starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/33l9l4gxx9ayzxd1b78qpchafvxixw89-cmake-minimal-3.21.4/bin:/gnu/store/z2hfj0g9z7hbgh1m1kam9b1naj406zif-cxxtest-4.4/bin:/gnu/store/m5d677r3jj3pkf590hck3c894vvlgkij-python-minimal-3.9.9/bin:/gnu/store/3nw1jhybwdbbsx8v821bm71h205462wz-pkg-config-0.29.2/bin:/gnu/store/g1acc7rm4rwaidsdzb893q0bqq1alxyf-guile-2.2.7/bin:/gnu/store/99c25918hl9pihix8hparmc96q6zrpwy-tar-1.34/bin:/gnu/store/l0yga4lrwwf74rz7fb0dadglg27ajpsx-gzip-1.10/bin:/gnu/store/ihakfb51zdgjz3v9nkj0ja9zk9ng8xzl-bzip2-1.0.8/bin:/gnu/store/fk24dx8qz1b5smnc4ljfw25xn7yjps0q-xz-5.2.5/bin:/gnu/store/vl1b3nq6gijpzbl03zq92m5dwgs17nik-file-5.39/bin:/gnu/store/h0rx6y95zin61fp5wlyjly4g9j2hma18-diffutils-3.8/bin:/gnu/store/7j8j7m0kgb7kv2fc18qvrdj7gs3jc4mx-patch-2.7.6/bin:/gnu/store/x4yglk9pn2s2ixl1b4lj151bd2yvlgww-findutils-4.8.0/bin:/gnu/store/vzq0il5z2d6ksllb525m9xaqzv829g3k-gawk-5.1.0/bin:/gnu/store/cnwr7widbi6470kfyb13krx46kz5anmy-sed-4.8/bin:/gnu/store/bx47clwnxn51m7jdwfimz4lw2fh8g21v-grep-3.6/bin:/gnu/store/9a0cjh929maqvkxn3inv6jqbxn72fkx0-coreutils-8.32/bin:/gnu/store/dhx00nrv9r52f6xivg0xa4iihpl9awyk-make-4.3/bin:/gnu/store/7s2zlc4r9wqvlh9x2gqmzm4lnmbsdzmn-bash-minimal-5.1.8/bin:/gnu/store/4bzvr16pyax9224v9r72rqxswj9931sb-ld-wrapper-0/bin:/gnu/store/v4a7zw8w52v64kw5781ypa8gjwd098jz-binutils-2.37/bin:/gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/bin:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/bin:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/sbin'
environment variable `CMAKE_PREFIX_PATH' set to `/gnu/store/33l9l4gxx9ayzxd1b78qpchafvxixw89-cmake-minimal-3.21.4/:/gnu/store/z2hfj0g9z7hbgh1m1kam9b1naj406zif-cxxtest-4.4/:/gnu/store/m5d677r3jj3pkf590hck3c894vvlgkij-python-minimal-3.9.9/:/gnu/store/3nw1jhybwdbbsx8v821bm71h205462wz-pkg-config-0.29.2/:/gnu/store/lzcqw021q7fmq8wfhx4mx6vdih9v44v0-atomspace-5.0.3-1.86c848d/:/gnu/store/m1vkm42mjil2dd44a7238sggddnbmg40-cogutil-2.0.3-1.b07b41b/:/gnu/store/z4504krr95hj92ax782qhrqrcvndykyk-gmp-6.2.1/:/gnu/store/g1acc7rm4rwaidsdzb893q0bqq1alxyf-guile-2.2.7/:/gnu/store/99c25918hl9pihix8hparmc96q6zrpwy-tar-1.34/:/gnu/store/l0yga4lrwwf74rz7fb0dadglg27ajpsx-gzip-1.10/:/gnu/store/ihakfb51zdgjz3v9nkj0ja9zk9ng8xzl-bzip2-1.0.8/:/gnu/store/fk24dx8qz1b5smnc4ljfw25xn7yjps0q-xz-5.2.5/:/gnu/store/vl1b3nq6gijpzbl03zq92m5dwgs17nik-file-5.39/:/gnu/store/h0rx6y95zin61fp5wlyjly4g9j2hma18-diffutils-3.8/:/gnu/store/7j8j7m0kgb7kv2fc18qvrdj7gs3jc4mx-patch-2.7.6/:/gnu/store/x4yglk9pn2s2ixl1b4lj151bd2yvlgww-findutils-4.8.0/:/gnu/store/vzq0il5z2d6ksllb525m9xaqzv829g3k-gawk-5.1.0/:/gnu/store/cnwr7widbi6470kfyb13krx46kz5anmy-sed-4.8/:/gnu/store/bx47clwnxn51m7jdwfimz4lw2fh8g21v-grep-3.6/:/gnu/store/9a0cjh929maqvkxn3inv6jqbxn72fkx0-coreutils-8.32/:/gnu/store/dhx00nrv9r52f6xivg0xa4iihpl9awyk-make-4.3/:/gnu/store/7s2zlc4r9wqvlh9x2gqmzm4lnmbsdzmn-bash-minimal-5.1.8/:/gnu/store/4bzvr16pyax9224v9r72rqxswj9931sb-ld-wrapper-0/:/gnu/store/v4a7zw8w52v64kw5781ypa8gjwd098jz-binutils-2.37/:/gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/:/gnu/store/1s4k8h3h1ka9za4yzg0dfjnlhab5k14p-glibc-2.33-static/:/gnu/store/6p5m4cv8psfzy5xn5yhvhmjl261wg34m-glibc-utf8-locales-2.33/:/gnu/store/bgh998npsx1na0ssr5qgmljzbhy5vf35-python-ply-3.11/:/gnu/store/kf64mawvi6hzvcskfbnh34rq1swph30h-libgc-8.0.4/:/gnu/store/w39mfnah9k0wl2vw86f805x5rlbcvia3-libltdl-2.4.6/:/gnu/store/61r7gd0jc0kh9h3718pgsrvp6gqd293f-libunistring-0.9.10/:/gnu/store/wsx4kz1gh6cpdhx393frhqknmswbggq8-linux-libre-headers-5.10.35/'
environment variable `SSL_CERT_DIR' unset
environment variable `SSL_CERT_FILE' unset
environment variable `GUIX_PYTHONPATH' set to `/gnu/store/z2hfj0g9z7hbgh1m1kam9b1naj406zif-cxxtest-4.4/lib/python3.9/site-packages:/gnu/store/m5d677r3jj3pkf590hck3c894vvlgkij-python-minimal-3.9.9/lib/python3.9/site-packages:/gnu/store/bgh998npsx1na0ssr5qgmljzbhy5vf35-python-ply-3.11/lib/python3.9/site-packages'
environment variable `PYTHONTZPATH' unset
environment variable `PKG_CONFIG_PATH' set to `/gnu/store/m5d677r3jj3pkf590hck3c894vvlgkij-python-minimal-3.9.9/lib/pkgconfig:/gnu/store/z4504krr95hj92ax782qhrqrcvndykyk-gmp-6.2.1/lib/pkgconfig:/gnu/store/g1acc7rm4rwaidsdzb893q0bqq1alxyf-guile-2.2.7/lib/pkgconfig:/gnu/store/fk24dx8qz1b5smnc4ljfw25xn7yjps0q-xz-5.2.5/lib/pkgconfig:/gnu/store/vl1b3nq6gijpzbl03zq92m5dwgs17nik-file-5.39/lib/pkgconfig:/gnu/store/kf64mawvi6hzvcskfbnh34rq1swph30h-libgc-8.0.4/lib/pkgconfig'
environment variable `GUILE_LOAD_PATH' set to `/gnu/store/lzcqw021q7fmq8wfhx4mx6vdih9v44v0-atomspace-5.0.3-1.86c848d/share/guile/site/2.2'
environment variable `GUILE_LOAD_COMPILED_PATH' unset
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/z2hfj0g9z7hbgh1m1kam9b1naj406zif-cxxtest-4.4/include:/gnu/store/m5d677r3jj3pkf590hck3c894vvlgkij-python-minimal-3.9.9/include:/gnu/store/lzcqw021q7fmq8wfhx4mx6vdih9v44v0-atomspace-5.0.3-1.86c848d/include:/gnu/store/m1vkm42mjil2dd44a7238sggddnbmg40-cogutil-2.0.3-1.b07b41b/include:/gnu/store/z4504krr95hj92ax782qhrqrcvndykyk-gmp-6.2.1/include:/gnu/store/g1acc7rm4rwaidsdzb893q0bqq1alxyf-guile-2.2.7/include:/gnu/store/ihakfb51zdgjz3v9nkj0ja9zk9ng8xzl-bzip2-1.0.8/include:/gnu/store/fk24dx8qz1b5smnc4ljfw25xn7yjps0q-xz-5.2.5/include:/gnu/store/vl1b3nq6gijpzbl03zq92m5dwgs17nik-file-5.39/include:/gnu/store/vzq0il5z2d6ksllb525m9xaqzv829g3k-gawk-5.1.0/include:/gnu/store/dhx00nrv9r52f6xivg0xa4iihpl9awyk-make-4.3/include:/gnu/store/v4a7zw8w52v64kw5781ypa8gjwd098jz-binutils-2.37/include:/gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/include:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/include:/gnu/store/kf64mawvi6hzvcskfbnh34rq1swph30h-libgc-8.0.4/include:/gnu/store/w39mfnah9k0wl2vw86f805x5rlbcvia3-libltdl-2.4.6/include:/gnu/store/61r7gd0jc0kh9h3718pgsrvp6gqd293f-libunistring-0.9.10/include:/gnu/store/wsx4kz1gh6cpdhx393frhqknmswbggq8-linux-libre-headers-5.10.35/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/z2hfj0g9z7hbgh1m1kam9b1naj406zif-cxxtest-4.4/include:/gnu/store/m5d677r3jj3pkf590hck3c894vvlgkij-python-minimal-3.9.9/include:/gnu/store/lzcqw021q7fmq8wfhx4mx6vdih9v44v0-atomspace-5.0.3-1.86c848d/include:/gnu/store/m1vkm42mjil2dd44a7238sggddnbmg40-cogutil-2.0.3-1.b07b41b/include:/gnu/store/z4504krr95hj92ax782qhrqrcvndykyk-gmp-6.2.1/include:/gnu/store/g1acc7rm4rwaidsdzb893q0bqq1alxyf-guile-2.2.7/include:/gnu/store/ihakfb51zdgjz3v9nkj0ja9zk9ng8xzl-bzip2-1.0.8/include:/gnu/store/fk24dx8qz1b5smnc4ljfw25xn7yjps0q-xz-5.2.5/include:/gnu/store/vl1b3nq6gijpzbl03zq92m5dwgs17nik-file-5.39/include:/gnu/store/vzq0il5z2d6ksllb525m9xaqzv829g3k-gawk-5.1.0/include:/gnu/store/dhx00nrv9r52f6xivg0xa4iihpl9awyk-make-4.3/include:/gnu/store/v4a7zw8w52v64kw5781ypa8gjwd098jz-binutils-2.37/include:/gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/include/c++:/gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/include:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/include:/gnu/store/kf64mawvi6hzvcskfbnh34rq1swph30h-libgc-8.0.4/include:/gnu/store/w39mfnah9k0wl2vw86f805x5rlbcvia3-libltdl-2.4.6/include:/gnu/store/61r7gd0jc0kh9h3718pgsrvp6gqd293f-libunistring-0.9.10/include:/gnu/store/wsx4kz1gh6cpdhx393frhqknmswbggq8-linux-libre-headers-5.10.35/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/z2hfj0g9z7hbgh1m1kam9b1naj406zif-cxxtest-4.4/lib:/gnu/store/m5d677r3jj3pkf590hck3c894vvlgkij-python-minimal-3.9.9/lib:/gnu/store/lzcqw021q7fmq8wfhx4mx6vdih9v44v0-atomspace-5.0.3-1.86c848d/lib:/gnu/store/m1vkm42mjil2dd44a7238sggddnbmg40-cogutil-2.0.3-1.b07b41b/lib:/gnu/store/z4504krr95hj92ax782qhrqrcvndykyk-gmp-6.2.1/lib:/gnu/store/g1acc7rm4rwaidsdzb893q0bqq1alxyf-guile-2.2.7/lib:/gnu/store/ihakfb51zdgjz3v9nkj0ja9zk9ng8xzl-bzip2-1.0.8/lib:/gnu/store/fk24dx8qz1b5smnc4ljfw25xn7yjps0q-xz-5.2.5/lib:/gnu/store/vl1b3nq6gijpzbl03zq92m5dwgs17nik-file-5.39/lib:/gnu/store/vzq0il5z2d6ksllb525m9xaqzv829g3k-gawk-5.1.0/lib:/gnu/store/v4a7zw8w52v64kw5781ypa8gjwd098jz-binutils-2.37/lib:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/lib:/gnu/store/1s4k8h3h1ka9za4yzg0dfjnlhab5k14p-glibc-2.33-static/lib:/gnu/store/6p5m4cv8psfzy5xn5yhvhmjl261wg34m-glibc-utf8-locales-2.33/lib:/gnu/store/bgh998npsx1na0ssr5qgmljzbhy5vf35-python-ply-3.11/lib:/gnu/store/kf64mawvi6hzvcskfbnh34rq1swph30h-libgc-8.0.4/lib:/gnu/store/w39mfnah9k0wl2vw86f805x5rlbcvia3-libltdl-2.4.6/lib:/gnu/store/61r7gd0jc0kh9h3718pgsrvp6gqd293f-libunistring-0.9.10/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/6p5m4cv8psfzy5xn5yhvhmjl261wg34m-glibc-utf8-locales-2.33/lib/locale'
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'en_US.utf8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/.gitignore' -> `./.gitignore'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/CMakeLists.txt' -> `./CMakeLists.txt'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/LICENSE' -> `./LICENSE'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/README.md' -> `./README.md'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/relationship-mining/obsolete/README.md' -> `./relationship-mining/obsolete/README.md'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/relationship-mining/obsolete/__init__.py' -> `./relationship-mining/obsolete/__init__.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/relationship-mining/obsolete/bio.py' -> `./relationship-mining/obsolete/bio.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/relationship-mining/obsolete/bio_scheme.scm' -> `./relationship-mining/obsolete/bio_scheme.scm'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/relationship-mining/obsolete/subgraph.py' -> `./relationship-mining/obsolete/subgraph.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/relationship-mining/obsolete/utilities.py' -> `./relationship-mining/obsolete/utilities.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/README.md' -> `./moses-scripts/README.md'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/common.sh' -> `./moses-scripts/common.sh'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/export_models_and_fitness.sh' -> `./moses-scripts/export_models_and_fitness.sh'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/relate_features_and_genes.sh' -> `./moses-scripts/relate_features_and_genes.sh'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/obsolete/README.md' -> `./moses-scripts/obsolete/README.md'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/obsolete/background_knowledge.scm' -> `./moses-scripts/obsolete/background_knowledge.scm'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/obsolete/models.scm' -> `./moses-scripts/obsolete/models.scm'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/obsolete/models_100l.scm' -> `./moses-scripts/obsolete/models_100l.scm'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/obsolete/models_10l.scm' -> `./moses-scripts/obsolete/models_10l.scm'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/obsolete/moses.sh' -> `./moses-scripts/obsolete/moses.sh'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/obsolete/process_Rdata.sh' -> `./moses-scripts/obsolete/process_Rdata.sh'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/obsolete/settings.sh' -> `./moses-scripts/obsolete/settings.sh'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/moses-scripts/obsolete/test.sh' -> `./moses-scripts/obsolete/test.sh'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/MSigDB_to_scheme.py' -> `./knowledge-import/MSigDB_to_scheme.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/README.md' -> `./knowledge-import/README.md'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/RulesOfTranslation.txt' -> `./knowledge-import/RulesOfTranslation.txt'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SifToScheme.py' -> `./knowledge-import/SifToScheme.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/obsolete/Aging-Mythelation.py' -> `./knowledge-import/obsolete/Aging-Mythelation.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/obsolete/GO_Annotation_scm.py' -> `./knowledge-import/obsolete/GO_Annotation_scm.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/obsolete/GO_scm.py' -> `./knowledge-import/obsolete/GO_scm.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/obsolete/MSigDB_to_scheme.py' -> `./knowledge-import/obsolete/MSigDB_to_scheme.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/obsolete/README.md' -> `./knowledge-import/obsolete/README.md'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/obsolete/fix_obo.sh' -> `./knowledge-import/obsolete/fix_obo.sh'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/obsolete/lifeSpanObservation_2015.py' -> `./knowledge-import/obsolete/lifeSpanObservation_2015.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/obsolete/lifespan_observation_to_human_homologue.R' -> `./knowledge-import/obsolete/lifespan_observation_to_human_homologue.R'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/obsolete/load_atoms.py' -> `./knowledge-import/obsolete/load_atoms.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/GO_Annotation_scm.py' -> `./knowledge-import/SNET/GO_Annotation_scm.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/GO_scm.py' -> `./knowledge-import/SNET/GO_scm.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/Physical Entity (PE) Identifier mapping.py' -> `./knowledge-import/SNET/Physical Entity (PE) Identifier mapping.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/Readme.md' -> `./knowledge-import/SNET/Readme.md'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/SMPDB_pathway.py' -> `./knowledge-import/SNET/SMPDB_pathway.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/biogrid.py' -> `./knowledge-import/SNET/biogrid.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/gene2proteinMapping.py' -> `./knowledge-import/SNET/gene2proteinMapping.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/reactome_pathway.py' -> `./knowledge-import/SNET/reactome_pathway.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/uniprot2GO.py' -> `./knowledge-import/SNET/uniprot2GO.py'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/uniprotIDmap.R' -> `./knowledge-import/SNET/uniprotIDmap.R'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/knowledge-import/SNET/current/atomese_translation.md' -> `./knowledge-import/SNET/current/atomese_translation.md'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/CMakeLists.txt' -> `./bioscience/CMakeLists.txt'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/Dockerfile' -> `./bioscience/Dockerfile'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/Dockerfile_Eddie' -> `./bioscience/Dockerfile_Eddie'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/README.md' -> `./bioscience/README.md'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/bioscience.scm' -> `./bioscience/bioscience.scm'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/fig.yml' -> `./bioscience/fig.yml'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/opencog.conf' -> `./bioscience/opencog.conf'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/types/BioScienceTypes.cc' -> `./bioscience/types/BioScienceTypes.cc'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/types/CMakeLists.txt' -> `./bioscience/types/CMakeLists.txt'
`/gnu/store/yr8kz2vavrfjykgksw28y7lbvi8hyllh-agi-bio-0-1.b5c6f3d-checkout/bioscience/types/atom_types.script' -> `./bioscience/types/atom_types.script'
phase `unpack' succeeded after 0.0 seconds
starting phase `fix-unqualified-load'
phase `fix-unqualified-load' succeeded after 0.0 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
patch-shebang: ./knowledge-import/MSigDB_to_scheme.py: warning: no binary for interpreter `python2.7' found in $PATH
patch-shebang: ./knowledge-import/SNET/GO_Annotation_scm.py: warning: no binary for interpreter `python2.7' found in $PATH
patch-shebang: ./knowledge-import/SNET/GO_scm.py: warning: no binary for interpreter `python2.7' found in $PATH
patch-shebang: ./knowledge-import/obsolete/Aging-Mythelation.py: warning: no binary for interpreter `python2.7' found in $PATH
patch-shebang: ./knowledge-import/obsolete/GO_Annotation_scm.py: warning: no binary for interpreter `python2.7' found in $PATH
patch-shebang: ./knowledge-import/obsolete/GO_scm.py: warning: no binary for interpreter `python2.7' found in $PATH
patch-shebang: ./knowledge-import/obsolete/MSigDB_to_scheme.py: warning: no binary for interpreter `python2.7' found in $PATH
patch-shebang: ./knowledge-import/obsolete/fix_obo.sh: changing `/bin/bash' to `/gnu/store/7s2zlc4r9wqvlh9x2gqmzm4lnmbsdzmn-bash-minimal-5.1.8/bin/bash'
patch-shebang: ./knowledge-import/obsolete/lifeSpanObservation_2015.py: warning: no binary for interpreter `python2.7' found in $PATH
patch-shebang: ./knowledge-import/obsolete/load_atoms.py: warning: no binary for interpreter `python2.7' found in $PATH
patch-shebang: ./moses-scripts/export_models_and_fitness.sh: changing `/bin/bash' to `/gnu/store/7s2zlc4r9wqvlh9x2gqmzm4lnmbsdzmn-bash-minimal-5.1.8/bin/bash'
patch-shebang: ./moses-scripts/obsolete/process_Rdata.sh: changing `/bin/bash' to `/gnu/store/7s2zlc4r9wqvlh9x2gqmzm4lnmbsdzmn-bash-minimal-5.1.8/bin/bash'
patch-shebang: ./moses-scripts/obsolete/test.sh: changing `/bin/bash' to `/gnu/store/7s2zlc4r9wqvlh9x2gqmzm4lnmbsdzmn-bash-minimal-5.1.8/bin/bash'
patch-shebang: ./moses-scripts/relate_features_and_genes.sh: changing `/bin/bash' to `/gnu/store/7s2zlc4r9wqvlh9x2gqmzm4lnmbsdzmn-bash-minimal-5.1.8/bin/bash'
phase `patch-source-shebangs' succeeded after 0.0 seconds
starting phase `configure'
source directory: "/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source" (relative from build: "../source")
build directory: "/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build"
running 'cmake' with arguments ("../source" "-DCMAKE_BUILD_TYPE=RelWithDebInfo" "-DCMAKE_INSTALL_PREFIX=/gnu/store/sykv9j64rs7r7h3c2nv1hgbgb6p63v61-agi-bio-0-1.b5c6f3d" "-DCMAKE_INSTALL_LIBDIR=lib" "-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE" "-DCMAKE_INSTALL_RPATH=/gnu/store/sykv9j64rs7r7h3c2nv1hgbgb6p63v61-agi-bio-0-1.b5c6f3d/lib" "-DCMAKE_VERBOSE_MAKEFILE=ON" "-DGUILE_INCLUDE_DIR=/gnu/store/g1acc7rm4rwaidsdzb893q0bqq1alxyf-guile-2.2.7/include/guile/2.2/" "-DGUILE_SITE_DIR=/gnu/store/sykv9j64rs7r7h3c2nv1hgbgb6p63v61-agi-bio-0-1.b5c6f3d/share/guile/site/2.2/")
-- The C compiler identification is GNU 10.3.0
-- The CXX compiler identification is GNU 10.3.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Build type: RelWithDebInfo
-- CogUtil version 2.0.3 found.
-- AtomSpace found.
-- Guile (2.2.7 >= 2.2.2) was found.
-- Found Python3Interp: /gnu/store/m5d677r3jj3pkf590hck3c894vvlgkij-python-minimal-3.9.9/bin/python3  
-- Python 3.9.9 interpreter found.

Building for Linux 5.16.20-gnu

The following components will be built:
-----------------------------------------------
   Bioscience  - Bioscience atom types.

-- Configuring done
CMake Warning (dev) at bioscience/types/CMakeLists.txt:14 (ADD_LIBRARY):
  Policy CMP0115 is not set: Source file extensions must be explicit.  Run
  "cmake --help-policy CMP0115" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  File:

    /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience/types/BioScienceTypes.cc
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_INSTALL_LIBDIR


-- Build files have been written to: /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build
phase `configure' succeeded after 0.9 seconds
starting phase `patch-generated-file-shebangs'
phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `build'
/gnu/store/33l9l4gxx9ayzxd1b78qpchafvxixw89-cmake-minimal-3.21.4/bin/cmake -S/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source -B/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build --check-build-system CMakeFiles/Makefile.cmake 0
/gnu/store/33l9l4gxx9ayzxd1b78qpchafvxixw89-cmake-minimal-3.21.4/bin/cmake -E cmake_progress_start /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/CMakeFiles /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build//CMakeFiles/progress.marks
make  -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make  -f bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/build.make bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/depend
make  -f bioscience/CMakeFiles/SCM_CONFIG.dir/build.make bioscience/CMakeFiles/SCM_CONFIG.dir/depend
make  -f bioscience/types/CMakeFiles/bioscience_atom_types.dir/build.make bioscience/types/CMakeFiles/bioscience_atom_types.dir/depend
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build && /gnu/store/33l9l4gxx9ayzxd1b78qpchafvxixw89-cmake-minimal-3.21.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/DependInfo.cmake --color=
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build && /gnu/store/33l9l4gxx9ayzxd1b78qpchafvxixw89-cmake-minimal-3.21.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/CMakeFiles/SCM_CONFIG.dir/DependInfo.cmake --color=
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build && /gnu/store/33l9l4gxx9ayzxd1b78qpchafvxixw89-cmake-minimal-3.21.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience/types /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types/CMakeFiles/bioscience_atom_types.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make  -f bioscience/CMakeFiles/SCM_CONFIG.dir/build.make bioscience/CMakeFiles/SCM_CONFIG.dir/build
make  -f bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/build.make bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/build
make  -f bioscience/types/CMakeFiles/bioscience_atom_types.dir/build.make bioscience/types/CMakeFiles/bioscience_atom_types.dir/build
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make[2]: Nothing to be done for 'bioscience/CMakeFiles/SCM_CONFIG.dir/build'.
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience && /gnu/store/33l9l4gxx9ayzxd1b78qpchafvxixw89-cmake-minimal-3.21.4/bin/cmake -E copy /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience///bioscience.scm /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/opencog/scm//opencog/bioscience.scm
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
[  0%] Built target SCM_CONFIG
[ 33%] Generating opencog types
cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types && /gnu/store/33l9l4gxx9ayzxd1b78qpchafvxixw89-cmake-minimal-3.21.4/bin/cmake -DSCRIPT_FILE="/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience/types/atom_types.script" -DHEADER_FILE="/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types/atom_types.h" -DDEFINITIONS_FILE="/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types/atom_types.definitions" -DINHERITANCE_FILE="/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types/atom_types.inheritance" -DSCM_FILE="/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types/bioscience_types.scm" -DPYTHON_FILE="/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types/bioscience_types.pyx" -P /gnu/store/lzcqw021q7fmq8wfhx4mx6vdih9v44v0-atomspace-5.0.3-1.86c848d/share/opencog/cmake/OpenCogAtomTypes.cmake
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
[ 33%] Built target COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience
-- Atom type name: GeneNode Gene
-- Atom type name: MoleculeNode Molecule
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
[ 33%] Built target bioscience_atom_types
make  -f bioscience/types/CMakeFiles/bioscience-types.dir/build.make bioscience/types/CMakeFiles/bioscience-types.dir/depend
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build && /gnu/store/33l9l4gxx9ayzxd1b78qpchafvxixw89-cmake-minimal-3.21.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience/types /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types/CMakeFiles/bioscience-types.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make  -f bioscience/types/CMakeFiles/bioscience-types.dir/build.make bioscience/types/CMakeFiles/bioscience-types.dir/build
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
[ 66%] Building CXX object bioscience/types/CMakeFiles/bioscience-types.dir/BioScienceTypes.cc.o
cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types && /gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/bin/c++ -DGUILE_SITE_DIR=\"/gnu/store/sykv9j64rs7r7h3c2nv1hgbgb6p63v61-agi-bio-0-1.b5c6f3d/share/guile/site/2.2/\" -DHAVE_ATOMSPACE -DHAVE_COGUTIL -DHAVE_GUILE -DHAVE_GUILE2 -DHAVE_GUILE_2_2 -DPROJECT_BINARY_DIR=\"/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build\" -DPROJECT_SOURCE_DIR=\"/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source\" -Dbioscience_types_EXPORTS -I/gnu/store/g1acc7rm4rwaidsdzb893q0bqq1alxyf-guile-2.2.7/include/guile/2.2 -I/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source -I/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build -Wall -fPIC -fstack-protector -Wno-variadic-macros -fopenmp -std=gnu++14 -O2 -g -DNDEBUG -fPIC -MD -MT bioscience/types/CMakeFiles/bioscience-types.dir/BioScienceTypes.cc.o -MF CMakeFiles/bioscience-types.dir/BioScienceTypes.cc.o.d -o CMakeFiles/bioscience-types.dir/BioScienceTypes.cc.o -c /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience/types/BioScienceTypes.cc
[100%] Linking CXX shared library libbioscience-types.so
cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types && /gnu/store/33l9l4gxx9ayzxd1b78qpchafvxixw89-cmake-minimal-3.21.4/bin/cmake -E cmake_link_script CMakeFiles/bioscience-types.dir/link.txt --verbose=1
/gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/bin/c++ -fPIC -Wall -fPIC -fstack-protector -Wno-variadic-macros -fopenmp -std=gnu++14 -O2 -g -DNDEBUG -shared -Wl,-soname,libbioscience-types.so -o libbioscience-types.so CMakeFiles/bioscience-types.dir/BioScienceTypes.cc.o  -Wl,-rpath,/gnu/store/lzcqw021q7fmq8wfhx4mx6vdih9v44v0-atomspace-5.0.3-1.86c848d/lib/opencog:/gnu/store/m1vkm42mjil2dd44a7238sggddnbmg40-cogutil-2.0.3-1.b07b41b/lib/opencog:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: -lpthread /gnu/store/lzcqw021q7fmq8wfhx4mx6vdih9v44v0-atomspace-5.0.3-1.86c848d/lib/opencog/libatom_types.so -lpthread /gnu/store/m1vkm42mjil2dd44a7238sggddnbmg40-cogutil-2.0.3-1.b07b41b/lib/opencog/libcogutil.so 
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
[100%] Built target bioscience-types
make[1]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
/gnu/store/33l9l4gxx9ayzxd1b78qpchafvxixw89-cmake-minimal-3.21.4/bin/cmake -E cmake_progress_start /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/CMakeFiles 0
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starting phase `install'
/gnu/store/33l9l4gxx9ayzxd1b78qpchafvxixw89-cmake-minimal-3.21.4/bin/cmake -S/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source -B/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build --check-build-system CMakeFiles/Makefile.cmake 0
/gnu/store/33l9l4gxx9ayzxd1b78qpchafvxixw89-cmake-minimal-3.21.4/bin/cmake -E cmake_progress_start /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/CMakeFiles /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build//CMakeFiles/progress.marks
make  -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make  -f bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/build.make bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/depend
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build && /gnu/store/33l9l4gxx9ayzxd1b78qpchafvxixw89-cmake-minimal-3.21.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make  -f bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/build.make bioscience/CMakeFiles/COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience.dir/build
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience && /gnu/store/33l9l4gxx9ayzxd1b78qpchafvxixw89-cmake-minimal-3.21.4/bin/cmake -E copy /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience///bioscience.scm /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/opencog/scm//opencog/bioscience.scm
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
[  0%] Built target COPY_TO_LOAD_PATH_IN_BUILD_DIR_FROM__tmp_guix-build-agi-bio-0-1.b5c6f3d.drv-0_source_bioscience
make  -f bioscience/CMakeFiles/SCM_CONFIG.dir/build.make bioscience/CMakeFiles/SCM_CONFIG.dir/depend
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build && /gnu/store/33l9l4gxx9ayzxd1b78qpchafvxixw89-cmake-minimal-3.21.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/CMakeFiles/SCM_CONFIG.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make  -f bioscience/CMakeFiles/SCM_CONFIG.dir/build.make bioscience/CMakeFiles/SCM_CONFIG.dir/build
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make[2]: Nothing to be done for 'bioscience/CMakeFiles/SCM_CONFIG.dir/build'.
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
[  0%] Built target SCM_CONFIG
make  -f bioscience/types/CMakeFiles/bioscience_atom_types.dir/build.make bioscience/types/CMakeFiles/bioscience_atom_types.dir/depend
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build && /gnu/store/33l9l4gxx9ayzxd1b78qpchafvxixw89-cmake-minimal-3.21.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience/types /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types/CMakeFiles/bioscience_atom_types.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make  -f bioscience/types/CMakeFiles/bioscience_atom_types.dir/build.make bioscience/types/CMakeFiles/bioscience_atom_types.dir/build
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make[2]: Nothing to be done for 'bioscience/types/CMakeFiles/bioscience_atom_types.dir/build'.
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
[ 33%] Built target bioscience_atom_types
make  -f bioscience/types/CMakeFiles/bioscience-types.dir/build.make bioscience/types/CMakeFiles/bioscience-types.dir/depend
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
cd /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build && /gnu/store/33l9l4gxx9ayzxd1b78qpchafvxixw89-cmake-minimal-3.21.4/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/source/bioscience/types /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/bioscience/types/CMakeFiles/bioscience-types.dir/DependInfo.cmake --color=
Consolidate compiler generated dependencies of target bioscience-types
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make  -f bioscience/types/CMakeFiles/bioscience-types.dir/build.make bioscience/types/CMakeFiles/bioscience-types.dir/build
make[2]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make[2]: Nothing to be done for 'bioscience/types/CMakeFiles/bioscience-types.dir/build'.
make[2]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
[100%] Built target bioscience-types
make[1]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
/gnu/store/33l9l4gxx9ayzxd1b78qpchafvxixw89-cmake-minimal-3.21.4/bin/cmake -E cmake_progress_start /tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build/CMakeFiles 0
make  -f CMakeFiles/Makefile2 preinstall
make[1]: Entering directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
make[1]: Nothing to be done for 'preinstall'.
make[1]: Leaving directory '/tmp/guix-build-agi-bio-0-1.b5c6f3d.drv-0/build'
Install the project...
/gnu/store/33l9l4gxx9ayzxd1b78qpchafvxixw89-cmake-minimal-3.21.4/bin/cmake -P cmake_install.cmake
-- Install configuration: "RelWithDebInfo"
-- Installing: /gnu/store/sykv9j64rs7r7h3c2nv1hgbgb6p63v61-agi-bio-0-1.b5c6f3d/share/guile/site/2.2/opencog/bio-config.scm
-- Installing: /gnu/store/sykv9j64rs7r7h3c2nv1hgbgb6p63v61-agi-bio-0-1.b5c6f3d/share/guile/site/2.2//opencog/bioscience.scm
-- Installing: /gnu/store/sykv9j64rs7r7h3c2nv1hgbgb6p63v61-agi-bio-0-1.b5c6f3d/lib/opencog/libbioscience-types.so
-- Set runtime path of "/gnu/store/sykv9j64rs7r7h3c2nv1hgbgb6p63v61-agi-bio-0-1.b5c6f3d/lib/opencog/libbioscience-types.so" to "/gnu/store/sykv9j64rs7r7h3c2nv1hgbgb6p63v61-agi-bio-0-1.b5c6f3d/lib/opencog:/gnu/store/lzcqw021q7fmq8wfhx4mx6vdih9v44v0-atomspace-5.0.3-1.86c848d/lib/opencog:/gnu/store/m1vkm42mjil2dd44a7238sggddnbmg40-cogutil-2.0.3-1.b07b41b/lib/opencog"
-- Installing: /gnu/store/sykv9j64rs7r7h3c2nv1hgbgb6p63v61-agi-bio-0-1.b5c6f3d/include/opencog/bioscience/types/atom_types.h
-- Installing: /gnu/store/sykv9j64rs7r7h3c2nv1hgbgb6p63v61-agi-bio-0-1.b5c6f3d/share/guile/site/2.2/opencog/bioscience/types/bioscience_types.scm
phase `install' succeeded after 0.2 seconds
starting phase `patch-shebangs'
phase `patch-shebangs' succeeded after 0.0 seconds
starting phase `strip'
stripping binaries in "/gnu/store/sykv9j64rs7r7h3c2nv1hgbgb6p63v61-agi-bio-0-1.b5c6f3d/lib" with "strip" and flags ("--strip-debug")
phase `strip' succeeded after 0.0 seconds
starting phase `validate-runpath'
validating RUNPATH of 1 binaries in "/gnu/store/sykv9j64rs7r7h3c2nv1hgbgb6p63v61-agi-bio-0-1.b5c6f3d/lib"...
phase `validate-runpath' succeeded after 0.0 seconds
starting phase `validate-documentation-location'
phase `validate-documentation-location' succeeded after 0.0 seconds
starting phase `delete-info-dir-file'
phase `delete-info-dir-file' succeeded after 0.0 seconds
starting phase `patch-dot-desktop-files'
phase `patch-dot-desktop-files' succeeded after 0.0 seconds
starting phase `make-dynamic-linker-cache'
phase `make-dynamic-linker-cache' succeeded after 0.0 seconds
starting phase `install-license-files'
installing 1 license files from '../source'
phase `install-license-files' succeeded after 0.0 seconds
starting phase `reset-gzip-timestamps'
phase `reset-gzip-timestamps' succeeded after 0.0 seconds
starting phase `compress-documentation'
phase `compress-documentation' succeeded after 0.0 seconds