starting phase `set-SOURCE-DATE-EPOCH' phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds starting phase `set-paths' environment variable `PATH' set to `/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/bin:/gnu/store/b0hyi9wdh5fyy16d6xpmi8amk2pix1ll-pandoc-2.14.0.3/bin:/gnu/store/99c25918hl9pihix8hparmc96q6zrpwy-tar-1.34/bin:/gnu/store/l0yga4lrwwf74rz7fb0dadglg27ajpsx-gzip-1.10/bin:/gnu/store/ihakfb51zdgjz3v9nkj0ja9zk9ng8xzl-bzip2-1.0.8/bin:/gnu/store/fk24dx8qz1b5smnc4ljfw25xn7yjps0q-xz-5.2.5/bin:/gnu/store/vl1b3nq6gijpzbl03zq92m5dwgs17nik-file-5.39/bin:/gnu/store/h0rx6y95zin61fp5wlyjly4g9j2hma18-diffutils-3.8/bin:/gnu/store/7j8j7m0kgb7kv2fc18qvrdj7gs3jc4mx-patch-2.7.6/bin:/gnu/store/x4yglk9pn2s2ixl1b4lj151bd2yvlgww-findutils-4.8.0/bin:/gnu/store/vzq0il5z2d6ksllb525m9xaqzv829g3k-gawk-5.1.0/bin:/gnu/store/cnwr7widbi6470kfyb13krx46kz5anmy-sed-4.8/bin:/gnu/store/bx47clwnxn51m7jdwfimz4lw2fh8g21v-grep-3.6/bin:/gnu/store/9a0cjh929maqvkxn3inv6jqbxn72fkx0-coreutils-8.32/bin:/gnu/store/dhx00nrv9r52f6xivg0xa4iihpl9awyk-make-4.3/bin:/gnu/store/7s2zlc4r9wqvlh9x2gqmzm4lnmbsdzmn-bash-minimal-5.1.8/bin:/gnu/store/4bzvr16pyax9224v9r72rqxswj9931sb-ld-wrapper-0/bin:/gnu/store/v4a7zw8w52v64kw5781ypa8gjwd098jz-binutils-2.37/bin:/gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/bin:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/bin:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/sbin' environment variable `R_LIBS_SITE' set to `/gnu/store/8q9dsp5fbcl0vwi4f231s7bz89p2h844-r-knitr-1.39/site-library/:/gnu/store/sqwcqbgl3kb41kap7v3ys5j7gmcg3y4p-r-checkmate-2.1.0/site-library/:/gnu/store/zr1r27n3qwprm6z5k96vn48pwbwkc3cp-r-matrixstats-0.62.0/site-library/:/gnu/store/gncaf9nlzjp7z6j7rjnhmpi3id7f3d2z-r-yaml-2.3.5/site-library/:/gnu/store/yhb7aqvv6q7niskk8abkfm6c49l2jwzd-r-xfun-0.31/site-library/:/gnu/store/iyp7hrr5188mrdhahs3irq3i74zlyndn-r-stringr-1.4.0/site-library/:/gnu/store/ig10kl87xzcjhzw3kv2w4ychf42yp19c-r-highr-0.9/site-library/:/gnu/store/ds1cffn0c2xgihll60bqr1kgnnd61ixy-r-evaluate-0.15/site-library/:/gnu/store/mdgzyd8p5n00i38la8pnwk3bhcn03xwc-r-backports-1.4.1/site-library/:/gnu/store/kdy7lp6f2v7jzg1w6mp9rcn1n8azfg7g-r-stringi-1.7.6/site-library/:/gnu/store/wg7w9ix2cjgsx2c5skx8pij7mjifi4w8-r-magrittr-2.0.3/site-library/:/gnu/store/1n4f86cwnddvq0dmcqp9y6ak1mdk9wf1-r-glue-1.6.2/site-library/' environment variable `BASH_LOADABLES_PATH' unset environment variable `C_INCLUDE_PATH' set to `/gnu/store/ihakfb51zdgjz3v9nkj0ja9zk9ng8xzl-bzip2-1.0.8/include:/gnu/store/fk24dx8qz1b5smnc4ljfw25xn7yjps0q-xz-5.2.5/include:/gnu/store/vl1b3nq6gijpzbl03zq92m5dwgs17nik-file-5.39/include:/gnu/store/vzq0il5z2d6ksllb525m9xaqzv829g3k-gawk-5.1.0/include:/gnu/store/dhx00nrv9r52f6xivg0xa4iihpl9awyk-make-4.3/include:/gnu/store/v4a7zw8w52v64kw5781ypa8gjwd098jz-binutils-2.37/include:/gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/include:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/include:/gnu/store/wsx4kz1gh6cpdhx393frhqknmswbggq8-linux-libre-headers-5.10.35/include' environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/ihakfb51zdgjz3v9nkj0ja9zk9ng8xzl-bzip2-1.0.8/include:/gnu/store/fk24dx8qz1b5smnc4ljfw25xn7yjps0q-xz-5.2.5/include:/gnu/store/vl1b3nq6gijpzbl03zq92m5dwgs17nik-file-5.39/include:/gnu/store/vzq0il5z2d6ksllb525m9xaqzv829g3k-gawk-5.1.0/include:/gnu/store/dhx00nrv9r52f6xivg0xa4iihpl9awyk-make-4.3/include:/gnu/store/v4a7zw8w52v64kw5781ypa8gjwd098jz-binutils-2.37/include:/gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/include/c++:/gnu/store/v5xfd4vy1lvqikdl1rzs8aklgsnqwd26-gcc-10.3.0/include:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/include:/gnu/store/wsx4kz1gh6cpdhx393frhqknmswbggq8-linux-libre-headers-5.10.35/include' environment variable `LIBRARY_PATH' set to `/gnu/store/j3das66pbpfly7gxxb2051h73yj4wkab-r-minimal-4.2.1/lib:/gnu/store/ihakfb51zdgjz3v9nkj0ja9zk9ng8xzl-bzip2-1.0.8/lib:/gnu/store/fk24dx8qz1b5smnc4ljfw25xn7yjps0q-xz-5.2.5/lib:/gnu/store/vl1b3nq6gijpzbl03zq92m5dwgs17nik-file-5.39/lib:/gnu/store/vzq0il5z2d6ksllb525m9xaqzv829g3k-gawk-5.1.0/lib:/gnu/store/v4a7zw8w52v64kw5781ypa8gjwd098jz-binutils-2.37/lib:/gnu/store/0iapawfss4xnxls622g23qpk4mwb9ihp-glibc-2.33/lib:/gnu/store/1s4k8h3h1ka9za4yzg0dfjnlhab5k14p-glibc-2.33-static/lib:/gnu/store/6p5m4cv8psfzy5xn5yhvhmjl261wg34m-glibc-utf8-locales-2.33/lib' environment variable `GUIX_LOCPATH' set to `/gnu/store/6p5m4cv8psfzy5xn5yhvhmjl261wg34m-glibc-utf8-locales-2.33/lib/locale' phase `set-paths' succeeded after 0.0 seconds starting phase `install-locale' using 'en_US.utf8' locale for category "LC_ALL" phase `install-locale' succeeded after 0.0 seconds starting phase `unpack' loo/ loo/NAMESPACE loo/data/ loo/data/milk.rda loo/data/Kline.rda loo/man/ loo/man/loo_moment_match.Rd loo/man/elpd.Rd loo/man/old-extractors.Rd loo/man/gpdfit.Rd loo/man/importance_sampling.array.Rd loo/man/ap_psis.Rd loo/man/nlist.Rd loo/man/parallel_psis_list.Rd loo/man/sis.Rd loo/man/loo-glossary.Rd loo/man/loo_moment_match_split.Rd loo/man/nobs.psis_loo_ss.Rd loo/man/pareto-k-diagnostic.Rd loo/man/loo_subsample.Rd loo/man/print_dims.Rd loo/man/E_loo.Rd loo/man/example_loglik_array.Rd loo/man/loo-package.Rd loo/man/weights.importance_sampling.Rd loo/man/waic.Rd loo/man/tis.Rd loo/man/obs_idx.Rd loo/man/dot-compute_point_estimate.Rd loo/man/importance_sampling.matrix.Rd loo/man/loo_compare.Rd loo/man/print.loo.Rd loo/man/loo.Rd loo/man/importance_sampling.Rd loo/man/figures/ loo/man/figures/stanlogo.png loo/man/dot-thin_draws.Rd loo/man/update.psis_loo_ss.Rd loo/man/psislw.Rd loo/man/kfold-helpers.Rd loo/man/importance_sampling.default.Rd loo/man/find_model_names.Rd loo/man/loo-datasets.Rd loo/man/kfold-generic.Rd loo/man/relative_eff.Rd loo/man/loo_approximate_posterior.Rd loo/man/dot-ndraws.Rd loo/man/psis.Rd loo/man/extract_log_lik.Rd loo/man/loo_model_weights.Rd loo/man/compare.Rd loo/man/psis_approximate_posterior.Rd loo/DESCRIPTION loo/build/ loo/build/vignette.rds loo/tests/ loo/tests/testthat/ loo/tests/testthat/test_relative_eff.R loo/tests/testthat/normal_reg_waic_test_example2.rda loo/tests/testthat/test_loo_approximate_posterior.R loo/tests/testthat/test_kfold_helpers.R loo/tests/testthat/test_psislw.R loo/tests/testthat/test_loo_subsampling.R loo/tests/testthat/loo_subsample_vignette.rda loo/tests/testthat/test_data_psis_approximate_posterior.rda loo/tests/testthat/test_psis.R loo/tests/testthat/test_deprecated_extractors.R loo/tests/testthat/test_extract_log_lik.R loo/tests/testthat/test_0_helpers.R loo/tests/testthat/test_psis_approximate_posterior.R loo/tests/testthat/test_E_loo.R loo/tests/testthat/test_compare.R loo/tests/testthat/test_radon_laplace_loo.rda loo/tests/testthat/reference-results/ loo/tests/testthat/reference-results/gpdfit_old.rds loo/tests/testthat/reference-results/moment_match_loo_Stan_1.rds loo/tests/testthat/reference-results/moment_match_loo_3.rds loo/tests/testthat/reference-results/mcse_loo.rds loo/tests/testthat/reference-results/loo.rds loo/tests/testthat/reference-results/E_loo_matrix_var.rds loo/tests/testthat/reference-results/moment_match_var_and_cov.rds loo/tests/testthat/reference-results/loo_compare_two_models.rds loo/tests/testthat/reference-results/E_loo_default_var.rds loo/tests/testthat/reference-results/psis.rds loo/tests/testthat/reference-results/E_loo_default_quantile_10_50_90.rds loo/tests/testthat/reference-results/E_loo_default_quantile_50.rds loo/tests/testthat/reference-results/compare_two_models.rds loo/tests/testthat/reference-results/model_weights_stacking.rds loo/tests/testthat/reference-results/relative_eff.rds loo/tests/testthat/reference-results/moment_match_loo_1.rds loo/tests/testthat/reference-results/E_loo_matrix_quantile_10_90.rds loo/tests/testthat/reference-results/gpdfit.rds loo/tests/testthat/reference-results/elpd.rds loo/tests/testthat/reference-results/moment_match_loo_2.rds loo/tests/testthat/reference-results/E_loo_matrix_quantile_50.rds loo/tests/testthat/reference-results/E_loo_default_mean.rds loo/tests/testthat/reference-results/gpdfit_default_grid.rds loo/tests/testthat/reference-results/loo_compare_three_models.rds loo/tests/testthat/reference-results/compare_three_models.rds loo/tests/testthat/reference-results/waic.rds loo/tests/testthat/reference-results/E_loo_matrix_mean.rds loo/tests/testthat/reference-results/model_weights_pseudobma.rds loo/tests/testthat/reference-results/moment_match_split.rds loo/tests/testthat/test_loo_moment_matching.R loo/tests/testthat/test_loo_and_waic.R loo/tests/testthat/function_method_stuff.R loo/tests/testthat/test_tisis.R loo/tests/testthat/test_model_weighting.R loo/tests/testthat/test_print_plot.R loo/tests/testthat/test_gpdfit.R loo/tests/testthat/normal_reg_waic_test_example.rda loo/tests/testthat.R loo/vignettes/ loo/vignettes/loo2-weights.Rmd loo/vignettes/loo2-lfo.Rmd loo/vignettes/loo2-with-rstan.Rmd loo/vignettes/loo2-example.Rmd loo/vignettes/loo2-moment-matching.Rmd loo/vignettes/loo2-non-factorized.Rmd loo/vignettes/loo2-large-data.Rmd loo/vignettes/children/ loo/vignettes/children/SETTINGS-knitr.txt loo/vignettes/children/SEE-ONLINE.txt loo/vignettes/loo2-elpd.Rmd loo/R/ loo/R/sis.R loo/R/loo_moment_matching.R loo/R/print.R loo/R/E_loo.R loo/R/sysdata.rda loo/R/waic.R loo/R/loo.R loo/R/zzz.R loo/R/loo_compare.psis_loo_ss_list.R loo/R/effective_sample_sizes.R loo/R/helpers.R loo/R/gpdfit.R loo/R/loo-package.R loo/R/loo-glossary.R loo/R/psis_approximate_posterior.R loo/R/psis.R loo/R/extract_log_lik.R loo/R/loo_approximate_posterior.R loo/R/diagnostics.R loo/R/kfold-helpers.R loo/R/split_moment_matching.R loo/R/loo_subsample.R loo/R/loo_compare.R loo/R/tis.R loo/R/importance_sampling.R loo/R/example_log_lik_array.R loo/R/loo_model_weights.R loo/R/kfold-generic.R loo/R/compare.R loo/R/elpd.R loo/R/psislw.R loo/R/datasets.R loo/NEWS.md loo/MD5 loo/inst/ loo/inst/doc/ loo/inst/doc/loo2-elpd.html loo/inst/doc/loo2-weights.Rmd loo/inst/doc/loo2-elpd.R loo/inst/doc/loo2-with-rstan.html loo/inst/doc/loo2-lfo.html loo/inst/doc/loo2-weights.R loo/inst/doc/loo2-large-data.R loo/inst/doc/loo2-lfo.Rmd loo/inst/doc/loo2-with-rstan.Rmd loo/inst/doc/loo2-example.html loo/inst/doc/loo2-example.Rmd loo/inst/doc/loo2-moment-matching.Rmd loo/inst/doc/loo2-moment-matching.html loo/inst/doc/loo2-moment-matching.R loo/inst/doc/loo2-non-factorized.Rmd loo/inst/doc/loo2-weights.html loo/inst/doc/loo2-example.R loo/inst/doc/loo2-large-data.Rmd loo/inst/doc/loo2-non-factorized.html loo/inst/doc/loo2-elpd.Rmd loo/inst/doc/loo2-large-data.html loo/inst/doc/loo2-non-factorized.R loo/inst/doc/loo2-with-rstan.R loo/inst/doc/loo2-lfo.R loo/inst/CITATION phase `unpack' succeeded after 0.1 seconds starting phase `patch-usr-bin-file' phase `patch-usr-bin-file' succeeded after 0.0 seconds starting phase `patch-source-shebangs' phase `patch-source-shebangs' succeeded after 0.0 seconds starting phase `patch-generated-file-shebangs' phase `patch-generated-file-shebangs' succeeded after 0.0 seconds starting phase `install' Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory * installing *source* package ‘loo’ ... ** package ‘loo’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** tests ** byte-compile and prepare package for lazy loading Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory ** help *** installing help indices *** copying figures ** building package indices Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory ** installing vignettes ** testing if installed package can be loaded from temporary location Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory ** testing if installed package can be loaded from final location Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory ** testing if installed package keeps a record of temporary installation path * DONE (loo) phase `install' succeeded after 7.5 seconds starting phase `check' Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory Warning message: In normalizePath("~") : path[1]="/homeless-shelter": No such file or directory Testing examples for package ‘loo’ Running specific tests for package ‘loo’ Running ‘testthat.R’ phase `check' succeeded after 2.7 seconds starting phase `patch-shebangs' phase `patch-shebangs' succeeded after 0.0 seconds starting phase `strip' phase `strip' succeeded after 0.0 seconds starting phase `validate-runpath' phase `validate-runpath' succeeded after 0.0 seconds starting phase `validate-documentation-location' phase `validate-documentation-location' succeeded after 0.0 seconds starting phase `delete-info-dir-file' phase `delete-info-dir-file' succeeded after 0.0 seconds starting phase `patch-dot-desktop-files' phase `patch-dot-desktop-files' succeeded after 0.0 seconds starting phase `make-dynamic-linker-cache' phase `make-dynamic-linker-cache' succeeded after 0.0 seconds starting phase `install-license-files' installing 0 license files from '.' phase `install-license-files' succeeded after 0.0 seconds starting phase `reset-gzip-timestamps' phase `reset-gzip-timestamps' succeeded after 0.0 seconds starting phase `compress-documentation' phase `compress-documentation' succeeded after 0.0 seconds