starting phase `set-SOURCE-DATE-EPOCH' phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds starting phase `set-paths' environment variable `PATH' set to `/gnu/store/f8s95qc6dfhl0r45m70hczw5zip0xjxq-python-wrapper-3.8.2/bin:/gnu/store/kd16r2qb0s7g9ixc6agn485nhbgakdzj-python-numpy-1.17.3/bin:/gnu/store/1ggy0jz9lpnzixj94hi5knx3m1hcj7f2-python-cython-0.29.22/bin:/gnu/store/5afkbxcgzlx43x80zvqhvr1mgx8s9mnw-kentutils-302.0.0/bin:/gnu/store/436410968f8mpdlsn1pw456mpgwmbh4m-python-pytest-5.3.5/bin:/gnu/store/xk0a4yimxbv2h5sm61vm31whzw8hs6k5-bedtools-2.30.0/bin:/gnu/store/d9fihp3jkqblimnpx8dl1dykms48l1m1-samtools-1.12/bin:/gnu/store/v6f44zccwh9z5zk3pjlywjybbi8n2hjh-tar-1.32/bin:/gnu/store/ncydgq2znms5n1d2k5yqshhf58nsixwv-gzip-1.10/bin:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/bin:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/bin:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/bin:/gnu/store/n4n560pfvvw50a9369axw5vj5rrqfj1n-diffutils-3.7/bin:/gnu/store/cd5qf3kcnlq35p9k392pjdpdzpsnds70-patch-2.7.6/bin:/gnu/store/hic7snhayfl7m6cpfqqr73nmm19bpqkg-findutils-4.7.0/bin:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/bin:/gnu/store/ishk7fswcs4gkwcp8mh788z4mvvl9bxh-sed-4.8/bin:/gnu/store/bhs4rj58v8j1narb2454raan2ps38xd8-grep-3.4/bin:/gnu/store/57xj5gcy1jbl9ai2lnrqnpr0dald9i65-coreutils-8.32/bin:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/bin:/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin:/gnu/store/mpa04aq8lblbcviyxywxcsb1zbi0mf39-ld-wrapper-0/bin:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/bin:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/bin:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/sbin:/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/bin:/gnu/store/k40w2mw0kmhp82p9gvgx5y5h7q84jz8y-python-xlrd-1.2.0/bin:/gnu/store/irmw6agiw3adqphw8c3m19g31fw1yf34-gobject-introspection-1.62.0/bin:/gnu/store/ijx1f68ss358cmqa2gqb2mc7zw9cdxcq-htslib-1.9/bin:/gnu/store/kakspf0hkf7pnyq581bh0pq3r3bjfrvx-cairo-1.16.0/bin:/gnu/store/3x2kak8abb6z2klch72kfff2qxzv00pj-libpng-1.6.37/bin:/gnu/store/j3f5hx6yvhlj3sapiipigkwg05b49nwn-freetype-2.10.4/bin:/gnu/store/skxf0dmvgrw84pb2yzi1g1hwn0swv9kx-fontconfig-2.13.1/bin:/gnu/store/g8jsacrrdyfxdskw9yagj02dn0i5xj5b-libselinux-3.0/sbin:/gnu/store/imh5xxqw10dql4crlngbbjh4r24raf4j-expat-2.2.9/bin:/gnu/store/8nh0hbrr8iaz6qkwavcnzi0824f3xb68-libsepol-3.0/bin' environment variable `PYTHONPATH' set to `/gnu/store/kd16r2qb0s7g9ixc6agn485nhbgakdzj-python-numpy-1.17.3/lib/python3.8/site-packages:/gnu/store/amad2jigvx6rwcn467g4g7v3n5r1jcb6-python-pandas-1.0.5/lib/python3.8/site-packages:/gnu/store/1ggy0jz9lpnzixj94hi5knx3m1hcj7f2-python-cython-0.29.22/lib/python3.8/site-packages:/gnu/store/hjmz8ymac939ribn7g3jkgms4dk2az3a-python-six-1.14.0/lib/python3.8/site-packages:/gnu/store/436410968f8mpdlsn1pw456mpgwmbh4m-python-pytest-5.3.5/lib/python3.8/site-packages:/gnu/store/nzn3ihp02lgryvz8rlb0ng2szvm362qd-python-psutil-5.8.0/lib/python3.8/site-packages:/gnu/store/71qji35y3abx4kr2nmsn9pp20apc908g-python-matplotlib-3.1.2/lib/python3.8/site-packages:/gnu/store/l55xrj9dgjrbp18cdm6g7fl2i7hnzcmw-python-pysam-0.15.1/lib/python3.8/site-packages:/gnu/store/s5nfa0iffzdz5la9753i8jmdlziyl0rs-python-pyyaml-5.3.1/lib/python3.8/site-packages:/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/lib/python3.8/site-packages:/gnu/store/k40w2mw0kmhp82p9gvgx5y5h7q84jz8y-python-xlrd-1.2.0/lib/python3.8/site-packages:/gnu/store/747z33isnpcw3n4h2d5qz9dvzcrk49y5-python-dateutil-2.8.1/lib/python3.8/site-packages:/gnu/store/3f1fglk0f6jym9r0zfaf7vqjn6gx6js5-python-pytz-2021.1/lib/python3.8/site-packages:/gnu/store/k2rj6y8ywhb3nymq4rwpyzfd1r9r90rq-python-openpyxl-3.0.5/lib/python3.8/site-packages:/gnu/store/6z2ri6yzpagh5pc32m8gn95lzarxkims-python-jinja2-2.11.2/lib/python3.8/site-packages:/gnu/store/xjiplzqxr084ximm4wdhyx3wzf8nxvv0-python-wcwidth-0.1.8/lib/python3.8/site-packages:/gnu/store/wqw4gzwl3nh9z9kzzs46zjw5v4dlb3hy-python-six-bootstrap-1.14.0/lib/python3.8/site-packages:/gnu/store/avj1ma4bvfjnw86pd9ys64899b627f0x-python-py-1.8.1/lib/python3.8/site-packages:/gnu/store/nqi6xqx8h2fxldi3xbigkc24wfzzsy5j-python-pluggy-0.13.1/lib/python3.8/site-packages:/gnu/store/fnhij2sl3yx4048ij4jnx4lfikw43v78-python-packaging-bootstrap-20.0/lib/python3.8/site-packages:/gnu/store/bpbpmqwx2zvrw2h5k8c8fwk91xmzfym3-python-more-itertools-8.2.0/lib/python3.8/site-packages:/gnu/store/jjqhdlpg9bx3j0l4z52zm5xzrpscd0yk-python-attrs-bootstrap-19.3.0/lib/python3.8/site-packages:/gnu/store/v166fk97g9np2rb27m2kgfbnivlfxcgn-python-atomicwrites-1.3.0/lib/python3.8/site-packages:/gnu/store/qqgx08zxcgmkh23icrwmnlfcky97d36f-python-cairocffi-1.2.0/lib/python3.8/site-packages:/gnu/store/180s697y50pvfly42xphwngd0669jlwj-python-pycairo-1.19.1/lib/python3.8/site-packages:/gnu/store/8k372lg0nbjn070zj4nlnaw2zwqi7sv2-python-pillow-8.1.1/lib/python3.8/site-packages:/gnu/store/2g6gfgfxk4z5gn6hlqgvix4fmk39yavf-python-3.8.2-tk/lib/python3.8/site-packages:/gnu/store/frj6yg9316ihw5k7yxm3gndzfv0yy3br-python-pygobject-3.34.0/lib/python3.8/site-packages:/gnu/store/69lzz2dp87f896843jj05mw5z4hd9my2-python-pyparsing-2.4.6/lib/python3.8/site-packages:/gnu/store/hsmq1drh329jj6gapp1cdm49601wpiyg-python-kiwisolver-1.0.1/lib/python3.8/site-packages:/gnu/store/p96cj23yln0s45kj6zy4pvghdh1ppbrh-python-cycler-0.10.0/lib/python3.8/site-packages:/gnu/store/sq5ryxl1wzrib5ni6qmhyaxs3va97ihh-python-jdcal-1.4/lib/python3.8/site-packages:/gnu/store/ynq62g962801s21gj5r7n8vljrqqc8ym-python-et-xmlfile-1.0.1/lib/python3.8/site-packages:/gnu/store/r6jy13vsfb1fjlrhr43xdnz56d614aw6-python-markupsafe-1.1.1/lib/python3.8/site-packages:/gnu/store/8s2c7wm2zj1v1z007qwkd6j23x2ddyw6-python-xcffib-0.6.0/lib/python3.8/site-packages:/gnu/store/19yshim76656h8zw81fn8bc5ypvfav89-python-olefile-0.46/lib/python3.8/site-packages:/gnu/store/j3k8ah697pg289zg7j9ix4a53i94liw4-python-cffi-1.14.4/lib/python3.8/site-packages:/gnu/store/k08j1silv8zxfglz3mb5q7ngmya9cv39-python-pycparser-2.20/lib/python3.8/site-packages' environment variable `BASH_LOADABLES_PATH' unset environment variable `C_INCLUDE_PATH' set to `/gnu/store/d9fihp3jkqblimnpx8dl1dykms48l1m1-samtools-1.12/include:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/include:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/include:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/include:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/include:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/include:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/include:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/include:/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/include:/gnu/store/180s697y50pvfly42xphwngd0669jlwj-python-pycairo-1.19.1/include:/gnu/store/irmw6agiw3adqphw8c3m19g31fw1yf34-gobject-introspection-1.62.0/include:/gnu/store/frj6yg9316ihw5k7yxm3gndzfv0yy3br-python-pygobject-3.34.0/include:/gnu/store/ijx1f68ss358cmqa2gqb2mc7zw9cdxcq-htslib-1.9/include:/gnu/store/gfapkk5c6hvl1d94m4sqnhn7f9l5gqyh-linux-libre-headers-5.4.20/include:/gnu/store/kakspf0hkf7pnyq581bh0pq3r3bjfrvx-cairo-1.16.0/include:/gnu/store/bw15z9kh9c65ycc2vbhl2izwfwfva7p1-libffi-3.3/include:/gnu/store/qzj0j8lv58fyr7dbsjj4fzjcqvgmkwzb-glib-2.62.6/include:/gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/include:/gnu/store/xwl0p4m34bcan0v9vkjkyzwi6znsv4dm-pixman-0.38.4/include:/gnu/store/wc157mk1w9nqgwgpv0mwca018hflv0w8-libxrender-0.9.10/include:/gnu/store/8rajfq6hncpmm4448fcha8d7d25x3ziq-libxext-1.3.4/include:/gnu/store/zyx5mhkpfyssvwljhpv5qv1iz1g2aqq3-libx11-1.6.10/include:/gnu/store/3x2kak8abb6z2klch72kfff2qxzv00pj-libpng-1.6.37/include:/gnu/store/j3f5hx6yvhlj3sapiipigkwg05b49nwn-freetype-2.10.4/include:/gnu/store/skxf0dmvgrw84pb2yzi1g1hwn0swv9kx-fontconfig-2.13.1/include:/gnu/store/g8jsacrrdyfxdskw9yagj02dn0i5xj5b-libselinux-3.0/include:/gnu/store/a45p39mgqvfd8kjwibyr0q42k1mw7gmf-util-linux-2.35.1-lib/include:/gnu/store/k0aqiy7yx8n28dvm3f0a04ka5sd8y950-pcre-8.44/include:/gnu/store/wxl57nkbqgamfp73b7v62kk3f1hiv0cz-xorgproto-2019.2/include:/gnu/store/lv92cmzqjpb8mxygpqdvh0mkkkfi9vmz-libxcb-1.14/include:/gnu/store/imh5xxqw10dql4crlngbbjh4r24raf4j-expat-2.2.9/include:/gnu/store/8nh0hbrr8iaz6qkwavcnzi0824f3xb68-libsepol-3.0/include:/gnu/store/6cdl970wcv4jhvpgbh8sdj54a5gwhmwj-libxdmcp-1.1.3/include:/gnu/store/h7sy4hr7arjknbyy1aq0xwv6fksnzw9n-libxau-1.0.9/include' environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/d9fihp3jkqblimnpx8dl1dykms48l1m1-samtools-1.12/include:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/include:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/include:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/include:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/include:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/include:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/include:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include/c++:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/include:/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/include:/gnu/store/180s697y50pvfly42xphwngd0669jlwj-python-pycairo-1.19.1/include:/gnu/store/irmw6agiw3adqphw8c3m19g31fw1yf34-gobject-introspection-1.62.0/include:/gnu/store/frj6yg9316ihw5k7yxm3gndzfv0yy3br-python-pygobject-3.34.0/include:/gnu/store/ijx1f68ss358cmqa2gqb2mc7zw9cdxcq-htslib-1.9/include:/gnu/store/gfapkk5c6hvl1d94m4sqnhn7f9l5gqyh-linux-libre-headers-5.4.20/include:/gnu/store/kakspf0hkf7pnyq581bh0pq3r3bjfrvx-cairo-1.16.0/include:/gnu/store/bw15z9kh9c65ycc2vbhl2izwfwfva7p1-libffi-3.3/include:/gnu/store/qzj0j8lv58fyr7dbsjj4fzjcqvgmkwzb-glib-2.62.6/include:/gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/include:/gnu/store/xwl0p4m34bcan0v9vkjkyzwi6znsv4dm-pixman-0.38.4/include:/gnu/store/wc157mk1w9nqgwgpv0mwca018hflv0w8-libxrender-0.9.10/include:/gnu/store/8rajfq6hncpmm4448fcha8d7d25x3ziq-libxext-1.3.4/include:/gnu/store/zyx5mhkpfyssvwljhpv5qv1iz1g2aqq3-libx11-1.6.10/include:/gnu/store/3x2kak8abb6z2klch72kfff2qxzv00pj-libpng-1.6.37/include:/gnu/store/j3f5hx6yvhlj3sapiipigkwg05b49nwn-freetype-2.10.4/include:/gnu/store/skxf0dmvgrw84pb2yzi1g1hwn0swv9kx-fontconfig-2.13.1/include:/gnu/store/g8jsacrrdyfxdskw9yagj02dn0i5xj5b-libselinux-3.0/include:/gnu/store/a45p39mgqvfd8kjwibyr0q42k1mw7gmf-util-linux-2.35.1-lib/include:/gnu/store/k0aqiy7yx8n28dvm3f0a04ka5sd8y950-pcre-8.44/include:/gnu/store/wxl57nkbqgamfp73b7v62kk3f1hiv0cz-xorgproto-2019.2/include:/gnu/store/lv92cmzqjpb8mxygpqdvh0mkkkfi9vmz-libxcb-1.14/include:/gnu/store/imh5xxqw10dql4crlngbbjh4r24raf4j-expat-2.2.9/include:/gnu/store/8nh0hbrr8iaz6qkwavcnzi0824f3xb68-libsepol-3.0/include:/gnu/store/6cdl970wcv4jhvpgbh8sdj54a5gwhmwj-libxdmcp-1.1.3/include:/gnu/store/h7sy4hr7arjknbyy1aq0xwv6fksnzw9n-libxau-1.0.9/include' environment variable `LIBRARY_PATH' set to `/gnu/store/kd16r2qb0s7g9ixc6agn485nhbgakdzj-python-numpy-1.17.3/lib:/gnu/store/amad2jigvx6rwcn467g4g7v3n5r1jcb6-python-pandas-1.0.5/lib:/gnu/store/1ggy0jz9lpnzixj94hi5knx3m1hcj7f2-python-cython-0.29.22/lib:/gnu/store/hjmz8ymac939ribn7g3jkgms4dk2az3a-python-six-1.14.0/lib:/gnu/store/436410968f8mpdlsn1pw456mpgwmbh4m-python-pytest-5.3.5/lib:/gnu/store/nzn3ihp02lgryvz8rlb0ng2szvm362qd-python-psutil-5.8.0/lib:/gnu/store/d9fihp3jkqblimnpx8dl1dykms48l1m1-samtools-1.12/lib:/gnu/store/71qji35y3abx4kr2nmsn9pp20apc908g-python-matplotlib-3.1.2/lib:/gnu/store/l55xrj9dgjrbp18cdm6g7fl2i7hnzcmw-python-pysam-0.15.1/lib:/gnu/store/s5nfa0iffzdz5la9753i8jmdlziyl0rs-python-pyyaml-5.3.1/lib:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/lib:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/lib:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/lib:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/lib:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/lib:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/lib:/gnu/store/s3dcqzwqaakv1yx37by9chksdbkgih17-glibc-2.31-static/lib:/gnu/store/hwcky7446s952w0mwchhmm211ll07zrq-glibc-utf8-locales-2.31/lib:/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/lib:/gnu/store/k40w2mw0kmhp82p9gvgx5y5h7q84jz8y-python-xlrd-1.2.0/lib:/gnu/store/747z33isnpcw3n4h2d5qz9dvzcrk49y5-python-dateutil-2.8.1/lib:/gnu/store/3f1fglk0f6jym9r0zfaf7vqjn6gx6js5-python-pytz-2021.1/lib:/gnu/store/k2rj6y8ywhb3nymq4rwpyzfd1r9r90rq-python-openpyxl-3.0.5/lib:/gnu/store/6z2ri6yzpagh5pc32m8gn95lzarxkims-python-jinja2-2.11.2/lib:/gnu/store/xjiplzqxr084ximm4wdhyx3wzf8nxvv0-python-wcwidth-0.1.8/lib:/gnu/store/wqw4gzwl3nh9z9kzzs46zjw5v4dlb3hy-python-six-bootstrap-1.14.0/lib:/gnu/store/avj1ma4bvfjnw86pd9ys64899b627f0x-python-py-1.8.1/lib:/gnu/store/nqi6xqx8h2fxldi3xbigkc24wfzzsy5j-python-pluggy-0.13.1/lib:/gnu/store/fnhij2sl3yx4048ij4jnx4lfikw43v78-python-packaging-bootstrap-20.0/lib:/gnu/store/bpbpmqwx2zvrw2h5k8c8fwk91xmzfym3-python-more-itertools-8.2.0/lib:/gnu/store/jjqhdlpg9bx3j0l4z52zm5xzrpscd0yk-python-attrs-bootstrap-19.3.0/lib:/gnu/store/v166fk97g9np2rb27m2kgfbnivlfxcgn-python-atomicwrites-1.3.0/lib:/gnu/store/qqgx08zxcgmkh23icrwmnlfcky97d36f-python-cairocffi-1.2.0/lib:/gnu/store/180s697y50pvfly42xphwngd0669jlwj-python-pycairo-1.19.1/lib:/gnu/store/8k372lg0nbjn070zj4nlnaw2zwqi7sv2-python-pillow-8.1.1/lib:/gnu/store/2g6gfgfxk4z5gn6hlqgvix4fmk39yavf-python-3.8.2-tk/lib:/gnu/store/irmw6agiw3adqphw8c3m19g31fw1yf34-gobject-introspection-1.62.0/lib:/gnu/store/frj6yg9316ihw5k7yxm3gndzfv0yy3br-python-pygobject-3.34.0/lib:/gnu/store/69lzz2dp87f896843jj05mw5z4hd9my2-python-pyparsing-2.4.6/lib:/gnu/store/hsmq1drh329jj6gapp1cdm49601wpiyg-python-kiwisolver-1.0.1/lib:/gnu/store/p96cj23yln0s45kj6zy4pvghdh1ppbrh-python-cycler-0.10.0/lib:/gnu/store/ijx1f68ss358cmqa2gqb2mc7zw9cdxcq-htslib-1.9/lib:/gnu/store/sq5ryxl1wzrib5ni6qmhyaxs3va97ihh-python-jdcal-1.4/lib:/gnu/store/ynq62g962801s21gj5r7n8vljrqqc8ym-python-et-xmlfile-1.0.1/lib:/gnu/store/r6jy13vsfb1fjlrhr43xdnz56d614aw6-python-markupsafe-1.1.1/lib:/gnu/store/8s2c7wm2zj1v1z007qwkd6j23x2ddyw6-python-xcffib-0.6.0/lib:/gnu/store/kakspf0hkf7pnyq581bh0pq3r3bjfrvx-cairo-1.16.0/lib:/gnu/store/19yshim76656h8zw81fn8bc5ypvfav89-python-olefile-0.46/lib:/gnu/store/bw15z9kh9c65ycc2vbhl2izwfwfva7p1-libffi-3.3/lib:/gnu/store/qzj0j8lv58fyr7dbsjj4fzjcqvgmkwzb-glib-2.62.6/lib:/gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/lib:/gnu/store/j3k8ah697pg289zg7j9ix4a53i94liw4-python-cffi-1.14.4/lib:/gnu/store/xwl0p4m34bcan0v9vkjkyzwi6znsv4dm-pixman-0.38.4/lib:/gnu/store/wc157mk1w9nqgwgpv0mwca018hflv0w8-libxrender-0.9.10/lib:/gnu/store/8rajfq6hncpmm4448fcha8d7d25x3ziq-libxext-1.3.4/lib:/gnu/store/zyx5mhkpfyssvwljhpv5qv1iz1g2aqq3-libx11-1.6.10/lib:/gnu/store/3x2kak8abb6z2klch72kfff2qxzv00pj-libpng-1.6.37/lib:/gnu/store/j3f5hx6yvhlj3sapiipigkwg05b49nwn-freetype-2.10.4/lib:/gnu/store/skxf0dmvgrw84pb2yzi1g1hwn0swv9kx-fontconfig-2.13.1/lib:/gnu/store/g8jsacrrdyfxdskw9yagj02dn0i5xj5b-libselinux-3.0/lib:/gnu/store/a45p39mgqvfd8kjwibyr0q42k1mw7gmf-util-linux-2.35.1-lib/lib:/gnu/store/k0aqiy7yx8n28dvm3f0a04ka5sd8y950-pcre-8.44/lib:/gnu/store/k08j1silv8zxfglz3mb5q7ngmya9cv39-python-pycparser-2.20/lib:/gnu/store/lv92cmzqjpb8mxygpqdvh0mkkkfi9vmz-libxcb-1.14/lib:/gnu/store/imh5xxqw10dql4crlngbbjh4r24raf4j-expat-2.2.9/lib:/gnu/store/8nh0hbrr8iaz6qkwavcnzi0824f3xb68-libsepol-3.0/lib:/gnu/store/lc8irxnwazq340ygkbqh0ask446jzy9k-util-macros-1.19.2/lib:/gnu/store/6cdl970wcv4jhvpgbh8sdj54a5gwhmwj-libxdmcp-1.1.3/lib:/gnu/store/h7sy4hr7arjknbyy1aq0xwv6fksnzw9n-libxau-1.0.9/lib:/gnu/store/klk98l8czl05lvanrr7xl7a9hksac4ak-libpthread-stubs-0.4/lib' environment variable `GUIX_LOCPATH' set to `/gnu/store/hwcky7446s952w0mwchhmm211ll07zrq-glibc-utf8-locales-2.31/lib/locale' environment variable `GI_TYPELIB_PATH' set to `/gnu/store/irmw6agiw3adqphw8c3m19g31fw1yf34-gobject-introspection-1.62.0/lib/girepository-1.0' environment variable `XDG_DATA_DIRS' set to `/gnu/store/kd16r2qb0s7g9ixc6agn485nhbgakdzj-python-numpy-1.17.3/share:/gnu/store/amad2jigvx6rwcn467g4g7v3n5r1jcb6-python-pandas-1.0.5/share:/gnu/store/1ggy0jz9lpnzixj94hi5knx3m1hcj7f2-python-cython-0.29.22/share:/gnu/store/5afkbxcgzlx43x80zvqhvr1mgx8s9mnw-kentutils-302.0.0/share:/gnu/store/hjmz8ymac939ribn7g3jkgms4dk2az3a-python-six-1.14.0/share:/gnu/store/436410968f8mpdlsn1pw456mpgwmbh4m-python-pytest-5.3.5/share:/gnu/store/nzn3ihp02lgryvz8rlb0ng2szvm362qd-python-psutil-5.8.0/share:/gnu/store/xk0a4yimxbv2h5sm61vm31whzw8hs6k5-bedtools-2.30.0/share:/gnu/store/d9fihp3jkqblimnpx8dl1dykms48l1m1-samtools-1.12/share:/gnu/store/71qji35y3abx4kr2nmsn9pp20apc908g-python-matplotlib-3.1.2/share:/gnu/store/l55xrj9dgjrbp18cdm6g7fl2i7hnzcmw-python-pysam-0.15.1/share:/gnu/store/s5nfa0iffzdz5la9753i8jmdlziyl0rs-python-pyyaml-5.3.1/share:/gnu/store/v6f44zccwh9z5zk3pjlywjybbi8n2hjh-tar-1.32/share:/gnu/store/ncydgq2znms5n1d2k5yqshhf58nsixwv-gzip-1.10/share:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/share:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/share:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/share:/gnu/store/n4n560pfvvw50a9369axw5vj5rrqfj1n-diffutils-3.7/share:/gnu/store/cd5qf3kcnlq35p9k392pjdpdzpsnds70-patch-2.7.6/share:/gnu/store/hic7snhayfl7m6cpfqqr73nmm19bpqkg-findutils-4.7.0/share:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/share:/gnu/store/ishk7fswcs4gkwcp8mh788z4mvvl9bxh-sed-4.8/share:/gnu/store/bhs4rj58v8j1narb2454raan2ps38xd8-grep-3.4/share:/gnu/store/57xj5gcy1jbl9ai2lnrqnpr0dald9i65-coreutils-8.32/share:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/share:/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/share:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/share:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/share:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/share:/gnu/store/s3dcqzwqaakv1yx37by9chksdbkgih17-glibc-2.31-static/share:/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/share:/gnu/store/k40w2mw0kmhp82p9gvgx5y5h7q84jz8y-python-xlrd-1.2.0/share:/gnu/store/747z33isnpcw3n4h2d5qz9dvzcrk49y5-python-dateutil-2.8.1/share:/gnu/store/3f1fglk0f6jym9r0zfaf7vqjn6gx6js5-python-pytz-2021.1/share:/gnu/store/k2rj6y8ywhb3nymq4rwpyzfd1r9r90rq-python-openpyxl-3.0.5/share:/gnu/store/6z2ri6yzpagh5pc32m8gn95lzarxkims-python-jinja2-2.11.2/share:/gnu/store/xjiplzqxr084ximm4wdhyx3wzf8nxvv0-python-wcwidth-0.1.8/share:/gnu/store/wqw4gzwl3nh9z9kzzs46zjw5v4dlb3hy-python-six-bootstrap-1.14.0/share:/gnu/store/avj1ma4bvfjnw86pd9ys64899b627f0x-python-py-1.8.1/share:/gnu/store/nqi6xqx8h2fxldi3xbigkc24wfzzsy5j-python-pluggy-0.13.1/share:/gnu/store/fnhij2sl3yx4048ij4jnx4lfikw43v78-python-packaging-bootstrap-20.0/share:/gnu/store/bpbpmqwx2zvrw2h5k8c8fwk91xmzfym3-python-more-itertools-8.2.0/share:/gnu/store/jjqhdlpg9bx3j0l4z52zm5xzrpscd0yk-python-attrs-bootstrap-19.3.0/share:/gnu/store/v166fk97g9np2rb27m2kgfbnivlfxcgn-python-atomicwrites-1.3.0/share:/gnu/store/qqgx08zxcgmkh23icrwmnlfcky97d36f-python-cairocffi-1.2.0/share:/gnu/store/180s697y50pvfly42xphwngd0669jlwj-python-pycairo-1.19.1/share:/gnu/store/8k372lg0nbjn070zj4nlnaw2zwqi7sv2-python-pillow-8.1.1/share:/gnu/store/2g6gfgfxk4z5gn6hlqgvix4fmk39yavf-python-3.8.2-tk/share:/gnu/store/irmw6agiw3adqphw8c3m19g31fw1yf34-gobject-introspection-1.62.0/share:/gnu/store/69lzz2dp87f896843jj05mw5z4hd9my2-python-pyparsing-2.4.6/share:/gnu/store/hsmq1drh329jj6gapp1cdm49601wpiyg-python-kiwisolver-1.0.1/share:/gnu/store/p96cj23yln0s45kj6zy4pvghdh1ppbrh-python-cycler-0.10.0/share:/gnu/store/ijx1f68ss358cmqa2gqb2mc7zw9cdxcq-htslib-1.9/share:/gnu/store/gfapkk5c6hvl1d94m4sqnhn7f9l5gqyh-linux-libre-headers-5.4.20/share:/gnu/store/sq5ryxl1wzrib5ni6qmhyaxs3va97ihh-python-jdcal-1.4/share:/gnu/store/r6jy13vsfb1fjlrhr43xdnz56d614aw6-python-markupsafe-1.1.1/share:/gnu/store/8s2c7wm2zj1v1z007qwkd6j23x2ddyw6-python-xcffib-0.6.0/share:/gnu/store/kakspf0hkf7pnyq581bh0pq3r3bjfrvx-cairo-1.16.0/share:/gnu/store/19yshim76656h8zw81fn8bc5ypvfav89-python-olefile-0.46/share:/gnu/store/bw15z9kh9c65ycc2vbhl2izwfwfva7p1-libffi-3.3/share:/gnu/store/qzj0j8lv58fyr7dbsjj4fzjcqvgmkwzb-glib-2.62.6/share:/gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/share:/gnu/store/j3k8ah697pg289zg7j9ix4a53i94liw4-python-cffi-1.14.4/share:/gnu/store/xwl0p4m34bcan0v9vkjkyzwi6znsv4dm-pixman-0.38.4/share:/gnu/store/wc157mk1w9nqgwgpv0mwca018hflv0w8-libxrender-0.9.10/share:/gnu/store/8rajfq6hncpmm4448fcha8d7d25x3ziq-libxext-1.3.4/share:/gnu/store/zyx5mhkpfyssvwljhpv5qv1iz1g2aqq3-libx11-1.6.10/share:/gnu/store/3x2kak8abb6z2klch72kfff2qxzv00pj-libpng-1.6.37/share:/gnu/store/j3f5hx6yvhlj3sapiipigkwg05b49nwn-freetype-2.10.4/share:/gnu/store/skxf0dmvgrw84pb2yzi1g1hwn0swv9kx-fontconfig-2.13.1/share:/gnu/store/g8jsacrrdyfxdskw9yagj02dn0i5xj5b-libselinux-3.0/share:/gnu/store/a45p39mgqvfd8kjwibyr0q42k1mw7gmf-util-linux-2.35.1-lib/share:/gnu/store/k0aqiy7yx8n28dvm3f0a04ka5sd8y950-pcre-8.44/share:/gnu/store/k08j1silv8zxfglz3mb5q7ngmya9cv39-python-pycparser-2.20/share:/gnu/store/wxl57nkbqgamfp73b7v62kk3f1hiv0cz-xorgproto-2019.2/share:/gnu/store/lv92cmzqjpb8mxygpqdvh0mkkkfi9vmz-libxcb-1.14/share:/gnu/store/imh5xxqw10dql4crlngbbjh4r24raf4j-expat-2.2.9/share:/gnu/store/8nh0hbrr8iaz6qkwavcnzi0824f3xb68-libsepol-3.0/share:/gnu/store/lc8irxnwazq340ygkbqh0ask446jzy9k-util-macros-1.19.2/share:/gnu/store/6cdl970wcv4jhvpgbh8sdj54a5gwhmwj-libxdmcp-1.1.3/share:/gnu/store/h7sy4hr7arjknbyy1aq0xwv6fksnzw9n-libxau-1.0.9/share:/gnu/store/klk98l8czl05lvanrr7xl7a9hksac4ak-libpthread-stubs-0.4/share' environment variable `GIO_EXTRA_MODULES' unset phase `set-paths' succeeded after 0.5 seconds starting phase `install-locale' using 'en_US.utf8' locale for category "LC_ALL" phase `install-locale' succeeded after 0.0 seconds starting phase `unpack' pybedtools-0.8.2/ pybedtools-0.8.2/LICENSE.txt pybedtools-0.8.2/PKG-INFO pybedtools-0.8.2/README.rst pybedtools-0.8.2/docs/ pybedtools-0.8.2/docs/Makefile pybedtools-0.8.2/docs/make.bat pybedtools-0.8.2/ez_setup.py pybedtools-0.8.2/pybedtools/ pybedtools-0.8.2/pybedtools/_Window.pyx pybedtools-0.8.2/pybedtools/__init__.py pybedtools-0.8.2/pybedtools/bedtool.py pybedtools-0.8.2/pybedtools/cbedtools.cpp pybedtools-0.8.2/pybedtools/cbedtools.pxd pybedtools-0.8.2/pybedtools/cbedtools.pyx pybedtools-0.8.2/pybedtools/contrib/ pybedtools-0.8.2/pybedtools/contrib/__init__.py pybedtools-0.8.2/pybedtools/contrib/bigbed.py pybedtools-0.8.2/pybedtools/contrib/bigwig.py pybedtools-0.8.2/pybedtools/contrib/intersection_matrix.py pybedtools-0.8.2/pybedtools/contrib/long_range_interaction.py pybedtools-0.8.2/pybedtools/contrib/plotting.py pybedtools-0.8.2/pybedtools/contrib/venn_maker.py pybedtools-0.8.2/pybedtools/featurefuncs.cpp pybedtools-0.8.2/pybedtools/featurefuncs.pyx pybedtools-0.8.2/pybedtools/filenames.py pybedtools-0.8.2/pybedtools/genome_registry.py pybedtools-0.8.2/pybedtools/helpers.py pybedtools-0.8.2/pybedtools/include/ pybedtools-0.8.2/pybedtools/include/bedFile.cpp pybedtools-0.8.2/pybedtools/include/bedFile.h pybedtools-0.8.2/pybedtools/include/fileType.cpp pybedtools-0.8.2/pybedtools/include/fileType.h pybedtools-0.8.2/pybedtools/include/gzstream.cpp pybedtools-0.8.2/pybedtools/include/gzstream.h pybedtools-0.8.2/pybedtools/include/lineFileUtilities.h pybedtools-0.8.2/pybedtools/logger.py pybedtools-0.8.2/pybedtools/parallel.py pybedtools-0.8.2/pybedtools/paths.py pybedtools-0.8.2/pybedtools/settings.py pybedtools-0.8.2/pybedtools/stats.py pybedtools-0.8.2/pybedtools/test/ pybedtools-0.8.2/pybedtools/test/__init__.py pybedtools-0.8.2/pybedtools/test/data/ pybedtools-0.8.2/pybedtools/test/data/1000genomes-example.vcf pybedtools-0.8.2/pybedtools/test/data/1000genomes-example.vcf.gz pybedtools-0.8.2/pybedtools/test/data/164.gtf pybedtools-0.8.2/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed pybedtools-0.8.2/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed pybedtools-0.8.2/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed pybedtools-0.8.2/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed pybedtools-0.8.2/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed pybedtools-0.8.2/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed pybedtools-0.8.2/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed pybedtools-0.8.2/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed pybedtools-0.8.2/pybedtools/test/data/__init__.py pybedtools-0.8.2/pybedtools/test/data/a.bed pybedtools-0.8.2/pybedtools/test/data/a.bed.gz pybedtools-0.8.2/pybedtools/test/data/a.bed.gz.tbi pybedtools-0.8.2/pybedtools/test/data/a.igv_script pybedtools-0.8.2/pybedtools/test/data/a.links.html pybedtools-0.8.2/pybedtools/test/data/b.bed pybedtools-0.8.2/pybedtools/test/data/bedpe.bed pybedtools-0.8.2/pybedtools/test/data/bedpe2.bed pybedtools-0.8.2/pybedtools/test/data/c.gff pybedtools-0.8.2/pybedtools/test/data/d.gff pybedtools-0.8.2/pybedtools/test/data/democonfig.yaml pybedtools-0.8.2/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz pybedtools-0.8.2/pybedtools/test/data/dm3-chr2L-5M.gff.gz pybedtools-0.8.2/pybedtools/test/data/exons.gff pybedtools-0.8.2/pybedtools/test/data/expand_test.bed pybedtools-0.8.2/pybedtools/test/data/gdc.1.100.bam pybedtools-0.8.2/pybedtools/test/data/gdc.1.100.bam.bai pybedtools-0.8.2/pybedtools/test/data/gdc.50.200.bam pybedtools-0.8.2/pybedtools/test/data/gdc.50.200.bam.bai pybedtools-0.8.2/pybedtools/test/data/gdc.bam pybedtools-0.8.2/pybedtools/test/data/gdc.bed pybedtools-0.8.2/pybedtools/test/data/gdc.cram pybedtools-0.8.2/pybedtools/test/data/gdc.gff pybedtools-0.8.2/pybedtools/test/data/gdc.gff.gz pybedtools-0.8.2/pybedtools/test/data/gdc.othersort.bam pybedtools-0.8.2/pybedtools/test/data/gdc.sorted.bam pybedtools-0.8.2/pybedtools/test/data/gdc.sorted.bam.bai pybedtools-0.8.2/pybedtools/test/data/genome.fa pybedtools-0.8.2/pybedtools/test/data/hg19.gff pybedtools-0.8.2/pybedtools/test/data/hg38-base.bed pybedtools-0.8.2/pybedtools/test/data/hg38-problem.bed pybedtools-0.8.2/pybedtools/test/data/issue319.bed pybedtools-0.8.2/pybedtools/test/data/issue319.out.bed pybedtools-0.8.2/pybedtools/test/data/issue319.vcf.gz pybedtools-0.8.2/pybedtools/test/data/issue_121.bam pybedtools-0.8.2/pybedtools/test/data/m1.bed pybedtools-0.8.2/pybedtools/test/data/mm9.bed12 pybedtools-0.8.2/pybedtools/test/data/multibamcov_test.bed pybedtools-0.8.2/pybedtools/test/data/reads.bam pybedtools-0.8.2/pybedtools/test/data/rmsk.hg18.chr21.small.bed pybedtools-0.8.2/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz pybedtools-0.8.2/pybedtools/test/data/small.bam pybedtools-0.8.2/pybedtools/test/data/small.fastq pybedtools-0.8.2/pybedtools/test/data/snps.bed.gz pybedtools-0.8.2/pybedtools/test/data/tag_test1.bed pybedtools-0.8.2/pybedtools/test/data/tag_test2.bed pybedtools-0.8.2/pybedtools/test/data/test.fa pybedtools-0.8.2/pybedtools/test/data/test.fa.fai pybedtools-0.8.2/pybedtools/test/data/test_bedpe.bed pybedtools-0.8.2/pybedtools/test/data/test_peaks.bed pybedtools-0.8.2/pybedtools/test/data/test_tsses.bed pybedtools-0.8.2/pybedtools/test/data/v.vcf pybedtools-0.8.2/pybedtools/test/data/vcf-stderr-test.bed pybedtools-0.8.2/pybedtools/test/data/vcf-stderr-test.vcf pybedtools-0.8.2/pybedtools/test/data/venn.b.bed pybedtools-0.8.2/pybedtools/test/data/venn.c.bed pybedtools-0.8.2/pybedtools/test/data/x.bam pybedtools-0.8.2/pybedtools/test/data/x.bed pybedtools-0.8.2/pybedtools/test/data/y.bam pybedtools-0.8.2/pybedtools/test/gchart-expected.png pybedtools-0.8.2/pybedtools/test/genomepy_integration.py pybedtools-0.8.2/pybedtools/test/mpl-expected.png pybedtools-0.8.2/pybedtools/test/prevent_open_file_regression pybedtools-0.8.2/pybedtools/test/regression_tests.py pybedtools-0.8.2/pybedtools/test/test_1.py pybedtools-0.8.2/pybedtools/test/test_cases.yaml pybedtools-0.8.2/pybedtools/test/test_cbedtools.py pybedtools-0.8.2/pybedtools/test/test_contrib.py pybedtools-0.8.2/pybedtools/test/test_gzip_support.py pybedtools-0.8.2/pybedtools/test/test_helpers.py pybedtools-0.8.2/pybedtools/test/test_issues.py pybedtools-0.8.2/pybedtools/test/test_iter.py pybedtools-0.8.2/pybedtools/test/test_len_leak.py pybedtools-0.8.2/pybedtools/test/test_merge215.yaml pybedtools-0.8.2/pybedtools/test/test_merge227.yaml pybedtools-0.8.2/pybedtools/test/test_pathlib.py pybedtools-0.8.2/pybedtools/test/test_shuffle215.yaml pybedtools-0.8.2/pybedtools/test/test_shuffle227.yaml pybedtools-0.8.2/pybedtools/test/tfuncs.py pybedtools-0.8.2/pybedtools/version.py pybedtools-0.8.2/setup.cfg pybedtools-0.8.2/setup.py phase `unpack' succeeded after 0.4 seconds starting phase `remove-cython-generated-files' phase `remove-cython-generated-files' succeeded after 0.0 seconds starting phase `generate-cython-extensions' running cythonize Compiling pybedtools/cbedtools.pyx because it changed. Compiling pybedtools/featurefuncs.pyx because it changed. [1/2] Cythonizing pybedtools/cbedtools.pyx [2/2] Cythonizing pybedtools/featurefuncs.pyx /gnu/store/1ggy0jz9lpnzixj94hi5knx3m1hcj7f2-python-cython-0.29.22/lib/python3.8/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/guix-build-python-pybedtools-0.8.2.drv-0/pybedtools-0.8.2/pybedtools/cbedtools.pxd tree = Parsing.p_module(s, pxd, full_module_name) /gnu/store/1ggy0jz9lpnzixj94hi5knx3m1hcj7f2-python-cython-0.29.22/lib/python3.8/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/guix-build-python-pybedtools-0.8.2.drv-0/pybedtools-0.8.2/pybedtools/featurefuncs.pyx tree = Parsing.p_module(s, pxd, full_module_name) phase `generate-cython-extensions' succeeded after 7.9 seconds starting phase `disable-broken-tests' phase `disable-broken-tests' succeeded after 0.0 seconds starting phase `ensure-no-mtimes-pre-1980' phase `ensure-no-mtimes-pre-1980' succeeded after 0.0 seconds starting phase `enable-bytecode-determinism' phase `enable-bytecode-determinism' succeeded after 0.0 seconds starting phase `patch-usr-bin-file' phase `patch-usr-bin-file' succeeded after 0.0 seconds starting phase `patch-source-shebangs' patch-shebang: ./ez_setup.py: changing `/usr/bin/env python' to `/gnu/store/f8s95qc6dfhl0r45m70hczw5zip0xjxq-python-wrapper-3.8.2/bin/python' patch-shebang: ./pybedtools/test/prevent_open_file_regression: changing `/usr/bin/env python' to `/gnu/store/f8s95qc6dfhl0r45m70hczw5zip0xjxq-python-wrapper-3.8.2/bin/python' patch-shebang: ./pybedtools/test/test_cbedtools.py: changing `/usr/bin/env python' to `/gnu/store/f8s95qc6dfhl0r45m70hczw5zip0xjxq-python-wrapper-3.8.2/bin/python' phase `patch-source-shebangs' succeeded after 0.0 seconds starting phase `patch-generated-file-shebangs' phase `patch-generated-file-shebangs' succeeded after 0.0 seconds starting phase `build' running "python setup.py" with command "build" and parameters () running build running build_py creating build creating build/lib.linux-x86_64-3.8 creating build/lib.linux-x86_64-3.8/pybedtools copying pybedtools/filenames.py -> build/lib.linux-x86_64-3.8/pybedtools copying pybedtools/bedtool.py -> build/lib.linux-x86_64-3.8/pybedtools copying pybedtools/logger.py -> build/lib.linux-x86_64-3.8/pybedtools copying pybedtools/version.py -> build/lib.linux-x86_64-3.8/pybedtools copying pybedtools/__init__.py -> build/lib.linux-x86_64-3.8/pybedtools copying pybedtools/paths.py -> build/lib.linux-x86_64-3.8/pybedtools copying pybedtools/stats.py -> build/lib.linux-x86_64-3.8/pybedtools copying pybedtools/genome_registry.py -> build/lib.linux-x86_64-3.8/pybedtools copying pybedtools/parallel.py -> build/lib.linux-x86_64-3.8/pybedtools copying pybedtools/settings.py -> build/lib.linux-x86_64-3.8/pybedtools copying pybedtools/helpers.py -> build/lib.linux-x86_64-3.8/pybedtools creating build/lib.linux-x86_64-3.8/pybedtools/test copying pybedtools/test/test_len_leak.py -> build/lib.linux-x86_64-3.8/pybedtools/test copying pybedtools/test/tfuncs.py -> build/lib.linux-x86_64-3.8/pybedtools/test copying pybedtools/test/test_helpers.py -> build/lib.linux-x86_64-3.8/pybedtools/test copying pybedtools/test/genomepy_integration.py -> build/lib.linux-x86_64-3.8/pybedtools/test copying pybedtools/test/test_issues.py -> build/lib.linux-x86_64-3.8/pybedtools/test copying pybedtools/test/test_pathlib.py -> build/lib.linux-x86_64-3.8/pybedtools/test copying pybedtools/test/test_contrib.py -> build/lib.linux-x86_64-3.8/pybedtools/test copying pybedtools/test/test_gzip_support.py -> build/lib.linux-x86_64-3.8/pybedtools/test copying pybedtools/test/test_cbedtools.py -> build/lib.linux-x86_64-3.8/pybedtools/test copying pybedtools/test/__init__.py -> build/lib.linux-x86_64-3.8/pybedtools/test copying pybedtools/test/test_1.py -> build/lib.linux-x86_64-3.8/pybedtools/test copying pybedtools/test/test_iter.py -> build/lib.linux-x86_64-3.8/pybedtools/test copying pybedtools/test/regression_tests.py -> build/lib.linux-x86_64-3.8/pybedtools/test creating build/lib.linux-x86_64-3.8/pybedtools/contrib copying pybedtools/contrib/long_range_interaction.py -> build/lib.linux-x86_64-3.8/pybedtools/contrib copying pybedtools/contrib/bigbed.py -> build/lib.linux-x86_64-3.8/pybedtools/contrib copying pybedtools/contrib/venn_maker.py -> build/lib.linux-x86_64-3.8/pybedtools/contrib copying pybedtools/contrib/bigwig.py -> build/lib.linux-x86_64-3.8/pybedtools/contrib copying pybedtools/contrib/intersection_matrix.py -> build/lib.linux-x86_64-3.8/pybedtools/contrib copying pybedtools/contrib/__init__.py -> build/lib.linux-x86_64-3.8/pybedtools/contrib copying pybedtools/contrib/plotting.py -> build/lib.linux-x86_64-3.8/pybedtools/contrib creating build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/__init__.py -> build/lib.linux-x86_64-3.8/pybedtools/test/data running egg_info creating pybedtools.egg-info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt writing manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest file 'pybedtools.egg-info/SOURCES.txt' writing manifest file 'pybedtools.egg-info/SOURCES.txt' copying pybedtools/cbedtools.cpp -> build/lib.linux-x86_64-3.8/pybedtools copying pybedtools/featurefuncs.cpp -> build/lib.linux-x86_64-3.8/pybedtools creating build/lib.linux-x86_64-3.8/pybedtools/include copying pybedtools/include/bedFile.cpp -> build/lib.linux-x86_64-3.8/pybedtools/include copying pybedtools/include/fileType.cpp -> build/lib.linux-x86_64-3.8/pybedtools/include copying pybedtools/include/gzstream.cpp -> build/lib.linux-x86_64-3.8/pybedtools/include copying pybedtools/test/data/test_peaks.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/issue319.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/b.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/gdc.1.100.bam.bai -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/y.bam -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/bedpe2.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/x.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/snps.bed.gz -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/exons.gff -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/gdc.othersort.bam -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/test.fa -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/reads.bam -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/hg38-problem.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/bedpe.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/small.bam -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/tag_test2.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/a.links.html -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/vcf-stderr-test.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/v.vcf -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/tag_test1.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/gdc.gff.gz -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/hg19.gff -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/a.bed.gz.tbi -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/test_bedpe.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/1000genomes-example.vcf -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/hg38-base.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/gdc.sorted.bam.bai -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/gdc.50.200.bam -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/issue_121.bam -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/test.fa.fai -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/venn.b.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/gdc.bam -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/gdc.1.100.bam -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/d.gff -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/mm9.bed12 -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/1000genomes-example.vcf.gz -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/164.gtf -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/expand_test.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/m1.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/venn.c.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/gdc.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/genome.fa -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/gdc.cram -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/gdc.gff -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/a.bed.gz -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/gdc.50.200.bam.bai -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/small.fastq -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/issue319.out.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/gdc.sorted.bam -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/a.igv_script -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/test_tsses.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/issue319.vcf.gz -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/c.gff -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/multibamcov_test.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/x.bam -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/vcf-stderr-test.vcf -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/a.bed -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/test/data/democonfig.yaml -> build/lib.linux-x86_64-3.8/pybedtools/test/data copying pybedtools/featurefuncs.pyx -> build/lib.linux-x86_64-3.8/pybedtools copying pybedtools/_Window.pyx -> build/lib.linux-x86_64-3.8/pybedtools copying pybedtools/cbedtools.pyx -> build/lib.linux-x86_64-3.8/pybedtools copying pybedtools/cbedtools.pxd -> build/lib.linux-x86_64-3.8/pybedtools running build_ext building 'pybedtools.cbedtools' extension creating build/temp.linux-x86_64-3.8 creating build/temp.linux-x86_64-3.8/pybedtools creating build/temp.linux-x86_64-3.8/pybedtools/include gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -Ipybedtools/include/ -I/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/include/python3.8 -c pybedtools/cbedtools.cpp -o build/temp.linux-x86_64-3.8/pybedtools/cbedtools.o gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -Ipybedtools/include/ -I/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/include/python3.8 -c pybedtools/include/gzstream.cpp -o build/temp.linux-x86_64-3.8/pybedtools/include/gzstream.o gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -Ipybedtools/include/ -I/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/include/python3.8 -c pybedtools/include/fileType.cpp -o build/temp.linux-x86_64-3.8/pybedtools/include/fileType.o gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -Ipybedtools/include/ -I/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/include/python3.8 -c pybedtools/include/bedFile.cpp -o build/temp.linux-x86_64-3.8/pybedtools/include/bedFile.o g++ -pthread -shared -Wl,-rpath=/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/lib build/temp.linux-x86_64-3.8/pybedtools/cbedtools.o build/temp.linux-x86_64-3.8/pybedtools/include/gzstream.o build/temp.linux-x86_64-3.8/pybedtools/include/fileType.o build/temp.linux-x86_64-3.8/pybedtools/include/bedFile.o -L/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/lib -lstdc++ -lz -o build/lib.linux-x86_64-3.8/pybedtools/cbedtools.cpython-38-x86_64-linux-gnu.so building 'pybedtools.featurefuncs' extension gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -Ipybedtools/include/ -I/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/include/python3.8 -c pybedtools/featurefuncs.cpp -o build/temp.linux-x86_64-3.8/pybedtools/featurefuncs.o gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -Ipybedtools/include/ -I/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/include/python3.8 -c pybedtools/include/gzstream.cpp -o build/temp.linux-x86_64-3.8/pybedtools/include/gzstream.o gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -Ipybedtools/include/ -I/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/include/python3.8 -c pybedtools/include/fileType.cpp -o build/temp.linux-x86_64-3.8/pybedtools/include/fileType.o gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -Ipybedtools/include/ -I/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/include/python3.8 -c pybedtools/include/bedFile.cpp -o build/temp.linux-x86_64-3.8/pybedtools/include/bedFile.o g++ -pthread -shared -Wl,-rpath=/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/lib build/temp.linux-x86_64-3.8/pybedtools/featurefuncs.o build/temp.linux-x86_64-3.8/pybedtools/include/gzstream.o build/temp.linux-x86_64-3.8/pybedtools/include/fileType.o build/temp.linux-x86_64-3.8/pybedtools/include/bedFile.o -L/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/lib -lstdc++ -lz -o build/lib.linux-x86_64-3.8/pybedtools/featurefuncs.cpython-38-x86_64-linux-gnu.so phase `build' succeeded after 28.6 seconds starting phase `install' running "python setup.py" with command "install" and parameters ("--prefix=/gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2" "--single-version-externally-managed" "--root=/") running install running build running build_py copying pybedtools/version.py -> build/lib.linux-x86_64-3.8/pybedtools running egg_info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt reading manifest file 'pybedtools.egg-info/SOURCES.txt' writing manifest file 'pybedtools.egg-info/SOURCES.txt' running build_ext running install_lib creating /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2 creating /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib creating /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8 creating /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages creating /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools copying build/lib.linux-x86_64-3.8/pybedtools/filenames.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools copying build/lib.linux-x86_64-3.8/pybedtools/cbedtools.cpython-38-x86_64-linux-gnu.so -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools creating /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test copying build/lib.linux-x86_64-3.8/pybedtools/test/test_len_leak.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test creating /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/test_peaks.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/issue319.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/b.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/gdc.1.100.bam.bai -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/y.bam -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/bedpe2.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/x.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/snps.bed.gz -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/exons.gff -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/gdc.othersort.bam -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/test.fa -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/reads.bam -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/hg38-problem.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/bedpe.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/small.bam -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/tag_test2.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/a.links.html -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/vcf-stderr-test.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/v.vcf -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/tag_test1.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/gdc.gff.gz -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/hg19.gff -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/a.bed.gz.tbi -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/test_bedpe.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/1000genomes-example.vcf -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/hg38-base.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/gdc.sorted.bam.bai -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/gdc.50.200.bam -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/issue_121.bam -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/test.fa.fai -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/venn.b.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/gdc.bam -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/gdc.1.100.bam -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/d.gff -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/mm9.bed12 -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/1000genomes-example.vcf.gz -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/164.gtf -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/expand_test.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/m1.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/venn.c.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/gdc.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/genome.fa -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/gdc.cram -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/gdc.gff -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/__init__.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/a.bed.gz -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/gdc.50.200.bam.bai -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/small.fastq -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/issue319.out.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/gdc.sorted.bam -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/a.igv_script -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/test_tsses.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/issue319.vcf.gz -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/c.gff -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/multibamcov_test.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/x.bam -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/vcf-stderr-test.vcf -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/a.bed -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/data/democonfig.yaml -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data copying build/lib.linux-x86_64-3.8/pybedtools/test/tfuncs.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test copying build/lib.linux-x86_64-3.8/pybedtools/test/test_helpers.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test copying build/lib.linux-x86_64-3.8/pybedtools/test/genomepy_integration.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test copying build/lib.linux-x86_64-3.8/pybedtools/test/test_issues.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test copying build/lib.linux-x86_64-3.8/pybedtools/test/test_pathlib.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test copying build/lib.linux-x86_64-3.8/pybedtools/test/test_contrib.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test copying build/lib.linux-x86_64-3.8/pybedtools/test/test_gzip_support.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test copying build/lib.linux-x86_64-3.8/pybedtools/test/test_cbedtools.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test copying build/lib.linux-x86_64-3.8/pybedtools/test/__init__.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test copying build/lib.linux-x86_64-3.8/pybedtools/test/test_1.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test copying build/lib.linux-x86_64-3.8/pybedtools/test/test_iter.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test copying build/lib.linux-x86_64-3.8/pybedtools/test/regression_tests.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test copying build/lib.linux-x86_64-3.8/pybedtools/bedtool.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools copying build/lib.linux-x86_64-3.8/pybedtools/featurefuncs.pyx -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools copying build/lib.linux-x86_64-3.8/pybedtools/logger.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools creating /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/contrib copying build/lib.linux-x86_64-3.8/pybedtools/contrib/long_range_interaction.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/contrib copying build/lib.linux-x86_64-3.8/pybedtools/contrib/bigbed.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/contrib copying build/lib.linux-x86_64-3.8/pybedtools/contrib/venn_maker.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/contrib copying build/lib.linux-x86_64-3.8/pybedtools/contrib/bigwig.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/contrib copying build/lib.linux-x86_64-3.8/pybedtools/contrib/intersection_matrix.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/contrib copying build/lib.linux-x86_64-3.8/pybedtools/contrib/__init__.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/contrib copying build/lib.linux-x86_64-3.8/pybedtools/contrib/plotting.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/contrib copying build/lib.linux-x86_64-3.8/pybedtools/_Window.pyx -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools copying build/lib.linux-x86_64-3.8/pybedtools/featurefuncs.cpp -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools copying build/lib.linux-x86_64-3.8/pybedtools/version.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools copying build/lib.linux-x86_64-3.8/pybedtools/__init__.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools copying build/lib.linux-x86_64-3.8/pybedtools/cbedtools.cpp -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools copying build/lib.linux-x86_64-3.8/pybedtools/paths.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools copying build/lib.linux-x86_64-3.8/pybedtools/stats.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools copying build/lib.linux-x86_64-3.8/pybedtools/genome_registry.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools copying build/lib.linux-x86_64-3.8/pybedtools/featurefuncs.cpython-38-x86_64-linux-gnu.so -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools copying build/lib.linux-x86_64-3.8/pybedtools/parallel.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools creating /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/include copying build/lib.linux-x86_64-3.8/pybedtools/include/gzstream.cpp -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/include copying build/lib.linux-x86_64-3.8/pybedtools/include/fileType.cpp -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/include copying build/lib.linux-x86_64-3.8/pybedtools/include/bedFile.cpp -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/include copying build/lib.linux-x86_64-3.8/pybedtools/cbedtools.pxd -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools copying build/lib.linux-x86_64-3.8/pybedtools/settings.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools copying build/lib.linux-x86_64-3.8/pybedtools/helpers.py -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools copying build/lib.linux-x86_64-3.8/pybedtools/cbedtools.pyx -> /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/filenames.py to filenames.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/test_len_leak.py to test_len_leak.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/data/__init__.py to __init__.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/tfuncs.py to tfuncs.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/test_helpers.py to test_helpers.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/genomepy_integration.py to genomepy_integration.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/test_issues.py to test_issues.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/test_pathlib.py to test_pathlib.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/test_contrib.py to test_contrib.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/test_gzip_support.py to test_gzip_support.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/test_cbedtools.py to test_cbedtools.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/__init__.py to __init__.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/test_1.py to test_1.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/test_iter.py to test_iter.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/test/regression_tests.py to regression_tests.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/bedtool.py to bedtool.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/logger.py to logger.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/contrib/long_range_interaction.py to long_range_interaction.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/contrib/bigbed.py to bigbed.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/contrib/venn_maker.py to venn_maker.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/contrib/bigwig.py to bigwig.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/contrib/intersection_matrix.py to intersection_matrix.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/contrib/__init__.py to __init__.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/contrib/plotting.py to plotting.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/version.py to version.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/__init__.py to __init__.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/paths.py to paths.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/stats.py to stats.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/genome_registry.py to genome_registry.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/parallel.py to parallel.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/settings.py to settings.cpython-38.pyc byte-compiling /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools/helpers.py to helpers.cpython-38.pyc running install_egg_info Copying pybedtools.egg-info to /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib/python3.8/site-packages/pybedtools-0.8.2-py3.8.egg-info running install_scripts phase `install' succeeded after 1.0 seconds starting phase `wrap' find-files: /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/bin: No such file or directory find-files: /gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/sbin: No such file or directory phase `wrap' succeeded after 0.0 seconds starting phase `check' `pybedtools/test/test_len_leak.py' -> `/tmp/test/test_len_leak.py' `pybedtools/test/tfuncs.py' -> `/tmp/test/tfuncs.py' `pybedtools/test/test_helpers.py' -> `/tmp/test/test_helpers.py' `pybedtools/test/gchart-expected.png' -> `/tmp/test/gchart-expected.png' `pybedtools/test/genomepy_integration.py' -> `/tmp/test/genomepy_integration.py' `pybedtools/test/test_issues.py' -> `/tmp/test/test_issues.py' `pybedtools/test/test_shuffle215.yaml' -> `/tmp/test/test_shuffle215.yaml' `pybedtools/test/test_pathlib.py' -> `/tmp/test/test_pathlib.py' `pybedtools/test/prevent_open_file_regression' -> `/tmp/test/prevent_open_file_regression' `pybedtools/test/test_contrib.py' -> `/tmp/test/test_contrib.py' `pybedtools/test/test_gzip_support.py' -> `/tmp/test/test_gzip_support.py' `pybedtools/test/test_cbedtools.py' -> `/tmp/test/test_cbedtools.py' `pybedtools/test/mpl-expected.png' -> `/tmp/test/mpl-expected.png' `pybedtools/test/__init__.py' -> `/tmp/test/__init__.py' `pybedtools/test/test_1.py' -> `/tmp/test/test_1.py' `pybedtools/test/test_merge227.yaml' -> `/tmp/test/test_merge227.yaml' `pybedtools/test/test_iter.py' -> `/tmp/test/test_iter.py' `pybedtools/test/test_shuffle227.yaml' -> `/tmp/test/test_shuffle227.yaml' `pybedtools/test/test_cases.yaml' -> `/tmp/test/test_cases.yaml' `pybedtools/test/regression_tests.py' -> `/tmp/test/regression_tests.py' `pybedtools/test/test_merge215.yaml' -> `/tmp/test/test_merge215.yaml' `pybedtools/test/data/test_peaks.bed' -> `/tmp/test/data/test_peaks.bed' `pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz' -> `/tmp/test/data/rmsk.hg18.chr21.small.bed.gz' `pybedtools/test/data/issue319.bed' -> `/tmp/test/data/issue319.bed' `pybedtools/test/data/b.bed' -> `/tmp/test/data/b.bed' `pybedtools/test/data/gdc.1.100.bam.bai' -> `/tmp/test/data/gdc.1.100.bam.bai' `pybedtools/test/data/y.bam' -> `/tmp/test/data/y.bam' `pybedtools/test/data/bedpe2.bed' -> `/tmp/test/data/bedpe2.bed' `pybedtools/test/data/x.bed' -> `/tmp/test/data/x.bed' `pybedtools/test/data/snps.bed.gz' -> `/tmp/test/data/snps.bed.gz' `pybedtools/test/data/exons.gff' -> `/tmp/test/data/exons.gff' `pybedtools/test/data/gdc.othersort.bam' -> `/tmp/test/data/gdc.othersort.bam' `pybedtools/test/data/test.fa' -> `/tmp/test/data/test.fa' `pybedtools/test/data/reads.bam' -> `/tmp/test/data/reads.bam' `pybedtools/test/data/hg38-problem.bed' -> `/tmp/test/data/hg38-problem.bed' `pybedtools/test/data/dm3-chr2L-5M.gff.gz' -> `/tmp/test/data/dm3-chr2L-5M.gff.gz' `pybedtools/test/data/bedpe.bed' -> `/tmp/test/data/bedpe.bed' `pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed' -> `/tmp/test/data/BEAF_Mbn2_Bushey_2009.bed' `pybedtools/test/data/CTCF_Kc_Bushey_2009.bed' -> `/tmp/test/data/CTCF_Kc_Bushey_2009.bed' `pybedtools/test/data/small.bam' -> `/tmp/test/data/small.bam' `pybedtools/test/data/rmsk.hg18.chr21.small.bed' -> `/tmp/test/data/rmsk.hg18.chr21.small.bed' `pybedtools/test/data/tag_test2.bed' -> `/tmp/test/data/tag_test2.bed' `pybedtools/test/data/a.links.html' -> `/tmp/test/data/a.links.html' `pybedtools/test/data/vcf-stderr-test.bed' -> `/tmp/test/data/vcf-stderr-test.bed' `pybedtools/test/data/v.vcf' -> `/tmp/test/data/v.vcf' `pybedtools/test/data/tag_test1.bed' -> `/tmp/test/data/tag_test1.bed' `pybedtools/test/data/gdc.gff.gz' -> `/tmp/test/data/gdc.gff.gz' `pybedtools/test/data/hg19.gff' -> `/tmp/test/data/hg19.gff' `pybedtools/test/data/a.bed.gz.tbi' -> `/tmp/test/data/a.bed.gz.tbi' `pybedtools/test/data/test_bedpe.bed' -> `/tmp/test/data/test_bedpe.bed' `pybedtools/test/data/1000genomes-example.vcf' -> `/tmp/test/data/1000genomes-example.vcf' `pybedtools/test/data/hg38-base.bed' -> `/tmp/test/data/hg38-base.bed' `pybedtools/test/data/gdc.sorted.bam.bai' -> `/tmp/test/data/gdc.sorted.bam.bai' `pybedtools/test/data/Cp190_Kc_Bushey_2009.bed' -> `/tmp/test/data/Cp190_Kc_Bushey_2009.bed' `pybedtools/test/data/gdc.50.200.bam' -> `/tmp/test/data/gdc.50.200.bam' `pybedtools/test/data/issue_121.bam' -> `/tmp/test/data/issue_121.bam' `pybedtools/test/data/test.fa.fai' -> `/tmp/test/data/test.fa.fai' `pybedtools/test/data/SuHw_Kc_Bushey_2009.bed' -> `/tmp/test/data/SuHw_Kc_Bushey_2009.bed' `pybedtools/test/data/venn.b.bed' -> `/tmp/test/data/venn.b.bed' `pybedtools/test/data/gdc.bam' -> `/tmp/test/data/gdc.bam' `pybedtools/test/data/gdc.1.100.bam' -> `/tmp/test/data/gdc.1.100.bam' `pybedtools/test/data/d.gff' -> `/tmp/test/data/d.gff' `pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed' -> `/tmp/test/data/CTCF_Mbn2_Bushey_2009.bed' `pybedtools/test/data/mm9.bed12' -> `/tmp/test/data/mm9.bed12' `pybedtools/test/data/1000genomes-example.vcf.gz' -> `/tmp/test/data/1000genomes-example.vcf.gz' `pybedtools/test/data/164.gtf' -> `/tmp/test/data/164.gtf' `pybedtools/test/data/expand_test.bed' -> `/tmp/test/data/expand_test.bed' `pybedtools/test/data/m1.bed' -> `/tmp/test/data/m1.bed' `pybedtools/test/data/venn.c.bed' -> `/tmp/test/data/venn.c.bed' `pybedtools/test/data/gdc.bed' -> `/tmp/test/data/gdc.bed' `pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed' -> `/tmp/test/data/SuHw_Mbn2_Bushey_2009.bed' `pybedtools/test/data/genome.fa' -> `/tmp/test/data/genome.fa' `pybedtools/test/data/gdc.cram' -> `/tmp/test/data/gdc.cram' `pybedtools/test/data/gdc.gff' -> `/tmp/test/data/gdc.gff' `pybedtools/test/data/__init__.py' -> `/tmp/test/data/__init__.py' `pybedtools/test/data/a.bed.gz' -> `/tmp/test/data/a.bed.gz' `pybedtools/test/data/gdc.50.200.bam.bai' -> `/tmp/test/data/gdc.50.200.bam.bai' `pybedtools/test/data/small.fastq' -> `/tmp/test/data/small.fastq' `pybedtools/test/data/issue319.out.bed' -> `/tmp/test/data/issue319.out.bed' `pybedtools/test/data/BEAF_Kc_Bushey_2009.bed' -> `/tmp/test/data/BEAF_Kc_Bushey_2009.bed' `pybedtools/test/data/gdc.sorted.bam' -> `/tmp/test/data/gdc.sorted.bam' `pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed' -> `/tmp/test/data/Cp190_Mbn2_Bushey_2009.bed' `pybedtools/test/data/a.igv_script' -> `/tmp/test/data/a.igv_script' `pybedtools/test/data/test_tsses.bed' -> `/tmp/test/data/test_tsses.bed' `pybedtools/test/data/issue319.vcf.gz' -> `/tmp/test/data/issue319.vcf.gz' `pybedtools/test/data/c.gff' -> `/tmp/test/data/c.gff' `pybedtools/test/data/multibamcov_test.bed' -> `/tmp/test/data/multibamcov_test.bed' `pybedtools/test/data/x.bam' -> `/tmp/test/data/x.bam' `pybedtools/test/data/vcf-stderr-test.vcf' -> `/tmp/test/data/vcf-stderr-test.vcf' `pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz' -> `/tmp/test/data/dm3-chr2L-5M-invalid.gff.gz' `pybedtools/test/data/a.bed' -> `/tmp/test/data/a.bed' `pybedtools/test/data/democonfig.yaml' -> `/tmp/test/data/democonfig.yaml' ============================= test session starts ============================== platform linux -- Python 3.8.2, pytest-5.3.5, py-1.8.1, pluggy-0.13.1 -- /gnu/store/f8s95qc6dfhl0r45m70hczw5zip0xjxq-python-wrapper-3.8.2/bin/python cachedir: .pytest_cache hypothesis profile 'default' -> database=DirectoryBasedExampleDatabase('/tmp/test/.hypothesis/examples') rootdir: /tmp/test plugins: hypothesis-5.4.1 collecting ... collected 500 items test_1.py::test_interval_index PASSED [ 0%] test_1.py::test_tuple_creation PASSED [ 0%] test_1.py::test_tabix PASSED [ 0%] test_1.py::test_tabix_intervals PASSED [ 0%] test_1.py::test_stream PASSED [ 1%] test_1.py::test_stream_of_stream PASSED [ 1%] test_1.py::test_generator PASSED [ 1%] test_1.py::test_stream_of_generator PASSED [ 1%] test_1.py::test_many_files PASSED [ 1%] test_1.py::test_malformed PASSED [ 2%] test_1.py::test_remove_invalid PASSED [ 2%] test_1.py::test_create_from_list_long_features PASSED [ 2%] test_1.py::test_iterator PASSED [ 2%] test_1.py::test_indexing PASSED [ 2%] test_1.py::test_file_type PASSED [ 3%] test_1.py::test_introns PASSED [ 3%] test_1.py::test_slop PASSED [ 3%] test_1.py::test_closest PASSED [ 3%] test_1.py::test_sequence PASSED [ 3%] test_1.py::test_add_subtract PASSED [ 4%] test_1.py::test_subset PASSED [ 4%] test_1.py::test_eq PASSED [ 4%] test_1.py::test_hash PASSED [ 4%] test_1.py::test_count_bed PASSED [ 4%] test_1.py::test_feature_centers PASSED [ 5%] test_1.py::test_bedtool_creation PASSED [ 5%] test_1.py::test_special_methods PASSED [ 5%] test_1.py::test_field_count PASSED [ 5%] test_1.py::test_repr_and_printing PASSED [ 5%] test_1.py::test_cut PASSED [ 6%] test_1.py::test_filter PASSED [ 6%] test_1.py::test_random_intersection PASSED [ 6%] test_1.py::test_cat PASSED [ 6%] test_1.py::test_randomstats PASSED [ 6%] test_1.py::test_gff_stuff PASSED [ 7%] test_1.py::test_name PASSED [ 7%] test_1.py::test_flatten PASSED [ 7%] test_1.py::test_history_step PASSED [ 7%] test_1.py::test_kwargs PASSED [ 7%] test_1.py::test_is_gzip PASSED [ 8%] test_1.py::test_gzip PASSED [ 8%] test_1.py::test_bam_bedtool_creation PASSED [ 8%] test_1.py::test_print_abam PASSED [ 8%] test_1.py::test_bam_iter PASSED [ 8%] test_1.py::test_bam_interval PASSED [ 9%] test_1.py::test_bam_regression PASSED [ 9%] test_1.py::test_sam_filetype PASSED [ 9%] test_1.py::test_bam_to_sam_to_bam2 PASSED [ 9%] test_1.py::test_bam_to_sam_to_bam PASSED [ 9%] test_1.py::test_bam_filetype PASSED [ 10%] test_1.py::test_bam_header PASSED [ 10%] test_1.py::test_output_kwarg PASSED [ 10%] test_1.py::test_copy PASSED [ 10%] test_1.py::test_pickleable PASSED [ 10%] test_1.py::test_split PASSED [ 11%] test_1.py::test_additional_args PASSED [ 11%] test_1.py::test_tss PASSED [ 11%] test_1.py::test_extend_fields PASSED [ 11%] test_1.py::test_gff2bed PASSED [ 11%] test_1.py::test_add_color PASSED [ 12%] test_1.py::test_any_hits PASSED [ 12%] test_1.py::test_all_hits PASSED [ 12%] test_1.py::test_count_hits PASSED [ 12%] test_1.py::test_multi_intersect PASSED [ 12%] test_1.py::test_union_bedgraphs PASSED [ 13%] test_1.py::test_window_maker PASSED [ 13%] test_1.py::test_random PASSED [ 13%] test_1.py::test_links PASSED [ 13%] test_1.py::test_igv PASSED [ 13%] test_1.py::test_bam_to_fastq XFAIL [ 14%] test_1.py::test_gtf_gff_attrs PASSED [ 14%] test_1.py::test_jaccard PASSED [ 14%] test_1.py::test_reldist XFAIL [ 14%] test_1.py::test_remote_bam_raises_exception_when_file_doesnt_exist PASSED [ 14%] test_1.py::test_remote_bam XFAIL [ 15%] test_1.py::test_empty_overloaded_ops PASSED [ 15%] test_1.py::test_to_dataframe PASSED [ 15%] test_1.py::test_tail PASSED [ 15%] test_1.py::test_fisher PASSED [ 15%] test_1.py::test_zero_len_boolean PASSED [ 16%] test_1.py::test_chromsizes_in_5prime_3prime PASSED [ 16%] test_1.py::test_new_head PASSED [ 16%] test_cbedtools.py::IntervalFileTest::testFileType PASSED [ 16%] test_cbedtools.py::IntervalFileTest::testOverlaps PASSED [ 16%] test_cbedtools.py::IntervalFileTest::testRichCmp PASSED [ 17%] test_cbedtools.py::IntervalFileTest::testStrands PASSED [ 17%] test_cbedtools.py::IntervalTest::testAppend PASSED [ 17%] test_cbedtools.py::IntervalTest::testEnds PASSED [ 17%] test_cbedtools.py::IntervalTest::testGetItem PASSED [ 17%] test_cbedtools.py::IntervalTest::testGetItemNegative PASSED [ 18%] test_cbedtools.py::IntervalTest::testGetItemSlice PASSED [ 18%] test_cbedtools.py::IntervalTest::testGetItemSliceNone PASSED [ 18%] test_cbedtools.py::IntervalTest::testGetItemString PASSED [ 18%] test_cbedtools.py::IntervalTest::testLengths PASSED [ 18%] test_cbedtools.py::IntervalTest::testName PASSED [ 19%] test_cbedtools.py::IntervalTest::testSetAttrs PASSED [ 19%] test_cbedtools.py::IntervalTest::testSetItem PASSED [ 19%] test_cbedtools.py::IntervalTest::testSetItemString PASSED [ 19%] test_cbedtools.py::IntervalTest::testStart PASSED [ 19%] test_cbedtools.py::IntervalTest::testStrand PASSED [ 20%] test_cbedtools.py::IntervalFileGzTest::testFileType PASSED [ 20%] test_cbedtools.py::IntervalFileGzTest::testOverlaps PASSED [ 20%] test_cbedtools.py::IntervalFileGzTest::testRichCmp PASSED [ 20%] test_cbedtools.py::IntervalFileGzTest::testStrands PASSED [ 20%] test_cbedtools.py::IntervalFileGFFTest::testAppend PASSED [ 21%] test_cbedtools.py::IntervalFileGFFTest::testEnds PASSED [ 21%] test_cbedtools.py::IntervalFileGFFTest::testGetItem PASSED [ 21%] test_cbedtools.py::IntervalFileGFFTest::testGetItemNegative PASSED [ 21%] test_cbedtools.py::IntervalFileGFFTest::testGetItemSlice PASSED [ 21%] test_cbedtools.py::IntervalFileGFFTest::testGetItemSliceNone PASSED [ 22%] test_cbedtools.py::IntervalFileGFFTest::testGetItemString PASSED [ 22%] test_cbedtools.py::IntervalFileGFFTest::testLengths PASSED [ 22%] test_cbedtools.py::IntervalFileGFFTest::testName PASSED [ 22%] test_cbedtools.py::IntervalFileGFFTest::testSetAttrs PASSED [ 22%] test_cbedtools.py::IntervalFileGFFTest::testSetItem PASSED [ 23%] test_cbedtools.py::IntervalFileGFFTest::testSetItemString PASSED [ 23%] test_cbedtools.py::IntervalFileGFFTest::testStart PASSED [ 23%] test_cbedtools.py::IntervalFileGFFTest::testStrand PASSED [ 23%] test_cbedtools.py::test_zero_length_regression PASSED [ 23%] test_cbedtools.py::test_issue_123 PASSED [ 24%] test_cbedtools.py::test_missing_files PASSED [ 24%] test_contrib.py::test_cleaned_intersect PASSED [ 24%] test_contrib.py::test_venn_maker_3way_1empty PASSED [ 24%] 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's': False} a=filename b=gzip] PASSED [ 37%] test_iter.py::test_all[intersect: {'a': 'a.bed', 'b': 'b.bed', 's': False} a=generator b=filename] PASSED [ 37%] test_iter.py::test_all[intersect: {'a': 'a.bed', 'b': 'b.bed', 's': False} a=generator b=stream] PASSED [ 37%] test_iter.py::test_all[intersect: {'a': 'a.bed', 'b': 'b.bed', 's': False} a=generator b=gzip] PASSED [ 37%] test_iter.py::test_all[intersect: {'a': 'a.bed', 'b': 'b.bed', 's': False} a=stream b=filename] PASSED [ 37%] test_iter.py::test_all[intersect: {'a': 'a.bed', 'b': 'b.bed', 's': False} a=stream b=generator] PASSED [ 38%] test_iter.py::test_all[intersect: {'a': 'a.bed', 'b': 'b.bed', 's': False} a=stream b=gzip] PASSED [ 38%] test_iter.py::test_all[intersect: {'a': 'a.bed', 'b': 'b.bed', 's': False} a=gzip b=filename] PASSED [ 38%] test_iter.py::test_all[intersect: {'a': 'a.bed', 'b': 'b.bed', 's': False} a=gzip b=generator] PASSED [ 38%] test_iter.py::test_all[intersect: {'a': 'a.bed', 'b': 'b.bed', 's': False} 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'bed': True, 'v': True} a=filename b=generator] PASSED [ 49%] test_iter.py::test_all[intersect: {'abam': 'gdc.cram', 'b': 'gdc.gff', 'bed': True, 'v': True} a=filename b=stream] PASSED [ 49%] test_iter.py::test_all[intersect: {'abam': 'gdc.cram', 'b': 'gdc.gff', 'bed': True, 'v': True} a=filename b=gzip] PASSED [ 49%] test_iter.py::test_all[intersect: {'abam': 'gdc.bam', 'b': 'gdc.gff', 'bed': True, 'u': True} a=filename b=generator] PASSED [ 49%] test_iter.py::test_all[intersect: {'abam': 'gdc.bam', 'b': 'gdc.gff', 'bed': True, 'u': True} a=filename b=stream] PASSED [ 50%] test_iter.py::test_all[intersect: {'abam': 'gdc.bam', 'b': 'gdc.gff', 'bed': True, 'u': True} a=filename b=gzip] PASSED [ 50%] test_iter.py::test_all[intersect: {'abam': 'gdc.cram', 'b': 'gdc.gff', 'bed': True, 'u': True} a=filename b=generator] PASSED [ 50%] test_iter.py::test_all[intersect: {'abam': 'gdc.cram', 'b': 'gdc.gff', 'bed': True, 'u': True} a=filename b=stream] PASSED [ 50%] 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{'a': 'a.bed', 'b': 'b.bed'} a=gzip b=stream] PASSED [ 54%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True} a=filename b=generator] PASSED [ 54%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True} a=filename b=stream] PASSED [ 54%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True} a=filename b=gzip] PASSED [ 55%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True} a=generator b=filename] PASSED [ 55%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True} a=generator b=stream] PASSED [ 55%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True} a=generator b=gzip] PASSED [ 55%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True} a=stream b=filename] PASSED [ 55%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True} a=stream b=generator] PASSED [ 56%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True} a=stream b=gzip] PASSED [ 56%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True} a=gzip b=filename] PASSED [ 56%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True} a=gzip b=generator] PASSED [ 56%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True} a=gzip b=stream] PASSED [ 56%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True, 'f': 0.13} a=filename b=generator] PASSED [ 57%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True, 'f': 0.13} a=filename b=stream] PASSED [ 57%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True, 'f': 0.13} a=filename b=gzip] PASSED [ 57%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True, 'f': 0.13} a=generator b=filename] PASSED [ 57%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True, 'f': 0.13} a=generator b=stream] PASSED [ 57%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True, 'f': 0.13} a=generator b=gzip] PASSED [ 58%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True, 'f': 0.13} a=stream b=filename] PASSED [ 58%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True, 'f': 0.13} a=stream b=generator] PASSED [ 58%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True, 'f': 0.13} a=stream b=gzip] PASSED [ 58%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True, 'f': 0.13} a=gzip b=filename] PASSED [ 58%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True, 'f': 0.13} a=gzip b=generator] PASSED [ 59%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True, 'f': 0.13} a=gzip b=stream] PASSED [ 59%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True, 'f': 0.1} a=filename b=generator] PASSED [ 59%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True, 'f': 0.1} a=filename b=stream] PASSED [ 59%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True, 'f': 0.1} a=filename b=gzip] PASSED [ 59%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True, 'f': 0.1} a=generator b=filename] PASSED [ 60%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True, 'f': 0.1} a=generator b=stream] PASSED [ 60%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True, 'f': 0.1} a=generator b=gzip] PASSED [ 60%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True, 'f': 0.1} a=stream b=filename] PASSED [ 60%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True, 'f': 0.1} a=stream b=generator] PASSED [ 60%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True, 'f': 0.1} a=stream b=gzip] PASSED [ 61%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True, 'f': 0.1} a=gzip b=filename] PASSED [ 61%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True, 'f': 0.1} a=gzip b=generator] PASSED [ 61%] test_iter.py::test_all[subtract: {'a': 'a.bed', 'b': 'b.bed', 's': True, 'f': 0.1} a=gzip b=stream] PASSED [ 61%] test_iter.py::test_all[slop: {'i': 'a.bed', 'b': 100, 'genome': 'hg19'} filename] PASSED [ 61%] test_iter.py::test_all[slop: {'i': 'a.bed', 'b': 100, 'genome': 'hg19'} generator] PASSED [ 62%] test_iter.py::test_all[slop: {'i': 'a.bed', 'b': 100, 'genome': 'hg19'} stream] PASSED [ 62%] test_iter.py::test_all[slop: {'i': 'a.bed', 'b': 100, 'genome': 'hg19'} gzip] PASSED [ 62%] test_iter.py::test_all[slop: {'i': 'a.bed', 'l': 100, 'r': 1, 'genome': 'hg19'} filename] PASSED [ 62%] test_iter.py::test_all[slop: {'i': 'a.bed', 'l': 100, 'r': 1, 'genome': 'hg19'} generator] PASSED [ 62%] test_iter.py::test_all[slop: {'i': 'a.bed', 'l': 100, 'r': 1, 'genome': 'hg19'} stream] PASSED [ 63%] test_iter.py::test_all[slop: {'i': 'a.bed', 'l': 100, 'r': 1, 'genome': 'hg19'} gzip] PASSED [ 63%] test_iter.py::test_all[merge: {'i': 'a.bed'} filename] PASSED [ 63%] test_iter.py::test_all[merge: {'i': 'a.bed'} generator] PASSED [ 63%] test_iter.py::test_all[merge: {'i': 'a.bed'} stream] PASSED [ 63%] test_iter.py::test_all[merge: {'i': 'a.bed'} gzip] PASSED [ 64%] test_iter.py::test_all[merge: {'i': 'b.bed', 'd': 700} filename] PASSED [ 64%] test_iter.py::test_all[merge: {'i': 'b.bed', 'd': 700} generator] PASSED [ 64%] test_iter.py::test_all[merge: {'i': 'b.bed', 'd': 700} stream] PASSED [ 64%] test_iter.py::test_all[merge: {'i': 'b.bed', 'd': 700} gzip] PASSED [ 64%] test_iter.py::test_all[bam_to_bed: {'i': 'small.bam'} filename] PASSED [ 65%] test_iter.py::test_all[bed6: {'i': 'mm9.bed12'} filename] PASSED [ 65%] test_iter.py::test_all[bed6: {'i': 'mm9.bed12'} generator] PASSED [ 65%] test_iter.py::test_all[bed6: {'i': 'mm9.bed12'} stream] PASSED [ 65%] test_iter.py::test_all[bed6: {'i': 'mm9.bed12'} gzip] PASSED [ 65%] test_iter.py::test_all[annotate: {'i': 'a.bed', 'files': ['b.bed', 'a.bed']} filename] PASSED [ 66%] test_iter.py::test_all[annotate: {'i': 'a.bed', 'files': ['b.bed', 'a.bed']} generator] PASSED [ 66%] test_iter.py::test_all[annotate: {'i': 'a.bed', 'files': ['b.bed', 'a.bed']} stream] PASSED [ 66%] test_iter.py::test_all[annotate: {'i': 'a.bed', 'files': ['b.bed', 'a.bed']} gzip] PASSED [ 66%] test_iter.py::test_all[flank: {'i': 'a.bed', 'b': 100, 'genome': 'hg19'} filename] PASSED [ 66%] test_iter.py::test_all[flank: {'i': 'a.bed', 'b': 100, 'genome': 'hg19'} generator] PASSED [ 67%] test_iter.py::test_all[flank: {'i': 'a.bed', 'b': 100, 'genome': 'hg19'} stream] PASSED [ 67%] test_iter.py::test_all[flank: {'i': 'a.bed', 'b': 100, 'genome': 'hg19'} gzip] PASSED [ 67%] test_iter.py::test_all[genome_coverage: {'ibam': 'gdc.bam', 'bg': True} filename] PASSED [ 67%] test_iter.py::test_all[genome_coverage: {'ibam': 'gdc.cram', 'bg': True} filename] PASSED [ 67%] test_iter.py::test_all[genome_coverage: {'i': 'gdc.bam', 'bg': True} filename] PASSED [ 68%] test_iter.py::test_all[genome_coverage: {'i': 'gdc.bam', 'genome': 'dm3', 'bg': True} filename] PASSED [ 68%] test_iter.py::test_all[genome_coverage: {'ibam': 'gdc.bam', 'genome': 'dm3', 'bg': True} filename] PASSED [ 68%] test_iter.py::test_all[genome_coverage: {'i': 'gdc.bed', 'genome': 'dm3', 'bg': True} filename] PASSED [ 68%] test_iter.py::test_all[genome_coverage: {'i': 'gdc.bed', 'genome': 'dm3', 'bg': True} generator] PASSED [ 68%] test_iter.py::test_all[genome_coverage: {'i': 'gdc.bed', 'genome': 'dm3', 'bg': True} stream] PASSED [ 69%] test_iter.py::test_all[genome_coverage: {'i': 'gdc.bed', 'genome': 'dm3', 'bg': True} gzip] PASSED [ 69%] test_iter.py::test_all[coverage: {'a': 'b.bed', 'b': 'a.bed'} a=filename b=generator] PASSED [ 69%] test_iter.py::test_all[coverage: {'a': 'b.bed', 'b': 'a.bed'} a=filename b=stream] PASSED [ 69%] test_iter.py::test_all[coverage: {'a': 'b.bed', 'b': 'a.bed'} a=filename b=gzip] PASSED [ 69%] test_iter.py::test_all[coverage: {'a': 'b.bed', 'b': 'a.bed'} a=generator b=filename] PASSED [ 70%] test_iter.py::test_all[coverage: {'a': 'b.bed', 'b': 'a.bed'} a=generator b=stream] PASSED [ 70%] test_iter.py::test_all[coverage: {'a': 'b.bed', 'b': 'a.bed'} a=generator b=gzip] PASSED [ 70%] test_iter.py::test_all[coverage: {'a': 'b.bed', 'b': 'a.bed'} a=stream b=filename] PASSED [ 70%] test_iter.py::test_all[coverage: {'a': 'b.bed', 'b': 'a.bed'} a=stream b=generator] PASSED [ 70%] test_iter.py::test_all[coverage: {'a': 'b.bed', 'b': 'a.bed'} a=stream b=gzip] PASSED [ 71%] test_iter.py::test_all[coverage: {'a': 'b.bed', 'b': 'a.bed'} a=gzip b=filename] PASSED [ 71%] test_iter.py::test_all[coverage: {'a': 'b.bed', 'b': 'a.bed'} a=gzip b=generator] PASSED [ 71%] test_iter.py::test_all[coverage: {'a': 'b.bed', 'b': 'a.bed'} a=gzip b=stream] PASSED [ 71%] test_iter.py::test_all[closest: {'a': 'a.bed', 'b': 'b.bed'} a=filename b=generator] PASSED [ 71%] test_iter.py::test_all[closest: {'a': 'a.bed', 'b': 'b.bed'} a=filename b=stream] PASSED [ 72%] test_iter.py::test_all[closest: {'a': 'a.bed', 'b': 'b.bed'} a=filename b=gzip] PASSED [ 72%] test_iter.py::test_all[closest: {'a': 'a.bed', 'b': 'b.bed'} a=generator b=filename] PASSED [ 72%] test_iter.py::test_all[closest: {'a': 'a.bed', 'b': 'b.bed'} a=generator b=stream] PASSED [ 72%] test_iter.py::test_all[closest: {'a': 'a.bed', 'b': 'b.bed'} a=generator b=gzip] PASSED [ 72%] test_iter.py::test_all[closest: {'a': 'a.bed', 'b': 'b.bed'} a=stream b=filename] PASSED [ 73%] test_iter.py::test_all[closest: {'a': 'a.bed', 'b': 'b.bed'} a=stream b=generator] PASSED [ 73%] test_iter.py::test_all[closest: {'a': 'a.bed', 'b': 'b.bed'} a=stream b=gzip] PASSED [ 73%] test_iter.py::test_all[closest: {'a': 'a.bed', 'b': 'b.bed'} a=gzip b=filename] PASSED [ 73%] test_iter.py::test_all[closest: {'a': 'a.bed', 'b': 'b.bed'} a=gzip b=generator] PASSED [ 73%] test_iter.py::test_all[closest: {'a': 'a.bed', 'b': 'b.bed'} a=gzip b=stream] PASSED [ 74%] test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2']} filename] PASSED [ 74%] test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2'], 's': True} filename] PASSED [ 74%] test_iter.py::test_all[tag_bam: {'i': 'gdc.cram', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2'], 's': True} filename] PASSED [ 74%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed'} a=filename b=generator] PASSED [ 74%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed'} a=filename b=stream] PASSED [ 75%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed'} a=filename b=gzip] PASSED [ 75%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed'} a=generator b=filename] PASSED [ 75%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed'} a=generator b=stream] PASSED [ 75%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed'} a=generator b=gzip] PASSED [ 75%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed'} a=stream b=filename] PASSED [ 76%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed'} a=stream b=generator] PASSED [ 76%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed'} a=stream b=gzip] PASSED [ 76%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed'} a=gzip b=filename] PASSED [ 76%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed'} a=gzip b=generator] PASSED [ 76%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed'} a=gzip b=stream] PASSED [ 77%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed', 'Sm': True} a=filename b=generator] PASSED [ 77%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed', 'Sm': True} a=filename b=stream] PASSED [ 77%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed', 'Sm': True} a=filename b=gzip] PASSED [ 77%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed', 'Sm': True} a=generator b=filename] PASSED [ 77%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed', 'Sm': True} a=generator b=stream] PASSED [ 78%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed', 'Sm': True} a=generator b=gzip] PASSED [ 78%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed', 'Sm': True} a=stream b=filename] PASSED [ 78%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed', 'Sm': True} a=stream b=generator] PASSED [ 78%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed', 'Sm': True} a=stream b=gzip] PASSED [ 78%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed', 'Sm': True} a=gzip b=filename] PASSED [ 79%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed', 'Sm': True} a=gzip b=generator] PASSED [ 79%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed', 'Sm': True} a=gzip b=stream] PASSED [ 79%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed', 'sm': True} a=filename b=generator] PASSED [ 79%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed', 'sm': True} a=filename b=stream] PASSED [ 79%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed', 'sm': True} a=filename b=gzip] PASSED [ 80%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed', 'sm': True} a=generator b=filename] PASSED [ 80%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed', 'sm': True} a=generator b=stream] PASSED [ 80%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed', 'sm': True} a=generator b=gzip] PASSED [ 80%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed', 'sm': True} a=stream b=filename] PASSED [ 80%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed', 'sm': True} a=stream b=generator] PASSED [ 81%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed', 'sm': True} a=stream b=gzip] PASSED [ 81%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed', 'sm': True} a=gzip b=filename] PASSED [ 81%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed', 'sm': True} a=gzip b=generator] PASSED [ 81%] test_iter.py::test_all[window: {'a': 'a.bed', 'b': 'b.bed', 'sm': True} a=gzip b=stream] PASSED [ 81%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff'} a=filename b=generator] PASSED [ 82%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff'} a=filename b=stream] PASSED [ 82%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff'} a=filename b=gzip] PASSED [ 82%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff'} a=generator b=filename] PASSED [ 82%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff'} a=generator b=stream] PASSED [ 82%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff'} a=generator b=gzip] PASSED [ 83%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff'} a=stream b=filename] PASSED [ 83%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff'} a=stream b=generator] PASSED [ 83%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff'} a=stream b=gzip] PASSED [ 83%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff'} a=gzip b=filename] PASSED [ 83%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff'} a=gzip b=generator] PASSED [ 84%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff'} a=gzip b=stream] PASSED [ 84%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff', 'o': 'collapse'} a=filename b=generator] PASSED [ 84%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff', 'o': 'collapse'} a=filename b=stream] PASSED [ 84%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff', 'o': 'collapse'} a=filename b=gzip] PASSED [ 84%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff', 'o': 'collapse'} a=generator b=filename] PASSED [ 85%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff', 'o': 'collapse'} a=generator b=stream] PASSED [ 85%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff', 'o': 'collapse'} a=generator b=gzip] PASSED [ 85%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff', 'o': 'collapse'} a=stream b=filename] PASSED [ 85%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff', 'o': 'collapse'} a=stream b=generator] PASSED [ 85%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff', 'o': 'collapse'} a=stream b=gzip] PASSED [ 86%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff', 'o': 'collapse'} a=gzip b=filename] PASSED [ 86%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff', 'o': 'collapse'} a=gzip b=generator] PASSED [ 86%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff', 'o': 'collapse'} a=gzip b=stream] PASSED [ 86%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff', 'o': 'collapse', 'c': 3} a=filename b=generator] PASSED [ 86%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff', 'o': 'collapse', 'c': 3} a=filename b=stream] PASSED [ 87%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff', 'o': 'collapse', 'c': 3} a=filename b=gzip] PASSED [ 87%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff', 'o': 'collapse', 'c': 3} a=generator b=filename] PASSED [ 87%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff', 'o': 'collapse', 'c': 3} a=generator b=stream] PASSED [ 87%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff', 'o': 'collapse', 'c': 3} a=generator b=gzip] PASSED [ 87%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff', 'o': 'collapse', 'c': 3} a=stream b=filename] PASSED [ 88%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff', 'o': 'collapse', 'c': 3} a=stream b=generator] PASSED [ 88%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff', 'o': 'collapse', 'c': 3} a=stream b=gzip] PASSED [ 88%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff', 'o': 'collapse', 'c': 3} a=gzip b=filename] PASSED [ 88%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff', 'o': 'collapse', 'c': 3} a=gzip b=generator] PASSED [ 88%] test_iter.py::test_all[map: {'a': 'a.bed', 'b': 'd.gff', 'o': 'collapse', 'c': 3} a=gzip b=stream] PASSED [ 89%] test_iter.py::test_all[cluster: {'i': 'a.bed'} filename] 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'type': 'either'} a=generator b=filename] PASSED [ 91%] test_iter.py::test_all[pair_to_pair: {'a': 'bedpe.bed', 'b': 'bedpe2.bed', 'type': 'either'} a=generator b=stream] PASSED [ 91%] test_iter.py::test_all[pair_to_pair: {'a': 'bedpe.bed', 'b': 'bedpe2.bed', 'type': 'either'} a=generator b=gzip] PASSED [ 91%] test_iter.py::test_all[pair_to_pair: {'a': 'bedpe.bed', 'b': 'bedpe2.bed', 'type': 'either'} a=stream b=filename] PASSED [ 92%] test_iter.py::test_all[pair_to_pair: {'a': 'bedpe.bed', 'b': 'bedpe2.bed', 'type': 'either'} a=stream b=generator] PASSED [ 92%] test_iter.py::test_all[pair_to_pair: {'a': 'bedpe.bed', 'b': 'bedpe2.bed', 'type': 'either'} a=stream b=gzip] PASSED [ 92%] test_iter.py::test_all[pair_to_pair: {'a': 'bedpe.bed', 'b': 'bedpe2.bed', 'type': 'either'} a=gzip b=filename] PASSED [ 92%] test_iter.py::test_all[pair_to_pair: {'a': 'bedpe.bed', 'b': 'bedpe2.bed', 'type': 'either'} a=gzip b=generator] PASSED [ 92%] test_iter.py::test_all[pair_to_pair: {'a': 'bedpe.bed', 'b': 'bedpe2.bed', 'type': 'either'} a=gzip b=stream] PASSED [ 93%] test_iter.py::test_all[pair_to_bed: {'a': 'bedpe.bed', 'b': 'b.bed'} a=filename b=generator] PASSED [ 93%] test_iter.py::test_all[pair_to_bed: {'a': 'bedpe.bed', 'b': 'b.bed'} a=filename b=stream] PASSED [ 93%] test_iter.py::test_all[pair_to_bed: {'a': 'bedpe.bed', 'b': 'b.bed'} a=filename b=gzip] PASSED [ 93%] test_iter.py::test_all[pair_to_bed: {'a': 'bedpe.bed', 'b': 'b.bed'} a=generator b=filename] PASSED [ 93%] test_iter.py::test_all[pair_to_bed: {'a': 'bedpe.bed', 'b': 'b.bed'} a=generator b=stream] PASSED [ 94%] test_iter.py::test_all[pair_to_bed: {'a': 'bedpe.bed', 'b': 'b.bed'} a=generator b=gzip] PASSED [ 94%] test_iter.py::test_all[pair_to_bed: {'a': 'bedpe.bed', 'b': 'b.bed'} a=stream b=filename] PASSED [ 94%] test_iter.py::test_all[pair_to_bed: {'a': 'bedpe.bed', 'b': 'b.bed'} a=stream b=generator] PASSED [ 94%] test_iter.py::test_all[pair_to_bed: {'a': 'bedpe.bed', 'b': 'b.bed'} a=stream 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'seed': 1, 'n': 2} gzip] PASSED [ 97%] test_iter.py::test_all[merge: {'i': 'a.bed', 's': True, 'c': [4, 5, 6], 'o': 'distinct'} filename] PASSED [ 97%] test_iter.py::test_all[merge: {'i': 'a.bed', 's': True, 'c': [4, 5, 6], 'o': 'distinct'} generator] PASSED [ 97%] test_iter.py::test_all[merge: {'i': 'a.bed', 's': True, 'c': [4, 5, 6], 'o': 'distinct'} stream] PASSED [ 97%] test_iter.py::test_all[merge: {'i': 'a.bed', 's': True, 'c': [4, 5, 6], 'o': 'distinct'} gzip] PASSED [ 97%] test_iter.py::test_all[merge: {'i': 'a.bed', 's': True} filename] PASSED [ 98%] test_iter.py::test_all[merge: {'i': 'a.bed', 's': True} generator] PASSED [ 98%] test_iter.py::test_all[merge: {'i': 'a.bed', 's': True} stream] PASSED [ 98%] test_iter.py::test_all[merge: {'i': 'a.bed', 's': True} gzip] PASSED [ 98%] test_iter.py::test_all[shuffle: {'i': 'a.bed', 'seed': 1, 'genome': 'hg19', 'chrom': True} filename] PASSED [ 98%] test_iter.py::test_all[shuffle: {'i': 'a.bed', 'seed': 1, 'genome': 'hg19', 'chrom': True} generator] PASSED [ 99%] test_iter.py::test_all[shuffle: {'i': 'a.bed', 'seed': 1, 'genome': 'hg19', 'chrom': True} stream] PASSED [ 99%] test_iter.py::test_all[shuffle: {'i': 'a.bed', 'seed': 1, 'genome': 'hg19', 'chrom': True} gzip] PASSED [ 99%] test_pathlib.py::test_pathlib_base PASSED [ 99%] test_pathlib.py::test_pathlib_derived PASSED [ 99%] test_pathlib.py::test_pathlib_nonexistent_file PASSED [100%] =============================== warnings summary =============================== /gnu/store/l55xrj9dgjrbp18cdm6g7fl2i7hnzcmw-python-pysam-0.15.1/lib/python3.8/site-packages/pysam/__init__.py:16 /gnu/store/l55xrj9dgjrbp18cdm6g7fl2i7hnzcmw-python-pysam-0.15.1/lib/python3.8/site-packages/pysam/__init__.py:16 /gnu/store/l55xrj9dgjrbp18cdm6g7fl2i7hnzcmw-python-pysam-0.15.1/lib/python3.8/site-packages/pysam/__init__.py:16: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.9 it will stop working import pysam.libcsamfile as libcsamfile test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_print_abam test_1.py::test_bam_iter test_1.py::test_bam_iter test_1.py::test_bam_iter test_1.py::test_bam_iter test_1.py::test_bam_interval test_1.py::test_bam_interval test_1.py::test_bam_interval test_1.py::test_bam_interval test_1.py::test_bam_interval test_1.py::test_bam_interval test_1.py::test_bam_interval test_1.py::test_bam_interval test_1.py::test_bam_interval test_1.py::test_bam_interval test_1.py::test_bam_interval test_1.py::test_bam_interval test_1.py::test_bam_regression test_1.py::test_bam_regression test_1.py::test_bam_regression test_1.py::test_bam_regression test_1.py::test_sam_filetype test_1.py::test_sam_filetype test_1.py::test_sam_filetype test_1.py::test_sam_filetype test_1.py::test_sam_filetype test_1.py::test_sam_filetype test_1.py::test_sam_filetype test_1.py::test_sam_filetype test_1.py::test_sam_filetype test_1.py::test_sam_filetype test_1.py::test_sam_filetype test_1.py::test_sam_filetype test_1.py::test_sam_filetype test_1.py::test_sam_filetype test_1.py::test_sam_filetype test_1.py::test_sam_filetype test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 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test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 test_1.py::test_bam_to_sam_to_bam2 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test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2']} filename] test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2']} filename] test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2']} filename] test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2']} filename] test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2']} filename] test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2']} filename] test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2']} filename] test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2']} filename] test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2']} filename] test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2']} filename] test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2'], 's': True} filename] test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2'], 's': True} filename] test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2'], 's': True} filename] test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2'], 's': True} filename] test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2'], 's': True} filename] test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2'], 's': True} filename] test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2'], 's': True} filename] test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2'], 's': True} filename] test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2'], 's': True} filename] test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2'], 's': True} filename] test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2'], 's': True} filename] test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2'], 's': True} filename] test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2'], 's': True} filename] test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2'], 's': True} filename] test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2'], 's': True} filename] test_iter.py::test_all[tag_bam: {'i': 'gdc.bam', 'files': ['tag_test1.bed', 'tag_test2.bed'], 'labels': ['1', '2'], 's': True} filename] /tmp/guix-build-python-pybedtools-0.8.2.drv-0/pybedtools-0.8.2/build/lib.linux-x86_64-3.8/pybedtools/bedtool.py:3832: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. return self._aligned_segment_to_interval(next(self.pysam_bamfile)) -- Docs: https://docs.pytest.org/en/latest/warnings.html ================ 497 passed, 3 xfailed, 426 warnings in 53.59s ================= Error in atexit._run_exitfuncs: Traceback (most recent call last): File "/gnu/store/9w9jvy3bgjg4qaqmrij01nbppiccqr7c-python-3.8.2/lib/python3.8/shutil.py", line 704, in rmtree orig_st = os.lstat(path) FileNotFoundError: [Errno 2] No such file or directory: '/tmp/test/tmp/matplotlib-ib0jef8y' phase `check' succeeded after 57.9 seconds starting phase `patch-shebangs' phase `patch-shebangs' succeeded after 0.0 seconds starting phase `rename-pth-file' phase `rename-pth-file' succeeded after 0.0 seconds starting phase `strip' stripping binaries in "/gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib" with "strip" and flags ("--strip-debug" "--enable-deterministic-archives") phase `strip' succeeded after 0.1 seconds starting phase `validate-runpath' validating RUNPATH of 2 binaries in "/gnu/store/2qssjr7smcc62zbgavxh6yz51v7g8zj6-python-pybedtools-0.8.2/lib"... phase `validate-runpath' succeeded after 0.0 seconds starting phase `validate-documentation-location' phase `validate-documentation-location' succeeded after 0.0 seconds starting phase `delete-info-dir-file' phase `delete-info-dir-file' succeeded after 0.0 seconds starting phase `patch-dot-desktop-files' phase `patch-dot-desktop-files' succeeded after 0.0 seconds starting phase `install-license-files' installing 1 license files from '.' phase `install-license-files' succeeded after 0.0 seconds starting phase `reset-gzip-timestamps' phase `reset-gzip-timestamps' succeeded after 0.0 seconds starting phase `compress-documentation' phase `compress-documentation' succeeded after 0.0 seconds