starting phase `set-SOURCE-DATE-EPOCH' phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds starting phase `set-paths' environment variable `PATH' set to `/gnu/store/hxr4yq45lgzl1rzxgkaha6zx6999605m-r-minimal-4.0.4/bin:/gnu/store/5j6bryr3znv2g400c4fm33jf1dy703pj-gfortran-7.5.0/bin:/gnu/store/ggfdxvdgbrjvg2cx3mm7yv5j1y433b01-tar-1.32/bin:/gnu/store/ink6zpk9adb2k2w6a0qif3d45vazl7dv-gzip-1.10/bin:/gnu/store/n8dfjyw11airbnfzz192p9bdbgf31kvj-bzip2-1.0.8/bin:/gnu/store/ggq21is2vyq1jkkqrs90brmwayc4rnmy-xz-5.2.4/bin:/gnu/store/qlxznrl2zzivcln9zgyzw2zshqkjirfs-file-5.38/bin:/gnu/store/yl67anl7279qzrd3kxzj97541jzr2k3d-diffutils-3.7/bin:/gnu/store/w5n1p8kj9zn4zmjhr0bjbknakxij67w2-patch-2.7.6/bin:/gnu/store/x03dmf3xhi3il3mx383zpl4zic38iz1p-findutils-4.7.0/bin:/gnu/store/j80hcnd9p1hh0yb5j1r0gn4vd329a78n-gawk-5.0.1/bin:/gnu/store/wk5vdnms96n2iqfpqyg9gl5lhg8vdc32-sed-4.8/bin:/gnu/store/f3qp8l7f6kmfrvwnyix35kax2lv7lmnb-grep-3.4/bin:/gnu/store/wiv74mq31s0vppzm99qwnjkd8xa3albw-coreutils-8.32/bin:/gnu/store/j7fqszmnydxix8l35d7l3b7dj44qjrw4-make-4.3/bin:/gnu/store/7sfbiqh21h90bc6zi8br1xh60m6qgdd5-bash-minimal-5.0.16/bin:/gnu/store/5m8wvcahy3dgpyhxlq5aq85zbvh5jqfz-ld-wrapper-0/bin:/gnu/store/5371r5kyj50l6176lg6jbfzgfgb2xh14-binutils-2.34/bin:/gnu/store/ap7hgyv4rjqmhg4a6cb6cypsh3g1f5q4-gcc-7.5.0/bin:/gnu/store/cb88z63hyg1icd2kkahiink2p291mhr2-glibc-2.31/bin:/gnu/store/cb88z63hyg1icd2kkahiink2p291mhr2-glibc-2.31/sbin' environment variable `R_LIBS_SITE' set to `/gnu/store/c9y1sy5x9ccfmykknvcj7q2wzl4a0nsq-r-survival-3.2-11/site-library/:/gnu/store/8sl8dr103yxz0rx3w3nrxgalwgwgh0z1-r-matrix-1.3-2/site-library/:/gnu/store/cswvy1jvc53f32qxdvjpx6mf7cwzg6b9-r-lattice-0.20-44/site-library/' environment variable `CPATH' set to `/gnu/store/5j6bryr3znv2g400c4fm33jf1dy703pj-gfortran-7.5.0/include:/gnu/store/n8dfjyw11airbnfzz192p9bdbgf31kvj-bzip2-1.0.8/include:/gnu/store/ggq21is2vyq1jkkqrs90brmwayc4rnmy-xz-5.2.4/include:/gnu/store/qlxznrl2zzivcln9zgyzw2zshqkjirfs-file-5.38/include:/gnu/store/j80hcnd9p1hh0yb5j1r0gn4vd329a78n-gawk-5.0.1/include:/gnu/store/j7fqszmnydxix8l35d7l3b7dj44qjrw4-make-4.3/include:/gnu/store/5371r5kyj50l6176lg6jbfzgfgb2xh14-binutils-2.34/include:/gnu/store/ap7hgyv4rjqmhg4a6cb6cypsh3g1f5q4-gcc-7.5.0/include:/gnu/store/cb88z63hyg1icd2kkahiink2p291mhr2-glibc-2.31/include:/gnu/store/nkpdg3jwllrsh7wbkzgflkcpyjn5wp0q-linux-libre-headers-5.4.20/include' environment variable `LIBRARY_PATH' set to `/gnu/store/hxr4yq45lgzl1rzxgkaha6zx6999605m-r-minimal-4.0.4/lib:/gnu/store/n8dfjyw11airbnfzz192p9bdbgf31kvj-bzip2-1.0.8/lib:/gnu/store/ggq21is2vyq1jkkqrs90brmwayc4rnmy-xz-5.2.4/lib:/gnu/store/qlxznrl2zzivcln9zgyzw2zshqkjirfs-file-5.38/lib:/gnu/store/j80hcnd9p1hh0yb5j1r0gn4vd329a78n-gawk-5.0.1/lib:/gnu/store/5371r5kyj50l6176lg6jbfzgfgb2xh14-binutils-2.34/lib:/gnu/store/cb88z63hyg1icd2kkahiink2p291mhr2-glibc-2.31/lib:/gnu/store/z7hanmdmdalqh1v0y7z8ilinfhyfh91d-glibc-2.31-static/lib:/gnu/store/4xjcx6g4i229hzzqpqak6vw9bvqh88gi-glibc-utf8-locales-2.31/lib' environment variable `BASH_LOADABLES_PATH' unset environment variable `C_INCLUDE_PATH' set to `/gnu/store/5j6bryr3znv2g400c4fm33jf1dy703pj-gfortran-7.5.0/include:/gnu/store/n8dfjyw11airbnfzz192p9bdbgf31kvj-bzip2-1.0.8/include:/gnu/store/ggq21is2vyq1jkkqrs90brmwayc4rnmy-xz-5.2.4/include:/gnu/store/qlxznrl2zzivcln9zgyzw2zshqkjirfs-file-5.38/include:/gnu/store/j80hcnd9p1hh0yb5j1r0gn4vd329a78n-gawk-5.0.1/include:/gnu/store/j7fqszmnydxix8l35d7l3b7dj44qjrw4-make-4.3/include:/gnu/store/5371r5kyj50l6176lg6jbfzgfgb2xh14-binutils-2.34/include:/gnu/store/ap7hgyv4rjqmhg4a6cb6cypsh3g1f5q4-gcc-7.5.0/include:/gnu/store/cb88z63hyg1icd2kkahiink2p291mhr2-glibc-2.31/include:/gnu/store/nkpdg3jwllrsh7wbkzgflkcpyjn5wp0q-linux-libre-headers-5.4.20/include' environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/5j6bryr3znv2g400c4fm33jf1dy703pj-gfortran-7.5.0/include/c++:/gnu/store/5j6bryr3znv2g400c4fm33jf1dy703pj-gfortran-7.5.0/include:/gnu/store/n8dfjyw11airbnfzz192p9bdbgf31kvj-bzip2-1.0.8/include:/gnu/store/ggq21is2vyq1jkkqrs90brmwayc4rnmy-xz-5.2.4/include:/gnu/store/qlxznrl2zzivcln9zgyzw2zshqkjirfs-file-5.38/include:/gnu/store/j80hcnd9p1hh0yb5j1r0gn4vd329a78n-gawk-5.0.1/include:/gnu/store/j7fqszmnydxix8l35d7l3b7dj44qjrw4-make-4.3/include:/gnu/store/5371r5kyj50l6176lg6jbfzgfgb2xh14-binutils-2.34/include:/gnu/store/ap7hgyv4rjqmhg4a6cb6cypsh3g1f5q4-gcc-7.5.0/include/c++:/gnu/store/ap7hgyv4rjqmhg4a6cb6cypsh3g1f5q4-gcc-7.5.0/include:/gnu/store/cb88z63hyg1icd2kkahiink2p291mhr2-glibc-2.31/include:/gnu/store/nkpdg3jwllrsh7wbkzgflkcpyjn5wp0q-linux-libre-headers-5.4.20/include' environment variable `GUIX_LOCPATH' set to `/gnu/store/4xjcx6g4i229hzzqpqak6vw9bvqh88gi-glibc-utf8-locales-2.31/lib/locale' phase `set-paths' succeeded after 0.1 seconds starting phase `install-locale' using 'en_US.utf8' locale for category "LC_ALL" phase `install-locale' succeeded after 0.0 seconds starting phase `unpack' cmprsk/ cmprsk/NAMESPACE cmprsk/man/ cmprsk/man/timepoints.Rd cmprsk/man/plot.cuminc.Rd cmprsk/man/extract.cuminc.Rd cmprsk/man/predict.crr.Rd cmprsk/man/print.crr.Rd cmprsk/man/cuminc.Rd cmprsk/man/summary.crr.Rd cmprsk/man/crr.Rd cmprsk/man/plot.predict.crr.Rd cmprsk/man/print.cuminc.Rd cmprsk/DESCRIPTION cmprsk/tests/ cmprsk/tests/Rplots.ps cmprsk/tests/test.Rout.save cmprsk/tests/Rplots.pdf cmprsk/tests/test.R cmprsk/src/ cmprsk/src/crr.f cmprsk/src/tpoi.f cmprsk/src/cincsub.f cmprsk/src/crstm.f cmprsk/COPYING cmprsk/R/ cmprsk/R/cmprsk.R cmprsk/MD5 phase `unpack' succeeded after 0.0 seconds starting phase `patch-usr-bin-file' phase `patch-usr-bin-file' succeeded after 0.0 seconds starting phase `patch-source-shebangs' phase `patch-source-shebangs' succeeded after 0.0 seconds starting phase `patch-generated-file-shebangs' phase `patch-generated-file-shebangs' succeeded after 0.0 seconds starting phase `install' * installing *source* package ‘cmprsk’ ... ** package ‘cmprsk’ successfully unpacked and MD5 sums checked ** using staged installation ** libs gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c cincsub.f -o cincsub.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c crr.f -o crr.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c crstm.f -o crstm.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c tpoi.f -o tpoi.o gcc -shared -L/gnu/store/hxr4yq45lgzl1rzxgkaha6zx6999605m-r-minimal-4.0.4/lib/R/lib -L/usr/local/lib -o cmprsk.so cincsub.o crr.o crstm.o tpoi.o -L/gnu/store/4222gbmymk9fhwly66zj6ap8lx9aj76z-gfortran-7.5.0-lib/lib/gcc/aarch64-unknown-linux-gnu/7.5.0 -L/gnu/store/4222gbmymk9fhwly66zj6ap8lx9aj76z-gfortran-7.5.0-lib/lib -lgfortran -lm -L/gnu/store/hxr4yq45lgzl1rzxgkaha6zx6999605m-r-minimal-4.0.4/lib/R/lib -lR installing to /gnu/store/x4y51ww5423cqv5bd8v8vqag5fprx0ly-r-cmprsk-2.2-10/site-library/00LOCK-cmprsk/00new/cmprsk/libs ** R ** tests ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cmprsk) phase `install' succeeded after 14.7 seconds starting phase `check' Testing examples for package ‘cmprsk’ Running specific tests for package ‘cmprsk’ Running ‘test.R’ comparing ‘test.Rout’ to ‘test.Rout.save’ ... OK phase `check' succeeded after 8.6 seconds starting phase `patch-shebangs' phase `patch-shebangs' succeeded after 0.0 seconds starting phase `strip' phase `strip' succeeded after 0.0 seconds starting phase `validate-runpath' phase `validate-runpath' succeeded after 0.0 seconds starting phase `validate-documentation-location' phase `validate-documentation-location' succeeded after 0.0 seconds starting phase `delete-info-dir-file' phase `delete-info-dir-file' succeeded after 0.0 seconds starting phase `patch-dot-desktop-files' phase `patch-dot-desktop-files' succeeded after 0.0 seconds starting phase `install-license-files' installing 1 license files from '.' phase `install-license-files' succeeded after 0.0 seconds starting phase `reset-gzip-timestamps' phase `reset-gzip-timestamps' succeeded after 0.0 seconds starting phase `compress-documentation' phase `compress-documentation' succeeded after 0.0 seconds