starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin:/gnu/store/ak70pk2hjks17cx7zjdmdmzpcpiy9gpi-freetype-2.10.4/bin:/gnu/store/p7iq81hxxyk9zy7a9dngbf16zm8d4klx-libpng-1.6.37/bin:/gnu/store/g3y6ifhm0751vgsxv90yipfw6mk189kj-libxml2-2.9.12/bin:/gnu/store/73z6hip8xdd47g31hdv5cz6k2sax9f4k-python-pyqt-5.15.2/bin:/gnu/store/rdmcf667gk6p37aq8qah2qiq7bp54rx5-netcdf-4.7.4/bin:/gnu/store/g2ajyl8xk9aarxrgjbng2hkj3qm2v0z2-tar-1.34/bin:/gnu/store/iixwcv3k49ks1rf34pjgfzmzyhhgwng3-gzip-1.10/bin:/gnu/store/s3hl12jxz9ybs7nsy7kq7ybzz7qnzmsg-bzip2-1.0.8/bin:/gnu/store/c8isj4jq6knv0icfgr43di6q3nvdzkx7-xz-5.2.5/bin:/gnu/store/4ic6244i3ca4b4rxc2wnrgllsidyishv-file-5.39/bin:/gnu/store/ahmmvw21p11ik80lg1f953y7fd8bqkjm-diffutils-3.8/bin:/gnu/store/z39hnrwds1dgcbpfgj8dnv2cngjb2xbl-patch-2.7.6/bin:/gnu/store/39rsx3nl4c31952jybbjb8d6idr5hx7r-findutils-4.8.0/bin:/gnu/store/690qz3fg334dpwn3pn6k59n4wc943p2b-gawk-5.1.0/bin:/gnu/store/wxgv6i8g0p24q5gcyzd0yr07s8kn9680-sed-4.8/bin:/gnu/store/xjwp2hsd9256icjjybfrmznppjicywf6-grep-3.6/bin:/gnu/store/d251rfgc9nm2clzffzhgiipdvfvzkvwi-coreutils-8.32/bin:/gnu/store/55cbpsi18mahg131nmiya6km5b4mscfa-make-4.3/bin:/gnu/store/4y5m9lb8k3qkb1y9m02sw9w9a6hacd16-bash-minimal-5.1.8/bin:/gnu/store/s2pg5k98fl2g2szg9dykxyd9zl3xihv9-ld-wrapper-0/bin:/gnu/store/rc781v4k0drhaqn90xfwwpspki5x0bvf-binutils-2.37/bin:/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/bin:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/bin:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/sbin:/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/bin:/gnu/store/wpnhh9q7zxpchvnlkfv3b9vkvw5d3z7x-python-sip-5.5.0/bin'
environment variable `GUIX_PYTHONPATH' set to `/gnu/store/7my837qpak6w6vk8ifd99d24kmgjyp61-python-setuptools-64.0.3/lib/python3.9/site-packages:/gnu/store/73z6hip8xdd47g31hdv5cz6k2sax9f4k-python-pyqt-5.15.2/lib/python3.9/site-packages:/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/lib/python3.9/site-packages:/gnu/store/f66957ibj39fy937aflbbbrxjrafqj6r-python-pyqt5-sip-12.8.1/lib/python3.9/site-packages:/gnu/store/wpnhh9q7zxpchvnlkfv3b9vkvw5d3z7x-python-sip-5.5.0/lib/python3.9/site-packages:/gnu/store/kxlnph6hn0clsqbbf7b0f61hw51ak2g2-python-packaging-21.3/lib/python3.9/site-packages:/gnu/store/hmyqhci2vvrnvjwm32l26kwgasz7in1w-python-toml-0.10.2/lib/python3.9/site-packages:/gnu/store/3bjjwwwbniv92j0cg8kp1h5k2q3c42n3-python-six-1.16.0/lib/python3.9/site-packages:/gnu/store/kw41zfr5s3ay2xva287lcpgzqa7bhvh1-python-pyparsing-3.0.6/lib/python3.9/site-packages'
environment variable `PYTHONTZPATH' unset
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environment variable `XML_CATALOG_FILES' unset
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/gh4cadvr37xy38lh3bnka0nr6dai6rr8-catch2-2.13.8/include:/gnu/store/ak70pk2hjks17cx7zjdmdmzpcpiy9gpi-freetype-2.10.4/include:/gnu/store/p7iq81hxxyk9zy7a9dngbf16zm8d4klx-libpng-1.6.37/include:/gnu/store/lngn61cy3b4jdcd5ax77ypp1hhzpif6r-freeglut-3.2.1/include:/gnu/store/sh6j1xz8fz7a23x5y2w05rzxjamq4x7y-glew-2.1.0/include:/gnu/store/g3y6ifhm0751vgsxv90yipfw6mk189kj-libxml2-2.9.12/include:/gnu/store/l5qyiq6196sdm61p1i9ii0mx15gdvgxk-mmtf-cpp-1.0.0/include:/gnu/store/n51b2gsasn7m09brp5vqkv17a0plkccy-msgpack-3.3.0/include:/gnu/store/hngr9i6da2ngan9cxs2q73q5h439ya1r-glm-0.9.9.8/include:/gnu/store/rdmcf667gk6p37aq8qah2qiq7bp54rx5-netcdf-4.7.4/include:/gnu/store/s3hl12jxz9ybs7nsy7kq7ybzz7qnzmsg-bzip2-1.0.8/include:/gnu/store/c8isj4jq6knv0icfgr43di6q3nvdzkx7-xz-5.2.5/include:/gnu/store/4ic6244i3ca4b4rxc2wnrgllsidyishv-file-5.39/include:/gnu/store/690qz3fg334dpwn3pn6k59n4wc943p2b-gawk-5.1.0/include:/gnu/store/55cbpsi18mahg131nmiya6km5b4mscfa-make-4.3/include:/gnu/store/rc781v4k0drhaqn90xfwwpspki5x0bvf-binutils-2.37/include:/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/include:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/include:/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include:/gnu/store/8qv5kb2fgm4c3bf70zcg9l6hkf3qzpw9-zlib-1.2.11/include:/gnu/store/wdm2s2si8fqsrcd5xpc29ivmpkf20s8d-mesa-21.3.8/include:/gnu/store/5j18ya6vm42lzxyj0n9znd59lp8492z4-glu-9.0.1/include:/gnu/store/6mjww4iz4xdan74d5bbjfh7il8rngfkk-linux-libre-headers-5.10.35/include:/gnu/store/vfak5v1d0hjgq6p845r809vrf4kplsnz-xorgproto-2021.5/include:/gnu/store/kdrl0zydxg29fxz03wff6s7nji3wp1mb-libxxf86vm-1.1.4/include:/gnu/store/hbymc5z6rpj0m1a00iglc779kdnbglf0-libxshmfence-1.3/include:/gnu/store/7rwz6yjir4ysnhskcw5k8azksjwqd6pa-libxfixes-6.0.0/include:/gnu/store/i4yh9pwl39qvl9nf8q48gmjgq3wxi36b-libxdamage-1.1.5/include:/gnu/store/fa43ijbrb96x08621qigxxiphp503lsi-libx11-1.7.3.1/include:/gnu/store/f8v7w0v3fqj2798313bpnyw2n52d34wf-libvdpau-1.4/include:/gnu/store/c1nvl9hcgl09nysmy1qqsz5ljiarxdjs-libdrm-2.4.107/include:/gnu/store/4fhg8f8c6q647v7pysbng3j30frg0hcl-libxext-1.3.4/include:/gnu/store/v8raqm2shh9azkl71107p53j55hir306-libxcb-1.14/include:/gnu/store/p30n7i9jcwzf9iz2009vfb7sgx30bv76-libpciaccess-0.16/include:/gnu/store/dfzp4rhkzqqagx3djn2kcnaflz1m8446-libxdmcp-1.1.3/include:/gnu/store/9k6slxs8ynz46h85bcy3zk2mx0nn8rpf-libxau-1.0.9/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/gh4cadvr37xy38lh3bnka0nr6dai6rr8-catch2-2.13.8/include:/gnu/store/ak70pk2hjks17cx7zjdmdmzpcpiy9gpi-freetype-2.10.4/include:/gnu/store/p7iq81hxxyk9zy7a9dngbf16zm8d4klx-libpng-1.6.37/include:/gnu/store/lngn61cy3b4jdcd5ax77ypp1hhzpif6r-freeglut-3.2.1/include:/gnu/store/sh6j1xz8fz7a23x5y2w05rzxjamq4x7y-glew-2.1.0/include:/gnu/store/g3y6ifhm0751vgsxv90yipfw6mk189kj-libxml2-2.9.12/include:/gnu/store/l5qyiq6196sdm61p1i9ii0mx15gdvgxk-mmtf-cpp-1.0.0/include:/gnu/store/n51b2gsasn7m09brp5vqkv17a0plkccy-msgpack-3.3.0/include:/gnu/store/hngr9i6da2ngan9cxs2q73q5h439ya1r-glm-0.9.9.8/include:/gnu/store/rdmcf667gk6p37aq8qah2qiq7bp54rx5-netcdf-4.7.4/include:/gnu/store/s3hl12jxz9ybs7nsy7kq7ybzz7qnzmsg-bzip2-1.0.8/include:/gnu/store/c8isj4jq6knv0icfgr43di6q3nvdzkx7-xz-5.2.5/include:/gnu/store/4ic6244i3ca4b4rxc2wnrgllsidyishv-file-5.39/include:/gnu/store/690qz3fg334dpwn3pn6k59n4wc943p2b-gawk-5.1.0/include:/gnu/store/55cbpsi18mahg131nmiya6km5b4mscfa-make-4.3/include:/gnu/store/rc781v4k0drhaqn90xfwwpspki5x0bvf-binutils-2.37/include:/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/include/c++:/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/include:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/include:/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include:/gnu/store/8qv5kb2fgm4c3bf70zcg9l6hkf3qzpw9-zlib-1.2.11/include:/gnu/store/wdm2s2si8fqsrcd5xpc29ivmpkf20s8d-mesa-21.3.8/include:/gnu/store/5j18ya6vm42lzxyj0n9znd59lp8492z4-glu-9.0.1/include:/gnu/store/6mjww4iz4xdan74d5bbjfh7il8rngfkk-linux-libre-headers-5.10.35/include:/gnu/store/vfak5v1d0hjgq6p845r809vrf4kplsnz-xorgproto-2021.5/include:/gnu/store/kdrl0zydxg29fxz03wff6s7nji3wp1mb-libxxf86vm-1.1.4/include:/gnu/store/hbymc5z6rpj0m1a00iglc779kdnbglf0-libxshmfence-1.3/include:/gnu/store/7rwz6yjir4ysnhskcw5k8azksjwqd6pa-libxfixes-6.0.0/include:/gnu/store/i4yh9pwl39qvl9nf8q48gmjgq3wxi36b-libxdamage-1.1.5/include:/gnu/store/fa43ijbrb96x08621qigxxiphp503lsi-libx11-1.7.3.1/include:/gnu/store/f8v7w0v3fqj2798313bpnyw2n52d34wf-libvdpau-1.4/include:/gnu/store/c1nvl9hcgl09nysmy1qqsz5ljiarxdjs-libdrm-2.4.107/include:/gnu/store/4fhg8f8c6q647v7pysbng3j30frg0hcl-libxext-1.3.4/include:/gnu/store/v8raqm2shh9azkl71107p53j55hir306-libxcb-1.14/include:/gnu/store/p30n7i9jcwzf9iz2009vfb7sgx30bv76-libpciaccess-0.16/include:/gnu/store/dfzp4rhkzqqagx3djn2kcnaflz1m8446-libxdmcp-1.1.3/include:/gnu/store/9k6slxs8ynz46h85bcy3zk2mx0nn8rpf-libxau-1.0.9/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/gh4cadvr37xy38lh3bnka0nr6dai6rr8-catch2-2.13.8/lib:/gnu/store/7my837qpak6w6vk8ifd99d24kmgjyp61-python-setuptools-64.0.3/lib:/gnu/store/ak70pk2hjks17cx7zjdmdmzpcpiy9gpi-freetype-2.10.4/lib:/gnu/store/p7iq81hxxyk9zy7a9dngbf16zm8d4klx-libpng-1.6.37/lib:/gnu/store/lngn61cy3b4jdcd5ax77ypp1hhzpif6r-freeglut-3.2.1/lib:/gnu/store/sh6j1xz8fz7a23x5y2w05rzxjamq4x7y-glew-2.1.0/lib:/gnu/store/g3y6ifhm0751vgsxv90yipfw6mk189kj-libxml2-2.9.12/lib:/gnu/store/n51b2gsasn7m09brp5vqkv17a0plkccy-msgpack-3.3.0/lib:/gnu/store/73z6hip8xdd47g31hdv5cz6k2sax9f4k-python-pyqt-5.15.2/lib:/gnu/store/hngr9i6da2ngan9cxs2q73q5h439ya1r-glm-0.9.9.8/lib:/gnu/store/rdmcf667gk6p37aq8qah2qiq7bp54rx5-netcdf-4.7.4/lib:/gnu/store/s3hl12jxz9ybs7nsy7kq7ybzz7qnzmsg-bzip2-1.0.8/lib:/gnu/store/c8isj4jq6knv0icfgr43di6q3nvdzkx7-xz-5.2.5/lib:/gnu/store/4ic6244i3ca4b4rxc2wnrgllsidyishv-file-5.39/lib:/gnu/store/690qz3fg334dpwn3pn6k59n4wc943p2b-gawk-5.1.0/lib:/gnu/store/rc781v4k0drhaqn90xfwwpspki5x0bvf-binutils-2.37/lib:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/lib:/gnu/store/4jdghmc65q7i7ib89zmvq66l0ghf7jc4-glibc-2.33-static/lib:/gnu/store/fnr1z6xsan0437r0yg48d0y8k32kqxby-glibc-utf8-locales-2.33/lib:/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/lib:/gnu/store/8qv5kb2fgm4c3bf70zcg9l6hkf3qzpw9-zlib-1.2.11/lib:/gnu/store/wdm2s2si8fqsrcd5xpc29ivmpkf20s8d-mesa-21.3.8/lib:/gnu/store/5j18ya6vm42lzxyj0n9znd59lp8492z4-glu-9.0.1/lib:/gnu/store/f66957ibj39fy937aflbbbrxjrafqj6r-python-pyqt5-sip-12.8.1/lib:/gnu/store/wpnhh9q7zxpchvnlkfv3b9vkvw5d3z7x-python-sip-5.5.0/lib:/gnu/store/kdrl0zydxg29fxz03wff6s7nji3wp1mb-libxxf86vm-1.1.4/lib:/gnu/store/hbymc5z6rpj0m1a00iglc779kdnbglf0-libxshmfence-1.3/lib:/gnu/store/7rwz6yjir4ysnhskcw5k8azksjwqd6pa-libxfixes-6.0.0/lib:/gnu/store/i4yh9pwl39qvl9nf8q48gmjgq3wxi36b-libxdamage-1.1.5/lib:/gnu/store/fa43ijbrb96x08621qigxxiphp503lsi-libx11-1.7.3.1/lib:/gnu/store/f8v7w0v3fqj2798313bpnyw2n52d34wf-libvdpau-1.4/lib:/gnu/store/c1nvl9hcgl09nysmy1qqsz5ljiarxdjs-libdrm-2.4.107/lib:/gnu/store/kxlnph6hn0clsqbbf7b0f61hw51ak2g2-python-packaging-21.3/lib:/gnu/store/hmyqhci2vvrnvjwm32l26kwgasz7in1w-python-toml-0.10.2/lib:/gnu/store/l7kl3m89czk3nnknx4ljn7gdxhvxlyfa-util-macros-1.19.3/lib:/gnu/store/4fhg8f8c6q647v7pysbng3j30frg0hcl-libxext-1.3.4/lib:/gnu/store/v8raqm2shh9azkl71107p53j55hir306-libxcb-1.14/lib:/gnu/store/p30n7i9jcwzf9iz2009vfb7sgx30bv76-libpciaccess-0.16/lib:/gnu/store/3bjjwwwbniv92j0cg8kp1h5k2q3c42n3-python-six-1.16.0/lib:/gnu/store/kw41zfr5s3ay2xva287lcpgzqa7bhvh1-python-pyparsing-3.0.6/lib:/gnu/store/dfzp4rhkzqqagx3djn2kcnaflz1m8446-libxdmcp-1.1.3/lib:/gnu/store/9k6slxs8ynz46h85bcy3zk2mx0nn8rpf-libxau-1.0.9/lib:/gnu/store/9pdhgsdmnddgdnwpn0jalp1ryyjjkp56-libpthread-stubs-0.4/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/fnr1z6xsan0437r0yg48d0y8k32kqxby-glibc-utf8-locales-2.33/lib/locale'
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'en_US.utf8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/.gitattributes' -> `./.gitattributes'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/.gitignore' -> `./.gitignore'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/AUTHORS' -> `./AUTHORS'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/ChangeLog' -> `./ChangeLog'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/DEVELOPERS' -> `./DEVELOPERS'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/INSTALL' -> `./INSTALL'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/LICENSE' -> `./LICENSE'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/PACKAGING' -> `./PACKAGING'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/README' -> `./README'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/README.md' -> `./README.md'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/create_shadertext.py' -> `./create_shadertext.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/monkeypatch_distutils.py' -> `./monkeypatch_distutils.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/setup.py' -> `./setup.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/test/dat/1tii.pdb' -> `./test/dat/1tii.pdb'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/test/dat/3al1.pdb' -> `./test/dat/3al1.pdb'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/test/dat/3al1.r3d' -> `./test/dat/3al1.r3d'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/test/dat/embed01.p1m' -> `./test/dat/embed01.p1m'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/test/dat/embed02.p1m' -> `./test/dat/embed02.p1m'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/test/dat/embed03.p1m' -> `./test/dat/embed03.p1m'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/test/dat/embed04.p1m' -> `./test/dat/embed04.p1m'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/test/dat/embed05.p1m' -> `./test/dat/embed05.p1m'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/test/dat/embed06.p1m' -> `./test/dat/embed06.p1m'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/test/dat/helix_amber.pdb' -> `./test/dat/helix_amber.pdb'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/test/dat/il2.pdb' -> `./test/dat/il2.pdb'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/test/dat/ligs3d.sdf' -> `./test/dat/ligs3d.sdf'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/test/dat/names.pdb' -> `./test/dat/names.pdb'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/test/dat/odd01.pdb' -> `./test/dat/odd01.pdb'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/test/dat/odd02.pdb' -> `./test/dat/odd02.pdb'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/test/dat/pept.pdb' -> `./test/dat/pept.pdb'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/test/dat/pept.pkl' -> `./test/dat/pept.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/test/dat/pept.r3d' -> `./test/dat/pept.r3d'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/test/dat/small01.mol' -> `./test/dat/small01.mol'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/test/dat/small02.pdb' -> `./test/dat/small02.pdb'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/test/dat/small03.mol2' -> `./test/dat/small03.mol2'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/test/dat/tiny.pdb' -> `./test/dat/tiny.pdb'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/test/dat/water.pdb' -> `./test/dat/water.pdb'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/ov/src/OVContext.cpp' -> `./ov/src/OVContext.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/ov/src/OVContext.h' -> `./ov/src/OVContext.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/ov/src/OVHeap.cpp' -> `./ov/src/OVHeap.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/ov/src/OVHeap.h' -> `./ov/src/OVHeap.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/ov/src/OVHeapArray.cpp' -> `./ov/src/OVHeapArray.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/ov/src/OVHeapArray.h' -> `./ov/src/OVHeapArray.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/ov/src/OVLexicon.cpp' -> `./ov/src/OVLexicon.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/ov/src/OVLexicon.h' -> `./ov/src/OVLexicon.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/ov/src/OVOneToAny.cpp' -> `./ov/src/OVOneToAny.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/ov/src/OVOneToAny.h' -> `./ov/src/OVOneToAny.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/ov/src/OVOneToOne.cpp' -> `./ov/src/OVOneToOne.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/ov/src/OVOneToOne.h' -> `./ov/src/OVOneToOne.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/ov/src/OVRandom.cpp' -> `./ov/src/OVRandom.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/ov/src/OVRandom.h' -> `./ov/src/OVRandom.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/ov/src/OVreturns.h' -> `./ov/src/OVreturns.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/ov/src/ov_defines.h' -> `./ov/src/ov_defines.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/ov/src/ov_port.h' -> `./ov/src/ov_port.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/ov/src/ov_status.h' -> `./ov/src/ov_status.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/ov/src/ov_types.h' -> `./ov/src/ov_types.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/ov/src/ov_utility.cpp' -> `./ov/src/ov_utility.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/ov/src/ov_utility.h' -> `./ov/src/ov_utility.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/javascript/json2.js' -> `./modules/web/javascript/json2.js'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/javascript/pymol.js' -> `./modules/web/javascript/pymol.js'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/__init__.py' -> `./modules/web/examples/__init__.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/index.html' -> `./modules/web/examples/index.html'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/justhttpd.py' -> `./modules/web/examples/justhttpd.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample16/index.html' -> `./modules/web/examples/sample16/index.html'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample16/json2.js' -> `./modules/web/examples/sample16/json2.js'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample16/pymol.js' -> `./modules/web/examples/sample16/pymol.js'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample16/start8086.pwg' -> `./modules/web/examples/sample16/start8086.pwg'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample15/index.html' -> `./modules/web/examples/sample15/index.html'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample15/json2.js' -> `./modules/web/examples/sample15/json2.js'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample15/pymol.js' -> `./modules/web/examples/sample15/pymol.js'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample15/start8085.pwg' -> `./modules/web/examples/sample15/start8085.pwg'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample15/start8086.pwg' -> `./modules/web/examples/sample15/start8086.pwg'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample14/index.html' -> `./modules/web/examples/sample14/index.html'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample14/json2.js' -> `./modules/web/examples/sample14/json2.js'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample14/pymol.js' -> `./modules/web/examples/sample14/pymol.js'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample14/start8084.pwg' -> `./modules/web/examples/sample14/start8084.pwg'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample13/index.html' -> `./modules/web/examples/sample13/index.html'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample13/jquery.js' -> `./modules/web/examples/sample13/jquery.js'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample13/start8083.pwg' -> `./modules/web/examples/sample13/start8083.pwg'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample12/index.html' -> `./modules/web/examples/sample12/index.html'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample12/json2.js' -> `./modules/web/examples/sample12/json2.js'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample12/pymol.js' -> `./modules/web/examples/sample12/pymol.js'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample12/start8082.pwg' -> `./modules/web/examples/sample12/start8082.pwg'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample11/index.html' -> `./modules/web/examples/sample11/index.html'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample11/start8081.pwg' -> `./modules/web/examples/sample11/start8081.pwg'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample08/start.pwg' -> `./modules/web/examples/sample08/start.pwg'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample08/htdocs/index.html' -> `./modules/web/examples/sample08/htdocs/index.html'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample08/htdocs/json2.js' -> `./modules/web/examples/sample08/htdocs/json2.js'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample08/htdocs/pymol.js' -> `./modules/web/examples/sample08/htdocs/pymol.js'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample07/start.pwg' -> `./modules/web/examples/sample07/start.pwg'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample07/htdocs/index.html' -> `./modules/web/examples/sample07/htdocs/index.html'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample07/htdocs/test.html' -> `./modules/web/examples/sample07/htdocs/test.html'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample06/start.pwg' -> `./modules/web/examples/sample06/start.pwg'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample06/htdocs/index.html' -> `./modules/web/examples/sample06/htdocs/index.html'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample06/htdocs/json2.js' -> `./modules/web/examples/sample06/htdocs/json2.js'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample06/htdocs/pymol.js' -> `./modules/web/examples/sample06/htdocs/pymol.js'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample05/start.pwg' -> `./modules/web/examples/sample05/start.pwg'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample05/htdocs/index.html' -> `./modules/web/examples/sample05/htdocs/index.html'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample04/start.pwg' -> `./modules/web/examples/sample04/start.pwg'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample04/htdocs/626.jpg' -> `./modules/web/examples/sample04/htdocs/626.jpg'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample04/htdocs/I5S.jpg' -> `./modules/web/examples/sample04/htdocs/I5S.jpg'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample04/htdocs/R69.jpg' -> `./modules/web/examples/sample04/htdocs/R69.jpg'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample04/htdocs/hash.js' -> `./modules/web/examples/sample04/htdocs/hash.js'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample04/htdocs/index.html' -> `./modules/web/examples/sample04/htdocs/index.html'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample04/htdocs/json2.js' -> `./modules/web/examples/sample04/htdocs/json2.js'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample04/htdocs/pdbshow.js' -> `./modules/web/examples/sample04/htdocs/pdbshow.js'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample03/start.pwg' -> `./modules/web/examples/sample03/start.pwg'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample03/htdocs/index.html' -> `./modules/web/examples/sample03/htdocs/index.html'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample02/start.pwg' -> `./modules/web/examples/sample02/start.pwg'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample02/htdocs/index.html' -> `./modules/web/examples/sample02/htdocs/index.html'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample01/start.pwg' -> `./modules/web/examples/sample01/start.pwg'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample01/htdocs/api.html' -> `./modules/web/examples/sample01/htdocs/api.html'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample01/htdocs/header.html' -> `./modules/web/examples/sample01/htdocs/header.html'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample01/htdocs/index.html' -> `./modules/web/examples/sample01/htdocs/index.html'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/sample01/htdocs/result.html' -> `./modules/web/examples/sample01/htdocs/result.html'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/data/1iqj.pdb' -> `./modules/web/examples/data/1iqj.pdb'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/data/1xh4.pdb.gz' -> `./modules/web/examples/data/1xh4.pdb.gz'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/data/1xh9.pdb.gz' -> `./modules/web/examples/data/1xh9.pdb.gz'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/data/2c1a.pdb.gz' -> `./modules/web/examples/data/2c1a.pdb.gz'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/data/2fzz.pdb' -> `./modules/web/examples/data/2fzz.pdb'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/data/2g00.pdb' -> `./modules/web/examples/data/2g00.pdb'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/data/2j4z_AZ.pdb.gz' -> `./modules/web/examples/data/2j4z_AZ.pdb.gz'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/data/2j4z_BY.pdb.gz' -> `./modules/web/examples/data/2j4z_BY.pdb.gz'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/data/2jdo.pdb.gz' -> `./modules/web/examples/data/2jdo.pdb.gz'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/data/2jdt.pdb.gz' -> `./modules/web/examples/data/2jdt.pdb.gz'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/data/2owb.pdb.gz' -> `./modules/web/examples/data/2owb.pdb.gz'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/data/map.ccp4' -> `./modules/web/examples/data/map.ccp4'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/data/ref.pdb' -> `./modules/web/examples/data/ref.pdb'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/content/SOP.html' -> `./modules/web/examples/content/SOP.html'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/content/mime1.jpg' -> `./modules/web/examples/content/mime1.jpg'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/content/mime2.jpg' -> `./modules/web/examples/content/mime2.jpg'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/content/pwg.html' -> `./modules/web/examples/content/pwg.html'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/content/reference.html' -> `./modules/web/examples/content/reference.html'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/content/requests.html' -> `./modules/web/examples/content/requests.html'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/content/running.html' -> `./modules/web/examples/content/running.html'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/content/server.html' -> `./modules/web/examples/content/server.html'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/web/examples/content/summary.html' -> `./modules/web/examples/content/summary.html'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol2/__init__.py' -> `./modules/pymol2/__init__.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol2/cmd2.py' -> `./modules/pymol2/cmd2.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/__init__.py' -> `./modules/pymol/__init__.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/__main__.py' -> `./modules/pymol/__main__.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/_gui.py' -> `./modules/pymol/_gui.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/api.py' -> `./modules/pymol/api.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/callback.py' -> `./modules/pymol/callback.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/cgo.py' -> `./modules/pymol/cgo.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/checking.py' -> `./modules/pymol/checking.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/cmd.py' -> `./modules/pymol/cmd.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/colorprinting.py' -> `./modules/pymol/colorprinting.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/colorramping.py' -> `./modules/pymol/colorramping.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/commanding.py' -> `./modules/pymol/commanding.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/completing.py' -> `./modules/pymol/completing.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/computing.py' -> `./modules/pymol/computing.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/constants.py' -> `./modules/pymol/constants.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/constants_palette.py' -> `./modules/pymol/constants_palette.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/controlling.py' -> `./modules/pymol/controlling.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/creating.py' -> `./modules/pymol/creating.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/diagnosing.py' -> `./modules/pymol/diagnosing.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/editing.py' -> `./modules/pymol/editing.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/editor.py' -> `./modules/pymol/editor.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/experimenting.py' -> `./modules/pymol/experimenting.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/exporting.py' -> `./modules/pymol/exporting.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/externing.py' -> `./modules/pymol/externing.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/feedingback.py' -> `./modules/pymol/feedingback.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/fitting.py' -> `./modules/pymol/fitting.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/gui.py' -> `./modules/pymol/gui.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/headering.py' -> `./modules/pymol/headering.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/helping.py' -> `./modules/pymol/helping.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/importing.py' -> `./modules/pymol/importing.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/internal.py' -> `./modules/pymol/internal.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/invocation.py' -> `./modules/pymol/invocation.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/keyboard.py' -> `./modules/pymol/keyboard.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/keywords.py' -> `./modules/pymol/keywords.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/lazyio.py' -> `./modules/pymol/lazyio.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/locking.py' -> `./modules/pymol/locking.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/menu.py' -> `./modules/pymol/menu.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/monitoring.py' -> `./modules/pymol/monitoring.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/morphing.py' -> `./modules/pymol/morphing.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/movie.py' -> `./modules/pymol/movie.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/moving.py' -> `./modules/pymol/moving.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/mpeg_encode.py' -> `./modules/pymol/mpeg_encode.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/parser.py' -> `./modules/pymol/parser.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/parsing.py' -> `./modules/pymol/parsing.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/povray.py' -> `./modules/pymol/povray.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/preset.py' -> `./modules/pymol/preset.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/pymolhttpd.py' -> `./modules/pymol/pymolhttpd.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/querying.py' -> `./modules/pymol/querying.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/rpc.py' -> `./modules/pymol/rpc.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/save_shortcut.py' -> `./modules/pymol/save_shortcut.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/selecting.py' -> `./modules/pymol/selecting.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/selector.py' -> `./modules/pymol/selector.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/seqalign.py' -> `./modules/pymol/seqalign.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/setting.py' -> `./modules/pymol/setting.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/shortcut.py' -> `./modules/pymol/shortcut.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/shortcut_dict.py' -> `./modules/pymol/shortcut_dict.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/shortcut_manager.py' -> `./modules/pymol/shortcut_manager.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/util.py' -> `./modules/pymol/util.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/vfont.py' -> `./modules/pymol/vfont.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/viewing.py' -> `./modules/pymol/viewing.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/wizarding.py' -> `./modules/pymol/wizarding.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/xray.py' -> `./modules/pymol/xray.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/xwin.py' -> `./modules/pymol/xwin.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/wizard/__init__.py' -> `./modules/pymol/wizard/__init__.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/wizard/annotation.py' -> `./modules/pymol/wizard/annotation.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/wizard/appearance.py' -> `./modules/pymol/wizard/appearance.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/wizard/benchmark.py' -> `./modules/pymol/wizard/benchmark.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/wizard/box.py' -> `./modules/pymol/wizard/box.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/wizard/charge.py' -> `./modules/pymol/wizard/charge.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/wizard/cleanup.py' -> `./modules/pymol/wizard/cleanup.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/wizard/command.py' -> `./modules/pymol/wizard/command.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/wizard/demo.py' -> `./modules/pymol/wizard/demo.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/wizard/density.py' -> `./modules/pymol/wizard/density.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/wizard/distance.py' -> `./modules/pymol/wizard/distance.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/wizard/dragging.py' -> `./modules/pymol/wizard/dragging.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/wizard/filter.py' -> `./modules/pymol/wizard/filter.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/wizard/label.py' -> `./modules/pymol/wizard/label.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/wizard/measurement.py' -> `./modules/pymol/wizard/measurement.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/wizard/message.py' -> `./modules/pymol/wizard/message.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/wizard/mutagenesis.py' -> `./modules/pymol/wizard/mutagenesis.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/wizard/nucmutagenesis.py' -> `./modules/pymol/wizard/nucmutagenesis.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/wizard/openvr.py' -> `./modules/pymol/wizard/openvr.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/wizard/pair_fit.py' -> `./modules/pymol/wizard/pair_fit.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/wizard/pseudoatom.py' -> `./modules/pymol/wizard/pseudoatom.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/wizard/renaming.py' -> `./modules/pymol/wizard/renaming.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/wizard/sculpting.py' -> `./modules/pymol/wizard/sculpting.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/wizard/security.py' -> `./modules/pymol/wizard/security.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/wizard/stereodemo.py' -> `./modules/pymol/wizard/stereodemo.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/wizard/toggle.py' -> `./modules/pymol/wizard/toggle.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/stereochemistry/__init__.py' -> `./modules/pymol/stereochemistry/__init__.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/plugins/__init__.py' -> `./modules/pymol/plugins/__init__.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/plugins/installation.py' -> `./modules/pymol/plugins/installation.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/plugins/legacysupport.py' -> `./modules/pymol/plugins/legacysupport.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/plugins/managergui.py' -> `./modules/pymol/plugins/managergui.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/plugins/managergui_qt.py' -> `./modules/pymol/plugins/managergui_qt.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/plugins/repository.py' -> `./modules/pymol/plugins/repository.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/Qt/__init__.py' -> `./modules/pymol/Qt/__init__.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pymol/Qt/utils.py' -> `./modules/pymol/Qt/utils.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_tk/ColorEditor.py' -> `./modules/pmg_tk/ColorEditor.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_tk/Demo.py' -> `./modules/pmg_tk/Demo.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_tk/PMGApp.py' -> `./modules/pmg_tk/PMGApp.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_tk/PyMOLMapLoad.py' -> `./modules/pmg_tk/PyMOLMapLoad.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_tk/SetEditor.py' -> `./modules/pmg_tk/SetEditor.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_tk/Setting.py' -> `./modules/pmg_tk/Setting.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_tk/TextEditor.py' -> `./modules/pmg_tk/TextEditor.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_tk/__init__.py' -> `./modules/pmg_tk/__init__.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_tk/volume.py' -> `./modules/pmg_tk/volume.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_tk/startup/__init__.py' -> `./modules/pmg_tk/startup/__init__.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_tk/skins/__init__.py' -> `./modules/pmg_tk/skins/__init__.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_tk/skins/normal/ModalWindow.py' -> `./modules/pmg_tk/skins/normal/ModalWindow.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_tk/skins/normal/__init__.py' -> `./modules/pmg_tk/skins/normal/__init__.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_tk/skins/normal/builder.py' -> `./modules/pmg_tk/skins/normal/builder.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_tk/skins/demo/__init__.py' -> `./modules/pmg_tk/skins/demo/__init__.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/TextEditor.py' -> `./modules/pmg_qt/TextEditor.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/__init__.py' -> `./modules/pmg_qt/__init__.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/advanced_settings_gui.py' -> `./modules/pmg_qt/advanced_settings_gui.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/builder.py' -> `./modules/pmg_qt/builder.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/file_dialogs.py' -> `./modules/pmg_qt/file_dialogs.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/keymapping.py' -> `./modules/pmg_qt/keymapping.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/mimic_pmg_tk.py' -> `./modules/pmg_qt/mimic_pmg_tk.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/mimic_tk.py' -> `./modules/pmg_qt/mimic_tk.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/properties_dialog.py' -> `./modules/pmg_qt/properties_dialog.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/pymol_gl_widget.py' -> `./modules/pmg_qt/pymol_gl_widget.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/pymol_qt_gui.py' -> `./modules/pmg_qt/pymol_qt_gui.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/shortcut_menu_gui.py' -> `./modules/pmg_qt/shortcut_menu_gui.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/volume.py' -> `./modules/pmg_qt/volume.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/syntax/__init__.py' -> `./modules/pmg_qt/syntax/__init__.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/syntax/pml.py' -> `./modules/pmg_qt/syntax/pml.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/syntax/pmlparser.py' -> `./modules/pmg_qt/syntax/pmlparser.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/syntax/python.py' -> `./modules/pmg_qt/syntax/python.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/forms/__init__.py' -> `./modules/pmg_qt/forms/__init__.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/forms/askpartial.ui' -> `./modules/pmg_qt/forms/askpartial.ui'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/forms/change_confirm.ui' -> `./modules/pmg_qt/forms/change_confirm.ui'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/forms/colors.ui' -> `./modules/pmg_qt/forms/colors.ui'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/forms/create_shortcut.ui' -> `./modules/pmg_qt/forms/create_shortcut.ui'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/forms/fetch.ui' -> `./modules/pmg_qt/forms/fetch.ui'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/forms/help_shortcut.ui' -> `./modules/pmg_qt/forms/help_shortcut.ui'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/forms/load_aln.ui' -> `./modules/pmg_qt/forms/load_aln.ui'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/forms/load_mae.ui' -> `./modules/pmg_qt/forms/load_mae.ui'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/forms/load_map.ui' -> `./modules/pmg_qt/forms/load_map.ui'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/forms/load_mtz.ui' -> `./modules/pmg_qt/forms/load_mtz.ui'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/forms/load_traj.ui' -> `./modules/pmg_qt/forms/load_traj.ui'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/forms/movieexport.ui' -> `./modules/pmg_qt/forms/movieexport.ui'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/forms/pluginitem.ui' -> `./modules/pmg_qt/forms/pluginitem.ui'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/forms/pluginmanager.ui' -> `./modules/pmg_qt/forms/pluginmanager.ui'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/forms/png.ui' -> `./modules/pmg_qt/forms/png.ui'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/forms/props.ui' -> `./modules/pmg_qt/forms/props.ui'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/forms/render.ui' -> `./modules/pmg_qt/forms/render.ui'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/forms/save_molecule.ui' -> `./modules/pmg_qt/forms/save_molecule.ui'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/forms/save_object.ui' -> `./modules/pmg_qt/forms/save_object.ui'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/pmg_qt/forms/shortcut_menu.ui' -> `./modules/pmg_qt/forms/shortcut_menu.ui'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/__init__.py' -> `./modules/chempy/__init__.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/arc.py' -> `./modules/chempy/arc.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/bond_amber.py' -> `./modules/chempy/bond_amber.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/bond_mmff.py' -> `./modules/chempy/bond_mmff.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/bonds.py' -> `./modules/chempy/bonds.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/brick.py' -> `./modules/chempy/brick.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/cc1.py' -> `./modules/chempy/cc1.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/charge.py' -> `./modules/chempy/charge.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/cif.py' -> `./modules/chempy/cif.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/cpv.py' -> `./modules/chempy/cpv.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/dictdb.py' -> `./modules/chempy/dictdb.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/gamess1.py' -> `./modules/chempy/gamess1.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/gms.py' -> `./modules/chempy/gms.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/hetatm.py' -> `./modules/chempy/hetatm.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/io.py' -> `./modules/chempy/io.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/lst.py' -> `./modules/chempy/lst.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/mae.py' -> `./modules/chempy/mae.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/map.py' -> `./modules/chempy/map.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/mass.py' -> `./modules/chempy/mass.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/mmd.py' -> `./modules/chempy/mmd.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/models.py' -> `./modules/chempy/models.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/mol.py' -> `./modules/chempy/mol.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/mol2.py' -> `./modules/chempy/mol2.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/neighbor.py' -> `./modules/chempy/neighbor.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/pdb.py' -> `./modules/chempy/pdb.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/pkl.py' -> `./modules/chempy/pkl.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/place.py' -> `./modules/chempy/place.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/protein.py' -> `./modules/chempy/protein.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/protein_amber.py' -> `./modules/chempy/protein_amber.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/protein_amber99.py' -> `./modules/chempy/protein_amber99.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/protein_mmff.py' -> `./modules/chempy/protein_mmff.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/protein_residues.py' -> `./modules/chempy/protein_residues.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/sdf.py' -> `./modules/chempy/sdf.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/solvate.py' -> `./modules/chempy/solvate.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/water_amber.py' -> `./modules/chempy/water_amber.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/water_residues.py' -> `./modules/chempy/water_residues.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/xyz.py' -> `./modules/chempy/xyz.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/tinker/__init__.py' -> `./modules/chempy/tinker/__init__.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/tinker/amber.py' -> `./modules/chempy/tinker/amber.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/tinker/keyword.py' -> `./modules/chempy/tinker/keyword.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/tinker/realtime.py' -> `./modules/chempy/tinker/realtime.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/tinker/state.py' -> `./modules/chempy/tinker/state.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/mmtf/__init__.py' -> `./modules/chempy/mmtf/__init__.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/mmtf/io.py' -> `./modules/chempy/mmtf/io.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/fragments/__init__.py' -> `./modules/chempy/fragments/__init__.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/fast/__init__.py' -> `./modules/chempy/fast/__init__.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/champ/__init__.py' -> `./modules/chempy/champ/__init__.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/champ/amber99.py' -> `./modules/chempy/champ/amber99.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/champ/assign.py' -> `./modules/chempy/champ/assign.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/champ/formal_charges.py' -> `./modules/chempy/champ/formal_charges.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/bmin/__init__.py' -> `./modules/chempy/bmin/__init__.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/bmin/commands.py' -> `./modules/chempy/bmin/commands.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/bmin/realtime.py' -> `./modules/chempy/bmin/realtime.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/bmin/state.py' -> `./modules/chempy/bmin/state.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/modules/chempy/bmin/util.py' -> `./modules/chempy/bmin/util.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layerCTest/Test.cpp' -> `./layerCTest/Test.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layerCTest/Test.h' -> `./layerCTest/Test.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layerCTest/TestCmdTest2.h' -> `./layerCTest/TestCmdTest2.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layerCTest/Test_Algorithm.cpp' -> `./layerCTest/Test_Algorithm.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layerCTest/Test_CCrystal.cpp' -> `./layerCTest/Test_CCrystal.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layerCTest/Test_CifFile.cpp' -> `./layerCTest/Test_CifFile.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layerCTest/Test_Classic_VLA.cpp' -> `./layerCTest/Test_Classic_VLA.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layerCTest/Test_Image.cpp' -> `./layerCTest/Test_Image.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layerCTest/Test_List.cpp' -> `./layerCTest/Test_List.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layerCTest/Test_Picking.cpp' -> `./layerCTest/Test_Picking.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layerCTest/Test_Result.cpp' -> `./layerCTest/Test_Result.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layerCTest/Test_ScrollBar.cpp' -> `./layerCTest/Test_ScrollBar.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layerCTest/Test_SymOp.cpp' -> `./layerCTest/Test_SymOp.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layerCTest/Test_Test.cpp' -> `./layerCTest/Test_Test.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layerCTest/Test_Util.cpp' -> `./layerCTest/Test_Util.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layerCTest/Test_VLA.cpp' -> `./layerCTest/Test_VLA.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layerCTest/Test_cache_ptr.cpp' -> `./layerCTest/Test_cache_ptr.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layerCTest/Test_copyable_ptr.cpp' -> `./layerCTest/Test_copyable_ptr.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layerCTest/Test_type_traits.cpp' -> `./layerCTest/Test_type_traits.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layerCTest/Test_zstring_view.cpp' -> `./layerCTest/Test_zstring_view.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer5/PyMOL.cpp' -> `./layer5/PyMOL.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer5/PyMOL.h' -> `./layer5/PyMOL.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer5/TestPyMOL.cpp' -> `./layer5/TestPyMOL.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer5/TestPyMOL.h' -> `./layer5/TestPyMOL.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer5/main.cpp' -> `./layer5/main.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer5/main.h' -> `./layer5/main.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer4/Cmd.cpp' -> `./layer4/Cmd.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer4/Cmd.h' -> `./layer4/Cmd.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer4/Menu.cpp' -> `./layer4/Menu.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer4/Menu.h' -> `./layer4/Menu.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer4/PopUp.cpp' -> `./layer4/PopUp.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer4/PopUp.h' -> `./layer4/PopUp.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/AtomIterators.cpp' -> `./layer3/AtomIterators.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/AtomIterators.h' -> `./layer3/AtomIterators.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/CifDataValueFormatter.cpp' -> `./layer3/CifDataValueFormatter.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/CifDataValueFormatter.h' -> `./layer3/CifDataValueFormatter.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/Editor.cpp' -> `./layer3/Editor.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/Editor.h' -> `./layer3/Editor.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/Executive.cpp' -> `./layer3/Executive.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/Executive.h' -> `./layer3/Executive.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/ExecutiveDef.h' -> `./layer3/ExecutiveDef.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/ExecutiveLoad.h' -> `./layer3/ExecutiveLoad.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/ExecutivePython.cpp' -> `./layer3/ExecutivePython.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/ExecutivePython.h' -> `./layer3/ExecutivePython.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/Executive_pre.h' -> `./layer3/Executive_pre.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/MaeExportHelpers.cpp' -> `./layer3/MaeExportHelpers.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/MaeExportHelpers.h' -> `./layer3/MaeExportHelpers.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/MoleculeExporter.cpp' -> `./layer3/MoleculeExporter.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/MoleculeExporter.h' -> `./layer3/MoleculeExporter.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/MovieScene.cpp' -> `./layer3/MovieScene.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/MovieScene.h' -> `./layer3/MovieScene.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/PlugIOManager.cpp' -> `./layer3/PlugIOManager.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/PlugIOManager.h' -> `./layer3/PlugIOManager.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/RingFinder.cpp' -> `./layer3/RingFinder.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/RingFinder.h' -> `./layer3/RingFinder.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/Seeker.cpp' -> `./layer3/Seeker.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/Seeker.h' -> `./layer3/Seeker.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/Selector.cpp' -> `./layer3/Selector.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/Selector.h' -> `./layer3/Selector.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/SelectorDef.h' -> `./layer3/SelectorDef.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/SelectorTmp.cpp' -> `./layer3/SelectorTmp.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/SpecRec.cpp' -> `./layer3/SpecRec.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/SpecRec.h' -> `./layer3/SpecRec.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/SpecRecSpecial.cpp' -> `./layer3/SpecRecSpecial.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer3/SpecRecSpecial.h' -> `./layer3/SpecRecSpecial.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/AssemblyHelpers.cpp' -> `./layer2/AssemblyHelpers.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/AssemblyHelpers.h' -> `./layer2/AssemblyHelpers.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/AtomInfo.cpp' -> `./layer2/AtomInfo.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/AtomInfo.h' -> `./layer2/AtomInfo.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/AtomInfoHistory.cpp' -> `./layer2/AtomInfoHistory.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/AtomInfoHistory.h' -> `./layer2/AtomInfoHistory.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/AtomNeighbors.h' -> `./layer2/AtomNeighbors.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/BondTypeHistory.cpp' -> `./layer2/BondTypeHistory.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/BondTypeHistory.h' -> `./layer2/BondTypeHistory.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/CifBondDict.h' -> `./layer2/CifBondDict.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/CifFile.cpp' -> `./layer2/CifFile.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/CifFile.h' -> `./layer2/CifFile.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/CifMoleculeReader.cpp' -> `./layer2/CifMoleculeReader.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/CoordSet.cpp' -> `./layer2/CoordSet.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/CoordSet.h' -> `./layer2/CoordSet.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/DistSet.cpp' -> `./layer2/DistSet.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/DistSet.h' -> `./layer2/DistSet.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/GadgetSet.cpp' -> `./layer2/GadgetSet.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/GadgetSet.h' -> `./layer2/GadgetSet.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/HydrogenAdder.cpp' -> `./layer2/HydrogenAdder.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/HydrogenAdder.h' -> `./layer2/HydrogenAdder.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/MmodTyping.cpp' -> `./layer2/MmodTyping.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/MmodTyping.h' -> `./layer2/MmodTyping.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/MmtfMoleculeReader.cpp' -> `./layer2/MmtfMoleculeReader.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/Mol2Typing.cpp' -> `./layer2/Mol2Typing.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/Mol2Typing.h' -> `./layer2/Mol2Typing.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/MolV3000.cpp' -> `./layer2/MolV3000.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/MolV3000.h' -> `./layer2/MolV3000.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectAlignment.cpp' -> `./layer2/ObjectAlignment.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectAlignment.h' -> `./layer2/ObjectAlignment.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectCGO.cpp' -> `./layer2/ObjectCGO.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectCGO.h' -> `./layer2/ObjectCGO.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectCallback.cpp' -> `./layer2/ObjectCallback.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectCallback.h' -> `./layer2/ObjectCallback.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectDist.cpp' -> `./layer2/ObjectDist.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectDist.h' -> `./layer2/ObjectDist.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectGadget.cpp' -> `./layer2/ObjectGadget.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectGadget.h' -> `./layer2/ObjectGadget.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectGadgetRamp.cpp' -> `./layer2/ObjectGadgetRamp.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectGadgetRamp.h' -> `./layer2/ObjectGadgetRamp.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectGroup.cpp' -> `./layer2/ObjectGroup.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectGroup.h' -> `./layer2/ObjectGroup.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectMap.cpp' -> `./layer2/ObjectMap.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectMap.h' -> `./layer2/ObjectMap.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectMesh.cpp' -> `./layer2/ObjectMesh.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectMesh.h' -> `./layer2/ObjectMesh.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectMolecule.cpp' -> `./layer2/ObjectMolecule.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectMolecule.h' -> `./layer2/ObjectMolecule.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectMolecule2.cpp' -> `./layer2/ObjectMolecule2.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectMolecule3.cpp' -> `./layer2/ObjectMolecule3.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectMolecule3.h' -> `./layer2/ObjectMolecule3.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectSlice.cpp' -> `./layer2/ObjectSlice.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectSlice.h' -> `./layer2/ObjectSlice.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectSurface.cpp' -> `./layer2/ObjectSurface.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectSurface.h' -> `./layer2/ObjectSurface.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectVolume.cpp' -> `./layer2/ObjectVolume.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/ObjectVolume.h' -> `./layer2/ObjectVolume.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepAngle.cpp' -> `./layer2/RepAngle.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepAngle.h' -> `./layer2/RepAngle.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepCartoon.cpp' -> `./layer2/RepCartoon.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepCartoon.h' -> `./layer2/RepCartoon.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepCylBond.cpp' -> `./layer2/RepCylBond.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepCylBond.h' -> `./layer2/RepCylBond.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepDihedral.cpp' -> `./layer2/RepDihedral.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepDihedral.h' -> `./layer2/RepDihedral.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepDistDash.cpp' -> `./layer2/RepDistDash.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepDistDash.h' -> `./layer2/RepDistDash.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepDistLabel.cpp' -> `./layer2/RepDistLabel.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepDistLabel.h' -> `./layer2/RepDistLabel.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepDot.cpp' -> `./layer2/RepDot.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepDot.h' -> `./layer2/RepDot.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepEllipsoid.cpp' -> `./layer2/RepEllipsoid.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepEllipsoid.h' -> `./layer2/RepEllipsoid.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepLabel.cpp' -> `./layer2/RepLabel.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepLabel.h' -> `./layer2/RepLabel.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepMesh.cpp' -> `./layer2/RepMesh.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepMesh.h' -> `./layer2/RepMesh.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepNonbonded.cpp' -> `./layer2/RepNonbonded.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepNonbonded.h' -> `./layer2/RepNonbonded.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepNonbondedSphere.cpp' -> `./layer2/RepNonbondedSphere.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepNonbondedSphere.h' -> `./layer2/RepNonbondedSphere.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepRibbon.cpp' -> `./layer2/RepRibbon.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepRibbon.h' -> `./layer2/RepRibbon.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepSphere.cpp' -> `./layer2/RepSphere.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepSphere.h' -> `./layer2/RepSphere.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepSphereGenerate.cpp' -> `./layer2/RepSphereGenerate.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepSphereGenerate.h' -> `./layer2/RepSphereGenerate.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepSphereImmediate.cpp' -> `./layer2/RepSphereImmediate.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepSphereImmediate.h' -> `./layer2/RepSphereImmediate.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepSurface.cpp' -> `./layer2/RepSurface.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepSurface.h' -> `./layer2/RepSurface.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepWireBond.cpp' -> `./layer2/RepWireBond.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/RepWireBond.h' -> `./layer2/RepWireBond.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/Sculpt.cpp' -> `./layer2/Sculpt.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/Sculpt.h' -> `./layer2/Sculpt.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/SculptCache.cpp' -> `./layer2/SculptCache.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/SculptCache.h' -> `./layer2/SculptCache.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/SideChainHelper.cpp' -> `./layer2/SideChainHelper.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/SideChainHelper.h' -> `./layer2/SideChainHelper.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/VFont.cpp' -> `./layer2/VFont.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer2/VFont.h' -> `./layer2/VFont.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Basis.cpp' -> `./layer1/Basis.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Basis.h' -> `./layer1/Basis.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/ButMode.cpp' -> `./layer1/ButMode.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/ButMode.h' -> `./layer1/ButMode.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/CGO.cpp' -> `./layer1/CGO.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/CGO.h' -> `./layer1/CGO.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/COLLADA.cpp' -> `./layer1/COLLADA.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Character.cpp' -> `./layer1/Character.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Character.h' -> `./layer1/Character.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Color.cpp' -> `./layer1/Color.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Color.h' -> `./layer1/Color.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Control.cpp' -> `./layer1/Control.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Control.h' -> `./layer1/Control.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Extrude.cpp' -> `./layer1/Extrude.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Extrude.h' -> `./layer1/Extrude.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Font.cpp' -> `./layer1/Font.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Font.h' -> `./layer1/Font.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/FontGLUT.cpp' -> `./layer1/FontGLUT.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/FontGLUT.h' -> `./layer1/FontGLUT.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/FontGLUT8x13.cpp' -> `./layer1/FontGLUT8x13.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/FontGLUT9x15.cpp' -> `./layer1/FontGLUT9x15.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/FontGLUTHel10.cpp' -> `./layer1/FontGLUTHel10.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/FontGLUTHel12.cpp' -> `./layer1/FontGLUTHel12.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/FontGLUTHel18.cpp' -> `./layer1/FontGLUTHel18.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/FontTTF.h' -> `./layer1/FontTTF.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/FontTTF2.h' -> `./layer1/FontTTF2.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/FontType.cpp' -> `./layer1/FontType.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/FontType.h' -> `./layer1/FontType.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Image.h' -> `./layer1/Image.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Movie.cpp' -> `./layer1/Movie.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Movie.h' -> `./layer1/Movie.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Ortho.cpp' -> `./layer1/Ortho.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Ortho.h' -> `./layer1/Ortho.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/P.cpp' -> `./layer1/P.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/P.h' -> `./layer1/P.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/PConv.cpp' -> `./layer1/PConv.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/PConv.h' -> `./layer1/PConv.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/PConvArgs.h' -> `./layer1/PConvArgs.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Picking.cpp' -> `./layer1/Picking.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Picking.h' -> `./layer1/Picking.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Pop.cpp' -> `./layer1/Pop.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Pop.h' -> `./layer1/Pop.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/PyMOLObject.cpp' -> `./layer1/PyMOLObject.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/PyMOLObject.h' -> `./layer1/PyMOLObject.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Ray.cpp' -> `./layer1/Ray.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Ray.h' -> `./layer1/Ray.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Rep.cpp' -> `./layer1/Rep.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Rep.h' -> `./layer1/Rep.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Scene.cpp' -> `./layer1/Scene.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Scene.h' -> `./layer1/Scene.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/SceneDef.h' -> `./layer1/SceneDef.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/SceneElem.h' -> `./layer1/SceneElem.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/SceneMouse.cpp' -> `./layer1/SceneMouse.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/SceneMouse.h' -> `./layer1/SceneMouse.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/ScenePicking.cpp' -> `./layer1/ScenePicking.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/ScenePicking.h' -> `./layer1/ScenePicking.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/SceneRay.cpp' -> `./layer1/SceneRay.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/SceneRay.h' -> `./layer1/SceneRay.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/SceneRender.cpp' -> `./layer1/SceneRender.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/SceneRender.h' -> `./layer1/SceneRender.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/SceneView.h' -> `./layer1/SceneView.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/ScrollBar.cpp' -> `./layer1/ScrollBar.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/ScrollBar.h' -> `./layer1/ScrollBar.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Seq.cpp' -> `./layer1/Seq.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Seq.h' -> `./layer1/Seq.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Setting.cpp' -> `./layer1/Setting.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Setting.h' -> `./layer1/Setting.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/SettingInfo.h' -> `./layer1/SettingInfo.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Shaker.cpp' -> `./layer1/Shaker.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Shaker.h' -> `./layer1/Shaker.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/SymOp.cpp' -> `./layer1/SymOp.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/SymOp.h' -> `./layer1/SymOp.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/SymOpPConv.cpp' -> `./layer1/SymOpPConv.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/SymOpPConv.h' -> `./layer1/SymOpPConv.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/SymOpTools.cpp' -> `./layer1/SymOpTools.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/SymOpTools.h' -> `./layer1/SymOpTools.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Symmetry.cpp' -> `./layer1/Symmetry.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Symmetry.h' -> `./layer1/Symmetry.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Text.cpp' -> `./layer1/Text.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Text.h' -> `./layer1/Text.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/TypeFace.cpp' -> `./layer1/TypeFace.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/TypeFace.h' -> `./layer1/TypeFace.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/View.cpp' -> `./layer1/View.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/View.h' -> `./layer1/View.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Wizard.cpp' -> `./layer1/Wizard.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer1/Wizard.h' -> `./layer1/Wizard.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Base.h' -> `./layer0/Base.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Block.cpp' -> `./layer0/Block.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Block.h' -> `./layer0/Block.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/CarveHelper.cpp' -> `./layer0/CarveHelper.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/CarveHelper.h' -> `./layer0/CarveHelper.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/ContourSurf.cpp' -> `./layer0/ContourSurf.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/ContourSurf.h' -> `./layer0/ContourSurf.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Crystal.cpp' -> `./layer0/Crystal.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Crystal.h' -> `./layer0/Crystal.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Deferred.cpp' -> `./layer0/Deferred.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Deferred.h' -> `./layer0/Deferred.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Err.cpp' -> `./layer0/Err.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Err.h' -> `./layer0/Err.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Feedback.cpp' -> `./layer0/Feedback.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Feedback.h' -> `./layer0/Feedback.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Field.cpp' -> `./layer0/Field.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Field.h' -> `./layer0/Field.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/File.cpp' -> `./layer0/File.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/File.h' -> `./layer0/File.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/FileStream.h' -> `./layer0/FileStream.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/GenericBuffer.cpp' -> `./layer0/GenericBuffer.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/GenericBuffer.h' -> `./layer0/GenericBuffer.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/GraphicsUtil.cpp' -> `./layer0/GraphicsUtil.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/GraphicsUtil.h' -> `./layer0/GraphicsUtil.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Isosurf.cpp' -> `./layer0/Isosurf.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Isosurf.h' -> `./layer0/Isosurf.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Lex.h' -> `./layer0/Lex.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/List.h' -> `./layer0/List.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/ListMacros.h' -> `./layer0/ListMacros.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Map.cpp' -> `./layer0/Map.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Map.h' -> `./layer0/Map.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Match.cpp' -> `./layer0/Match.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Match.h' -> `./layer0/Match.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Matrix.cpp' -> `./layer0/Matrix.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Matrix.h' -> `./layer0/Matrix.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/MemoryCache.h' -> `./layer0/MemoryCache.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/MemoryDebug.cpp' -> `./layer0/MemoryDebug.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/MemoryDebug.h' -> `./layer0/MemoryDebug.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/MemoryUsage.cpp' -> `./layer0/MemoryUsage.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/MemoryUsage.h' -> `./layer0/MemoryUsage.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/MyPNG.cpp' -> `./layer0/MyPNG.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/MyPNG.h' -> `./layer0/MyPNG.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/OOMac.h' -> `./layer0/OOMac.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Parse.cpp' -> `./layer0/Parse.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Parse.h' -> `./layer0/Parse.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Pixmap.cpp' -> `./layer0/Pixmap.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Pixmap.h' -> `./layer0/Pixmap.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/PostProcess.cpp' -> `./layer0/PostProcess.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/PostProcess.h' -> `./layer0/PostProcess.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/PyMOLEnums.h' -> `./layer0/PyMOLEnums.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/PyMOLGlobals.h' -> `./layer0/PyMOLGlobals.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/PyMOLOptions.h' -> `./layer0/PyMOLOptions.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Rect.h' -> `./layer0/Rect.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/RenderContext.h' -> `./layer0/RenderContext.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/RenderPass.h' -> `./layer0/RenderPass.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Result.h' -> `./layer0/Result.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/ShaderMgr.cpp' -> `./layer0/ShaderMgr.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/ShaderMgr.h' -> `./layer0/ShaderMgr.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/ShaderPrg.cpp' -> `./layer0/ShaderPrg.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Sphere.cpp' -> `./layer0/Sphere.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Sphere.h' -> `./layer0/Sphere.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/SphereData.h' -> `./layer0/SphereData.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Tetsurf.cpp' -> `./layer0/Tetsurf.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Tetsurf.h' -> `./layer0/Tetsurf.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Texture.cpp' -> `./layer0/Texture.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Texture.h' -> `./layer0/Texture.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Tracker.cpp' -> `./layer0/Tracker.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Tracker.h' -> `./layer0/Tracker.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/TrackerList.h' -> `./layer0/TrackerList.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Triangle.cpp' -> `./layer0/Triangle.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Triangle.h' -> `./layer0/Triangle.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Util.cpp' -> `./layer0/Util.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Util.h' -> `./layer0/Util.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Util2.cpp' -> `./layer0/Util2.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Util2.h' -> `./layer0/Util2.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Vector.cpp' -> `./layer0/Vector.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Vector.h' -> `./layer0/Vector.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Version.h' -> `./layer0/Version.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Word.cpp' -> `./layer0/Word.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/Word.h' -> `./layer0/Word.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/ccealignmodule.cpp' -> `./layer0/ccealignmodule.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/ce_types.h' -> `./layer0/ce_types.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/gl_def.h' -> `./layer0/gl_def.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/lex_constants.h' -> `./layer0/lex_constants.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/marching_cubes.cpp' -> `./layer0/marching_cubes.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/marching_cubes.h' -> `./layer0/marching_cubes.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/os_gl.cpp' -> `./layer0/os_gl.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/os_gl.h' -> `./layer0/os_gl.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/os_gl_cgo.h' -> `./layer0/os_gl_cgo.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/os_gl_glut.h' -> `./layer0/os_gl_glut.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/os_gl_glut_pretend.h' -> `./layer0/os_gl_glut_pretend.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/os_gl_glut_real.h' -> `./layer0/os_gl_glut_real.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/os_limits.h' -> `./layer0/os_limits.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/os_numpy.h' -> `./layer0/os_numpy.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/os_predef.h' -> `./layer0/os_predef.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/os_proprietary.h' -> `./layer0/os_proprietary.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/os_python.h' -> `./layer0/os_python.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/os_std.h' -> `./layer0/os_std.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/os_time.h' -> `./layer0/os_time.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/os_types.h' -> `./layer0/os_types.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/os_unix.h' -> `./layer0/os_unix.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/strcasecmp.h' -> `./layer0/strcasecmp.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/layer0/vla.h' -> `./layer0/vla.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/jama_cholesky.h' -> `./include/tnt/jama_cholesky.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/jama_eig.h' -> `./include/tnt/jama_eig.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/jama_lu.h' -> `./include/tnt/jama_lu.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/jama_qr.h' -> `./include/tnt/jama_qr.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/jama_svd.h' -> `./include/tnt/jama_svd.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/tnt.h' -> `./include/tnt/tnt.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/tnt_array1d.h' -> `./include/tnt/tnt_array1d.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/tnt_array1d_utils.h' -> `./include/tnt/tnt_array1d_utils.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/tnt_array2d.h' -> `./include/tnt/tnt_array2d.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/tnt_array2d_utils.h' -> `./include/tnt/tnt_array2d_utils.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/tnt_array3d.h' -> `./include/tnt/tnt_array3d.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/tnt_array3d_utils.h' -> `./include/tnt/tnt_array3d_utils.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/tnt_fortran_array1d.h' -> `./include/tnt/tnt_fortran_array1d.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/tnt_fortran_array1d_utils.h' -> `./include/tnt/tnt_fortran_array1d_utils.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/tnt_fortran_array2d.h' -> `./include/tnt/tnt_fortran_array2d.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/tnt_fortran_array2d_utils.h' -> `./include/tnt/tnt_fortran_array2d_utils.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/tnt_fortran_array3d.h' -> `./include/tnt/tnt_fortran_array3d.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/tnt_fortran_array3d_utils.h' -> `./include/tnt/tnt_fortran_array3d_utils.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/tnt_i_refvec.h' -> `./include/tnt/tnt_i_refvec.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/tnt_lapack.h' -> `./include/tnt/tnt_lapack.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/tnt_linalg.h' -> `./include/tnt/tnt_linalg.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/tnt_math_utils.h' -> `./include/tnt/tnt_math_utils.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/tnt_matrix.h' -> `./include/tnt/tnt_matrix.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/tnt_sparse_matrix.h' -> `./include/tnt/tnt_sparse_matrix.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/tnt_sparse_vector.h' -> `./include/tnt/tnt_sparse_vector.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/tnt_stopwatch.h' -> `./include/tnt/tnt_stopwatch.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/tnt_subscript.h' -> `./include/tnt/tnt_subscript.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/tnt_vector.h' -> `./include/tnt/tnt_vector.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/tnt/tnt_version.h' -> `./include/tnt/tnt_version.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/pymol/algorithm.h' -> `./include/pymol/algorithm.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/pymol/math_defines.h' -> `./include/pymol/math_defines.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/pymol/memory.h' -> `./include/pymol/memory.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/pymol/type_traits.h' -> `./include/pymol/type_traits.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/include/pymol/zstring_view.h' -> `./include/pymol/zstring_view.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/launching/README' -> `./examples/launching/README'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/launching/launch_demo.py' -> `./examples/launching/launch_demo.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/launching/launch_viewer1.py' -> `./examples/launching/launch_viewer1.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/launching/launch_viewer2.py' -> `./examples/launching/launch_viewer2.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/brick01.py' -> `./examples/devel/brick01.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/cam2crd.pym' -> `./examples/devel/cam2crd.pym'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/cgo01.py' -> `./examples/devel/cgo01.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/cgo02.py' -> `./examples/devel/cgo02.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/cgo03.py' -> `./examples/devel/cgo03.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/cgo04.py' -> `./examples/devel/cgo04.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/cgo05.py' -> `./examples/devel/cgo05.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/cgo06.py' -> `./examples/devel/cgo06.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/cgo07.py' -> `./examples/devel/cgo07.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/cgo08.py' -> `./examples/devel/cgo08.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/cgo_3Dtext01.py' -> `./examples/devel/cgo_3Dtext01.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/cgo_axes.py' -> `./examples/devel/cgo_axes.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/cgo_label_hack.py' -> `./examples/devel/cgo_label_hack.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/cgo_plane.py' -> `./examples/devel/cgo_plane.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/chempy_model01.py' -> `./examples/devel/chempy_model01.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/chempy_model02.py' -> `./examples/devel/chempy_model02.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/chempy_model03.py' -> `./examples/devel/chempy_model03.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/click_ordered_list.py' -> `./examples/devel/click_ordered_list.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/count_molecules.py' -> `./examples/devel/count_molecules.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/demo.sdf' -> `./examples/devel/demo.sdf'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/extend_demo01.py' -> `./examples/devel/extend_demo01.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/gl01.py' -> `./examples/devel/gl01.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/gl02.py' -> `./examples/devel/gl02.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/gl03.py' -> `./examples/devel/gl03.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/hole_vmd_tri.pym' -> `./examples/devel/hole_vmd_tri.pym'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/importing.py' -> `./examples/devel/importing.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/link_demo.py' -> `./examples/devel/link_demo.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/membrane.py' -> `./examples/devel/membrane.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/mutate01.pml' -> `./examples/devel/mutate01.pml'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/mutate02.py' -> `./examples/devel/mutate02.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/my_ext_gui.py' -> `./examples/devel/my_ext_gui.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/particle01.py' -> `./examples/devel/particle01.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/particle02.py' -> `./examples/devel/particle02.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/pick_wiz.py' -> `./examples/devel/pick_wiz.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/povray01.py' -> `./examples/devel/povray01.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/scenes_to_movie01.pml' -> `./examples/devel/scenes_to_movie01.pml'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/sd_annotate.pml' -> `./examples/devel/sd_annotate.pml'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/sele_wiz.py' -> `./examples/devel/sele_wiz.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/start_pymol.py' -> `./examples/devel/start_pymol.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/syncmol.py' -> `./examples/devel/syncmol.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/tkwindow.py' -> `./examples/devel/tkwindow.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/webgui01.py' -> `./examples/devel/webgui01.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/webgui02.py' -> `./examples/devel/webgui02.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/xmlrpc01.py' -> `./examples/devel/xmlrpc01.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/devel/xmlrpc02.py' -> `./examples/devel/xmlrpc02.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/cookbook/area_diff.pml' -> `./examples/cookbook/area_diff.pml'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/cookbook/build_peptide.py' -> `./examples/cookbook/build_peptide.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/cookbook/contact.pml' -> `./examples/cookbook/contact.pml'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/cookbook/dali.py' -> `./examples/cookbook/dali.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/cookbook/density.pml' -> `./examples/cookbook/density.pml'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/cookbook/groel_es.pml' -> `./examples/cookbook/groel_es.pml'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/cookbook/multiclip_ray.pml' -> `./examples/cookbook/multiclip_ray.pml'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/cookbook/packing.pml' -> `./examples/cookbook/packing.pml'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/cookbook/packsurf.pml' -> `./examples/cookbook/packsurf.pml'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/cookbook/ref_frame.pml' -> `./examples/cookbook/ref_frame.pml'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/cookbook/ribosome.pml' -> `./examples/cookbook/ribosome.pml'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/cookbook/scenes2movie.pml' -> `./examples/cookbook/scenes2movie.pml'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/cookbook/seq_match_sele.pml' -> `./examples/cookbook/seq_match_sele.pml'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/cookbook/ss_xfer.pml' -> `./examples/cookbook/ss_xfer.pml'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/cookbook/symsph.py' -> `./examples/cookbook/symsph.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/chempy/generate_amber.py' -> `./examples/chempy/generate_amber.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/examples/chempy/generate_mmff.py' -> `./examples/chempy/generate_mmff.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chem_comp_bond-top100.cif' -> `./data/chem_comp_bond-top100.cif'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/tut/1hpv.pdb' -> `./data/tut/1hpv.pdb'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/test/double.png' -> `./data/test/double.png'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/test/single-right.png' -> `./data/test/single-right.png'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/test/single.png' -> `./data/test/single.png'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/startup/README.txt' -> `./data/startup/README.txt'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/startup/lightingsettings_gui/__init__.py' -> `./data/startup/lightingsettings_gui/__init__.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/startup/lightingsettings_gui/main.py' -> `./data/startup/lightingsettings_gui/main.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/anaglyph_header.fs' -> `./data/shaders/anaglyph_header.fs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/bg.fs' -> `./data/shaders/bg.fs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/bg.vs' -> `./data/shaders/bg.vs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/call_compute_color_for_light.fs' -> `./data/shaders/call_compute_color_for_light.fs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/compute_color_for_light.fs' -> `./data/shaders/compute_color_for_light.fs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/compute_fog_color.fs' -> `./data/shaders/compute_fog_color.fs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/connector.fs' -> `./data/shaders/connector.fs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/connector.gs' -> `./data/shaders/connector.gs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/connector.shared' -> `./data/shaders/connector.shared'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/connector.vs' -> `./data/shaders/connector.vs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/copy.fs' -> `./data/shaders/copy.fs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/copy.vs' -> `./data/shaders/copy.vs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/cylinder.fs' -> `./data/shaders/cylinder.fs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/cylinder.vs' -> `./data/shaders/cylinder.vs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/default.fs' -> `./data/shaders/default.fs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/default.vs' -> `./data/shaders/default.vs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/indicator.fs' -> `./data/shaders/indicator.fs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/indicator.vs' -> `./data/shaders/indicator.vs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/label.fs' -> `./data/shaders/label.fs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/label.vs' -> `./data/shaders/label.vs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/line.fs' -> `./data/shaders/line.fs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/line.vs' -> `./data/shaders/line.vs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/oit.fs' -> `./data/shaders/oit.fs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/oit.vs' -> `./data/shaders/oit.vs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/ramp.fs' -> `./data/shaders/ramp.fs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/ramp.vs' -> `./data/shaders/ramp.vs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/screen.fs' -> `./data/shaders/screen.fs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/screen.vs' -> `./data/shaders/screen.vs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/sphere.fs' -> `./data/shaders/sphere.fs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/sphere.vs' -> `./data/shaders/sphere.vs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/surface.fs' -> `./data/shaders/surface.fs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/surface.vs' -> `./data/shaders/surface.vs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/trilines.fs' -> `./data/shaders/trilines.fs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/trilines.vs' -> `./data/shaders/trilines.vs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/volume.fs' -> `./data/shaders/volume.fs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/volume.vs' -> `./data/shaders/volume.vs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/vrcontroller.fs' -> `./data/shaders/vrcontroller.fs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/vrcontroller.vs' -> `./data/shaders/vrcontroller.vs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/webgl_header.fs' -> `./data/shaders/webgl_header.fs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/shaders/webgl_header.vs' -> `./data/shaders/webgl_header.vs'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/pymol/cmyk.png' -> `./data/pymol/cmyk.png'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/pymol/hsv.ppm' -> `./data/pymol/hsv.ppm'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/pymol/splash.png' -> `./data/pymol/splash.png'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/pymol/matrices/BLOSUM62' -> `./data/pymol/matrices/BLOSUM62'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/pymol/icons/icon2.svg' -> `./data/pymol/icons/icon2.svg'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/pmg_tk/bitmaps/builder/aro5.gif' -> `./data/pmg_tk/bitmaps/builder/aro5.gif'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/pmg_tk/bitmaps/builder/aro5.xbm' -> `./data/pmg_tk/bitmaps/builder/aro5.xbm'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/pmg_tk/bitmaps/builder/aro6.gif' -> `./data/pmg_tk/bitmaps/builder/aro6.gif'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/pmg_tk/bitmaps/builder/aro6.xbm' -> `./data/pmg_tk/bitmaps/builder/aro6.xbm'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/pmg_tk/bitmaps/builder/aro65.gif' -> `./data/pmg_tk/bitmaps/builder/aro65.gif'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/pmg_tk/bitmaps/builder/aro65.xbm' -> `./data/pmg_tk/bitmaps/builder/aro65.xbm'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/pmg_tk/bitmaps/builder/aro66.gif' -> `./data/pmg_tk/bitmaps/builder/aro66.gif'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/pmg_tk/bitmaps/builder/aro66.xbm' -> `./data/pmg_tk/bitmaps/builder/aro66.xbm'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/pmg_tk/bitmaps/builder/aro67.gif' -> `./data/pmg_tk/bitmaps/builder/aro67.gif'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/pmg_tk/bitmaps/builder/aro67.xbm' -> `./data/pmg_tk/bitmaps/builder/aro67.xbm'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/pmg_tk/bitmaps/builder/cyc3.gif' -> `./data/pmg_tk/bitmaps/builder/cyc3.gif'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/pmg_tk/bitmaps/builder/cyc3.xbm' -> `./data/pmg_tk/bitmaps/builder/cyc3.xbm'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/pmg_tk/bitmaps/builder/cyc4.gif' -> `./data/pmg_tk/bitmaps/builder/cyc4.gif'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/pmg_tk/bitmaps/builder/cyc4.xbm' -> `./data/pmg_tk/bitmaps/builder/cyc4.xbm'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/pmg_tk/bitmaps/builder/cyc5.gif' -> `./data/pmg_tk/bitmaps/builder/cyc5.gif'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/pmg_tk/bitmaps/builder/cyc5.xbm' -> `./data/pmg_tk/bitmaps/builder/cyc5.xbm'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/pmg_tk/bitmaps/builder/cyc6.gif' -> `./data/pmg_tk/bitmaps/builder/cyc6.gif'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/pmg_tk/bitmaps/builder/cyc6.xbm' -> `./data/pmg_tk/bitmaps/builder/cyc6.xbm'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/pmg_tk/bitmaps/builder/cyc7.gif' -> `./data/pmg_tk/bitmaps/builder/cyc7.gif'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/pmg_tk/bitmaps/builder/cyc7.xbm' -> `./data/pmg_tk/bitmaps/builder/cyc7.xbm'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/pmg_qt/styles/pymol.sty' -> `./data/pmg_qt/styles/pymol.sty'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/pmg_qt/icons/refresh.svg' -> `./data/pmg_qt/icons/refresh.svg'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/openvr/actions.json' -> `./data/openvr/actions.json'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/openvr/bindings_vive_controller.json' -> `./data/openvr/bindings_vive_controller.json'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/openvr/hints_vive_controller.png' -> `./data/openvr/hints_vive_controller.png'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/openvr/hints_vive_controller.svg' -> `./data/openvr/hints_vive_controller.svg'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/openvr/menu_splash.png' -> `./data/openvr/menu_splash.png'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/openvr/menu_splash.svg' -> `./data/openvr/menu_splash.svg'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/demo/1hpv.r3d' -> `./data/demo/1hpv.r3d'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/demo/1tii.pdb' -> `./data/demo/1tii.pdb'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/demo/cgo03.py' -> `./data/demo/cgo03.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/demo/il2.pdb' -> `./data/demo/il2.pdb'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/demo/pept.pdb' -> `./data/demo/pept.pdb'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/demo/pept.pkl' -> `./data/demo/pept.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/water.pdb' -> `./data/chempy/water.pdb'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/tinker/Makefile.delsci' -> `./data/chempy/tinker/Makefile.delsci'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/tinker/chempy.prm' -> `./data/chempy/tinker/chempy.prm'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/tinker/make99_simple.py' -> `./data/chempy/tinker/make99_simple.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/tinker/make_simple.py' -> `./data/chempy/tinker/make_simple.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/tinker/parm94.dat' -> `./data/chempy/tinker/parm94.dat'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/tinker/parm94_rsm.dat' -> `./data/chempy/tinker/parm94_rsm.dat'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/tinker/parm96.dat' -> `./data/chempy/tinker/parm96.dat'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/tinker/parm96_rsm.dat' -> `./data/chempy/tinker/parm96_rsm.dat'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/tinker/parm99.dat' -> `./data/chempy/tinker/parm99.dat'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/tinker/parm99_simple.dat' -> `./data/chempy/tinker/parm99_simple.dat'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/tinker/parm99_wld.dat' -> `./data/chempy/tinker/parm99_wld.dat'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/tinker/parm_simple.dat' -> `./data/chempy/tinker/parm_simple.dat'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/tinker/parm_simple.inp' -> `./data/chempy/tinker/parm_simple.inp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/sidechains/generate1.py' -> `./data/chempy/sidechains/generate1.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/sidechains/generate2.py' -> `./data/chempy/sidechains/generate2.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/sidechains/sc_bb_dep.pkl' -> `./data/chempy/sidechains/sc_bb_dep.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/sidechains/sc_bb_dep.py' -> `./data/chempy/sidechains/sc_bb_dep.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/sidechains/sc_bb_ind.pkl' -> `./data/chempy/sidechains/sc_bb_ind.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/sidechains/sc_bb_ind.py' -> `./data/chempy/sidechains/sc_bb_ind.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/sidechains/sc_library.pkl' -> `./data/chempy/sidechains/sc_library.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ace.pkl' -> `./data/chempy/fragments/ace.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/acetylene.pkl' -> `./data/chempy/fragments/acetylene.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ala.pkl' -> `./data/chempy/fragments/ala.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/arg.pkl' -> `./data/chempy/fragments/arg.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/argn.pkl' -> `./data/chempy/fragments/argn.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/asn.pkl' -> `./data/chempy/fragments/asn.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/asp.pkl' -> `./data/chempy/fragments/asp.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/asph.pkl' -> `./data/chempy/fragments/asph.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/atp.pkl' -> `./data/chempy/fragments/atp.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/benzene.pkl' -> `./data/chempy/fragments/benzene.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/benzocycloheptane.pkl' -> `./data/chempy/fragments/benzocycloheptane.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/butane.pkl' -> `./data/chempy/fragments/butane.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ct_ala.pkl' -> `./data/chempy/fragments/ct_ala.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ct_arg.pkl' -> `./data/chempy/fragments/ct_arg.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ct_argn.pkl' -> `./data/chempy/fragments/ct_argn.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ct_asn.pkl' -> `./data/chempy/fragments/ct_asn.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ct_asp.pkl' -> `./data/chempy/fragments/ct_asp.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ct_asph.pkl' -> `./data/chempy/fragments/ct_asph.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ct_cys.pkl' -> `./data/chempy/fragments/ct_cys.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ct_gln.pkl' -> `./data/chempy/fragments/ct_gln.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ct_glu.pkl' -> `./data/chempy/fragments/ct_glu.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ct_gluh.pkl' -> `./data/chempy/fragments/ct_gluh.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ct_gly.pkl' -> `./data/chempy/fragments/ct_gly.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ct_hid.pkl' -> `./data/chempy/fragments/ct_hid.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ct_hie.pkl' -> `./data/chempy/fragments/ct_hie.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ct_hip.pkl' -> `./data/chempy/fragments/ct_hip.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ct_his.pkl' -> `./data/chempy/fragments/ct_his.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ct_ile.pkl' -> `./data/chempy/fragments/ct_ile.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ct_leu.pkl' -> `./data/chempy/fragments/ct_leu.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ct_lys.pkl' -> `./data/chempy/fragments/ct_lys.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ct_lysn.pkl' -> `./data/chempy/fragments/ct_lysn.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ct_met.pkl' -> `./data/chempy/fragments/ct_met.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ct_phe.pkl' -> `./data/chempy/fragments/ct_phe.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ct_pro.pkl' -> `./data/chempy/fragments/ct_pro.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ct_ser.pkl' -> `./data/chempy/fragments/ct_ser.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ct_thr.pkl' -> `./data/chempy/fragments/ct_thr.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ct_trp.pkl' -> `./data/chempy/fragments/ct_trp.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ct_tyr.pkl' -> `./data/chempy/fragments/ct_tyr.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ct_val.pkl' -> `./data/chempy/fragments/ct_val.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ctp.pkl' -> `./data/chempy/fragments/ctp.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/cyanide.pkl' -> `./data/chempy/fragments/cyanide.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/cyclobutane.pkl' -> `./data/chempy/fragments/cyclobutane.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/cycloheptane.pkl' -> `./data/chempy/fragments/cycloheptane.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/cyclohexane.pkl' -> `./data/chempy/fragments/cyclohexane.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/cyclopentadiene.pkl' -> `./data/chempy/fragments/cyclopentadiene.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/cyclopentane.pkl' -> `./data/chempy/fragments/cyclopentane.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/cyclopropane.pkl' -> `./data/chempy/fragments/cyclopropane.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/cys.pkl' -> `./data/chempy/fragments/cys.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ethylene.pkl' -> `./data/chempy/fragments/ethylene.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/formaldehyde.pkl' -> `./data/chempy/fragments/formaldehyde.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/formamide.pkl' -> `./data/chempy/fragments/formamide.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/formic.pkl' -> `./data/chempy/fragments/formic.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/gln.pkl' -> `./data/chempy/fragments/gln.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/glu.pkl' -> `./data/chempy/fragments/glu.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/gluh.pkl' -> `./data/chempy/fragments/gluh.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/gly.pkl' -> `./data/chempy/fragments/gly.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/gtp.pkl' -> `./data/chempy/fragments/gtp.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/hid.pkl' -> `./data/chempy/fragments/hid.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/hie.pkl' -> `./data/chempy/fragments/hie.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/hip.pkl' -> `./data/chempy/fragments/hip.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/his.pkl' -> `./data/chempy/fragments/his.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ile.pkl' -> `./data/chempy/fragments/ile.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/indane.pkl' -> `./data/chempy/fragments/indane.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/leu.pkl' -> `./data/chempy/fragments/leu.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/lys.pkl' -> `./data/chempy/fragments/lys.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/lysn.pkl' -> `./data/chempy/fragments/lysn.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/met.pkl' -> `./data/chempy/fragments/met.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/methane.pkl' -> `./data/chempy/fragments/methane.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/methanol.pkl' -> `./data/chempy/fragments/methanol.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/napthylene.pkl' -> `./data/chempy/fragments/napthylene.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nhh.pkl' -> `./data/chempy/fragments/nhh.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nitro.pkl' -> `./data/chempy/fragments/nitro.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nme.pkl' -> `./data/chempy/fragments/nme.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nt_ala.pkl' -> `./data/chempy/fragments/nt_ala.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nt_arg.pkl' -> `./data/chempy/fragments/nt_arg.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nt_argn.pkl' -> `./data/chempy/fragments/nt_argn.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nt_asn.pkl' -> `./data/chempy/fragments/nt_asn.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nt_asp.pkl' -> `./data/chempy/fragments/nt_asp.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nt_asph.pkl' -> `./data/chempy/fragments/nt_asph.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nt_cys.pkl' -> `./data/chempy/fragments/nt_cys.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nt_gln.pkl' -> `./data/chempy/fragments/nt_gln.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nt_glu.pkl' -> `./data/chempy/fragments/nt_glu.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nt_gluh.pkl' -> `./data/chempy/fragments/nt_gluh.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nt_gly.pkl' -> `./data/chempy/fragments/nt_gly.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nt_hid.pkl' -> `./data/chempy/fragments/nt_hid.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nt_hie.pkl' -> `./data/chempy/fragments/nt_hie.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nt_hip.pkl' -> `./data/chempy/fragments/nt_hip.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nt_his.pkl' -> `./data/chempy/fragments/nt_his.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nt_ile.pkl' -> `./data/chempy/fragments/nt_ile.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nt_leu.pkl' -> `./data/chempy/fragments/nt_leu.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nt_lys.pkl' -> `./data/chempy/fragments/nt_lys.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nt_lysn.pkl' -> `./data/chempy/fragments/nt_lysn.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nt_met.pkl' -> `./data/chempy/fragments/nt_met.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nt_phe.pkl' -> `./data/chempy/fragments/nt_phe.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nt_pro.pkl' -> `./data/chempy/fragments/nt_pro.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nt_ser.pkl' -> `./data/chempy/fragments/nt_ser.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nt_thr.pkl' -> `./data/chempy/fragments/nt_thr.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nt_trp.pkl' -> `./data/chempy/fragments/nt_trp.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nt_tyr.pkl' -> `./data/chempy/fragments/nt_tyr.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/nt_val.pkl' -> `./data/chempy/fragments/nt_val.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/peptide.pkl' -> `./data/chempy/fragments/peptide.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/phe.pkl' -> `./data/chempy/fragments/phe.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/phosphite.pkl' -> `./data/chempy/fragments/phosphite.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/pro.pkl' -> `./data/chempy/fragments/pro.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/realtime.pkl' -> `./data/chempy/fragments/realtime.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ser.pkl' -> `./data/chempy/fragments/ser.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/sulfone.pkl' -> `./data/chempy/fragments/sulfone.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/thr.pkl' -> `./data/chempy/fragments/thr.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/trifluoromethane.pkl' -> `./data/chempy/fragments/trifluoromethane.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/trp.pkl' -> `./data/chempy/fragments/trp.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/ttp.pkl' -> `./data/chempy/fragments/ttp.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/tyr.pkl' -> `./data/chempy/fragments/tyr.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/utp.pkl' -> `./data/chempy/fragments/utp.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/data/chempy/fragments/val.pkl' -> `./data/chempy/fragments/val.pkl'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/README' -> `./contrib/README'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/vr/LICENSE' -> `./contrib/vr/LICENSE'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/vr/OpenVRAction.h' -> `./contrib/vr/OpenVRAction.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/vr/OpenVRActionList.h' -> `./contrib/vr/OpenVRActionList.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/vr/OpenVRController.cpp' -> `./contrib/vr/OpenVRController.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/vr/OpenVRController.h' -> `./contrib/vr/OpenVRController.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/vr/OpenVRControllerModel.cpp' -> `./contrib/vr/OpenVRControllerModel.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/vr/OpenVRControllerModel.h' -> `./contrib/vr/OpenVRControllerModel.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/vr/OpenVRLaser.cpp' -> `./contrib/vr/OpenVRLaser.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/vr/OpenVRLaser.h' -> `./contrib/vr/OpenVRLaser.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/vr/OpenVRLaserSource.h' -> `./contrib/vr/OpenVRLaserSource.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/vr/OpenVRLaserTarget.h' -> `./contrib/vr/OpenVRLaserTarget.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/vr/OpenVRMenu.cpp' -> `./contrib/vr/OpenVRMenu.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/vr/OpenVRMenu.h' -> `./contrib/vr/OpenVRMenu.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/vr/OpenVRMode.cpp' -> `./contrib/vr/OpenVRMode.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/vr/OpenVRMode.h' -> `./contrib/vr/OpenVRMode.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/vr/OpenVRQuad.cpp' -> `./contrib/vr/OpenVRQuad.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/vr/OpenVRQuad.h' -> `./contrib/vr/OpenVRQuad.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/vr/OpenVRScenePicker.cpp' -> `./contrib/vr/OpenVRScenePicker.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/vr/OpenVRScenePicker.h' -> `./contrib/vr/OpenVRScenePicker.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/vr/OpenVRStub.cpp' -> `./contrib/vr/OpenVRStub.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/vr/OpenVRStub.h' -> `./contrib/vr/OpenVRStub.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/vr/OpenVRStubDevice.cpp' -> `./contrib/vr/OpenVRStubDevice.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/vr/OpenVRStubDevice.h' -> `./contrib/vr/OpenVRStubDevice.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/vr/OpenVRUtils.cpp' -> `./contrib/vr/OpenVRUtils.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/vr/OpenVRUtils.h' -> `./contrib/vr/OpenVRUtils.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/vr/README.md' -> `./contrib/vr/README.md'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/README' -> `./contrib/uiuc/README'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/LICENSE' -> `./contrib/uiuc/plugins/LICENSE'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/LICENSE' -> `./contrib/uiuc/plugins/molfile_plugin/LICENSE'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/post.patch' -> `./contrib/uiuc/plugins/molfile_plugin/post.patch'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/update.py' -> `./contrib/uiuc/plugins/molfile_plugin/update.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h' -> `./contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h' -> `./contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h' -> `./contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/carplugin.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/corplugin.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/corplugin.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx' -> `./contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/endianswap.h' -> `./contrib/uiuc/plugins/molfile_plugin/src/endianswap.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/fastio.h' -> `./contrib/uiuc/plugins/molfile_plugin/src/fastio.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/fortread.h' -> `./contrib/uiuc/plugins/molfile_plugin/src/fortread.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/gaussianplugin.h' -> `./contrib/uiuc/plugins/molfile_plugin/src/gaussianplugin.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/hash.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/hash.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/hash.h' -> `./contrib/uiuc/plugins/molfile_plugin/src/hash.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/inthash.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/inthash.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/inthash.h' -> `./contrib/uiuc/plugins/molfile_plugin/src/inthash.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/largefiles.h' -> `./contrib/uiuc/plugins/molfile_plugin/src/largefiles.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h' -> `./contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/ply.h' -> `./contrib/uiuc/plugins/molfile_plugin/src/ply.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/ply_c.h' -> `./contrib/uiuc/plugins/molfile_plugin/src/ply_c.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h' -> `./contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/readpdb.h' -> `./contrib/uiuc/plugins/molfile_plugin/src/readpdb.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/unit_conversion.h' -> `./contrib/uiuc/plugins/molfile_plugin/src/unit_conversion.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h' -> `./contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/vmddir.h' -> `./contrib/uiuc/plugins/molfile_plugin/src/vmddir.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp' -> `./contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c' -> `./contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/include/import_graphics_plugin.h' -> `./contrib/uiuc/plugins/include/import_graphics_plugin.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/include/molfile_plugin.h' -> `./contrib/uiuc/plugins/include/molfile_plugin.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/include/vmdconio.h' -> `./contrib/uiuc/plugins/include/vmdconio.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/uiuc/plugins/include/vmdplugin.h' -> `./contrib/uiuc/plugins/include/vmdplugin.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/mmtf-c/mmtf_parser.cpp' -> `./contrib/mmtf-c/mmtf_parser.cpp'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/mmtf-c/mmtf_parser.h' -> `./contrib/mmtf-c/mmtf_parser.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/LICENSE' -> `./contrib/champ/LICENSE'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/README' -> `./contrib/champ/README'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/champ.c' -> `./contrib/champ/champ.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/champ.h' -> `./contrib/champ/champ.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/champ_module.c' -> `./contrib/champ/champ_module.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/chiral.c' -> `./contrib/champ/chiral.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/chiral.h' -> `./contrib/champ/chiral.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/const.h' -> `./contrib/champ/const.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/err2.c' -> `./contrib/champ/err2.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/err2.h' -> `./contrib/champ/err2.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/feedback2.c' -> `./contrib/champ/feedback2.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/feedback2.h' -> `./contrib/champ/feedback2.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/list.c' -> `./contrib/champ/list.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/list.h' -> `./contrib/champ/list.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/mac.h' -> `./contrib/champ/mac.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/os_memory.c' -> `./contrib/champ/os_memory.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/os_memory.h' -> `./contrib/champ/os_memory.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/os_python.h' -> `./contrib/champ/os_python.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/os_std.h' -> `./contrib/champ/os_std.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/sort.c' -> `./contrib/champ/sort.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/sort.h' -> `./contrib/champ/sort.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/strblock.c' -> `./contrib/champ/strblock.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/strblock.h' -> `./contrib/champ/strblock.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/vla.c' -> `./contrib/champ/vla.c'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/vla.h' -> `./contrib/champ/vla.h'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/test/01basic.py' -> `./contrib/champ/test/01basic.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/test/10stereo.py' -> `./contrib/champ/test/10stereo.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/test/11stereo.py' -> `./contrib/champ/test/11stereo.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/test/20export_naming.py' -> `./contrib/champ/test/20export_naming.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/test/21export_formal_charges.py' -> `./contrib/champ/test/21export_formal_charges.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/test/22export_partial_charges.py' -> `./contrib/champ/test/22export_partial_charges.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/contrib/champ/test/50nci.py' -> `./contrib/champ/test/50nci.py'
`/gnu/store/zdm8xk5f4if5wnnn8rxgb58sllrr694c-python-pymol-2.5.0-checkout/.github/workflows/build.yml' -> `./.github/workflows/build.yml'
phase `unpack' succeeded after 1.6 seconds
starting phase `add-include-directories'
phase `add-include-directories' succeeded after 0.0 seconds
starting phase `make-reproducible'
phase `make-reproducible' succeeded after 0.0 seconds
starting phase `ensure-no-mtimes-pre-1980'
phase `ensure-no-mtimes-pre-1980' succeeded after 0.0 seconds
starting phase `enable-bytecode-determinism'
phase `enable-bytecode-determinism' succeeded after 0.0 seconds
starting phase `ensure-no-cythonized-files'
phase `ensure-no-cythonized-files' succeeded after 0.0 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
patch-shebang: ./setup.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
phase `patch-source-shebangs' succeeded after 0.3 seconds
starting phase `patch-generated-file-shebangs'
phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `build'
running "python setup.py" with command "build" and parameters ()
numpy not available
running build
running build_py
creating build/lib.linux-x86_64-cpython-39
creating build/lib.linux-x86_64-cpython-39/pymol2
copying modules/pymol2/__init__.py -> build/lib.linux-x86_64-cpython-39/pymol2
copying modules/pymol2/cmd2.py -> build/lib.linux-x86_64-cpython-39/pymol2
creating build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/__init__.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/__main__.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/_gui.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/api.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/callback.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/cgo.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/checking.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/cmd.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/colorprinting.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/colorramping.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/commanding.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/completing.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/computing.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/constants.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/constants_palette.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/controlling.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/creating.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/diagnosing.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/editing.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/editor.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/experimenting.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/exporting.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/externing.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/feedingback.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/fitting.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/gui.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/headering.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/helping.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/importing.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/internal.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/invocation.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/keyboard.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/keywords.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/lazyio.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/locking.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/menu.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/monitoring.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/morphing.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/movie.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/moving.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/mpeg_encode.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/parser.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/parsing.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/povray.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/preset.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/pymolhttpd.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/querying.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/rpc.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/save_shortcut.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/selecting.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/selector.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/seqalign.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/setting.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/shortcut.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/shortcut_dict.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/shortcut_manager.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/util.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/vfont.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/viewing.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/wizarding.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/xray.py -> build/lib.linux-x86_64-cpython-39/pymol
copying modules/pymol/xwin.py -> build/lib.linux-x86_64-cpython-39/pymol
creating build/lib.linux-x86_64-cpython-39/pymol/wizard
copying modules/pymol/wizard/__init__.py -> build/lib.linux-x86_64-cpython-39/pymol/wizard
copying modules/pymol/wizard/annotation.py -> build/lib.linux-x86_64-cpython-39/pymol/wizard
copying modules/pymol/wizard/appearance.py -> build/lib.linux-x86_64-cpython-39/pymol/wizard
copying modules/pymol/wizard/benchmark.py -> build/lib.linux-x86_64-cpython-39/pymol/wizard
copying modules/pymol/wizard/box.py -> build/lib.linux-x86_64-cpython-39/pymol/wizard
copying modules/pymol/wizard/charge.py -> build/lib.linux-x86_64-cpython-39/pymol/wizard
copying modules/pymol/wizard/cleanup.py -> build/lib.linux-x86_64-cpython-39/pymol/wizard
copying modules/pymol/wizard/command.py -> build/lib.linux-x86_64-cpython-39/pymol/wizard
copying modules/pymol/wizard/demo.py -> build/lib.linux-x86_64-cpython-39/pymol/wizard
copying modules/pymol/wizard/density.py -> build/lib.linux-x86_64-cpython-39/pymol/wizard
copying modules/pymol/wizard/distance.py -> build/lib.linux-x86_64-cpython-39/pymol/wizard
copying modules/pymol/wizard/dragging.py -> build/lib.linux-x86_64-cpython-39/pymol/wizard
copying modules/pymol/wizard/filter.py -> build/lib.linux-x86_64-cpython-39/pymol/wizard
copying modules/pymol/wizard/label.py -> build/lib.linux-x86_64-cpython-39/pymol/wizard
copying modules/pymol/wizard/measurement.py -> build/lib.linux-x86_64-cpython-39/pymol/wizard
copying modules/pymol/wizard/message.py -> build/lib.linux-x86_64-cpython-39/pymol/wizard
copying modules/pymol/wizard/mutagenesis.py -> build/lib.linux-x86_64-cpython-39/pymol/wizard
copying modules/pymol/wizard/nucmutagenesis.py -> build/lib.linux-x86_64-cpython-39/pymol/wizard
copying modules/pymol/wizard/openvr.py -> build/lib.linux-x86_64-cpython-39/pymol/wizard
copying modules/pymol/wizard/pair_fit.py -> build/lib.linux-x86_64-cpython-39/pymol/wizard
copying modules/pymol/wizard/pseudoatom.py -> build/lib.linux-x86_64-cpython-39/pymol/wizard
copying modules/pymol/wizard/renaming.py -> build/lib.linux-x86_64-cpython-39/pymol/wizard
copying modules/pymol/wizard/sculpting.py -> build/lib.linux-x86_64-cpython-39/pymol/wizard
copying modules/pymol/wizard/security.py -> build/lib.linux-x86_64-cpython-39/pymol/wizard
copying modules/pymol/wizard/stereodemo.py -> build/lib.linux-x86_64-cpython-39/pymol/wizard
copying modules/pymol/wizard/toggle.py -> build/lib.linux-x86_64-cpython-39/pymol/wizard
creating build/lib.linux-x86_64-cpython-39/pymol/stereochemistry
copying modules/pymol/stereochemistry/__init__.py -> build/lib.linux-x86_64-cpython-39/pymol/stereochemistry
creating build/lib.linux-x86_64-cpython-39/pymol/plugins
copying modules/pymol/plugins/__init__.py -> build/lib.linux-x86_64-cpython-39/pymol/plugins
copying modules/pymol/plugins/installation.py -> build/lib.linux-x86_64-cpython-39/pymol/plugins
copying modules/pymol/plugins/legacysupport.py -> build/lib.linux-x86_64-cpython-39/pymol/plugins
copying modules/pymol/plugins/managergui.py -> build/lib.linux-x86_64-cpython-39/pymol/plugins
copying modules/pymol/plugins/managergui_qt.py -> build/lib.linux-x86_64-cpython-39/pymol/plugins
copying modules/pymol/plugins/repository.py -> build/lib.linux-x86_64-cpython-39/pymol/plugins
creating build/lib.linux-x86_64-cpython-39/pymol/Qt
copying modules/pymol/Qt/__init__.py -> build/lib.linux-x86_64-cpython-39/pymol/Qt
copying modules/pymol/Qt/utils.py -> build/lib.linux-x86_64-cpython-39/pymol/Qt
creating build/lib.linux-x86_64-cpython-39/pmg_tk
copying modules/pmg_tk/ColorEditor.py -> build/lib.linux-x86_64-cpython-39/pmg_tk
copying modules/pmg_tk/Demo.py -> build/lib.linux-x86_64-cpython-39/pmg_tk
copying modules/pmg_tk/PMGApp.py -> build/lib.linux-x86_64-cpython-39/pmg_tk
copying modules/pmg_tk/PyMOLMapLoad.py -> build/lib.linux-x86_64-cpython-39/pmg_tk
copying modules/pmg_tk/SetEditor.py -> build/lib.linux-x86_64-cpython-39/pmg_tk
copying modules/pmg_tk/Setting.py -> build/lib.linux-x86_64-cpython-39/pmg_tk
copying modules/pmg_tk/TextEditor.py -> build/lib.linux-x86_64-cpython-39/pmg_tk
copying modules/pmg_tk/__init__.py -> build/lib.linux-x86_64-cpython-39/pmg_tk
copying modules/pmg_tk/volume.py -> build/lib.linux-x86_64-cpython-39/pmg_tk
creating build/lib.linux-x86_64-cpython-39/pmg_tk/startup
copying modules/pmg_tk/startup/__init__.py -> build/lib.linux-x86_64-cpython-39/pmg_tk/startup
creating build/lib.linux-x86_64-cpython-39/pmg_tk/skins
copying modules/pmg_tk/skins/__init__.py -> build/lib.linux-x86_64-cpython-39/pmg_tk/skins
creating build/lib.linux-x86_64-cpython-39/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/ModalWindow.py -> build/lib.linux-x86_64-cpython-39/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/__init__.py -> build/lib.linux-x86_64-cpython-39/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/builder.py -> build/lib.linux-x86_64-cpython-39/pmg_tk/skins/normal
creating build/lib.linux-x86_64-cpython-39/pmg_tk/skins/demo
copying modules/pmg_tk/skins/demo/__init__.py -> build/lib.linux-x86_64-cpython-39/pmg_tk/skins/demo
creating build/lib.linux-x86_64-cpython-39/pmg_qt
copying modules/pmg_qt/TextEditor.py -> build/lib.linux-x86_64-cpython-39/pmg_qt
copying modules/pmg_qt/__init__.py -> build/lib.linux-x86_64-cpython-39/pmg_qt
copying modules/pmg_qt/advanced_settings_gui.py -> build/lib.linux-x86_64-cpython-39/pmg_qt
copying modules/pmg_qt/builder.py -> build/lib.linux-x86_64-cpython-39/pmg_qt
copying modules/pmg_qt/file_dialogs.py -> build/lib.linux-x86_64-cpython-39/pmg_qt
copying modules/pmg_qt/keymapping.py -> build/lib.linux-x86_64-cpython-39/pmg_qt
copying modules/pmg_qt/mimic_pmg_tk.py -> build/lib.linux-x86_64-cpython-39/pmg_qt
copying modules/pmg_qt/mimic_tk.py -> build/lib.linux-x86_64-cpython-39/pmg_qt
copying modules/pmg_qt/properties_dialog.py -> build/lib.linux-x86_64-cpython-39/pmg_qt
copying modules/pmg_qt/pymol_gl_widget.py -> build/lib.linux-x86_64-cpython-39/pmg_qt
copying modules/pmg_qt/pymol_qt_gui.py -> build/lib.linux-x86_64-cpython-39/pmg_qt
copying modules/pmg_qt/shortcut_menu_gui.py -> build/lib.linux-x86_64-cpython-39/pmg_qt
copying modules/pmg_qt/volume.py -> build/lib.linux-x86_64-cpython-39/pmg_qt
creating build/lib.linux-x86_64-cpython-39/pmg_qt/syntax
copying modules/pmg_qt/syntax/__init__.py -> build/lib.linux-x86_64-cpython-39/pmg_qt/syntax
copying modules/pmg_qt/syntax/pml.py -> build/lib.linux-x86_64-cpython-39/pmg_qt/syntax
copying modules/pmg_qt/syntax/pmlparser.py -> build/lib.linux-x86_64-cpython-39/pmg_qt/syntax
copying modules/pmg_qt/syntax/python.py -> build/lib.linux-x86_64-cpython-39/pmg_qt/syntax
creating build/lib.linux-x86_64-cpython-39/pmg_qt/forms
copying modules/pmg_qt/forms/__init__.py -> build/lib.linux-x86_64-cpython-39/pmg_qt/forms
creating build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/__init__.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/arc.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/bond_amber.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/bond_mmff.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/bonds.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/brick.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/cc1.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/charge.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/cif.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/cpv.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/dictdb.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/gamess1.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/gms.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/hetatm.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/io.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/lst.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/mae.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/map.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/mass.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/mmd.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/models.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/mol.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/mol2.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/neighbor.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/pdb.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/pkl.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/place.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/protein.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/protein_amber.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/protein_amber99.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/protein_mmff.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/protein_residues.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/sdf.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/solvate.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/water_amber.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/water_residues.py -> build/lib.linux-x86_64-cpython-39/chempy
copying modules/chempy/xyz.py -> build/lib.linux-x86_64-cpython-39/chempy
creating build/lib.linux-x86_64-cpython-39/chempy/tinker
copying modules/chempy/tinker/__init__.py -> build/lib.linux-x86_64-cpython-39/chempy/tinker
copying modules/chempy/tinker/amber.py -> build/lib.linux-x86_64-cpython-39/chempy/tinker
copying modules/chempy/tinker/keyword.py -> build/lib.linux-x86_64-cpython-39/chempy/tinker
copying modules/chempy/tinker/realtime.py -> build/lib.linux-x86_64-cpython-39/chempy/tinker
copying modules/chempy/tinker/state.py -> build/lib.linux-x86_64-cpython-39/chempy/tinker
creating build/lib.linux-x86_64-cpython-39/chempy/mmtf
copying modules/chempy/mmtf/__init__.py -> build/lib.linux-x86_64-cpython-39/chempy/mmtf
copying modules/chempy/mmtf/io.py -> build/lib.linux-x86_64-cpython-39/chempy/mmtf
creating build/lib.linux-x86_64-cpython-39/chempy/fragments
copying modules/chempy/fragments/__init__.py -> build/lib.linux-x86_64-cpython-39/chempy/fragments
creating build/lib.linux-x86_64-cpython-39/chempy/fast
copying modules/chempy/fast/__init__.py -> build/lib.linux-x86_64-cpython-39/chempy/fast
creating build/lib.linux-x86_64-cpython-39/chempy/champ
copying modules/chempy/champ/__init__.py -> build/lib.linux-x86_64-cpython-39/chempy/champ
copying modules/chempy/champ/amber99.py -> build/lib.linux-x86_64-cpython-39/chempy/champ
copying modules/chempy/champ/assign.py -> build/lib.linux-x86_64-cpython-39/chempy/champ
copying modules/chempy/champ/formal_charges.py -> build/lib.linux-x86_64-cpython-39/chempy/champ
creating build/lib.linux-x86_64-cpython-39/chempy/bmin
copying modules/chempy/bmin/__init__.py -> build/lib.linux-x86_64-cpython-39/chempy/bmin
copying modules/chempy/bmin/commands.py -> build/lib.linux-x86_64-cpython-39/chempy/bmin
copying modules/chempy/bmin/realtime.py -> build/lib.linux-x86_64-cpython-39/chempy/bmin
copying modules/chempy/bmin/state.py -> build/lib.linux-x86_64-cpython-39/chempy/bmin
copying modules/chempy/bmin/util.py -> build/lib.linux-x86_64-cpython-39/chempy/bmin
copying modules/pmg_qt/forms/askpartial.ui -> build/lib.linux-x86_64-cpython-39/pmg_qt/forms
copying modules/pmg_qt/forms/change_confirm.ui -> build/lib.linux-x86_64-cpython-39/pmg_qt/forms
copying modules/pmg_qt/forms/colors.ui -> build/lib.linux-x86_64-cpython-39/pmg_qt/forms
copying modules/pmg_qt/forms/create_shortcut.ui -> build/lib.linux-x86_64-cpython-39/pmg_qt/forms
copying modules/pmg_qt/forms/fetch.ui -> build/lib.linux-x86_64-cpython-39/pmg_qt/forms
copying modules/pmg_qt/forms/help_shortcut.ui -> build/lib.linux-x86_64-cpython-39/pmg_qt/forms
copying modules/pmg_qt/forms/load_aln.ui -> build/lib.linux-x86_64-cpython-39/pmg_qt/forms
copying modules/pmg_qt/forms/load_mae.ui -> build/lib.linux-x86_64-cpython-39/pmg_qt/forms
copying modules/pmg_qt/forms/load_map.ui -> build/lib.linux-x86_64-cpython-39/pmg_qt/forms
copying modules/pmg_qt/forms/load_mtz.ui -> build/lib.linux-x86_64-cpython-39/pmg_qt/forms
copying modules/pmg_qt/forms/load_traj.ui -> build/lib.linux-x86_64-cpython-39/pmg_qt/forms
copying modules/pmg_qt/forms/movieexport.ui -> build/lib.linux-x86_64-cpython-39/pmg_qt/forms
copying modules/pmg_qt/forms/pluginitem.ui -> build/lib.linux-x86_64-cpython-39/pmg_qt/forms
copying modules/pmg_qt/forms/pluginmanager.ui -> build/lib.linux-x86_64-cpython-39/pmg_qt/forms
copying modules/pmg_qt/forms/png.ui -> build/lib.linux-x86_64-cpython-39/pmg_qt/forms
copying modules/pmg_qt/forms/props.ui -> build/lib.linux-x86_64-cpython-39/pmg_qt/forms
copying modules/pmg_qt/forms/render.ui -> build/lib.linux-x86_64-cpython-39/pmg_qt/forms
copying modules/pmg_qt/forms/save_molecule.ui -> build/lib.linux-x86_64-cpython-39/pmg_qt/forms
copying modules/pmg_qt/forms/save_object.ui -> build/lib.linux-x86_64-cpython-39/pmg_qt/forms
copying modules/pmg_qt/forms/shortcut_menu.ui -> build/lib.linux-x86_64-cpython-39/pmg_qt/forms
warning: build_py_pymol: byte-compiling is disabled, skipping.

running build_ext
creating build/temp.linux-x86_64-cpython-39
creating build/temp.linux-x86_64-cpython-39/build
creating build/temp.linux-x86_64-cpython-39/build/generated
creating build/temp.linux-x86_64-cpython-39/contrib
creating build/temp.linux-x86_64-cpython-39/contrib/uiuc
creating build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins
creating build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin
creating build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src
creating build/temp.linux-x86_64-cpython-39/layer0
creating build/temp.linux-x86_64-cpython-39/layer1
creating build/temp.linux-x86_64-cpython-39/layer2
creating build/temp.linux-x86_64-cpython-39/layer3
creating build/temp.linux-x86_64-cpython-39/layer4
creating build/temp.linux-x86_64-cpython-39/layer5
creating build/temp.linux-x86_64-cpython-39/ov
creating build/temp.linux-x86_64-cpython-39/ov/src
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD build/generated/ShaderText.cpp -o build/temp.linux-x86_64-cpython-39/build/generated/ShaderText.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function ‘fio_readv’:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:519:14: warning: comparison of integer expressions of different signedness: ‘fio_size_t’ {aka ‘long int’} and ‘size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
  519 |       if (rc != iov[i].iov_len)
      |              ^~
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘abinit_readline’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:279:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  279 |     for (i = 0; i < strlen(line); ++i) {
      |                   ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  545 |   for (i=0; i<strlen(ang_mom_str); i++) {
      |              ^
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerInitAll’:
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdheader’:
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:191:57: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  191 |   } else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) {
      |                                                         ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:204:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  204 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) {
      |                                                      ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:222:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  222 |     if (input_integer[0] != dcdcordmagic) {
      |                          ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:399:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  399 |     if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) {
      |                                             ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:416:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  416 |     if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) {
      |                                             ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:271:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  271 | if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS);
      | ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:273:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  273 |        if(ok) {
      |        ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdstep’:
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:621:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
  621 |         if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT;
      |                       ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:625:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
  625 |           if ((tmpbuf[2*i]+tmpbuf[2*i+1]) != sizeof(float)*N) return DCD_BADFORMAT;
      |                                           ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable ‘readlen’ set but not used [-Wunused-but-set-variable]
  546 |     fio_size_t readlen; /* number of bytes actually read            */
      |                ^~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:60:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:609:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
  609 | static int fio_write_str(fio_fd fd, const char *str) {
      |            ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:605:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
  605 | static int fio_read_int32(fio_fd fd, int *i) {
      |            ^~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
  459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
      |                   ^~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function ‘fio_readv’:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:519:14: warning: comparison of integer expressions of different signedness: ‘fio_size_t’ {aka ‘long int’} and ‘size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
  519 |       if (rc != iov[i].iov_len)
      |              ^~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘read_next_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable ‘numatoms’ set but not used [-Wunused-but-set-variable]
  103 |   int i, numatoms;
      |          ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘write_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:206:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  206 |     if (fwrite(tmp, sizeof(double), 3*n, namdbin->fd) != 3*n) {
      |                                                       ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerFreeAll’:
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:411:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  411 | if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS);
      | ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:413:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  413 |        return ok;
      |        ^~~~~~
At top level:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
 1097 | static void whereami(FILE *file) {
      |             ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
 1077 | static void thisline(FILE *file) {
      |             ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: ‘fpexpftoc’ defined but not used [-Wunused-function]
 1028 | static int fpexpftoc(char *ftocstr) {
      |            ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: ‘have_keyline’ defined but not used [-Wunused-function]
 1006 | static int have_keyline(FILE *file, const char *keystring1,
      |            ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:962:12: warning: ‘goto_keyline’ defined but not used [-Wunused-function]
  962 | static int goto_keyline(FILE *file, ...) {
      |            ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: ‘strtoupper’ defined but not used [-Wunused-function]
  901 | static char *strtoupper(char *s) {
      |              ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: ‘iswhiteline’ defined but not used [-Wunused-function]
  895 | static int iswhiteline(char *s) {
      |            ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:846:13: warning: ‘eatwhitelines’ defined but not used [-Wunused-function]
  846 | static void eatwhitelines(FILE *file) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:13: warning: ‘eatline’ defined but not used [-Wunused-function]
  835 | static void eatline(FILE * fd, int n)
      |             ^~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: ‘symmetry_expand’ defined but not used [-Wunused-function]
  711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
      |            ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
  585 | static void print_matrix4(const float mat[16]) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:540:13: warning: ‘angular_momentum_expon’ defined but not used [-Wunused-function]
  540 | static void angular_momentum_expon(int  *ang_mom_expon,
      |             ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: ‘del_wavefunction’ defined but not used [-Wunused-function]
  507 | static void del_wavefunction(qm_timestep_t *ts) {
      |             ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: ‘replace_wavefunction’ defined but not used [-Wunused-function]
  490 | static void replace_wavefunction(qm_timestep_t *ts, int n) {
      |             ^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:471:27: warning: ‘add_wavefunction’ defined but not used [-Wunused-function]
  471 | static qm_wavefunction_t* add_wavefunction(qm_timestep_t *ts) {
      |                           ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: ‘init_qmdata’ defined but not used [-Wunused-function]
  437 | static qmdata_t* init_qmdata() {
      |                  ^~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:32:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
  133 | static int get_pte_idx(const char *label)
      |            ^~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:70:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c: In function ‘read_tinker_structure’:
contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:103:5: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
  103 |     strncpy(atom->name, buffer, sizeof(atom->name));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function ‘open_rst_read’:
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable ‘timesteprst’ set but not used [-Wunused-but-set-variable]
   48 |   double  timesteprst;
      |           ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘write_vaspposcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to ‘sizeof’ in ‘strncpy’ call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess]
  360 |     strncpy(tmptype, atom->type, sizeof(atom->type));
      |                                        ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:89:
At top level:
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:40:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
  459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
      |                   ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:31:
In function ‘get_pdb_cryst1’,
    inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:277:9:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:119:3: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 82 [-Wstringop-truncation]
  119 |   strncpy(tmp, record, PDB_RECORD_LENGTH);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘get_pdb_coordinates’,
    inlined from ‘read_next_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:270:9:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:144:5: warning: ‘strncpy’ output may be truncated copying 8 bytes from a string of length 52 [-Wstringop-truncation]
  144 |     strncpy(numstr, record + 30, 8);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:149:5: warning: ‘strncpy’ output may be truncated copying 8 bytes from a string of length 44 [-Wstringop-truncation]
  149 |     strncpy(numstr+10, record + 38, 8);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:154:5: warning: ‘strncpy’ output may be truncated copying 8 bytes from a string of length 36 [-Wstringop-truncation]
  154 |     strncpy(numstr+20, record + 46, 8);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation]
  159 |     strncpy(numstr+30, record + 54, 6);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation]
  164 |     strncpy(numstr+40, record + 60, 6);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c: In function ‘write_psf_structure’:
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:782:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  782 |       if (strlen(atoms[i].type) > fw) {
      |                                 ^
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:103:12: warning: ‘fortread_4’ defined but not used [-Wunused-function]
  103 | static int fortread_4(void *dest, int n, int swap, FILE *fd) {
      |            ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘fort_get_endian_reclen’ defined but not used [-Wunused-function]
   55 | static int fort_get_endian_reclen(int reclen, int word0, int word1,
      |            ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘fort_eat_recmark’ defined but not used [-Wunused-function]
   36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) {
      |            ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/fortread.h:28,
                 from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘swap8_aligned’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:47:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In function ‘get_pdb_fields’,
    inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:299:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 70 [-Wstringop-truncation]
  299 |   strncpy(name, record + 12, 4);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:304:3: warning: ‘strncpy’ output may be truncated copying 1 byte from a string of length 66 [-Wstringop-truncation]
  304 |   strncpy(altloc, record + 16, 1);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:308:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 65 [-Wstringop-truncation]
  308 |   strncpy(resname, record + 17, 4);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:317:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 60 [-Wstringop-truncation]
  317 |   strncpy(resid, record + 22, 4);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘get_pdb_coordinates’,
    inlined from ‘get_pdb_fields’ at contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:326:3,
    inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation]
  159 |     strncpy(numstr+30, record + 54, 6);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation]
  164 |     strncpy(numstr+40, record + 60, 6);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘get_pdb_fields’,
    inlined from ‘read_pdb_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:151:7:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:330:5: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 10 [-Wstringop-truncation]
  330 |     strncpy(segname, record + 72, 4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:339:5: warning: ‘strncpy’ output may be truncated copying 2 bytes from a string of length 6 [-Wstringop-truncation]
  339 |     strncpy(elementsymbol, record + 76, 2);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  545 |   for (i=0; i<strlen(ang_mom_str); i++) {
      |              ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void put_element_ply(PlyFile*, void*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable ‘i’ [-Wunused-variable]
  459 |   int i,j,k;
      |       ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘have_gamess’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1106:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
 1106 |   char word[3][BUFSIZ];
      |        ^~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void ascii_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable ‘i’ [-Wunused-variable]
 1407 |   int i,j,k;
      |       ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void binary_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable ‘i’ [-Wunused-variable]
 1541 |   int i,j,k;
      |       ^
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_basis_stats’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2264:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
 2264 |   char word[7][BUFSIZ];
      |        ^~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_wavefunction’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3573:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
 3573 |   char word[6][BUFSIZ];
      |        ^~~~
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In function ‘get_pdb_header’,
    inlined from ‘open_pdb_read’ at contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:79:7:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:190:5: warning: ‘strncpy’ output may be truncated copying 9 bytes from a string of length 32 [-Wstringop-truncation]
  190 |     strncpy(date, record + 50, 9);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:200:5: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 20 [-Wstringop-truncation]
  200 |     strncpy(pdbcode, record + 62, 4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function ‘read_vaspxml_structure.part.0’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:150:9: warning: ‘strncpy’ specified bound 16 equals destination size [-Wstringop-truncation]
  150 |         strncpy(atom->name, get_pte_label(idx), sizeof(atom->name));
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
At top level:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1002:13: warning: ‘print_input_data’ defined but not used [-Wunused-function]
 1002 | static void print_input_data(qmdata_t *data) {
      |             ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:162:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
  133 | static int get_pte_idx(const char *label)
      |            ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: ‘get_pte_vdw_radius’ defined but not used [-Wunused-function]
  109 | static float get_pte_vdw_radius(const int idx)
      |              ^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: ‘get_pte_mass’ defined but not used [-Wunused-function]
  102 | static float get_pte_mass(const int idx)
      |              ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘get_pte_label’ defined but not used [-Wunused-function]
   95 | static const char *get_pte_label(const int idx)
      |                    ^~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
 1097 | static void whereami(FILE *file) {
      |             ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
 1077 | static void thisline(FILE *file) {
      |             ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: ‘fpexpftoc’ defined but not used [-Wunused-function]
 1028 | static int fpexpftoc(char *ftocstr) {
      |            ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: ‘strtoupper’ defined but not used [-Wunused-function]
  901 | static char *strtoupper(char *s) {
      |              ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: ‘iswhiteline’ defined but not used [-Wunused-function]
  895 | static int iswhiteline(char *s) {
      |            ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
  585 | static void print_matrix4(const float mat[16]) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function ‘read_mmtk_cdf_structure’:
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:730:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
  730 |       if (len > sizeof(name)) {
      |               ^
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function ‘read_mmtk_cdf_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:1060:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 1060 |     for (i=0; i<(3 * mmtk->atom_numberdim); i++) {
      |                ^
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘char* recreate_command_line(int, char**)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
 1334 |   line[0] = '\0';
      |   ~~~~~~~~^~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: at offset 0 to an object with size 0 allocated by ‘malloc’ here
 1333 |   line = (char *) malloc (sizeof(char) * len);
      |                   ~~~~~~~^~~~~~~~~~~~~~~~~~~~
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/Block.cpp -o build/temp.linux-x86_64-cpython-39/layer0/Block.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/ContourSurf.cpp -o build/temp.linux-x86_64-cpython-39/layer0/ContourSurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/Deferred.cpp -o build/temp.linux-x86_64-cpython-39/layer0/Deferred.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int getUniqueResID(char*, int)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable ‘i’ [-Wunused-variable]
  443 |   int i, uid;
      |       ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable ‘j’ [-Wunused-variable]
  484 |   int i, count, atomdata, pos, idx, xyzcount, j;
      |                                               ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable ‘oldChain’ [-Wunused-variable]
  503 |   char oldChain[8];
      |        ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readAngleBonds(molfile_atom_t*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable ‘bondTable’ [-Wunused-variable]
  803 |   int bondTable[32];
      |       ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable ‘j’ [-Wunused-variable]
  807 |   int i, pos, j, k;
      |               ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable ‘modelNum’ [-Wunused-variable]
  811 |   char modelNum[8];
      |        ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable ‘atom’ [-Wunused-variable]
  822 |   molfile_atom_t * atom;
      |                    ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable ‘test’ [-Wunused-variable]
  884 |   int test = parser->nbonds + bnum;
      |       ^~~~
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readRMSDBonds(molfile_atom_t*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable ‘bondTable’ [-Wunused-variable]
  984 |   int bondTable[32];
      |       ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable ‘j’ [-Wunused-variable]
  988 |   int i, pos, j, k;
      |               ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable ‘modelNum’ [-Wunused-variable]
  991 |   char modelNum[8];
      |        ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable ‘atom’ [-Wunused-variable]
 1002 |   molfile_atom_t * atom;
      |                    ^~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:41:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: ‘vasp_timestep_unitcell’ defined but not used [-Wunused-function]
  111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
      |             ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘void* open_file_write(const char*, const char*, int)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable ‘fd’ [-Wunused-variable]
 1409 |   FILE* fd;
      |         ^~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘read_gamess_rundata’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:615:3: warning: ‘strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
  615 |   strncpy(sys_data->basis_string, data->basis_string,
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  616 |           sizeof(sys_data->basis_string));
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:620:3: warning: ‘strncpy’ output may be truncated copying 4096 bytes from a string of length 8191 [-Wstringop-truncation]
  620 |   strncpy(sys_data->runtitle, data->runtitle, sizeof(sys_data->runtitle));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:621:3: warning: ‘strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
  621 |   strncpy(sys_data->geometry, data->geometry, sizeof(sys_data->geometry));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:622:3: warning: ‘strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
  622 |   strncpy(sys_data->version_string, data->version_string,
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  623 |           sizeof(sys_data->version_string));
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  545 |   for (i=0; i<strlen(ang_mom_str); i++) {
      |              ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘read_molden_rundata’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:596:25: warning: variable ‘hessian_data’ set but not used [-Wunused-but-set-variable]
  596 |   molfile_qm_hessian_t *hessian_data;
      |                         ^~~~~~~~~~~~
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/Feedback.cpp -o build/temp.linux-x86_64-cpython-39/layer0/Feedback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
 1097 | static void whereami(FILE *file) {
      |             ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
 1077 | static void thisline(FILE *file) {
      |             ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: ‘have_keyline’ defined but not used [-Wunused-function]
 1006 | static int have_keyline(FILE *file, const char *keystring1,
      |            ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: ‘symmetry_expand’ defined but not used [-Wunused-function]
  711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
      |            ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
  585 | static void print_matrix4(const float mat[16]) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: ‘del_wavefunction’ defined but not used [-Wunused-function]
  507 | static void del_wavefunction(qm_timestep_t *ts) {
      |             ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: ‘replace_wavefunction’ defined but not used [-Wunused-function]
  490 | static void replace_wavefunction(qm_timestep_t *ts, int n) {
      |             ^~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:48:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
  133 | static int get_pte_idx(const char *label)
      |            ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: ‘get_pte_vdw_radius’ defined but not used [-Wunused-function]
  109 | static float get_pte_vdw_radius(const int idx)
      |              ^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: ‘get_pte_mass’ defined but not used [-Wunused-function]
  102 | static float get_pte_mass(const int idx)
      |              ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘get_pte_label’ defined but not used [-Wunused-function]
   95 | static const char *get_pte_label(const int idx)
      |                    ^~~~~~~~~~~~~
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/File.cpp -o build/temp.linux-x86_64-cpython-39/layer0/File.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘read_gamess_structure’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:477:5: warning: ‘strncpy’ specified bound 16 equals destination size [-Wstringop-truncation]
  477 |     strncpy(atom->name, cur_atom->type, sizeof(atom->name));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:478:5: warning: ‘strncpy’ specified bound 16 equals destination size [-Wstringop-truncation]
  478 |     strncpy(atom->type, cur_atom->type, sizeof(atom->type));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_coordinates’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1618:5: warning: ‘strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
 1618 |     strncpy(atm->type, atname, sizeof(atm->type));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/GraphicsUtil.cpp -o build/temp.linux-x86_64-cpython-39/layer0/GraphicsUtil.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:41:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: ‘vasp_timestep_unitcell’ defined but not used [-Wunused-function]
  111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
      |             ^~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/Map.cpp -o build/temp.linux-x86_64-cpython-39/layer0/Map.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/Matrix.cpp -o build/temp.linux-x86_64-cpython-39/layer0/Matrix.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/MemoryUsage.cpp -o build/temp.linux-x86_64-cpython-39/layer0/MemoryUsage.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_basis_options’:
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/Parse.cpp -o build/temp.linux-x86_64-cpython-39/layer0/Parse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1422:5: warning: ‘strncat’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation]
 1422 |     strncat(data->basis_string, &data->gbasis[3], 1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1411:5: warning: ‘strncat’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation]
 1411 |     strncat(data->basis_string, &data->gbasis[2], 1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘read_molden_structure’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:350:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
  350 |       strncpy(atom->type, atname, sizeof(atom->type));
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:351:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
  351 |       strncpy(atom->name, atname, sizeof(atom->name));
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:317:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
  317 |       strncpy(atom->name, atname,     sizeof(atom->name));
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:326:7: warning: ‘strncpy’ output may be truncated copying 11 bytes from a string of length 1023 [-Wstringop-truncation]
  326 |       strncpy(data->atoms[i].type, atname, sizeof(data->atoms[i].type));
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In function ‘vtf_error’,
    inlined from ‘vtf_read_bonds’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1203:5,
    inlined from ‘vtf_read_bonds’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1193:12:
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:3: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
  147 |   sprintf(message, "vtfplugin:%d: error: %s: \"%s\"\n",
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  148 |           vtf_lineno, msg, line);
      |           ~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/PostProcess.cpp -o build/temp.linux-x86_64-cpython-39/layer0/PostProcess.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/ShaderPrg.cpp -o build/temp.linux-x86_64-cpython-39/layer0/ShaderPrg.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In function ‘vtf_parse_atom’,
    inlined from ‘vtf_parse_structure’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:812:24,
    inlined from ‘_vtf_open_file_read’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:944:5,
    inlined from ‘vtf_open_file_read’ at contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:970:10:
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:538:9: warning: ‘strncat’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation]
  538 |         strncat(msg, keyword, 200);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:629:7: warning: ‘strncat’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation]
  629 |       strncat(msg, keyword, 200);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/Tetsurf.cpp -o build/temp.linux-x86_64-cpython-39/layer0/Tetsurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/Tracker.cpp -o build/temp.linux-x86_64-cpython-39/layer0/Tracker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/Util.cpp -o build/temp.linux-x86_64-cpython-39/layer0/Util.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/Vector.cpp -o build/temp.linux-x86_64-cpython-39/layer0/Vector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/ccealignmodule.cpp -o build/temp.linux-x86_64-cpython-39/layer0/ccealignmodule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/os_gl.cpp -o build/temp.linux-x86_64-cpython-39/layer0/os_gl.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/Pixmap.cpp -o build/temp.linux-x86_64-cpython-39/layer0/Pixmap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/Err.cpp -o build/temp.linux-x86_64-cpython-39/layer0/Err.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:57:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_structure’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  292 |   if (NULL == fgets(fbuffer, 1024, data->file))
      |   ^~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  295 |     if (NULL == fgets(fbuffer, 1024, data->file))
      |     ^~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:362:5: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation]
  362 |     strncpy(atom->name, buf, sizeof(atom->name));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/ButMode.cpp -o build/temp.linux-x86_64-cpython-39/layer1/ButMode.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c: In function ‘read_xyz_structure’:
contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:133:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
  133 |       strncpy(atom->name, buffer, sizeof(atom->name));
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:127:7: warning: ‘strncpy’ specified bound 16 equals destination size [-Wstringop-truncation]
  127 |       strncpy(atom->name, get_pte_label(idx), sizeof(atom->name));
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_structure’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:267:5: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation]
  267 |     strncpy(atom->name, buf, sizeof(atom->name));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/COLLADA.cpp -o build/temp.linux-x86_64-cpython-39/layer1/COLLADA.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/Color.cpp -o build/temp.linux-x86_64-cpython-39/layer1/Color.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/Basis.cpp -o build/temp.linux-x86_64-cpython-39/layer1/Basis.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In function ‘get_fmoxyz’,
    inlined from ‘get_input_structure’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1537:12:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1682:5: warning: ‘strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
 1682 |     strncpy(atm->type, atname, sizeof(atm->type));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/Extrude.cpp -o build/temp.linux-x86_64-cpython-39/layer1/Extrude.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/FontGLUT.cpp -o build/temp.linux-x86_64-cpython-39/layer1/FontGLUT.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘get_atom_radius’:
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable ‘type’ set but not used [-Wunused-but-set-variable]
  166 |   char *name, *type;
      |                ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable ‘name’ set but not used [-Wunused-but-set-variable]
  166 |   char *name, *type;
      |         ^~~~
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/FontGLUT9x15.cpp -o build/temp.linux-x86_64-cpython-39/layer1/FontGLUT9x15.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In function ‘get_pqr_cryst1’,
    inlined from ‘read_pqr_timestep’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:319:9:
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:109:3: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation]
  109 |   strncpy(tmp, record, PQR_RECORD_LENGTH);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘get_pqr_fields’,
    inlined from ‘read_pqr_structure’ at contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:268:7:
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:137:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 68 [-Wstringop-truncation]
  137 |   strncpy(name, record+12, 4);    name[4] = 0;
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:138:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 63 [-Wstringop-truncation]
  138 |   strncpy(resname, record+17, 4); resname[4] = 0;
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:139:3: warning: ‘strncpy’ output may be truncated copying 1 byte from a string of length 59 [-Wstringop-truncation]
  139 |   strncpy(chain, record+21, 1);   chain[1] = 0;
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:140:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 58 [-Wstringop-truncation]
  140 |   strncpy(resid, record+22, 4);   resid[4] = 0;
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/FontGLUTHel12.cpp -o build/temp.linux-x86_64-cpython-39/layer1/FontGLUTHel12.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/FontType.cpp -o build/temp.linux-x86_64-cpython-39/layer1/FontType.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/Ortho.cpp -o build/temp.linux-x86_64-cpython-39/layer1/Ortho.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/PConv.cpp -o build/temp.linux-x86_64-cpython-39/layer1/PConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/Pop.cpp -o build/temp.linux-x86_64-cpython-39/layer1/Pop.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/Triangle.cpp -o build/temp.linux-x86_64-cpython-39/layer0/Triangle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_proc_mem.isra’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1279:5: warning: ‘strncpy’ output may be truncated copying 256 bytes from a string of length 8191 [-Wstringop-truncation]
 1279 |     strncpy(data->memory,&word[2][0],sizeof(data->memory));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1272:5: warning: ‘strncpy’ specified bound 256 equals destination size [-Wstringop-truncation]
 1272 |     strncpy(data->memory,trimright(temp),sizeof(data->memory));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/MyPNG.cpp -o build/temp.linux-x86_64-cpython-39/layer0/MyPNG.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_contrl’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1981:3: warning: ‘strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation]
 1981 |   strncpy(data->geometry, trimright(temp+7), sizeof(data->geometry));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/Ray.cpp -o build/temp.linux-x86_64-cpython-39/layer1/Ray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/Isosurf.cpp -o build/temp.linux-x86_64-cpython-39/layer0/Isosurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/FontGLUTHel18.cpp -o build/temp.linux-x86_64-cpython-39/layer1/FontGLUTHel18.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_contrl_firefly’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1818:3: warning: ‘strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation]
 1818 |   strncpy(data->geometry, trimright(temp+7), sizeof(data->geometry));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/GenericBuffer.cpp -o build/temp.linux-x86_64-cpython-39/layer0/GenericBuffer.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/FontGLUTHel10.cpp -o build/temp.linux-x86_64-cpython-39/layer1/FontGLUTHel10.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/Scene.cpp -o build/temp.linux-x86_64-cpython-39/layer1/Scene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/Util2.cpp -o build/temp.linux-x86_64-cpython-39/layer0/Util2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
In function ‘symmetry_expand’,
    inlined from ‘get_traj_frame.constprop’ at contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2931:7:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:819:5: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 10 [-Wstringop-truncation]
  819 |     strncpy((*atoms)[i].type, (*atoms)[indexmap[i]].type, 10);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/Match.cpp -o build/temp.linux-x86_64-cpython-39/layer0/Match.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/ScenePicking.cpp -o build/temp.linux-x86_64-cpython-39/layer1/ScenePicking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/Field.cpp -o build/temp.linux-x86_64-cpython-39/layer0/Field.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/Word.cpp -o build/temp.linux-x86_64-cpython-39/layer0/Word.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/SceneRender.cpp -o build/temp.linux-x86_64-cpython-39/layer1/SceneRender.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/CarveHelper.cpp -o build/temp.linux-x86_64-cpython-39/layer0/CarveHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/ShaderMgr.cpp -o build/temp.linux-x86_64-cpython-39/layer0/ShaderMgr.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/Crystal.cpp -o build/temp.linux-x86_64-cpython-39/layer0/Crystal.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/Seq.cpp -o build/temp.linux-x86_64-cpython-39/layer1/Seq.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/Shaker.cpp -o build/temp.linux-x86_64-cpython-39/layer1/Shaker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/PyMOLObject.cpp -o build/temp.linux-x86_64-cpython-39/layer1/PyMOLObject.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function ‘int {anonymous}::write_structure(void*, int, const molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1904:9: warning: unused variable ‘last_ctnumber’ [-Wunused-variable]
 1904 |     int last_ctnumber = -1;
      |         ^~~~~~~~~~~~~
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/SymOpPConv.cpp -o build/temp.linux-x86_64-cpython-39/layer1/SymOpPConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/Sphere.cpp -o build/temp.linux-x86_64-cpython-39/layer0/Sphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/Symmetry.cpp -o build/temp.linux-x86_64-cpython-39/layer1/Symmetry.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/TypeFace.cpp -o build/temp.linux-x86_64-cpython-39/layer1/TypeFace.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/Wizard.cpp -o build/temp.linux-x86_64-cpython-39/layer1/Wizard.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/Character.cpp -o build/temp.linux-x86_64-cpython-39/layer1/Character.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/CGO.cpp -o build/temp.linux-x86_64-cpython-39/layer1/CGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/FontGLUT8x13.cpp -o build/temp.linux-x86_64-cpython-39/layer1/FontGLUT8x13.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/SymOpTools.cpp -o build/temp.linux-x86_64-cpython-39/layer1/SymOpTools.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/marching_cubes.cpp -o build/temp.linux-x86_64-cpython-39/layer0/marching_cubes.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/View.cpp -o build/temp.linux-x86_64-cpython-39/layer1/View.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/AtomInfo.cpp -o build/temp.linux-x86_64-cpython-39/layer2/AtomInfo.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/Movie.cpp -o build/temp.linux-x86_64-cpython-39/layer1/Movie.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/BondTypeHistory.cpp -o build/temp.linux-x86_64-cpython-39/layer2/BondTypeHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/CifMoleculeReader.cpp -o build/temp.linux-x86_64-cpython-39/layer2/CifMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/Picking.cpp -o build/temp.linux-x86_64-cpython-39/layer1/Picking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/DistSet.cpp -o build/temp.linux-x86_64-cpython-39/layer2/DistSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/HydrogenAdder.cpp -o build/temp.linux-x86_64-cpython-39/layer2/HydrogenAdder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/SceneRay.cpp -o build/temp.linux-x86_64-cpython-39/layer1/SceneRay.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/SymOp.cpp -o build/temp.linux-x86_64-cpython-39/layer1/SymOp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/Texture.cpp -o build/temp.linux-x86_64-cpython-39/layer0/Texture.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/MmtfMoleculeReader.cpp -o build/temp.linux-x86_64-cpython-39/layer2/MmtfMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/MolV3000.cpp -o build/temp.linux-x86_64-cpython-39/layer2/MolV3000.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer0/MemoryDebug.cpp -o build/temp.linux-x86_64-cpython-39/layer0/MemoryDebug.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/Font.cpp -o build/temp.linux-x86_64-cpython-39/layer1/Font.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/ObjectCGO.cpp -o build/temp.linux-x86_64-cpython-39/layer2/ObjectCGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/ScrollBar.cpp -o build/temp.linux-x86_64-cpython-39/layer1/ScrollBar.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/ObjectDist.cpp -o build/temp.linux-x86_64-cpython-39/layer2/ObjectDist.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/CifFile.cpp -o build/temp.linux-x86_64-cpython-39/layer2/CifFile.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/Text.cpp -o build/temp.linux-x86_64-cpython-39/layer1/Text.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/ObjectGadgetRamp.cpp -o build/temp.linux-x86_64-cpython-39/layer2/ObjectGadgetRamp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/ObjectMap.cpp -o build/temp.linux-x86_64-cpython-39/layer2/ObjectMap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer1/Wizard.cpp: In member function ‘virtual int CWizard::release(int, int, int, int)’:
layer1/Wizard.cpp:571:18: warning: unused variable ‘wiz’ [-Wunused-variable]
  571 |         if (auto wiz = WizardGet(G)) {
      |                  ^~~
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/ObjectMolecule.cpp -o build/temp.linux-x86_64-cpython-39/layer2/ObjectMolecule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/ObjectMolecule3.cpp -o build/temp.linux-x86_64-cpython-39/layer2/ObjectMolecule3.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/ObjectSurface.cpp -o build/temp.linux-x86_64-cpython-39/layer2/ObjectSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/ObjectAlignment.cpp -o build/temp.linux-x86_64-cpython-39/layer2/ObjectAlignment.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/Setting.cpp -o build/temp.linux-x86_64-cpython-39/layer1/Setting.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/RepAngle.cpp -o build/temp.linux-x86_64-cpython-39/layer2/RepAngle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/Mol2Typing.cpp -o build/temp.linux-x86_64-cpython-39/layer2/Mol2Typing.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/AssemblyHelpers.cpp -o build/temp.linux-x86_64-cpython-39/layer2/AssemblyHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/RepCylBond.cpp -o build/temp.linux-x86_64-cpython-39/layer2/RepCylBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/P.cpp -o build/temp.linux-x86_64-cpython-39/layer1/P.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/RepDistDash.cpp -o build/temp.linux-x86_64-cpython-39/layer2/RepDistDash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/MmodTyping.cpp -o build/temp.linux-x86_64-cpython-39/layer2/MmodTyping.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/RepDot.cpp -o build/temp.linux-x86_64-cpython-39/layer2/RepDot.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/RepLabel.cpp -o build/temp.linux-x86_64-cpython-39/layer2/RepLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/RepNonbonded.cpp -o build/temp.linux-x86_64-cpython-39/layer2/RepNonbonded.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/RepRibbon.cpp -o build/temp.linux-x86_64-cpython-39/layer2/RepRibbon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/GadgetSet.cpp -o build/temp.linux-x86_64-cpython-39/layer2/GadgetSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer2/ObjectMap.cpp: In function ‘int ObjectMapNumPyArrayToMapState(PyMOLGlobals*, ObjectMapState*, PyObject*, int)’:
layer2/ObjectMap.cpp:5595:10: warning: unused variable ‘ptr’ [-Wunused-variable]
 5595 |   void * ptr;
      |          ^~~
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/ObjectSlice.cpp -o build/temp.linux-x86_64-cpython-39/layer2/ObjectSlice.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/RepSphereGenerate.cpp -o build/temp.linux-x86_64-cpython-39/layer2/RepSphereGenerate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/RepSurface.cpp -o build/temp.linux-x86_64-cpython-39/layer2/RepSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/ObjectCallback.cpp -o build/temp.linux-x86_64-cpython-39/layer2/ObjectCallback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/Sculpt.cpp -o build/temp.linux-x86_64-cpython-39/layer2/Sculpt.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/AtomInfoHistory.cpp -o build/temp.linux-x86_64-cpython-39/layer2/AtomInfoHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/SideChainHelper.cpp -o build/temp.linux-x86_64-cpython-39/layer2/SideChainHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer3/AtomIterators.cpp -o build/temp.linux-x86_64-cpython-39/layer3/AtomIterators.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer3/Editor.cpp -o build/temp.linux-x86_64-cpython-39/layer3/Editor.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/RepEllipsoid.cpp -o build/temp.linux-x86_64-cpython-39/layer2/RepEllipsoid.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/Control.cpp -o build/temp.linux-x86_64-cpython-39/layer1/Control.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/SceneMouse.cpp -o build/temp.linux-x86_64-cpython-39/layer1/SceneMouse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/RepNonbondedSphere.cpp -o build/temp.linux-x86_64-cpython-39/layer2/RepNonbondedSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer3/ExecutivePython.cpp -o build/temp.linux-x86_64-cpython-39/layer3/ExecutivePython.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/ObjectGroup.cpp -o build/temp.linux-x86_64-cpython-39/layer2/ObjectGroup.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/RepCartoon.cpp -o build/temp.linux-x86_64-cpython-39/layer2/RepCartoon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/ObjectGadget.cpp -o build/temp.linux-x86_64-cpython-39/layer2/ObjectGadget.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/RepDistLabel.cpp -o build/temp.linux-x86_64-cpython-39/layer2/RepDistLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer3/MoleculeExporter.cpp -o build/temp.linux-x86_64-cpython-39/layer3/MoleculeExporter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer3/PlugIOManager.cpp -o build/temp.linux-x86_64-cpython-39/layer3/PlugIOManager.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer3/Seeker.cpp -o build/temp.linux-x86_64-cpython-39/layer3/Seeker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/RepDihedral.cpp -o build/temp.linux-x86_64-cpython-39/layer2/RepDihedral.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer3/SelectorTmp.cpp -o build/temp.linux-x86_64-cpython-39/layer3/SelectorTmp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/RepSphereImmediate.cpp -o build/temp.linux-x86_64-cpython-39/layer2/RepSphereImmediate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/VFont.cpp -o build/temp.linux-x86_64-cpython-39/layer2/VFont.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/ObjectVolume.cpp -o build/temp.linux-x86_64-cpython-39/layer2/ObjectVolume.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer3/SpecRecSpecial.cpp -o build/temp.linux-x86_64-cpython-39/layer3/SpecRecSpecial.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/RepSphere.cpp -o build/temp.linux-x86_64-cpython-39/layer2/RepSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer4/Menu.cpp -o build/temp.linux-x86_64-cpython-39/layer4/Menu.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/RepMesh.cpp -o build/temp.linux-x86_64-cpython-39/layer2/RepMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer5/PyMOL.cpp -o build/temp.linux-x86_64-cpython-39/layer5/PyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer1/Rep.cpp -o build/temp.linux-x86_64-cpython-39/layer1/Rep.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer3/CifDataValueFormatter.cpp -o build/temp.linux-x86_64-cpython-39/layer3/CifDataValueFormatter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer5/main.cpp -o build/temp.linux-x86_64-cpython-39/layer5/main.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD ov/src/OVHeap.cpp -o build/temp.linux-x86_64-cpython-39/ov/src/OVHeap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD ov/src/OVLexicon.cpp -o build/temp.linux-x86_64-cpython-39/ov/src/OVLexicon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD ov/src/OVHeapArray.cpp -o build/temp.linux-x86_64-cpython-39/ov/src/OVHeapArray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/CoordSet.cpp -o build/temp.linux-x86_64-cpython-39/layer2/CoordSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD ov/src/OVOneToOne.cpp -o build/temp.linux-x86_64-cpython-39/ov/src/OVOneToOne.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD ov/src/OVOneToAny.cpp -o build/temp.linux-x86_64-cpython-39/ov/src/OVOneToAny.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer3/MaeExportHelpers.cpp -o build/temp.linux-x86_64-cpython-39/layer3/MaeExportHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD ov/src/ov_utility.cpp -o build/temp.linux-x86_64-cpython-39/ov/src/ov_utility.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer4/PopUp.cpp -o build/temp.linux-x86_64-cpython-39/layer4/PopUp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer4/Cmd.cpp -o build/temp.linux-x86_64-cpython-39/layer4/Cmd.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD ov/src/OVRandom.cpp -o build/temp.linux-x86_64-cpython-39/ov/src/OVRandom.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer3/SpecRec.cpp -o build/temp.linux-x86_64-cpython-39/layer3/SpecRec.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer3/RingFinder.cpp -o build/temp.linux-x86_64-cpython-39/layer3/RingFinder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer3/Executive.cpp -o build/temp.linux-x86_64-cpython-39/layer3/Executive.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/SculptCache.cpp -o build/temp.linux-x86_64-cpython-39/layer2/SculptCache.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD ov/src/OVContext.cpp -o build/temp.linux-x86_64-cpython-39/ov/src/OVContext.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer3/MovieScene.cpp -o build/temp.linux-x86_64-cpython-39/layer3/MovieScene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/ObjectMesh.cpp -o build/temp.linux-x86_64-cpython-39/layer2/ObjectMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer3/Selector.cpp -o build/temp.linux-x86_64-cpython-39/layer3/Selector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer5/TestPyMOL.cpp -o build/temp.linux-x86_64-cpython-39/layer5/TestPyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/RepWireBond.cpp -o build/temp.linux-x86_64-cpython-39/layer2/RepWireBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
layer3/Selector.cpp: In function ‘pymol::Result<> SelectorLoadCoords(PyMOLGlobals*, PyObject*, int, int)’:
layer3/Selector.cpp:5718:24: warning: unused variable ‘itemsize’ [-Wunused-variable]
 5718 |   int a, b, nAtom = 0, itemsize;
      |                        ^~~~~~~~
layer3/Selector.cpp:5723:10: warning: unused variable ‘ptr’ [-Wunused-variable]
 5723 |   void * ptr;
      |          ^~~
g++ -pthread -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD layer2/ObjectMolecule2.cpp -o build/temp.linux-x86_64-cpython-39/layer2/ObjectMolecule2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp
g++ -pthread -std=c++11 -shared -Wl,-rpath=/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/lib -fno-semantic-interposition build/temp.linux-x86_64-cpython-39/build/generated/ShaderText.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-x86_64-cpython-39/layer0/Block.o build/temp.linux-x86_64-cpython-39/layer0/CarveHelper.o build/temp.linux-x86_64-cpython-39/layer0/ContourSurf.o build/temp.linux-x86_64-cpython-39/layer0/Crystal.o build/temp.linux-x86_64-cpython-39/layer0/Deferred.o build/temp.linux-x86_64-cpython-39/layer0/Err.o build/temp.linux-x86_64-cpython-39/layer0/Feedback.o build/temp.linux-x86_64-cpython-39/layer0/Field.o build/temp.linux-x86_64-cpython-39/layer0/File.o build/temp.linux-x86_64-cpython-39/layer0/GenericBuffer.o build/temp.linux-x86_64-cpython-39/layer0/GraphicsUtil.o build/temp.linux-x86_64-cpython-39/layer0/Isosurf.o build/temp.linux-x86_64-cpython-39/layer0/Map.o build/temp.linux-x86_64-cpython-39/layer0/Match.o build/temp.linux-x86_64-cpython-39/layer0/Matrix.o build/temp.linux-x86_64-cpython-39/layer0/MemoryDebug.o build/temp.linux-x86_64-cpython-39/layer0/MemoryUsage.o build/temp.linux-x86_64-cpython-39/layer0/MyPNG.o build/temp.linux-x86_64-cpython-39/layer0/Parse.o build/temp.linux-x86_64-cpython-39/layer0/Pixmap.o build/temp.linux-x86_64-cpython-39/layer0/PostProcess.o build/temp.linux-x86_64-cpython-39/layer0/ShaderMgr.o build/temp.linux-x86_64-cpython-39/layer0/ShaderPrg.o build/temp.linux-x86_64-cpython-39/layer0/Sphere.o build/temp.linux-x86_64-cpython-39/layer0/Tetsurf.o build/temp.linux-x86_64-cpython-39/layer0/Texture.o build/temp.linux-x86_64-cpython-39/layer0/Tracker.o build/temp.linux-x86_64-cpython-39/layer0/Triangle.o build/temp.linux-x86_64-cpython-39/layer0/Util.o build/temp.linux-x86_64-cpython-39/layer0/Util2.o build/temp.linux-x86_64-cpython-39/layer0/Vector.o build/temp.linux-x86_64-cpython-39/layer0/Word.o build/temp.linux-x86_64-cpython-39/layer0/ccealignmodule.o build/temp.linux-x86_64-cpython-39/layer0/marching_cubes.o build/temp.linux-x86_64-cpython-39/layer0/os_gl.o build/temp.linux-x86_64-cpython-39/layer1/Basis.o build/temp.linux-x86_64-cpython-39/layer1/ButMode.o build/temp.linux-x86_64-cpython-39/layer1/CGO.o build/temp.linux-x86_64-cpython-39/layer1/COLLADA.o build/temp.linux-x86_64-cpython-39/layer1/Character.o build/temp.linux-x86_64-cpython-39/layer1/Color.o build/temp.linux-x86_64-cpython-39/layer1/Control.o build/temp.linux-x86_64-cpython-39/layer1/Extrude.o build/temp.linux-x86_64-cpython-39/layer1/Font.o build/temp.linux-x86_64-cpython-39/layer1/FontGLUT.o build/temp.linux-x86_64-cpython-39/layer1/FontGLUT8x13.o build/temp.linux-x86_64-cpython-39/layer1/FontGLUT9x15.o build/temp.linux-x86_64-cpython-39/layer1/FontGLUTHel10.o build/temp.linux-x86_64-cpython-39/layer1/FontGLUTHel12.o build/temp.linux-x86_64-cpython-39/layer1/FontGLUTHel18.o build/temp.linux-x86_64-cpython-39/layer1/FontType.o build/temp.linux-x86_64-cpython-39/layer1/Movie.o build/temp.linux-x86_64-cpython-39/layer1/Ortho.o build/temp.linux-x86_64-cpython-39/layer1/P.o build/temp.linux-x86_64-cpython-39/layer1/PConv.o build/temp.linux-x86_64-cpython-39/layer1/Picking.o build/temp.linux-x86_64-cpython-39/layer1/Pop.o build/temp.linux-x86_64-cpython-39/layer1/PyMOLObject.o build/temp.linux-x86_64-cpython-39/layer1/Ray.o build/temp.linux-x86_64-cpython-39/layer1/Rep.o build/temp.linux-x86_64-cpython-39/layer1/Scene.o build/temp.linux-x86_64-cpython-39/layer1/SceneMouse.o build/temp.linux-x86_64-cpython-39/layer1/ScenePicking.o build/temp.linux-x86_64-cpython-39/layer1/SceneRay.o build/temp.linux-x86_64-cpython-39/layer1/SceneRender.o build/temp.linux-x86_64-cpython-39/layer1/ScrollBar.o build/temp.linux-x86_64-cpython-39/layer1/Seq.o build/temp.linux-x86_64-cpython-39/layer1/Setting.o build/temp.linux-x86_64-cpython-39/layer1/Shaker.o build/temp.linux-x86_64-cpython-39/layer1/SymOp.o build/temp.linux-x86_64-cpython-39/layer1/SymOpPConv.o build/temp.linux-x86_64-cpython-39/layer1/SymOpTools.o build/temp.linux-x86_64-cpython-39/layer1/Symmetry.o build/temp.linux-x86_64-cpython-39/layer1/Text.o build/temp.linux-x86_64-cpython-39/layer1/TypeFace.o build/temp.linux-x86_64-cpython-39/layer1/View.o build/temp.linux-x86_64-cpython-39/layer1/Wizard.o build/temp.linux-x86_64-cpython-39/layer2/AssemblyHelpers.o build/temp.linux-x86_64-cpython-39/layer2/AtomInfo.o build/temp.linux-x86_64-cpython-39/layer2/AtomInfoHistory.o build/temp.linux-x86_64-cpython-39/layer2/BondTypeHistory.o build/temp.linux-x86_64-cpython-39/layer2/CifFile.o build/temp.linux-x86_64-cpython-39/layer2/CifMoleculeReader.o build/temp.linux-x86_64-cpython-39/layer2/CoordSet.o build/temp.linux-x86_64-cpython-39/layer2/DistSet.o build/temp.linux-x86_64-cpython-39/layer2/GadgetSet.o build/temp.linux-x86_64-cpython-39/layer2/HydrogenAdder.o build/temp.linux-x86_64-cpython-39/layer2/MmodTyping.o build/temp.linux-x86_64-cpython-39/layer2/MmtfMoleculeReader.o build/temp.linux-x86_64-cpython-39/layer2/Mol2Typing.o build/temp.linux-x86_64-cpython-39/layer2/MolV3000.o build/temp.linux-x86_64-cpython-39/layer2/ObjectAlignment.o build/temp.linux-x86_64-cpython-39/layer2/ObjectCGO.o build/temp.linux-x86_64-cpython-39/layer2/ObjectCallback.o build/temp.linux-x86_64-cpython-39/layer2/ObjectDist.o build/temp.linux-x86_64-cpython-39/layer2/ObjectGadget.o build/temp.linux-x86_64-cpython-39/layer2/ObjectGadgetRamp.o build/temp.linux-x86_64-cpython-39/layer2/ObjectGroup.o build/temp.linux-x86_64-cpython-39/layer2/ObjectMap.o build/temp.linux-x86_64-cpython-39/layer2/ObjectMesh.o build/temp.linux-x86_64-cpython-39/layer2/ObjectMolecule.o build/temp.linux-x86_64-cpython-39/layer2/ObjectMolecule2.o build/temp.linux-x86_64-cpython-39/layer2/ObjectMolecule3.o build/temp.linux-x86_64-cpython-39/layer2/ObjectSlice.o build/temp.linux-x86_64-cpython-39/layer2/ObjectSurface.o build/temp.linux-x86_64-cpython-39/layer2/ObjectVolume.o build/temp.linux-x86_64-cpython-39/layer2/RepAngle.o build/temp.linux-x86_64-cpython-39/layer2/RepCartoon.o build/temp.linux-x86_64-cpython-39/layer2/RepCylBond.o build/temp.linux-x86_64-cpython-39/layer2/RepDihedral.o build/temp.linux-x86_64-cpython-39/layer2/RepDistDash.o build/temp.linux-x86_64-cpython-39/layer2/RepDistLabel.o build/temp.linux-x86_64-cpython-39/layer2/RepDot.o build/temp.linux-x86_64-cpython-39/layer2/RepEllipsoid.o build/temp.linux-x86_64-cpython-39/layer2/RepLabel.o build/temp.linux-x86_64-cpython-39/layer2/RepMesh.o build/temp.linux-x86_64-cpython-39/layer2/RepNonbonded.o build/temp.linux-x86_64-cpython-39/layer2/RepNonbondedSphere.o build/temp.linux-x86_64-cpython-39/layer2/RepRibbon.o build/temp.linux-x86_64-cpython-39/layer2/RepSphere.o build/temp.linux-x86_64-cpython-39/layer2/RepSphereGenerate.o build/temp.linux-x86_64-cpython-39/layer2/RepSphereImmediate.o build/temp.linux-x86_64-cpython-39/layer2/RepSurface.o build/temp.linux-x86_64-cpython-39/layer2/RepWireBond.o build/temp.linux-x86_64-cpython-39/layer2/Sculpt.o build/temp.linux-x86_64-cpython-39/layer2/SculptCache.o build/temp.linux-x86_64-cpython-39/layer2/SideChainHelper.o build/temp.linux-x86_64-cpython-39/layer2/VFont.o build/temp.linux-x86_64-cpython-39/layer3/AtomIterators.o build/temp.linux-x86_64-cpython-39/layer3/CifDataValueFormatter.o build/temp.linux-x86_64-cpython-39/layer3/Editor.o build/temp.linux-x86_64-cpython-39/layer3/Executive.o build/temp.linux-x86_64-cpython-39/layer3/ExecutivePython.o build/temp.linux-x86_64-cpython-39/layer3/MaeExportHelpers.o build/temp.linux-x86_64-cpython-39/layer3/MoleculeExporter.o build/temp.linux-x86_64-cpython-39/layer3/MovieScene.o build/temp.linux-x86_64-cpython-39/layer3/PlugIOManager.o build/temp.linux-x86_64-cpython-39/layer3/RingFinder.o build/temp.linux-x86_64-cpython-39/layer3/Seeker.o build/temp.linux-x86_64-cpython-39/layer3/Selector.o build/temp.linux-x86_64-cpython-39/layer3/SelectorTmp.o build/temp.linux-x86_64-cpython-39/layer3/SpecRec.o build/temp.linux-x86_64-cpython-39/layer3/SpecRecSpecial.o build/temp.linux-x86_64-cpython-39/layer4/Cmd.o build/temp.linux-x86_64-cpython-39/layer4/Menu.o build/temp.linux-x86_64-cpython-39/layer4/PopUp.o build/temp.linux-x86_64-cpython-39/layer5/PyMOL.o build/temp.linux-x86_64-cpython-39/layer5/TestPyMOL.o build/temp.linux-x86_64-cpython-39/layer5/main.o build/temp.linux-x86_64-cpython-39/ov/src/OVContext.o build/temp.linux-x86_64-cpython-39/ov/src/OVHeap.o build/temp.linux-x86_64-cpython-39/ov/src/OVHeapArray.o build/temp.linux-x86_64-cpython-39/ov/src/OVLexicon.o build/temp.linux-x86_64-cpython-39/ov/src/OVOneToAny.o build/temp.linux-x86_64-cpython-39/ov/src/OVOneToOne.o build/temp.linux-x86_64-cpython-39/ov/src/OVRandom.o build/temp.linux-x86_64-cpython-39/ov/src/ov_utility.o -L/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/lib -lpng -lfreetype -lxml2 -lGL -lGLEW -lnetcdf -o build/lib.linux-x86_64-cpython-39/pymol/_cmd.cpython-39-x86_64-linux-gnu.so -fopenmp
creating build/temp.linux-x86_64-cpython-39/contrib/champ
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -Icontrib/champ -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/champ/champ.c -o build/temp.linux-x86_64-cpython-39/contrib/champ/champ.o
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -Icontrib/champ -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/champ/champ_module.c -o build/temp.linux-x86_64-cpython-39/contrib/champ/champ_module.o
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -Icontrib/champ -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/champ/chiral.c -o build/temp.linux-x86_64-cpython-39/contrib/champ/chiral.o
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -Icontrib/champ -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/champ/err2.c -o build/temp.linux-x86_64-cpython-39/contrib/champ/err2.o
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -Icontrib/champ -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/champ/feedback2.c -o build/temp.linux-x86_64-cpython-39/contrib/champ/feedback2.o
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -Icontrib/champ -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/champ/list.c -o build/temp.linux-x86_64-cpython-39/contrib/champ/list.o
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -Icontrib/champ -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/champ/os_memory.c -o build/temp.linux-x86_64-cpython-39/contrib/champ/os_memory.o
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -Icontrib/champ -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/champ/sort.c -o build/temp.linux-x86_64-cpython-39/contrib/champ/sort.o
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -Icontrib/champ -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/champ/strblock.c -o build/temp.linux-x86_64-cpython-39/contrib/champ/strblock.o
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -Icontrib/champ -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c -MMD contrib/champ/vla.c -o build/temp.linux-x86_64-cpython-39/contrib/champ/vla.o
contrib/champ/os_memory.c: In function ‘OSMemoryZero’:
contrib/champ/os_memory.c:55:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
   55 |   while(count&&(((int)p)&mask)) {
      |                  ^
contrib/champ/os_memory.c: In function ‘OSMemoryHashAdd’:
contrib/champ/os_memory.c:137:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  137 |   hash=(int)rec;
      |        ^
contrib/champ/os_memory.c: In function ‘OSMemoryHashRemove’:
contrib/champ/os_memory.c:150:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  150 |   hash=(int)rec;
      |        ^
gcc -pthread -shared -Wl,-rpath=/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/lib -fno-semantic-interposition build/temp.linux-x86_64-cpython-39/contrib/champ/champ.o build/temp.linux-x86_64-cpython-39/contrib/champ/champ_module.o build/temp.linux-x86_64-cpython-39/contrib/champ/chiral.o build/temp.linux-x86_64-cpython-39/contrib/champ/err2.o build/temp.linux-x86_64-cpython-39/contrib/champ/feedback2.o build/temp.linux-x86_64-cpython-39/contrib/champ/list.o build/temp.linux-x86_64-cpython-39/contrib/champ/os_memory.o build/temp.linux-x86_64-cpython-39/contrib/champ/sort.o build/temp.linux-x86_64-cpython-39/contrib/champ/strblock.o build/temp.linux-x86_64-cpython-39/contrib/champ/vla.o -L/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/lib -o build/lib.linux-x86_64-cpython-39/chempy/champ/_champ.cpython-39-x86_64-linux-gnu.so
phase `build' succeeded after 61.2 seconds
starting phase `install'
numpy not available
running install
running build
running build_py
warning: build_py_pymol: byte-compiling is disabled, skipping.

running build_ext
running install_lib
creating /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0
creating /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib
creating /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9
creating /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages
creating /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages/pymol2
creating /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages/pymol
creating /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages/pymol/wizard
creating /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages/pymol/stereochemistry
creating /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages/pymol/plugins
creating /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages/pymol/Qt
creating /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages/pmg_tk
creating /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages/pmg_tk/startup
creating /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages/pmg_tk/skins
creating /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages/pmg_tk/skins/normal
creating /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages/pmg_tk/skins/demo
creating /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages/pmg_qt
creating /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages/pmg_qt/syntax
creating /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages/pmg_qt/forms
creating /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages/chempy
creating /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages/chempy/tinker
creating /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages/chempy/mmtf
creating /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages/chempy/fragments
creating /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages/chempy/fast
creating /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages/chempy/champ
creating /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages/chempy/bmin
warning: install_lib: byte-compiling is disabled, skipping.

running install_egg_info
running egg_info
creating pymol.egg-info
writing manifest file 'pymol.egg-info/SOURCES.txt'
/gnu/store/7my837qpak6w6vk8ifd99d24kmgjyp61-python-setuptools-64.0.3/lib/python3.9/site-packages/setuptools/command/egg_info.py:643: SetuptoolsDeprecationWarning: Custom 'build_py' does not implement 'get_data_files_without_manifest'.
Please extend command classes from setuptools instead of distutils.
  warnings.warn(
writing manifest file 'pymol.egg-info/SOURCES.txt'
Copying pymol.egg-info to /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages/pymol-2.5.0-py3.9.egg-info
creating /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages/pymol/pymol_path
copying LICENSE -> /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages/pymol/pymol_path
copying data -> /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages/pymol/pymol_path/data
copying test -> /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages/pymol/pymol_path/test
copying examples -> /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages/pymol/pymol_path/examples
creating /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/bin
phase `install' succeeded after 0.7 seconds
starting phase `add-install-to-pythonpath'
phase `add-install-to-pythonpath' succeeded after 0.0 seconds
starting phase `add-install-to-path'
phase `add-install-to-path' succeeded after 0.0 seconds
starting phase `wrap'
find-files: /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/sbin: No such file or directory
phase `wrap' succeeded after 0.0 seconds
starting phase `check'
running "python setup.py" with command "test" and parameters ()
numpy not available
running test
WARNING: Testing via this command is deprecated and will be removed in a future version. Users looking for a generic test entry point independent of test runner are encouraged to use tox.
running egg_info
/gnu/store/7my837qpak6w6vk8ifd99d24kmgjyp61-python-setuptools-64.0.3/lib/python3.9/site-packages/setuptools/command/egg_info.py:643: SetuptoolsDeprecationWarning: Custom 'build_py' does not implement 'get_data_files_without_manifest'.
Please extend command classes from setuptools instead of distutils.
  warnings.warn(
writing manifest file 'pymol.egg-info/SOURCES.txt'
running build_ext
g++ -pthread -std=c++11 -shared -Wl,-rpath=/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/lib -fno-semantic-interposition build/temp.linux-x86_64-cpython-39/build/generated/ShaderText.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-x86_64-cpython-39/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o 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build/temp.linux-x86_64-cpython-39/layer3/MovieScene.o build/temp.linux-x86_64-cpython-39/layer3/PlugIOManager.o build/temp.linux-x86_64-cpython-39/layer3/RingFinder.o build/temp.linux-x86_64-cpython-39/layer3/Seeker.o build/temp.linux-x86_64-cpython-39/layer3/Selector.o build/temp.linux-x86_64-cpython-39/layer3/SelectorTmp.o build/temp.linux-x86_64-cpython-39/layer3/SpecRec.o build/temp.linux-x86_64-cpython-39/layer3/SpecRecSpecial.o build/temp.linux-x86_64-cpython-39/layer4/Cmd.o build/temp.linux-x86_64-cpython-39/layer4/Menu.o build/temp.linux-x86_64-cpython-39/layer4/PopUp.o build/temp.linux-x86_64-cpython-39/layer5/PyMOL.o build/temp.linux-x86_64-cpython-39/layer5/TestPyMOL.o build/temp.linux-x86_64-cpython-39/layer5/main.o build/temp.linux-x86_64-cpython-39/ov/src/OVContext.o build/temp.linux-x86_64-cpython-39/ov/src/OVHeap.o build/temp.linux-x86_64-cpython-39/ov/src/OVHeapArray.o build/temp.linux-x86_64-cpython-39/ov/src/OVLexicon.o build/temp.linux-x86_64-cpython-39/ov/src/OVOneToAny.o build/temp.linux-x86_64-cpython-39/ov/src/OVOneToOne.o build/temp.linux-x86_64-cpython-39/ov/src/OVRandom.o build/temp.linux-x86_64-cpython-39/ov/src/ov_utility.o -L/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/lib -lpng -lfreetype -lxml2 -lGL -lGLEW -lnetcdf -o /tmp/guix-build-python-pymol-2.5.0.drv-0/source/modules/pymol/_cmd.cpython-39-x86_64-linux-gnu.so -fopenmp
gcc -pthread -shared -Wl,-rpath=/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/lib -fno-semantic-interposition build/temp.linux-x86_64-cpython-39/contrib/champ/champ.o build/temp.linux-x86_64-cpython-39/contrib/champ/champ_module.o build/temp.linux-x86_64-cpython-39/contrib/champ/chiral.o build/temp.linux-x86_64-cpython-39/contrib/champ/err2.o build/temp.linux-x86_64-cpython-39/contrib/champ/feedback2.o build/temp.linux-x86_64-cpython-39/contrib/champ/list.o build/temp.linux-x86_64-cpython-39/contrib/champ/os_memory.o build/temp.linux-x86_64-cpython-39/contrib/champ/sort.o build/temp.linux-x86_64-cpython-39/contrib/champ/strblock.o build/temp.linux-x86_64-cpython-39/contrib/champ/vla.o -L/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/lib -o /tmp/guix-build-python-pymol-2.5.0.drv-0/source/modules/chempy/champ/_champ.cpython-39-x86_64-linux-gnu.so

----------------------------------------------------------------------
Ran 0 tests in 0.000s

OK
phase `check' succeeded after 4.0 seconds
starting phase `sanity-check'
validating 'pymol' /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib/python3.9/site-packages
...checking requirements: OK
...trying to load module chempy: OK
...trying to load module pmg_qt: OK
...trying to load module pmg_tk: OK
...trying to load module pymol: OK
...trying to load module pymol2: OK
phase `sanity-check' succeeded after 0.7 seconds
starting phase `patch-shebangs'
patch-shebang: /gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/bin/.pymol-real: changing `/bin/sh' to `/gnu/store/4y5m9lb8k3qkb1y9m02sw9w9a6hacd16-bash-minimal-5.1.8/bin/sh'
phase `patch-shebangs' succeeded after 0.0 seconds
starting phase `rename-pth-file'
phase `rename-pth-file' succeeded after 0.0 seconds
starting phase `strip'
stripping binaries in "/gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib" with "strip" and flags ("--strip-unneeded" "--enable-deterministic-archives")
stripping binaries in "/gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/bin" with "strip" and flags ("--strip-unneeded" "--enable-deterministic-archives")
phase `strip' succeeded after 0.2 seconds
starting phase `validate-runpath'
validating RUNPATH of 2 binaries in "/gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/lib"...
validating RUNPATH of 0 binaries in "/gnu/store/rbycwj75ridhwb6mlyiiwi91cjg6p7vv-python-pymol-2.5.0/bin"...
phase `validate-runpath' succeeded after 0.1 seconds
starting phase `validate-documentation-location'
phase `validate-documentation-location' succeeded after 0.0 seconds
starting phase `delete-info-dir-file'
phase `delete-info-dir-file' succeeded after 0.0 seconds
starting phase `patch-dot-desktop-files'
phase `patch-dot-desktop-files' succeeded after 0.0 seconds
starting phase `make-dynamic-linker-cache'
phase `make-dynamic-linker-cache' succeeded after 0.0 seconds
starting phase `install-license-files'
installing 1 license files from '.'
phase `install-license-files' succeeded after 0.0 seconds
starting phase `reset-gzip-timestamps'
phase `reset-gzip-timestamps' succeeded after 0.0 seconds
starting phase `compress-documentation'
phase `compress-documentation' succeeded after 0.0 seconds