starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/fpxfr4pxli6p3fx646agfln7hqy04l7r-r-minimal-4.1.2/bin:/gnu/store/hqysqhh80g7qy8287b8p2gwz0379vh50-tar-1.34/bin:/gnu/store/8rvnivj15gmirawhikgbjaang5b4w779-gzip-1.10/bin:/gnu/store/64zk0izmaframq6cd0xlsmk0rxn3zc52-bzip2-1.0.8/bin:/gnu/store/z6bw81zw5b5jm3p02y906p0wnjbjqa7n-xz-5.2.5/bin:/gnu/store/jfmrxybjkd0nvh1n34hbzv0lwsnmxz1v-file-5.39/bin:/gnu/store/49j4cjqc8sckyh4qhf9j9dmc6anc8wk9-diffutils-3.8/bin:/gnu/store/znjj5y98lvi46fll85qg22ngz966gx1d-patch-2.7.6/bin:/gnu/store/yq3xalg1p2p5p5hfpw4v5jx0v86qw45w-findutils-4.8.0/bin:/gnu/store/bgyr8c7bl1sqhpapm2kghiya0k6zvi51-gawk-5.1.0/bin:/gnu/store/dsldg7i4y6hxdknh7cv93rbxbp17xm93-sed-4.8/bin:/gnu/store/4znchc8whjbs50mvxgc0skmkvyhy9xk1-grep-3.6/bin:/gnu/store/wllq3y3sl5bldm9vsx2fcwhcmks4i9ar-coreutils-8.32/bin:/gnu/store/zyhbjfyqh10yiw1dw1x1i7n70jm9ygdn-make-4.3/bin:/gnu/store/2an4h5ndc22dv62q3l985ciq862q4bj7-bash-minimal-5.1.8/bin:/gnu/store/g58zxpycy64m790vwjlzpadmbn065fia-ld-wrapper-0/bin:/gnu/store/cr38d3gvf52ckns2b01lwgw86hk3mvcc-binutils-2.37/bin:/gnu/store/h88kd46c8br0wc4i6hq19cjby081ina4-gcc-10.3.0/bin:/gnu/store/mjdjgiz9k5rrbj440r16z6p5g33nr7d7-glibc-2.33/bin:/gnu/store/mjdjgiz9k5rrbj440r16z6p5g33nr7d7-glibc-2.33/sbin:/gnu/store/iv96qv3nm6xw999p1ni5xlsgkqzxm1y8-curl-7.79.1/bin'
environment variable `R_LIBS_SITE' set to `/gnu/store/a4v41pybpghsfn9s5aaiap8ckkkfz06y-r-biocgenerics-0.40.0/site-library/:/gnu/store/g6c08ssixc0dkq04amx9hiyyad4mp83p-r-biostrings-2.62.0/site-library/:/gnu/store/fd067z0fvwbdxamjmmd1mchyi7kbwz34-r-genomeinfodb-1.30.0/site-library/:/gnu/store/whx7n74yy455k5jknpq10amj3kzgn86r-r-genomicranges-1.46.1/site-library/:/gnu/store/g0k56si5vikp7bwpqx43mlfl5is0n61p-r-iranges-2.28.0/site-library/:/gnu/store/ypcd1f79c1ifnsiycs4kcbq0a0v7ihc9-r-matrixstats-0.61.0/site-library/:/gnu/store/4w039xvysc5kb0s4xsi9r70zqv3i0fc1-r-rsamtools-2.10.0/site-library/:/gnu/store/yjirbai0s4z4pf59nvwsg5rbyh9r278q-r-rtracklayer-1.54.0/site-library/:/gnu/store/vygq99ll6pvzn2fvim1910b31a9cc1rz-r-s4vectors-0.32.3/site-library/:/gnu/store/yymb9zm4878x840yak1pvm4r960nln92-r-xvector-0.34.0/site-library/:/gnu/store/lffs8k6jcggmkrmfzyv364z7jry8gqq8-r-crayon-1.4.2/site-library/:/gnu/store/gadrv3mrzp5r373394pm9r19vchb6la0-r-rcurl-1.95-0.1.2/site-library/:/gnu/store/izpkx7khyk0wlwhfyijl7ripvbikkrdn-r-genomeinfodbdata-1.2.0/site-library/:/gnu/store/sqqiy247p5p7ki3q0rd16kwhz256wf9j-r-rhtslib-1.26.0/site-library/:/gnu/store/p3i309aipfa94cb5cvpgqvwlyql8d004-r-bitops-1.0-7/site-library/:/gnu/store/9ljw57dz5xbkcrgmrp6lwm3l1w3sjkfc-r-biocparallel-1.28.3/site-library/:/gnu/store/f3pqilw6x4hy2vjpsdj08mlwmdvaddq6-r-zlibbioc-1.40.0/site-library/:/gnu/store/szx8mj25f1aw37da1sghhqw1m2azshg4-r-xml-3.99-0.8/site-library/:/gnu/store/xwjzv0agv7c90pargphlbg3xgi37r3il-r-restfulr-0.0.13/site-library/:/gnu/store/hl32n0g73im463zpianq9kyrki2bdjp1-r-genomicalignments-1.30.0/site-library/:/gnu/store/0h7fc6wv12660yqinnlyqy46gidw8brq-r-biocio-1.4.0/site-library/:/gnu/store/jyabqyfl72i9cdr9aqi1gnl1xdx64ha0-r-bh-1.78.0-0/site-library/:/gnu/store/cyxjkp5jqci0c3wl86zaqmbcfhbfi0ab-r-snow-0.4-4/site-library/:/gnu/store/gfr4z2mj2p1xh44rh35p8k9vpsy7z97g-r-futile-logger-1.4.3/site-library/:/gnu/store/g318xp0lbn7mvcbjbdjzshiz0s18pq4q-r-yaml-2.2.1/site-library/:/gnu/store/ai9lm42a2d73v2rkxi5i73lx3qksq3yv-r-rjson-0.2.20/site-library/:/gnu/store/zww65mzaw3hdixa54l905wmlwkzz4f2a-r-summarizedexperiment-1.24.0/site-library/:/gnu/store/wmxbjmnc6fw14azss2n89bkfc7zzsxjl-r-lambda-r-1.2.4/site-library/:/gnu/store/irpdqmgd9iirwi2ncwxnsk16s9g82gbc-r-futile-options-1.0.1/site-library/:/gnu/store/d8nafd97qxb9iznpl4m5xblqzl0ngmbv-r-matrixgenerics-1.6.0/site-library/:/gnu/store/ads1ydlhj5v16jqng8hl2qb87yjc0ww6-r-matrix-1.4-0/site-library/:/gnu/store/m367vxqdin32ifa61s72gwmldiqrhdwd-r-delayedarray-0.20.0/site-library/:/gnu/store/s9hg4nlml3g6gplgfizwspyc5aihc3ps-r-biobase-2.54.0/site-library/:/gnu/store/xdmb1bwfyf3qx95h9p4xqw33s13ga389-r-formatr-1.11/site-library/:/gnu/store/kwg7xzcnrra79r5fq8jz0hv0753q9ja7-r-lattice-0.20-45/site-library/'
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/64zk0izmaframq6cd0xlsmk0rxn3zc52-bzip2-1.0.8/include:/gnu/store/z6bw81zw5b5jm3p02y906p0wnjbjqa7n-xz-5.2.5/include:/gnu/store/jfmrxybjkd0nvh1n34hbzv0lwsnmxz1v-file-5.39/include:/gnu/store/bgyr8c7bl1sqhpapm2kghiya0k6zvi51-gawk-5.1.0/include:/gnu/store/zyhbjfyqh10yiw1dw1x1i7n70jm9ygdn-make-4.3/include:/gnu/store/cr38d3gvf52ckns2b01lwgw86hk3mvcc-binutils-2.37/include:/gnu/store/h88kd46c8br0wc4i6hq19cjby081ina4-gcc-10.3.0/include:/gnu/store/mjdjgiz9k5rrbj440r16z6p5g33nr7d7-glibc-2.33/include:/gnu/store/k8xlwnnmhgmvzyxxfjq3z3fci73zx7x9-linux-libre-headers-5.10.35/include:/gnu/store/cahmfd1kbv06a8wwv7mm3ir847vn2s43-zlib-1.2.11/include:/gnu/store/iv96qv3nm6xw999p1ni5xlsgkqzxm1y8-curl-7.79.1/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/64zk0izmaframq6cd0xlsmk0rxn3zc52-bzip2-1.0.8/include:/gnu/store/z6bw81zw5b5jm3p02y906p0wnjbjqa7n-xz-5.2.5/include:/gnu/store/jfmrxybjkd0nvh1n34hbzv0lwsnmxz1v-file-5.39/include:/gnu/store/bgyr8c7bl1sqhpapm2kghiya0k6zvi51-gawk-5.1.0/include:/gnu/store/zyhbjfyqh10yiw1dw1x1i7n70jm9ygdn-make-4.3/include:/gnu/store/cr38d3gvf52ckns2b01lwgw86hk3mvcc-binutils-2.37/include:/gnu/store/h88kd46c8br0wc4i6hq19cjby081ina4-gcc-10.3.0/include/c++:/gnu/store/h88kd46c8br0wc4i6hq19cjby081ina4-gcc-10.3.0/include:/gnu/store/mjdjgiz9k5rrbj440r16z6p5g33nr7d7-glibc-2.33/include:/gnu/store/k8xlwnnmhgmvzyxxfjq3z3fci73zx7x9-linux-libre-headers-5.10.35/include:/gnu/store/cahmfd1kbv06a8wwv7mm3ir847vn2s43-zlib-1.2.11/include:/gnu/store/iv96qv3nm6xw999p1ni5xlsgkqzxm1y8-curl-7.79.1/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/fpxfr4pxli6p3fx646agfln7hqy04l7r-r-minimal-4.1.2/lib:/gnu/store/64zk0izmaframq6cd0xlsmk0rxn3zc52-bzip2-1.0.8/lib:/gnu/store/z6bw81zw5b5jm3p02y906p0wnjbjqa7n-xz-5.2.5/lib:/gnu/store/jfmrxybjkd0nvh1n34hbzv0lwsnmxz1v-file-5.39/lib:/gnu/store/bgyr8c7bl1sqhpapm2kghiya0k6zvi51-gawk-5.1.0/lib:/gnu/store/cr38d3gvf52ckns2b01lwgw86hk3mvcc-binutils-2.37/lib:/gnu/store/mjdjgiz9k5rrbj440r16z6p5g33nr7d7-glibc-2.33/lib:/gnu/store/88bdm10sayqjnggrxlbdmk3rv1qqdrvl-glibc-2.33-static/lib:/gnu/store/y4x3whxg8i1p9w9vy67lz3cw8xfil8bh-glibc-utf8-locales-2.33/lib:/gnu/store/cahmfd1kbv06a8wwv7mm3ir847vn2s43-zlib-1.2.11/lib:/gnu/store/iv96qv3nm6xw999p1ni5xlsgkqzxm1y8-curl-7.79.1/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/y4x3whxg8i1p9w9vy67lz3cw8xfil8bh-glibc-utf8-locales-2.33/lib/locale'
environment variable `SSL_CERT_DIR' unset
environment variable `SSL_CERT_FILE' unset
environment variable `CURL_CA_BUNDLE' unset
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'en_US.utf8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
BSgenome/DESCRIPTION
BSgenome/NAMESPACE
BSgenome/NEWS
BSgenome/R/
BSgenome/R/BSgenome-class.R
BSgenome/R/BSgenome-utils.R
BSgenome/R/BSgenomeForge.R
BSgenome/R/BSgenomeViews-class.R
BSgenome/R/InjectSNPsHandler-class.R
BSgenome/R/ODLT_SNPlocs-class.R
BSgenome/R/OldFashionSNPlocs-class.R
BSgenome/R/OnDiskLongTable-class.R
BSgenome/R/OnDiskLongTable_old-class.R
BSgenome/R/OnDiskNamedSequences-class.R
BSgenome/R/SNPlocs-class.R
BSgenome/R/XtraSNPlocs-class.R
BSgenome/R/available.genomes.R
BSgenome/R/bsapply.R
BSgenome/R/export-methods.R
BSgenome/R/extractAt-methods.R
BSgenome/R/getSeq-methods.R
BSgenome/R/injectSNPs.R
BSgenome/R/utils.R
BSgenome/README.md
BSgenome/TODO
BSgenome/build/
BSgenome/build/vignette.rds
BSgenome/inst/
BSgenome/inst/doc/
BSgenome/inst/doc/BSgenomeForge.R
BSgenome/inst/doc/BSgenomeForge.Rnw
BSgenome/inst/doc/BSgenomeForge.pdf
BSgenome/inst/doc/GenomeSearching.R
BSgenome/inst/doc/GenomeSearching.Rnw
BSgenome/inst/doc/GenomeSearching.pdf
BSgenome/inst/extdata/
BSgenome/inst/extdata/GentlemanLab/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-tools/NOTES.TXT
BSgenome/inst/extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-tools/splitbigfasta.sh
BSgenome/inst/extdata/GentlemanLab/BSgenome.Amellifera.NCBI.AmelHAv3.1-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Amellifera.NCBI.AmelHAv3.1-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Amellifera.NCBI.AmelHAv3.1-tools/fasta_to_sorted_2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Amellifera.UCSC.apiMel2-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Amellifera.UCSC.apiMel2.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.04232008-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR10.1-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR10.1-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR10.1-tools/splitbigfasta.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR9-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR9-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR9-tools/NOTES.TXT
BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau3-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau3.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau4-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau4.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6-tools/splitbigfasta.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau8-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau9-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau9-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau9-tools/sort_bosTau9.2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce10-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce11-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce2-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce6-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam2-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam2.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3-tools/splitbigfasta.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Cjacchus.UCSC.calJac3-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Cjacchus.UCSC.calJac3-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Cjacchus.UCSC.calJac3-tools/sort_calJac3.2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Creinhardtii.JGI.v5.6-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Creinhardtii.JGI.v5.6-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Creinhardtii.JGI.v5.6-tools/CITATION
BSgenome/inst/extdata/GentlemanLab/BSgenome.Creinhardtii.JGI.v5.6-tools/fasta_to_2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm2-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm2.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm3-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm3.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm6-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer10-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer10-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer10-tools/sort_danRer10.2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer11-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer11-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer11-tools/sort_danRer11.2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-tools/NOTES.TXT
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-tools/splitbigfasta.sh
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-tools/NOTES.TXT
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-tools/splitbigfasta.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-tools/NOTES.TXT
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-tools/splitbigfasta.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Dvirilis.Ensembl.dvircaf1-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ecoli.NCBI.20080805-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Gaculeatus.UCSC.gasAcu1-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Gaculeatus.UCSC.gasAcu1.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal3-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal3.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4-tools/splitbigfasta.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal5-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal5-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal5-tools/sort_galGal5.2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal6-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal6-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal6-tools/sort_galGal6.2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Gmellonella.NCBI.ASM364042v2-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Gmellonella.NCBI.ASM364042v2-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Gmellonella.NCBI.ASM364042v2-tools/fasta_to_sorted_2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.NCBI.GRCh38-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.NCBI.GRCh38-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.NCBI.GRCh38-tools/splitbigfasta.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg17-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg17.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg18-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg18.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg19-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg19.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg38-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg38.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mdomestica.UCSC.monDom5-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mdomestica.UCSC.monDom5-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mdomestica.UCSC.monDom5-tools/sort_monDom5.2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mfascicularis.NCBI.5.0-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mfascicularis.NCBI.5.0-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mfascicularis.NCBI.5.0-tools/fasta_to_sorted2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mfuro.UCSC.musFur1-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac10-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac10-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac10-tools/sort_rheMac10.2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac2-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac2.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3-tools/splitbigfasta.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac8-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac8-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac8-tools/sort_rheMac8.2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm10-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm10.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm39-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm8-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm8.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm9-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm9.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ppaniscus.UCSC.panPan1-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ppaniscus.UCSC.panPan2-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro2-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro2.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3-tools/splitbigfasta.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro5-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro5-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro5-tools/sort_panTro5.2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro6-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro6-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro6-tools/sort_panTro6.2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn4-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn4.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5-tools/splitbigfasta.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn6-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn7-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Scerevisiae.UCSC.sacCer1-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Scerevisiae.UCSC.sacCer2-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Scerevisiae.UCSC.sacCer3-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr11-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr11-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr11-tools/sort_susScr11.2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3-tools/splitbigfasta.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut1-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut1.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut2-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut2-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut2-tools/sort_taeGut2.2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.influenza.NCBI.20100628-seed
BSgenome/inst/extdata/GentlemanLab/ForgeAll.R
BSgenome/inst/extdata/GentlemanLab/bump_seed_version.sh
BSgenome/inst/extdata/ce2chrM.fa.gz
BSgenome/inst/extdata/ce2chrX.fa.gz
BSgenome/inst/extdata/ce2dict0.fa
BSgenome/inst/pkgtemplates/
BSgenome/inst/pkgtemplates/BSgenome_datapkg/
BSgenome/inst/pkgtemplates/BSgenome_datapkg/DESCRIPTION
BSgenome/inst/pkgtemplates/BSgenome_datapkg/NAMESPACE
BSgenome/inst/pkgtemplates/BSgenome_datapkg/R/
BSgenome/inst/pkgtemplates/BSgenome_datapkg/R/zzz.R
BSgenome/inst/pkgtemplates/BSgenome_datapkg/inst/
BSgenome/inst/pkgtemplates/BSgenome_datapkg/inst/extdata/
BSgenome/inst/pkgtemplates/BSgenome_datapkg/man/
BSgenome/inst/pkgtemplates/BSgenome_datapkg/man/package.Rd
BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/
BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/DESCRIPTION
BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/NAMESPACE
BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/R/
BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/R/zzz.R
BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/inst/
BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/inst/extdata/
BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/man/
BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/man/package.Rd
BSgenome/man/
BSgenome/man/BSParams-class.Rd
BSgenome/man/BSgenome-class.Rd
BSgenome/man/BSgenome-utils.Rd
BSgenome/man/BSgenomeForge.Rd
BSgenome/man/BSgenomeViews-class.Rd
BSgenome/man/SNPlocs-class.Rd
BSgenome/man/XtraSNPlocs-class.Rd
BSgenome/man/available.genomes.Rd
BSgenome/man/bsapply.Rd
BSgenome/man/export-methods.Rd
BSgenome/man/getSeq-methods.Rd
BSgenome/man/injectSNPs.Rd
BSgenome/vignettes/
BSgenome/vignettes/BSgenomeForge.Rnw
BSgenome/vignettes/GenomeSearching.Rnw
phase `unpack' succeeded after 0.1 seconds
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starting phase `patch-source-shebangs'
patch-shebang: ./inst/extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-tools/splitbigfasta.sh: changing `/bin/bash' to `/gnu/store/2an4h5ndc22dv62q3l985ciq862q4bj7-bash-minimal-5.1.8/bin/bash'
patch-shebang: ./inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-tools/splitbigfasta.sh: changing `/bin/bash' to `/gnu/store/2an4h5ndc22dv62q3l985ciq862q4bj7-bash-minimal-5.1.8/bin/bash'
patch-shebang: ./inst/extdata/GentlemanLab/bump_seed_version.sh: changing `/bin/bash' to `/gnu/store/2an4h5ndc22dv62q3l985ciq862q4bj7-bash-minimal-5.1.8/bin/bash'
phase `patch-source-shebangs' succeeded after 0.0 seconds
starting phase `patch-generated-file-shebangs'
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starting phase `install'
* installing *source* package ‘BSgenome’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BSgenome)
phase `install' succeeded after 66.1 seconds
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starting phase `patch-dot-desktop-files'
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starting phase `make-dynamic-linker-cache'
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starting phase `install-license-files'
installing 0 license files from '.'
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starting phase `reset-gzip-timestamps'
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starting phase `compress-documentation'
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