.44.0/site-library/:/gnu/store/0mb31xzvcryg597day75ka5f2wffc6xg-r-dbi-1.2.3/site-library/:/gnu/store/sdj5l6nsmryiny677np532xgrglcdnyv-r-biocgenerics-0.56.0/site-library/:/gnu/store/xjw20radl1iq2i3vpsbp0q5gljb4wx0c-r-biobase-2.70.0/site-library/:/gnu/store/q83z93pn0nzi4agvdk6jdaihw1vdi773-r-rlang-1.1.6/site-library/:/gnu/store/lci33l959c09zsvizx8qlp0is9cbqk3n-r-plogr-0.2.0/site-library/:/gnu/store/n7lrqyp0svg4ym01sa5cnh4al7y24z3y-r-pkgconfig-2.0.3/site-library/:/gnu/store/pc957f56k611yjzbzn882g2zx1kf219j-r-memoise-2.0.1/site-library/:/gnu/store/7fg0wz6990m8bkyr9si3d7wfd0dhbqmg-r-cpp11-0.5.2/site-library/:/gnu/store/wdrbr9psr4gh43h4fnh672cpll5wgyaq-r-blob-1.2.4/site-library/:/gnu/store/qm2j3b1kbsx0dwiahnn3vgvniakgrs8w-r-bit64-4.6.0-1/site-library/:/gnu/store/m16jwklcpybccdrgnl6aqd5smdnkyx20-r-png-0.1-8/site-library/:/gnu/store/7p4mw408c5lxyrh8d0mlk5hm3q0jzisg-r-httr-1.4.7/site-library/:/gnu/store/svk0zr906zgz6js1908kv5rmsw7rwlv5-r-biostrings-2.78.0/site-library/:/gnu/store/w00jbinxgx5v7z5613wny9fgq018is2n-r-generics-0.1.4/site-library/:/gnu/store/6sxg655grm5wgf4zzdaiq0073b2aisbl-r-cachem-1.1.0/site-library/:/gnu/store/0bksakw9zj510isa7rp33hd72fh0g8nk-r-vctrs-0.6.5/site-library/:/gnu/store/kayf9ksnfkpmvp24ghm015xa6ihym1bm-r-bit-4.6.0/site-library/:/gnu/store/vlkp9qwd7k1jnzz34848h655m8ckx5f3-r-r6-2.6.1/site-library/:/gnu/store/2wlxc14l1bjgikbym0qs5vxf8lm07rxi-r-openssl-2.3.4/site-library/:/gnu/store/hpjmzyj8kad6ajvdxyhvrfw3ap7y48vp-r-mime-0.13/site-library/:/gnu/store/v775nkpib6sbz3q59yshrby71c5ykcp8-r-jsonlite-2.0.0/site-library/:/gnu/store/g9bxak7xss794pds4qfpafyfcn0cf53g-r-curl-7.0.0/site-library/:/gnu/store/7kh1ffj8f7ny25zl8g0rjn7j753syqs2-r-xvector-0.50.0/site-library/:/gnu/store/vgqm5vzr9hrbbxyky2f0icnvb0yxng23-r-seqinfo-1.0.0/site-library/:/gnu/store/k47c8nw7vi5m46v1kg7sjrvljji05svm-r-crayon-1.5.3/site-library/:/gnu/store/rrawyx478p0bblrvfwgb5aqcg21nh29j-r-fastmap-1.2.0/site-library/:/gnu/store/2jm7igf1lhycvxmng0cf6ay06vh0f2ap-r-lifecycle-1.0.4/site-library/:/gnu/store/7k1d6dvd3634glwvargf1aa80brnyipr-r-glue-1.8.0/site-library/:/gnu/store/3vl9ljw22y3w64wf4vgm3z0a6kgr3x0v-r-cli-3.6.5/site-library/:/gnu/store/9gjbar7i1gw3jnmj775rik6dx6bqd1ax-r-askpass-1.2.1/site-library/:/gnu/store/7nwjxzbxpchxf4495z6s61jwq2a4j54w-r-sys-3.4.3/site-library/'
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/j2bib9ysq7f3369gjg6hv1kp24g07472-bzip2-1.0.8/include:/gnu/store/plifc9akxxfyjjbnh10dj350nxbhc399-file-5.46/include:/gnu/store/xmqvvby6vlmhbi3q913ck5marh6p86av-gawk-5.3.0/include:/gnu/store/gd41pn8r5723cyd6d79q9riqjbi070zz-xz-5.4.5/include:/gnu/store/jkxm9drwlxkmb53zn1sd7w2wxdvpbj32-make-4.4.1/include:/gnu/store/c8mp7qq5az7cbnvmxgj2bjkscsf5h9ri-binutils-2.44/include:/gnu/store/wssvk5s5akbx78kx92bdkirrry87jvbj-gcc-14.3.0/include:/gnu/store/yj053cys0724p7vs9kir808x7fivz17m-glibc-2.41/include:/gnu/store/90qwxdmdw7jdf0dkkgdgxln6b5a57kzx-linux-libre-headers-6.12.17/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/j2bib9ysq7f3369gjg6hv1kp24g07472-bzip2-1.0.8/include:/gnu/store/plifc9akxxfyjjbnh10dj350nxbhc399-file-5.46/include:/gnu/store/xmqvvby6vlmhbi3q913ck5marh6p86av-gawk-5.3.0/include:/gnu/store/gd41pn8r5723cyd6d79q9riqjbi070zz-xz-5.4.5/include:/gnu/store/jkxm9drwlxkmb53zn1sd7w2wxdvpbj32-make-4.4.1/include:/gnu/store/c8mp7qq5az7cbnvmxgj2bjkscsf5h9ri-binutils-2.44/include:/gnu/store/wssvk5s5akbx78kx92bdkirrry87jvbj-gcc-14.3.0/include/c++:/gnu/store/wssvk5s5akbx78kx92bdkirrry87jvbj-gcc-14.3.0/include:/gnu/store/yj053cys0724p7vs9kir808x7fivz17m-glibc-2.41/include:/gnu/store/90qwxdmdw7jdf0dkkgdgxln6b5a57kzx-linux-libre-headers-6.12.17/include'
environment variable `OBJC_INCLUDE_PATH' set to `/gnu/store/j2bib9ysq7f3369gjg6hv1kp24g07472-bzip2-1.0.8/include:/gnu/store/plifc9akxxfyjjbnh10dj350nxbhc399-file-5.46/include:/gnu/store/xmqvvby6vlmhbi3q913ck5marh6p86av-gawk-5.3.0/include:/gnu/store/gd41pn8r5723cyd6d79q9riqjbi070zz-xz-5.4.5/include:/gnu/store/jkxm9drwlxkmb53zn1sd7w2wxdvpbj32-make-4.4.1/include:/gnu/store/c8mp7qq5az7cbnvmxgj2bjkscsf5h9ri-binutils-2.44/include:/gnu/store/wssvk5s5akbx78kx92bdkirrry87jvbj-gcc-14.3.0/include:/gnu/store/yj053cys0724p7vs9kir808x7fivz17m-glibc-2.41/include:/gnu/store/90qwxdmdw7jdf0dkkgdgxln6b5a57kzx-linux-libre-headers-6.12.17/include'
environment variable `OBJCPLUS_INCLUDE_PATH' set to `/gnu/store/j2bib9ysq7f3369gjg6hv1kp24g07472-bzip2-1.0.8/include:/gnu/store/plifc9akxxfyjjbnh10dj350nxbhc399-file-5.46/include:/gnu/store/xmqvvby6vlmhbi3q913ck5marh6p86av-gawk-5.3.0/include:/gnu/store/gd41pn8r5723cyd6d79q9riqjbi070zz-xz-5.4.5/include:/gnu/store/jkxm9drwlxkmb53zn1sd7w2wxdvpbj32-make-4.4.1/include:/gnu/store/c8mp7qq5az7cbnvmxgj2bjkscsf5h9ri-binutils-2.44/include:/gnu/store/wssvk5s5akbx78kx92bdkirrry87jvbj-gcc-14.3.0/include/c++:/gnu/store/wssvk5s5akbx78kx92bdkirrry87jvbj-gcc-14.3.0/include:/gnu/store/yj053cys0724p7vs9kir808x7fivz17m-glibc-2.41/include:/gnu/store/90qwxdmdw7jdf0dkkgdgxln6b5a57kzx-linux-libre-headers-6.12.17/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/271j3n302pz5dnrbs9ymp4hp295z22mq-r-minimal-4.5.2/lib:/gnu/store/j2bib9ysq7f3369gjg6hv1kp24g07472-bzip2-1.0.8/lib:/gnu/store/plifc9akxxfyjjbnh10dj350nxbhc399-file-5.46/lib:/gnu/store/xmqvvby6vlmhbi3q913ck5marh6p86av-gawk-5.3.0/lib:/gnu/store/gd41pn8r5723cyd6d79q9riqjbi070zz-xz-5.4.5/lib:/gnu/store/c8mp7qq5az7cbnvmxgj2bjkscsf5h9ri-binutils-2.44/lib:/gnu/store/yj053cys0724p7vs9kir808x7fivz17m-glibc-2.41/lib:/gnu/store/q1s19kv8bdq9ssfdgznzgkmfmj90vdfd-glibc-2.41-static/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/yj053cys0724p7vs9kir808x7fivz17m-glibc-2.41/lib/locale'
environment variable `TZDIR' unset
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'C.UTF-8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
reactome.db/DESCRIPTION
reactome.db/NAMESPACE
reactome.db/R/
reactome.db/R/zzz.R
reactome.db/inst/
reactome.db/inst/NEWS
reactome.db/inst/extdata/
reactome.db/inst/extdata/DBschemas/
reactome.db/inst/extdata/DBschemas/schemas_94/
reactome.db/inst/extdata/DBschemas/schemas_94/REACTOME_DB.sql
reactome.db/inst/extdata/reactome.sqlite
reactome.db/man/
reactome.db/man/reactome.Rd
reactome.db/man/reactomeEXTID2PATHID.Rd
reactome.db/man/reactomeGO2REACTOMEID.Rd
reactome.db/man/reactomeMAPCOUNTS.Rd
reactome.db/man/reactomePATHID2EXTID.Rd
reactome.db/man/reactomePATHID2NAME.Rd
reactome.db/man/reactomePATHNAME2ID.Rd
reactome.db/man/reactomeREACTOMEID2GO.Rd
reactome.db/man/reactome_dbconn.Rd
phase `unpack' succeeded after 4.6 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
phase `patch-source-shebangs' succeeded after 0.0 seconds
starting phase `patch-generated-file-shebangs'
phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `install'
* installing *source* package ‘reactome.db’ ...
** this is package ‘reactome.db’ version ‘1.94.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (reactome.db)
phase `install' succeeded after 16.5 seconds
starting phase `check'
phase `check' succeeded after 0.0 seconds
starting phase `patch-shebangs'
phase `patch-shebangs' succeeded after 0.0 seconds
starting phase `strip'
phase `strip' succeeded after 0.0 seconds
starting phase `validate-runpath'
phase `validate-runpath' succeeded after 0.0 seconds
starting phase `validate-documentation-location'
phase `validate-documentation-location' succeeded after 0.0 seconds
starting phase `delete-info-dir-file'
phase `delete-info-dir-file' succeeded after 0.0 seconds
starting phase `patch-dot-desktop-files'
phase `patch-dot-desktop-files' succeeded after 0.0 seconds
starting phase `make-dynamic-linker-cache'
phase `make-dynamic-linker-cache' succeeded after 0.0 seconds
starting phase `install-license-files'
installing 0 license files from '.'
phase `install-license-files' succeeded after 0.0 seconds
starting phase `reset-gzip-timestamps'
phase `reset-gzip-timestamps' succeeded after 0.0 seconds
starting phase `compress-documentation'
phase `compress-documentation' succeeded after 0.0 seconds