starting phase `separate-from-pid1'
build process now running as PID 18
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starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/q48wjffvyihmc6z95d0rlgkcnpk6k1nm-cmake-minimal-cross-3.24.2/bin:/gnu/store/0f3riq7g550rvhbk2gmm9n4zax0z2vy6-pkg-config-i586-pc-gnu-0.29.2/bin:/gnu/store/iryj1yq5iyxmnxs4fd7k5m050larcacn-samtools-1.19/bin:/gnu/store/b9b3zv243k3s2ryb6y27609y3zgls82l-gcc-cross-i586-pc-gnu-11.4.0/bin:/gnu/store/xk5y49ahzp2kdhn13c8yjvgx4zq14z8y-binutils-cross-i586-pc-gnu-2.41/bin:/gnu/store/j5zgzgsmbjgywr67r86h1n6s4qiabv5q-tar-1.34/bin:/gnu/store/0r2fx1lr1h2i3cl1x5fw4s4ly95qspya-gzip-1.13/bin:/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/bin:/gnu/store/544ga5n6nq8y2961ihigra6n6a0r99nn-file-5.45/bin:/gnu/store/swmflx2bmqpf0drm167pxfpgyr7ckcam-diffutils-3.10/bin:/gnu/store/4jhlsg65s1zx90gnnfmaax52i8prnl45-patch-2.7.6/bin:/gnu/store/b5c62i99dsfa5j0j3f8g2j1xdi6fih22-findutils-4.9.0/bin:/gnu/store/vrl2r0ps24k1a6yap2chjylv5rhbndvr-gawk-5.3.0/bin:/gnu/store/3f0fjq25n2kwcmi0zyrf216wa6g8xpjw-zstd-1.5.2/bin:/gnu/store/3i4fr8riqw9azh1p4mqggl5vdz23kyr8-sed-4.8/bin:/gnu/store/7k8b93779dqpwcg2qjdvnf4nl43jv7hf-grep-3.11/bin:/gnu/store/fbaw0sb21gv02qq7gs9wg5y5wlpdgzih-xz-5.4.5/bin:/gnu/store/7h0mnlwalw23j9jmvz5n1i5mqkgb4d06-coreutils-9.1/bin:/gnu/store/lc6r1mh0jlcwixjziiw1zsx1my478rv1-make-4.4.1/bin:/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin:/gnu/store/3k6lyifyg024lk3gncsgf2gzjzvc70gv-ld-wrapper-0/bin:/gnu/store/ylgkrq9j1gyfig2y66srmgsbyh9w20d9-binutils-2.41/bin:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/bin:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/bin:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/sbin'
environment variable `CMAKE_PREFIX_PATH' set to `/gnu/store/ggm0c2friqhy7289p5rsy1ja1cm71z0b-atomic-queue-1.0/:/gnu/store/jbbxbd97jszcfwm86a56nwa8qmbwbry5-gsl-2.7.1/:/gnu/store/i9y22ydmi3pzzby0714cb37m232dcn2g-htslib-1.19/:/gnu/store/h3nb3zdbvldqyin25wl9b7jbqgil6rl1-libdeflate-1.19/:/gnu/store/v439i0cv2hpdvw1hc3a3blg0lvw22r2a-zlib-1.3/:/gnu/store/r7wkg34jjzmk5bm8nvhbwq20hy9035df-htscodecs-1.6.0/:/gnu/store/b9b3zv243k3s2ryb6y27609y3zgls82l-gcc-cross-i586-pc-gnu-11.4.0/:/gnu/store/81ffz0prarfczr408ydnps31jf72s5ly-glibc-cross-i586-pc-gnu-2.39/:/gnu/store/hrkafhy391gf0v3lf4mij0r7g2azh591-glibc-cross-i586-pc-gnu-2.39-static/:/gnu/store/hdlfqpbkwlb2ax80qx6infmmisgch24x-hurd-core-headers-cross-i586-pc-gnu-0.9.git20231217/'
environment variable `SSL_CERT_DIR' unset
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environment variable `PKG_CONFIG_PATH' set to `/gnu/store/jbbxbd97jszcfwm86a56nwa8qmbwbry5-gsl-2.7.1/lib/pkgconfig:/gnu/store/i9y22ydmi3pzzby0714cb37m232dcn2g-htslib-1.19/lib/pkgconfig:/gnu/store/h3nb3zdbvldqyin25wl9b7jbqgil6rl1-libdeflate-1.19/lib/pkgconfig:/gnu/store/v439i0cv2hpdvw1hc3a3blg0lvw22r2a-zlib-1.3/lib/pkgconfig'
environment variable `CROSS_LIBRARY_PATH' set to `/gnu/store/jbbxbd97jszcfwm86a56nwa8qmbwbry5-gsl-2.7.1/lib:/gnu/store/i9y22ydmi3pzzby0714cb37m232dcn2g-htslib-1.19/lib:/gnu/store/h3nb3zdbvldqyin25wl9b7jbqgil6rl1-libdeflate-1.19/lib:/gnu/store/v439i0cv2hpdvw1hc3a3blg0lvw22r2a-zlib-1.3/lib:/gnu/store/r7wkg34jjzmk5bm8nvhbwq20hy9035df-htscodecs-1.6.0/lib:/gnu/store/81ffz0prarfczr408ydnps31jf72s5ly-glibc-cross-i586-pc-gnu-2.39/lib:/gnu/store/hrkafhy391gf0v3lf4mij0r7g2azh591-glibc-cross-i586-pc-gnu-2.39-static/lib:/gnu/store/hdlfqpbkwlb2ax80qx6infmmisgch24x-hurd-core-headers-cross-i586-pc-gnu-0.9.git20231217/lib'
environment variable `CROSS_C_INCLUDE_PATH' set to `/gnu/store/ggm0c2friqhy7289p5rsy1ja1cm71z0b-atomic-queue-1.0/include:/gnu/store/jbbxbd97jszcfwm86a56nwa8qmbwbry5-gsl-2.7.1/include:/gnu/store/i9y22ydmi3pzzby0714cb37m232dcn2g-htslib-1.19/include:/gnu/store/h3nb3zdbvldqyin25wl9b7jbqgil6rl1-libdeflate-1.19/include:/gnu/store/v439i0cv2hpdvw1hc3a3blg0lvw22r2a-zlib-1.3/include:/gnu/store/r7wkg34jjzmk5bm8nvhbwq20hy9035df-htscodecs-1.6.0/include:/gnu/store/b9b3zv243k3s2ryb6y27609y3zgls82l-gcc-cross-i586-pc-gnu-11.4.0/include:/gnu/store/81ffz0prarfczr408ydnps31jf72s5ly-glibc-cross-i586-pc-gnu-2.39/include:/gnu/store/hdlfqpbkwlb2ax80qx6infmmisgch24x-hurd-core-headers-cross-i586-pc-gnu-0.9.git20231217/include'
environment variable `CROSS_CPLUS_INCLUDE_PATH' set to `/gnu/store/ggm0c2friqhy7289p5rsy1ja1cm71z0b-atomic-queue-1.0/include:/gnu/store/jbbxbd97jszcfwm86a56nwa8qmbwbry5-gsl-2.7.1/include:/gnu/store/i9y22ydmi3pzzby0714cb37m232dcn2g-htslib-1.19/include:/gnu/store/h3nb3zdbvldqyin25wl9b7jbqgil6rl1-libdeflate-1.19/include:/gnu/store/v439i0cv2hpdvw1hc3a3blg0lvw22r2a-zlib-1.3/include:/gnu/store/r7wkg34jjzmk5bm8nvhbwq20hy9035df-htscodecs-1.6.0/include:/gnu/store/b9b3zv243k3s2ryb6y27609y3zgls82l-gcc-cross-i586-pc-gnu-11.4.0/include/c++:/gnu/store/b9b3zv243k3s2ryb6y27609y3zgls82l-gcc-cross-i586-pc-gnu-11.4.0/include:/gnu/store/81ffz0prarfczr408ydnps31jf72s5ly-glibc-cross-i586-pc-gnu-2.39/include:/gnu/store/hdlfqpbkwlb2ax80qx6infmmisgch24x-hurd-core-headers-cross-i586-pc-gnu-0.9.git20231217/include'
environment variable `CROSS_OBJC_INCLUDE_PATH' set to `/gnu/store/ggm0c2friqhy7289p5rsy1ja1cm71z0b-atomic-queue-1.0/include:/gnu/store/jbbxbd97jszcfwm86a56nwa8qmbwbry5-gsl-2.7.1/include:/gnu/store/i9y22ydmi3pzzby0714cb37m232dcn2g-htslib-1.19/include:/gnu/store/h3nb3zdbvldqyin25wl9b7jbqgil6rl1-libdeflate-1.19/include:/gnu/store/v439i0cv2hpdvw1hc3a3blg0lvw22r2a-zlib-1.3/include:/gnu/store/r7wkg34jjzmk5bm8nvhbwq20hy9035df-htscodecs-1.6.0/include:/gnu/store/b9b3zv243k3s2ryb6y27609y3zgls82l-gcc-cross-i586-pc-gnu-11.4.0/include:/gnu/store/81ffz0prarfczr408ydnps31jf72s5ly-glibc-cross-i586-pc-gnu-2.39/include:/gnu/store/hdlfqpbkwlb2ax80qx6infmmisgch24x-hurd-core-headers-cross-i586-pc-gnu-0.9.git20231217/include'
environment variable `CROSS_OBJCPLUS_INCLUDE_PATH' set to `/gnu/store/ggm0c2friqhy7289p5rsy1ja1cm71z0b-atomic-queue-1.0/include:/gnu/store/jbbxbd97jszcfwm86a56nwa8qmbwbry5-gsl-2.7.1/include:/gnu/store/i9y22ydmi3pzzby0714cb37m232dcn2g-htslib-1.19/include:/gnu/store/h3nb3zdbvldqyin25wl9b7jbqgil6rl1-libdeflate-1.19/include:/gnu/store/v439i0cv2hpdvw1hc3a3blg0lvw22r2a-zlib-1.3/include:/gnu/store/r7wkg34jjzmk5bm8nvhbwq20hy9035df-htscodecs-1.6.0/include:/gnu/store/b9b3zv243k3s2ryb6y27609y3zgls82l-gcc-cross-i586-pc-gnu-11.4.0/include:/gnu/store/81ffz0prarfczr408ydnps31jf72s5ly-glibc-cross-i586-pc-gnu-2.39/include:/gnu/store/hdlfqpbkwlb2ax80qx6infmmisgch24x-hurd-core-headers-cross-i586-pc-gnu-0.9.git20231217/include'
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/b9b3zv243k3s2ryb6y27609y3zgls82l-gcc-cross-i586-pc-gnu-11.4.0/include:/gnu/store/xk5y49ahzp2kdhn13c8yjvgx4zq14z8y-binutils-cross-i586-pc-gnu-2.41/include:/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/include:/gnu/store/544ga5n6nq8y2961ihigra6n6a0r99nn-file-5.45/include:/gnu/store/vrl2r0ps24k1a6yap2chjylv5rhbndvr-gawk-5.3.0/include:/gnu/store/fbaw0sb21gv02qq7gs9wg5y5wlpdgzih-xz-5.4.5/include:/gnu/store/lc6r1mh0jlcwixjziiw1zsx1my478rv1-make-4.4.1/include:/gnu/store/ylgkrq9j1gyfig2y66srmgsbyh9w20d9-binutils-2.41/include:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/include:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/include:/gnu/store/svghsdn1x3fyili8ij791nn25zba9bpf-linux-libre-headers-5.15.49/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/b9b3zv243k3s2ryb6y27609y3zgls82l-gcc-cross-i586-pc-gnu-11.4.0/include/c++:/gnu/store/b9b3zv243k3s2ryb6y27609y3zgls82l-gcc-cross-i586-pc-gnu-11.4.0/include:/gnu/store/xk5y49ahzp2kdhn13c8yjvgx4zq14z8y-binutils-cross-i586-pc-gnu-2.41/include:/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/include:/gnu/store/544ga5n6nq8y2961ihigra6n6a0r99nn-file-5.45/include:/gnu/store/vrl2r0ps24k1a6yap2chjylv5rhbndvr-gawk-5.3.0/include:/gnu/store/fbaw0sb21gv02qq7gs9wg5y5wlpdgzih-xz-5.4.5/include:/gnu/store/lc6r1mh0jlcwixjziiw1zsx1my478rv1-make-4.4.1/include:/gnu/store/ylgkrq9j1gyfig2y66srmgsbyh9w20d9-binutils-2.41/include:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/include/c++:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/include:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/include:/gnu/store/svghsdn1x3fyili8ij791nn25zba9bpf-linux-libre-headers-5.15.49/include'
environment variable `OBJC_INCLUDE_PATH' set to `/gnu/store/b9b3zv243k3s2ryb6y27609y3zgls82l-gcc-cross-i586-pc-gnu-11.4.0/include:/gnu/store/xk5y49ahzp2kdhn13c8yjvgx4zq14z8y-binutils-cross-i586-pc-gnu-2.41/include:/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/include:/gnu/store/544ga5n6nq8y2961ihigra6n6a0r99nn-file-5.45/include:/gnu/store/vrl2r0ps24k1a6yap2chjylv5rhbndvr-gawk-5.3.0/include:/gnu/store/fbaw0sb21gv02qq7gs9wg5y5wlpdgzih-xz-5.4.5/include:/gnu/store/lc6r1mh0jlcwixjziiw1zsx1my478rv1-make-4.4.1/include:/gnu/store/ylgkrq9j1gyfig2y66srmgsbyh9w20d9-binutils-2.41/include:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/include:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/include:/gnu/store/svghsdn1x3fyili8ij791nn25zba9bpf-linux-libre-headers-5.15.49/include'
environment variable `OBJCPLUS_INCLUDE_PATH' set to `/gnu/store/b9b3zv243k3s2ryb6y27609y3zgls82l-gcc-cross-i586-pc-gnu-11.4.0/include/c++:/gnu/store/b9b3zv243k3s2ryb6y27609y3zgls82l-gcc-cross-i586-pc-gnu-11.4.0/include:/gnu/store/xk5y49ahzp2kdhn13c8yjvgx4zq14z8y-binutils-cross-i586-pc-gnu-2.41/include:/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/include:/gnu/store/544ga5n6nq8y2961ihigra6n6a0r99nn-file-5.45/include:/gnu/store/vrl2r0ps24k1a6yap2chjylv5rhbndvr-gawk-5.3.0/include:/gnu/store/fbaw0sb21gv02qq7gs9wg5y5wlpdgzih-xz-5.4.5/include:/gnu/store/lc6r1mh0jlcwixjziiw1zsx1my478rv1-make-4.4.1/include:/gnu/store/ylgkrq9j1gyfig2y66srmgsbyh9w20d9-binutils-2.41/include:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/include/c++:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/include:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/include:/gnu/store/svghsdn1x3fyili8ij791nn25zba9bpf-linux-libre-headers-5.15.49/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/xk5y49ahzp2kdhn13c8yjvgx4zq14z8y-binutils-cross-i586-pc-gnu-2.41/lib:/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/lib:/gnu/store/544ga5n6nq8y2961ihigra6n6a0r99nn-file-5.45/lib:/gnu/store/vrl2r0ps24k1a6yap2chjylv5rhbndvr-gawk-5.3.0/lib:/gnu/store/fbaw0sb21gv02qq7gs9wg5y5wlpdgzih-xz-5.4.5/lib:/gnu/store/ylgkrq9j1gyfig2y66srmgsbyh9w20d9-binutils-2.41/lib:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/lib:/gnu/store/vqdiyyqbrv4akp68pfya4j6m3pdbnhca-glibc-2.39-static/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/lib/locale'
environment variable `TZDIR' unset
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'C.UTF-8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
wfmash-v0.21.0/
wfmash-v0.21.0/.clang-format
wfmash-v0.21.0/.github/
wfmash-v0.21.0/.github/workflows/
wfmash-v0.21.0/.github/workflows/test_on_push.yml
wfmash-v0.21.0/.gitignore
wfmash-v0.21.0/CITATION.cff
wfmash-v0.21.0/CMakeLists.txt
wfmash-v0.21.0/CTestCustom.cmake
wfmash-v0.21.0/LICENSE
wfmash-v0.21.0/README.md
wfmash-v0.21.0/data/
wfmash-v0.21.0/data/LPA.subset.fa.gz
wfmash-v0.21.0/data/LPA.subset.fa.gz.fai
wfmash-v0.21.0/data/LPA.subset.fa.gz.gzi
wfmash-v0.21.0/data/reads.255bps.fa.gz
wfmash-v0.21.0/data/reads.255bps.fa.gz.fai
wfmash-v0.21.0/data/reads.255bps.fa.gz.gzi
wfmash-v0.21.0/data/reads.500bps.fa.gz
wfmash-v0.21.0/data/reads.500bps.fa.gz.fai
wfmash-v0.21.0/data/reads.500bps.fa.gz.gzi
wfmash-v0.21.0/data/reference.fa.gz
wfmash-v0.21.0/data/reference.fa.gz.fai
wfmash-v0.21.0/data/reference.fa.gz.gzi
wfmash-v0.21.0/data/scerevisiae8.fa.gz
wfmash-v0.21.0/data/scerevisiae8.fa.gz.fai
wfmash-v0.21.0/data/scerevisiae8.fa.gz.gzi
wfmash-v0.21.0/flake.lock
wfmash-v0.21.0/flake.nix
wfmash-v0.21.0/guix-static.scm
wfmash-v0.21.0/guix.scm
wfmash-v0.21.0/scripts/
wfmash-v0.21.0/scripts/all2all_jobs.py
wfmash-v0.21.0/scripts/denovo_repeat_annotation.py
wfmash-v0.21.0/scripts/fasta+paf2vcf.sh
wfmash-v0.21.0/scripts/generate_git_version.sh
wfmash-v0.21.0/scripts/make_align_test_case.sh
wfmash-v0.21.0/scripts/make_source_targball.sh
wfmash-v0.21.0/scripts/paf+fasta2seq.sh
wfmash-v0.21.0/scripts/paf2dotplot
wfmash-v0.21.0/scripts/split_approx_mappings_in_chunks.py
wfmash-v0.21.0/scripts/test.sh
wfmash-v0.21.0/scripts/wfplot.R
wfmash-v0.21.0/src/
wfmash-v0.21.0/src/align/
wfmash-v0.21.0/src/align/align.cpp
wfmash-v0.21.0/src/align/include/
wfmash-v0.21.0/src/align/include/align_parameters.hpp
wfmash-v0.21.0/src/align/include/align_types.hpp
wfmash-v0.21.0/src/align/include/computeAlignments.hpp
wfmash-v0.21.0/src/align/include/parseCmdArgs.hpp
wfmash-v0.21.0/src/common/
wfmash-v0.21.0/src/common/ALeS.hpp
wfmash-v0.21.0/src/common/ankerl/
wfmash-v0.21.0/src/common/ankerl/unordered_dense.hpp
wfmash-v0.21.0/src/common/args.hxx
wfmash-v0.21.0/src/common/argvparser.hpp
wfmash-v0.21.0/src/common/csv.h
wfmash-v0.21.0/src/common/dset64-gccAtomic.hpp
wfmash-v0.21.0/src/common/dset64.hpp
wfmash-v0.21.0/src/common/gzstream.h
wfmash-v0.21.0/src/common/kseq.h
wfmash-v0.21.0/src/common/memcpyLink.h
wfmash-v0.21.0/src/common/murmur3.h
wfmash-v0.21.0/src/common/prettyprint.hpp
wfmash-v0.21.0/src/common/progress.hpp
wfmash-v0.21.0/src/common/robin-hood-hashing/
wfmash-v0.21.0/src/common/robin-hood-hashing/robin_hood.h
wfmash-v0.21.0/src/common/seqiter.hpp
wfmash-v0.21.0/src/common/union_find.hpp
wfmash-v0.21.0/src/common/utils.cpp
wfmash-v0.21.0/src/common/utils.hpp
wfmash-v0.21.0/src/common/wflign/
wfmash-v0.21.0/src/common/wflign/.gitignore
wfmash-v0.21.0/src/common/wflign/CMakeLists.txt
wfmash-v0.21.0/src/common/wflign/LICENSE
wfmash-v0.21.0/src/common/wflign/README.md
wfmash-v0.21.0/src/common/wflign/deps/
wfmash-v0.21.0/src/common/wflign/deps/PicoSHA2/
wfmash-v0.21.0/src/common/wflign/deps/PicoSHA2/LICENSE
wfmash-v0.21.0/src/common/wflign/deps/PicoSHA2/README.md
wfmash-v0.21.0/src/common/wflign/deps/PicoSHA2/example/
wfmash-v0.21.0/src/common/wflign/deps/PicoSHA2/example/hasher.cpp
wfmash-v0.21.0/src/common/wflign/deps/PicoSHA2/example/interactive_hasher.cpp
wfmash-v0.21.0/src/common/wflign/deps/PicoSHA2/picosha2.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/.gitignore
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/CMakeLists.txt
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/LICENSE
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/Makefile
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/README.md
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wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/utils/bitmap.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/utils/commons.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/utils/commons.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/utils/dna_text.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/utils/dna_text.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/utils/heatmap.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/utils/heatmap.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/utils/sequence_buffer.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/utils/sequence_buffer.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/utils/vector.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/utils/vector.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/Makefile
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_align.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_align.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_aligner.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_aligner.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_attributes.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_attributes.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_backtrace.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_backtrace.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_backtrace_buffer.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_backtrace_buffer.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_backtrace_offload.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_backtrace_offload.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_bialign.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_bialign.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_bialigner.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_bialigner.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_components.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_components.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_compute.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_compute.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_compute_affine.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_compute_affine.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_compute_affine2p.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_compute_affine2p.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_compute_edit.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_compute_edit.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_compute_linear.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_compute_linear.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_debug.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_debug.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_display.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_display.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_extend.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_extend.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_extend_kernels.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_extend_kernels.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_extend_kernels_avx.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_extend_kernels_avx.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_heuristic.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_heuristic.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_offset.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_pcigar.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_pcigar.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_penalties.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_penalties.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_plot.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_plot.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_sequences.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_sequences.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_slab.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_slab.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_termination.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_termination.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_unialign.c
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wavefront_unialign.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wfa.h
wfmash-v0.21.0/src/common/wflign/deps/WFA2-lib/wavefront/wfa.hpp
wfmash-v0.21.0/src/common/wflign/deps/atomic_image.cpp
wfmash-v0.21.0/src/common/wflign/deps/atomic_image.hpp
wfmash-v0.21.0/src/common/wflign/deps/lodepng/
wfmash-v0.21.0/src/common/wflign/deps/lodepng/CMakeLists.txt
wfmash-v0.21.0/src/common/wflign/deps/lodepng/LICENSE
wfmash-v0.21.0/src/common/wflign/deps/lodepng/README.md
wfmash-v0.21.0/src/common/wflign/deps/lodepng/examples/
wfmash-v0.21.0/src/common/wflign/deps/lodepng/examples/example_4bit_palette.cpp
wfmash-v0.21.0/src/common/wflign/deps/lodepng/examples/example_bmp2png.cpp
wfmash-v0.21.0/src/common/wflign/deps/lodepng/examples/example_decode.c
wfmash-v0.21.0/src/common/wflign/deps/lodepng/examples/example_decode.cpp
wfmash-v0.21.0/src/common/wflign/deps/lodepng/examples/example_encode.c
wfmash-v0.21.0/src/common/wflign/deps/lodepng/examples/example_encode.cpp
wfmash-v0.21.0/src/common/wflign/deps/lodepng/examples/example_encode_type.cpp
wfmash-v0.21.0/src/common/wflign/deps/lodepng/examples/example_gzip.cpp
wfmash-v0.21.0/src/common/wflign/deps/lodepng/examples/example_opengl.cpp
wfmash-v0.21.0/src/common/wflign/deps/lodepng/examples/example_optimize_png.cpp
wfmash-v0.21.0/src/common/wflign/deps/lodepng/examples/example_png2bmp.cpp
wfmash-v0.21.0/src/common/wflign/deps/lodepng/examples/example_png_info.cpp
wfmash-v0.21.0/src/common/wflign/deps/lodepng/examples/example_reencode.cpp
wfmash-v0.21.0/src/common/wflign/deps/lodepng/examples/example_sdl.c
wfmash-v0.21.0/src/common/wflign/deps/lodepng/examples/example_sdl.cpp
wfmash-v0.21.0/src/common/wflign/deps/lodepng/lodepng.cpp
wfmash-v0.21.0/src/common/wflign/deps/lodepng/lodepng.h
wfmash-v0.21.0/src/common/wflign/deps/lodepng/lodepng_benchmark.cpp
wfmash-v0.21.0/src/common/wflign/deps/lodepng/lodepng_unittest.cpp
wfmash-v0.21.0/src/common/wflign/deps/lodepng/lodepng_util.cpp
wfmash-v0.21.0/src/common/wflign/deps/lodepng/lodepng_util.h
wfmash-v0.21.0/src/common/wflign/deps/lodepng/pngdetail.cpp
wfmash-v0.21.0/src/common/wflign/deps/robin-hood-hashing/
wfmash-v0.21.0/src/common/wflign/deps/robin-hood-hashing/robin_hood.h
wfmash-v0.21.0/src/common/wflign/src/
wfmash-v0.21.0/src/common/wflign/src/args.hxx
wfmash-v0.21.0/src/common/wflign/src/dna.hpp
wfmash-v0.21.0/src/common/wflign/src/filesystem.hpp
wfmash-v0.21.0/src/common/wflign/src/gzstream.h
wfmash-v0.21.0/src/common/wflign/src/lodepng.cpp
wfmash-v0.21.0/src/common/wflign/src/lodepng.hpp
wfmash-v0.21.0/src/common/wflign/src/murmur3.cpp
wfmash-v0.21.0/src/common/wflign/src/murmur3.hpp
wfmash-v0.21.0/src/common/wflign/src/rkmh.cpp
wfmash-v0.21.0/src/common/wflign/src/rkmh.hpp
wfmash-v0.21.0/src/common/wflign/src/seqiter.hpp
wfmash-v0.21.0/src/common/wflign/src/wfa_edit_callback.cpp
wfmash-v0.21.0/src/common/wflign/src/wfa_edit_callback.hpp
wfmash-v0.21.0/src/common/wflign/src/wfav2_stub.cpp
wfmash-v0.21.0/src/common/wflign/src/wflign.cpp
wfmash-v0.21.0/src/common/wflign/src/wflign.hpp
wfmash-v0.21.0/src/common/wflign/src/wflign_alignment.cpp
wfmash-v0.21.0/src/common/wflign/src/wflign_alignment.hpp
wfmash-v0.21.0/src/common/wflign/src/wflign_patch.cpp
wfmash-v0.21.0/src/common/wflign/src/wflign_patch.hpp
wfmash-v0.21.0/src/interface/
wfmash-v0.21.0/src/interface/main.cpp
wfmash-v0.21.0/src/interface/parse_args.hpp
wfmash-v0.21.0/src/interface/temp_file.hpp
wfmash-v0.21.0/src/map/
wfmash-v0.21.0/src/map/include/
wfmash-v0.21.0/src/map/include/MIIteratorL2.hpp
wfmash-v0.21.0/src/map/include/ThreadPool.hpp
wfmash-v0.21.0/src/map/include/base_types.hpp
wfmash-v0.21.0/src/map/include/commonFunc.hpp
wfmash-v0.21.0/src/map/include/computeMap.hpp
wfmash-v0.21.0/src/map/include/filter.hpp
wfmash-v0.21.0/src/map/include/map_parameters.hpp
wfmash-v0.21.0/src/map/include/map_stats.hpp
wfmash-v0.21.0/src/map/include/parseCmdArgs.hpp
wfmash-v0.21.0/src/map/include/slidingMap.hpp
wfmash-v0.21.0/src/map/include/winSketch.hpp
wfmash-v0.21.0/src/wfmash_git_version.hpp
phase `unpack' succeeded after 0.2 seconds
starting phase `fix-cmakelists'
phase `fix-cmakelists' succeeded after 0.0 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
patch-shebang: ./scripts/fasta+paf2vcf.sh: changing `/bin/bash' to `/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin/bash'
patch-shebang: ./scripts/make_align_test_case.sh: changing `/bin/bash' to `/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin/bash'
patch-shebang: ./scripts/make_source_targball.sh: changing `/bin/bash' to `/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin/bash'
patch-shebang: ./scripts/paf+fasta2seq.sh: changing `/bin/bash' to `/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin/bash'
patch-shebang: ./scripts/paf2dotplot: warning: no binary for interpreter `perl' found in $PATH
patch-shebang: ./scripts/split_approx_mappings_in_chunks.py: warning: no binary for interpreter `python' found in $PATH
patch-shebang: ./scripts/test.sh: changing `/bin/bash' to `/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin/bash'
patch-shebang: ./scripts/wfplot.R: warning: no binary for interpreter `Rscript' found in $PATH
patch-shebang: ./src/common/wflign/deps/WFA2-lib/scripts/fasta2seq.sh: changing `/bin/bash' to `/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin/bash'
patch-shebang: ./src/common/wflign/deps/WFA2-lib/scripts/seq2fasta.sh: changing `/bin/bash' to `/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin/bash'
patch-shebang: ./src/common/wflign/deps/WFA2-lib/scripts/wfa.alg.cmp.py: warning: no binary for interpreter `python3' found in $PATH
patch-shebang: ./src/common/wflign/deps/WFA2-lib/scripts/wfa.alg.cmp.score.sh: changing `/bin/bash' to `/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin/bash'
patch-shebang: ./src/common/wflign/deps/WFA2-lib/scripts/wfa.alg.rescore.py: warning: no binary for interpreter `python3' found in $PATH
patch-shebang: ./src/common/wflign/deps/WFA2-lib/scripts/wfa.plot.py: warning: no binary for interpreter `python3' found in $PATH
patch-shebang: ./src/common/wflign/deps/WFA2-lib/tests/wfa.utest.cmp.sh: changing `/bin/bash' to `/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin/bash'
patch-shebang: ./src/common/wflign/deps/WFA2-lib/tests/wfa.utest.performance.sh: changing `/bin/bash' to `/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin/bash'
patch-shebang: ./src/common/wflign/deps/WFA2-lib/tests/wfa.utest.sh: changing `/bin/bash' to `/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin/bash'
patch-shebang: ./src/common/wflign/deps/WFA2-lib/tests/wfa.utest.valgrind.sh: changing `/bin/bash' to `/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin/bash'
phase `patch-source-shebangs' succeeded after 0.1 seconds
starting phase `configure'
source directory: "/tmp/guix-build-wfmash-0.21.0.drv-0/wfmash-v0.21.0" (relative from build: "../wfmash-v0.21.0")
build directory: "/tmp/guix-build-wfmash-0.21.0.drv-0/build"
running 'cmake' with arguments ("../wfmash-v0.21.0" "-DCMAKE_BUILD_TYPE=RelWithDebInfo" "-DCMAKE_INSTALL_PREFIX=/gnu/store/39lamg9wvvayfm8kz6hw4rpw6k9py566-wfmash-0.21.0" "-DCMAKE_INSTALL_LIBDIR=lib" "-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE" "-DCMAKE_INSTALL_RPATH=/gnu/store/39lamg9wvvayfm8kz6hw4rpw6k9py566-wfmash-0.21.0/lib" "-DCMAKE_VERBOSE_MAKEFILE=ON" "-DCMAKE_C_COMPILER=i586-pc-gnu-gcc" "-DCMAKE_CXX_COMPILER=i586-pc-gnu-g++" "-DCMAKE_SYSTEM_NAME=Linux" "-DWFA_PNG_AND_TSV=ON")
-- The C compiler identification is GNU 11.4.0
-- The CXX compiler identification is GNU 11.4.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /gnu/store/b9b3zv243k3s2ryb6y27609y3zgls82l-gcc-cross-i586-pc-gnu-11.4.0/bin/i586-pc-gnu-gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /gnu/store/b9b3zv243k3s2ryb6y27609y3zgls82l-gcc-cross-i586-pc-gnu-11.4.0/bin/i586-pc-gnu-g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Error at /gnu/store/q48wjffvyihmc6z95d0rlgkcnpk6k1nm-cmake-minimal-cross-3.24.2/share/cmake-3.24/Modules/FindPackageHandleStandardArgs.cmake:230 (message):
  Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE)
Call Stack (most recent call first):
  /gnu/store/q48wjffvyihmc6z95d0rlgkcnpk6k1nm-cmake-minimal-cross-3.24.2/share/cmake-3.24/Modules/FindPackageHandleStandardArgs.cmake:594 (_FPHSA_FAILURE_MESSAGE)
  /gnu/store/q48wjffvyihmc6z95d0rlgkcnpk6k1nm-cmake-minimal-cross-3.24.2/share/cmake-3.24/Modules/FindPkgConfig.cmake:99 (find_package_handle_standard_args)
  CMakeLists.txt:27 (find_package)


-- Configuring incomplete, errors occurred!
See also "/tmp/guix-build-wfmash-0.21.0.drv-0/build/CMakeFiles/CMakeOutput.log".
error: in phase 'configure': uncaught exception:
%exception #<&invoke-error program: "cmake" arguments: ("../wfmash-v0.21.0" "-DCMAKE_BUILD_TYPE=RelWithDebInfo" "-DCMAKE_INSTALL_PREFIX=/gnu/store/39lamg9wvvayfm8kz6hw4rpw6k9py566-wfmash-0.21.0" "-DCMAKE_INSTALL_LIBDIR=lib" "-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE" "-DCMAKE_INSTALL_RPATH=/gnu/store/39lamg9wvvayfm8kz6hw4rpw6k9py566-wfmash-0.21.0/lib" "-DCMAKE_VERBOSE_MAKEFILE=ON" "-DCMAKE_C_COMPILER=i586-pc-gnu-gcc" "-DCMAKE_CXX_COMPILER=i586-pc-gnu-g++" "-DCMAKE_SYSTEM_NAME=Linux" "-DWFA_PNG_AND_TSV=ON") exit-status: 1 term-signal: #f stop-signal: #f> 
phase `configure' failed after 2.0 seconds
command "cmake" "../wfmash-v0.21.0" "-DCMAKE_BUILD_TYPE=RelWithDebInfo" "-DCMAKE_INSTALL_PREFIX=/gnu/store/39lamg9wvvayfm8kz6hw4rpw6k9py566-wfmash-0.21.0" "-DCMAKE_INSTALL_LIBDIR=lib" "-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE" "-DCMAKE_INSTALL_RPATH=/gnu/store/39lamg9wvvayfm8kz6hw4rpw6k9py566-wfmash-0.21.0/lib" "-DCMAKE_VERBOSE_MAKEFILE=ON" "-DCMAKE_C_COMPILER=i586-pc-gnu-gcc" "-DCMAKE_CXX_COMPILER=i586-pc-gnu-g++" "-DCMAKE_SYSTEM_NAME=Linux" "-DWFA_PNG_AND_TSV=ON" failed with status 1
build process 18 exited with status 256