starting phase `separate-from-pid1' build process now running as PID 18 phase `separate-from-pid1' succeeded after 0.0 seconds starting phase `set-SOURCE-DATE-EPOCH' phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds starting phase `set-paths' environment variable `PATH' set to `/gnu/store/32w5vl6nwv6hqyv5wd350q3am2lynql3-cmake-minimal-cross-3.24.2/bin:/gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/bin:/gnu/store/xk5y49ahzp2kdhn13c8yjvgx4zq14z8y-binutils-cross-i586-pc-gnu-2.41/bin:/gnu/store/j5zgzgsmbjgywr67r86h1n6s4qiabv5q-tar-1.34/bin:/gnu/store/0r2fx1lr1h2i3cl1x5fw4s4ly95qspya-gzip-1.13/bin:/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/bin:/gnu/store/544ga5n6nq8y2961ihigra6n6a0r99nn-file-5.45/bin:/gnu/store/swmflx2bmqpf0drm167pxfpgyr7ckcam-diffutils-3.10/bin:/gnu/store/4jhlsg65s1zx90gnnfmaax52i8prnl45-patch-2.7.6/bin:/gnu/store/b5c62i99dsfa5j0j3f8g2j1xdi6fih22-findutils-4.9.0/bin:/gnu/store/vrl2r0ps24k1a6yap2chjylv5rhbndvr-gawk-5.3.0/bin:/gnu/store/3f0fjq25n2kwcmi0zyrf216wa6g8xpjw-zstd-1.5.2/bin:/gnu/store/3i4fr8riqw9azh1p4mqggl5vdz23kyr8-sed-4.8/bin:/gnu/store/7k8b93779dqpwcg2qjdvnf4nl43jv7hf-grep-3.11/bin:/gnu/store/fbaw0sb21gv02qq7gs9wg5y5wlpdgzih-xz-5.4.5/bin:/gnu/store/7h0mnlwalw23j9jmvz5n1i5mqkgb4d06-coreutils-9.1/bin:/gnu/store/lc6r1mh0jlcwixjziiw1zsx1my478rv1-make-4.4.1/bin:/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin:/gnu/store/3k6lyifyg024lk3gncsgf2gzjzvc70gv-ld-wrapper-0/bin:/gnu/store/ylgkrq9j1gyfig2y66srmgsbyh9w20d9-binutils-2.41/bin:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/bin:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/bin:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/sbin' environment variable `CMAKE_PREFIX_PATH' set to `/gnu/store/hkr5qh2igha6frazpjqxkgcnr1xbkhpr-python-wrapper-3.10.7/:/gnu/store/015f3zsdql0avjakb00yzq83fw30rkn0-zlib-1.3/:/gnu/store/bkcnskrg036d6i12mvk4p8km5lgz4nac-python-3.10.7/:/gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/:/gnu/store/givfgmqlv453g6ix7nx1zh4d0gkkwy1g-glibc-cross-i586-pc-gnu-2.39/:/gnu/store/gmap2j6iavp5k2cz0dar7dax8hgimqn7-glibc-cross-i586-pc-gnu-2.39-static/:/gnu/store/ln43rq1pap6dzp59djzchk2yc0h8250v-hurd-core-headers-cross-i586-pc-gnu-0.9.git20240714/' environment variable `SSL_CERT_DIR' unset environment variable `SSL_CERT_FILE' unset environment variable `CROSS_LIBRARY_PATH' set to `/gnu/store/015f3zsdql0avjakb00yzq83fw30rkn0-zlib-1.3/lib:/gnu/store/bkcnskrg036d6i12mvk4p8km5lgz4nac-python-3.10.7/lib:/gnu/store/givfgmqlv453g6ix7nx1zh4d0gkkwy1g-glibc-cross-i586-pc-gnu-2.39/lib:/gnu/store/gmap2j6iavp5k2cz0dar7dax8hgimqn7-glibc-cross-i586-pc-gnu-2.39-static/lib:/gnu/store/ln43rq1pap6dzp59djzchk2yc0h8250v-hurd-core-headers-cross-i586-pc-gnu-0.9.git20240714/lib' environment variable `CROSS_C_INCLUDE_PATH' set to `/gnu/store/015f3zsdql0avjakb00yzq83fw30rkn0-zlib-1.3/include:/gnu/store/bkcnskrg036d6i12mvk4p8km5lgz4nac-python-3.10.7/include:/gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/include:/gnu/store/givfgmqlv453g6ix7nx1zh4d0gkkwy1g-glibc-cross-i586-pc-gnu-2.39/include:/gnu/store/ln43rq1pap6dzp59djzchk2yc0h8250v-hurd-core-headers-cross-i586-pc-gnu-0.9.git20240714/include' environment variable `CROSS_CPLUS_INCLUDE_PATH' set to `/gnu/store/015f3zsdql0avjakb00yzq83fw30rkn0-zlib-1.3/include:/gnu/store/bkcnskrg036d6i12mvk4p8km5lgz4nac-python-3.10.7/include:/gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/include/c++:/gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/include:/gnu/store/givfgmqlv453g6ix7nx1zh4d0gkkwy1g-glibc-cross-i586-pc-gnu-2.39/include:/gnu/store/ln43rq1pap6dzp59djzchk2yc0h8250v-hurd-core-headers-cross-i586-pc-gnu-0.9.git20240714/include' environment variable `CROSS_OBJC_INCLUDE_PATH' set to `/gnu/store/015f3zsdql0avjakb00yzq83fw30rkn0-zlib-1.3/include:/gnu/store/bkcnskrg036d6i12mvk4p8km5lgz4nac-python-3.10.7/include:/gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/include:/gnu/store/givfgmqlv453g6ix7nx1zh4d0gkkwy1g-glibc-cross-i586-pc-gnu-2.39/include:/gnu/store/ln43rq1pap6dzp59djzchk2yc0h8250v-hurd-core-headers-cross-i586-pc-gnu-0.9.git20240714/include' environment variable `CROSS_OBJCPLUS_INCLUDE_PATH' set to `/gnu/store/015f3zsdql0avjakb00yzq83fw30rkn0-zlib-1.3/include:/gnu/store/bkcnskrg036d6i12mvk4p8km5lgz4nac-python-3.10.7/include:/gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/include:/gnu/store/givfgmqlv453g6ix7nx1zh4d0gkkwy1g-glibc-cross-i586-pc-gnu-2.39/include:/gnu/store/ln43rq1pap6dzp59djzchk2yc0h8250v-hurd-core-headers-cross-i586-pc-gnu-0.9.git20240714/include' environment variable `AWKPATH' unset environment variable `AWKLIBPATH' unset environment variable `BASH_LOADABLES_PATH' unset environment variable `C_INCLUDE_PATH' set to `/gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/include:/gnu/store/xk5y49ahzp2kdhn13c8yjvgx4zq14z8y-binutils-cross-i586-pc-gnu-2.41/include:/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/include:/gnu/store/544ga5n6nq8y2961ihigra6n6a0r99nn-file-5.45/include:/gnu/store/vrl2r0ps24k1a6yap2chjylv5rhbndvr-gawk-5.3.0/include:/gnu/store/fbaw0sb21gv02qq7gs9wg5y5wlpdgzih-xz-5.4.5/include:/gnu/store/lc6r1mh0jlcwixjziiw1zsx1my478rv1-make-4.4.1/include:/gnu/store/ylgkrq9j1gyfig2y66srmgsbyh9w20d9-binutils-2.41/include:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/include:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/include:/gnu/store/svghsdn1x3fyili8ij791nn25zba9bpf-linux-libre-headers-5.15.49/include' environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/include/c++:/gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/include:/gnu/store/xk5y49ahzp2kdhn13c8yjvgx4zq14z8y-binutils-cross-i586-pc-gnu-2.41/include:/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/include:/gnu/store/544ga5n6nq8y2961ihigra6n6a0r99nn-file-5.45/include:/gnu/store/vrl2r0ps24k1a6yap2chjylv5rhbndvr-gawk-5.3.0/include:/gnu/store/fbaw0sb21gv02qq7gs9wg5y5wlpdgzih-xz-5.4.5/include:/gnu/store/lc6r1mh0jlcwixjziiw1zsx1my478rv1-make-4.4.1/include:/gnu/store/ylgkrq9j1gyfig2y66srmgsbyh9w20d9-binutils-2.41/include:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/include/c++:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/include:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/include:/gnu/store/svghsdn1x3fyili8ij791nn25zba9bpf-linux-libre-headers-5.15.49/include' environment variable `OBJC_INCLUDE_PATH' set to `/gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/include:/gnu/store/xk5y49ahzp2kdhn13c8yjvgx4zq14z8y-binutils-cross-i586-pc-gnu-2.41/include:/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/include:/gnu/store/544ga5n6nq8y2961ihigra6n6a0r99nn-file-5.45/include:/gnu/store/vrl2r0ps24k1a6yap2chjylv5rhbndvr-gawk-5.3.0/include:/gnu/store/fbaw0sb21gv02qq7gs9wg5y5wlpdgzih-xz-5.4.5/include:/gnu/store/lc6r1mh0jlcwixjziiw1zsx1my478rv1-make-4.4.1/include:/gnu/store/ylgkrq9j1gyfig2y66srmgsbyh9w20d9-binutils-2.41/include:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/include:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/include:/gnu/store/svghsdn1x3fyili8ij791nn25zba9bpf-linux-libre-headers-5.15.49/include' environment variable `OBJCPLUS_INCLUDE_PATH' set to `/gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/include/c++:/gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/include:/gnu/store/xk5y49ahzp2kdhn13c8yjvgx4zq14z8y-binutils-cross-i586-pc-gnu-2.41/include:/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/include:/gnu/store/544ga5n6nq8y2961ihigra6n6a0r99nn-file-5.45/include:/gnu/store/vrl2r0ps24k1a6yap2chjylv5rhbndvr-gawk-5.3.0/include:/gnu/store/fbaw0sb21gv02qq7gs9wg5y5wlpdgzih-xz-5.4.5/include:/gnu/store/lc6r1mh0jlcwixjziiw1zsx1my478rv1-make-4.4.1/include:/gnu/store/ylgkrq9j1gyfig2y66srmgsbyh9w20d9-binutils-2.41/include:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/include/c++:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/include:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/include:/gnu/store/svghsdn1x3fyili8ij791nn25zba9bpf-linux-libre-headers-5.15.49/include' environment variable `LIBRARY_PATH' set to `/gnu/store/xk5y49ahzp2kdhn13c8yjvgx4zq14z8y-binutils-cross-i586-pc-gnu-2.41/lib:/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/lib:/gnu/store/544ga5n6nq8y2961ihigra6n6a0r99nn-file-5.45/lib:/gnu/store/vrl2r0ps24k1a6yap2chjylv5rhbndvr-gawk-5.3.0/lib:/gnu/store/fbaw0sb21gv02qq7gs9wg5y5wlpdgzih-xz-5.4.5/lib:/gnu/store/ylgkrq9j1gyfig2y66srmgsbyh9w20d9-binutils-2.41/lib:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/lib:/gnu/store/vqdiyyqbrv4akp68pfya4j6m3pdbnhca-glibc-2.39-static/lib' environment variable `GUIX_LOCPATH' set to `/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/lib/locale' environment variable `TZDIR' unset environment variable `GUIX_PYTHONPATH' unset environment variable `PYTHONTZPATH' unset phase `set-paths' succeeded after 0.0 seconds starting phase `install-locale' using 'C.UTF-8' locale for category "LC_ALL" phase `install-locale' succeeded after 0.0 seconds starting phase `unpack' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/.clang-format' -> `./.clang-format' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/.gitignore' -> `./.gitignore' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/.travis.yml' -> `./.travis.yml' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/CHANGELOG.md' -> `./CHANGELOG.md' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/CMakeLists.txt' -> `./CMakeLists.txt' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/Dockerfile' -> `./Dockerfile' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/LICENSE' -> `./LICENSE' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/README.md' -> `./README.md' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/azure-pipelines.yml' -> `./azure-pipelines.yml' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/codecov.yml' -> `./codecov.yml' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/test_data/empty.fa' -> `./test_data/empty.fa' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/test_data/generate_random_fasta.py' -> `./test_data/generate_random_fasta.py' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/test_data/loop.fa' -> `./test_data/loop.fa' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/test_data/r1.il.fa.gz' -> `./test_data/r1.il.fa.gz' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/test_data/r2.il.fa.bz2' -> `./test_data/r2.il.fa.bz2' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/test_data/r3_1.fa' -> `./test_data/r3_1.fa' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/test_data/r3_2.fa' -> `./test_data/r3_2.fa' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/test_data/r4.fa' -> `./test_data/r4.fa' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/test_data/ref.fa' -> `./test_data/ref.fa' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/definitions.h' -> `./src/definitions.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/main.cpp' -> `./src/main.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/main_assemble.cpp' -> `./src/main_assemble.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/main_buildlib.cpp' -> `./src/main_buildlib.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/main_iterate.cpp' -> `./src/main_iterate.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/main_local_assemble.cpp' -> `./src/main_local_assemble.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/main_sdbg_build.cpp' -> `./src/main_sdbg_build.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/megahit' -> `./src/megahit' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/xxhash/xxh3.h' -> `./src/xxhash/xxh3.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/xxhash/xxhash.c' -> `./src/xxhash/xxhash.c' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/xxhash/xxhash.h' -> `./src/xxhash/xxhash.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/xxhash/xxhsum.c' -> `./src/xxhash/xxhsum.c' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/utils/atomic_wrapper.h' -> `./src/utils/atomic_wrapper.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/utils/buffered_reader.h' -> `./src/utils/buffered_reader.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/utils/cpu_dispatch.h' -> `./src/utils/cpu_dispatch.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/utils/histgram.h' -> `./src/utils/histgram.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/utils/mutex.h' -> `./src/utils/mutex.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/utils/options_description.cpp' -> `./src/utils/options_description.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/utils/options_description.h' -> `./src/utils/options_description.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/utils/utils.h' -> `./src/utils/utils.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/tools/contigs_to_fastg.cpp' -> `./src/tools/contigs_to_fastg.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/tools/filter_by_len.cpp' -> `./src/tools/filter_by_len.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/tools/read_stat.cpp' -> `./src/tools/read_stat.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sorting/base_engine.cpp' -> `./src/sorting/base_engine.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sorting/base_engine.h' -> `./src/sorting/base_engine.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sorting/edge_counter.h' -> `./src/sorting/edge_counter.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sorting/kmer_counter.cpp' -> `./src/sorting/kmer_counter.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sorting/kmer_counter.h' -> `./src/sorting/kmer_counter.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sorting/kmsort_selector.cpp' -> `./src/sorting/kmsort_selector.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sorting/kmsort_selector.h' -> `./src/sorting/kmsort_selector.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sorting/read_to_sdbg.h' -> `./src/sorting/read_to_sdbg.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sorting/read_to_sdbg_s1.cpp' -> `./src/sorting/read_to_sdbg_s1.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sorting/read_to_sdbg_s2.cpp' -> `./src/sorting/read_to_sdbg_s2.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sorting/seq_to_sdbg.cpp' -> `./src/sorting/seq_to_sdbg.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sorting/seq_to_sdbg.h' -> `./src/sorting/seq_to_sdbg.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sequence/copy_substr.h' -> `./src/sequence/copy_substr.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sequence/kmer.h' -> `./src/sequence/kmer.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sequence/kmer_plus.h' -> `./src/sequence/kmer_plus.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sequence/sequence_package.h' -> `./src/sequence/sequence_package.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sequence/io/async_sequence_reader.h' -> `./src/sequence/io/async_sequence_reader.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sequence/io/base_reader.h' -> `./src/sequence/io/base_reader.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sequence/io/binary_reader.h' -> `./src/sequence/io/binary_reader.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sequence/io/fastx_reader.cpp' -> `./src/sequence/io/fastx_reader.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sequence/io/fastx_reader.h' -> `./src/sequence/io/fastx_reader.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sequence/io/kseq.h' -> `./src/sequence/io/kseq.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sequence/io/paired_fastx_reader.cpp' -> `./src/sequence/io/paired_fastx_reader.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sequence/io/paired_fastx_reader.h' -> `./src/sequence/io/paired_fastx_reader.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sequence/io/sequence_lib.cpp' -> `./src/sequence/io/sequence_lib.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sequence/io/sequence_lib.h' -> `./src/sequence/io/sequence_lib.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sequence/io/edge/edge_io_meta.h' -> `./src/sequence/io/edge/edge_io_meta.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sequence/io/edge/edge_reader.h' -> `./src/sequence/io/edge/edge_reader.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sequence/io/edge/edge_writer.h' -> `./src/sequence/io/edge/edge_writer.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sequence/io/contig/contig_reader.h' -> `./src/sequence/io/contig/contig_reader.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sequence/io/contig/contig_writer.h' -> `./src/sequence/io/contig/contig_writer.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sdbg/sdbg.h' -> `./src/sdbg/sdbg.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sdbg/sdbg_def.h' -> `./src/sdbg/sdbg_def.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sdbg/sdbg_item.h' -> `./src/sdbg/sdbg_item.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sdbg/sdbg_meta.cpp' -> `./src/sdbg/sdbg_meta.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sdbg/sdbg_meta.h' -> `./src/sdbg/sdbg_meta.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sdbg/sdbg_raw_content.cpp' -> `./src/sdbg/sdbg_raw_content.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sdbg/sdbg_raw_content.h' -> `./src/sdbg/sdbg_raw_content.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sdbg/sdbg_writer.cpp' -> `./src/sdbg/sdbg_writer.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/sdbg/sdbg_writer.h' -> `./src/sdbg/sdbg_writer.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/pprintpp/charlist.hpp' -> `./src/pprintpp/charlist.hpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/pprintpp/pprintpp.hpp' -> `./src/pprintpp/pprintpp.hpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/pprintpp/stl_symbols.hpp' -> `./src/pprintpp/stl_symbols.hpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/pprintpp/typelist.hpp' -> `./src/pprintpp/typelist.hpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/parallel_hashmap/meminfo.h' -> `./src/parallel_hashmap/meminfo.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/parallel_hashmap/phmap.h' -> `./src/parallel_hashmap/phmap.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/parallel_hashmap/phmap_base.h' -> `./src/parallel_hashmap/phmap_base.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/parallel_hashmap/phmap_bits.h' -> `./src/parallel_hashmap/phmap_bits.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/parallel_hashmap/phmap_config.h' -> `./src/parallel_hashmap/phmap_config.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/parallel_hashmap/phmap_fwd_decl.h' -> `./src/parallel_hashmap/phmap_fwd_decl.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/parallel_hashmap/phmap_utils.h' -> `./src/parallel_hashmap/phmap_utils.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/localasm/hash_mapper.cpp' -> `./src/localasm/hash_mapper.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/localasm/hash_mapper.h' -> `./src/localasm/hash_mapper.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/localasm/local_assemble.cpp' -> `./src/localasm/local_assemble.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/localasm/local_assemble.h' -> `./src/localasm/local_assemble.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/localasm/mapping_result_collector.h' -> `./src/localasm/mapping_result_collector.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/kmlib/kmbit.h' -> `./src/kmlib/kmbit.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/kmlib/kmbitvector.h' -> `./src/kmlib/kmbitvector.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/kmlib/kmcompactvector.h' -> `./src/kmlib/kmcompactvector.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/kmlib/kmrns.h' -> `./src/kmlib/kmrns.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/kmlib/kmsort.h' -> `./src/kmlib/kmsort.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/kmlib/test_compactvector.cpp' -> `./src/kmlib/test_compactvector.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/kmlib/test_kmbit.cpp' -> `./src/kmlib/test_kmbit.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/iterate/contig_flank_index.h' -> `./src/iterate/contig_flank_index.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/iterate/kmer_collector.h' -> `./src/iterate/kmer_collector.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/idba/README' -> `./src/idba/README' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/idba/bit_edges.h' -> `./src/idba/bit_edges.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/idba/bit_operation.h' -> `./src/idba/bit_operation.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/idba/contig_builder.h' -> `./src/idba/contig_builder.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/idba/contig_graph.cpp' -> `./src/idba/contig_graph.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/idba/contig_graph.h' -> `./src/idba/contig_graph.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/idba/contig_graph_branch_group.cpp' -> `./src/idba/contig_graph_branch_group.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/idba/contig_graph_branch_group.h' -> `./src/idba/contig_graph_branch_group.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/idba/contig_graph_path.h' -> `./src/idba/contig_graph_path.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/idba/contig_graph_vertex.h' -> `./src/idba/contig_graph_vertex.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/idba/contig_info.h' -> `./src/idba/contig_info.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/idba/functional.h' -> `./src/idba/functional.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/idba/hash.h' -> `./src/idba/hash.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/idba/hash_graph.cpp' -> `./src/idba/hash_graph.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/idba/hash_graph.h' -> `./src/idba/hash_graph.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/idba/hash_graph_path.h' -> `./src/idba/hash_graph_path.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/idba/hash_graph_vertex.h' -> `./src/idba/hash_graph_vertex.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/idba/hash_table.h' -> `./src/idba/hash_table.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/idba/kmer.h' -> `./src/idba/kmer.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/idba/pool.h' -> `./src/idba/pool.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/idba/sequence.cpp' -> `./src/idba/sequence.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/idba/sequence.h' -> `./src/idba/sequence.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/idba/vertex_status.h' -> `./src/idba/vertex_status.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/assembly/all_algo.h' -> `./src/assembly/all_algo.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/assembly/bubble_remover.cpp' -> `./src/assembly/bubble_remover.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/assembly/bubble_remover.h' -> `./src/assembly/bubble_remover.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/assembly/contig_output.cpp' -> `./src/assembly/contig_output.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/assembly/contig_output.h' -> `./src/assembly/contig_output.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/assembly/contig_stat.h' -> `./src/assembly/contig_stat.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/assembly/low_depth_remover.cpp' -> `./src/assembly/low_depth_remover.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/assembly/low_depth_remover.h' -> `./src/assembly/low_depth_remover.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/assembly/sdbg_pruning.cpp' -> `./src/assembly/sdbg_pruning.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/assembly/sdbg_pruning.h' -> `./src/assembly/sdbg_pruning.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/assembly/tip_remover.cpp' -> `./src/assembly/tip_remover.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/assembly/tip_remover.h' -> `./src/assembly/tip_remover.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/assembly/unitig_graph.cpp' -> `./src/assembly/unitig_graph.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/assembly/unitig_graph.h' -> `./src/assembly/unitig_graph.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/assembly/unitig_graph_vertex.h' -> `./src/assembly/unitig_graph_vertex.h' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/assembly/weak_link_remover.cpp' -> `./src/assembly/weak_link_remover.cpp' `/gnu/store/9nf1k4gdk3pfh79wfsp4pi7lsihdqff7-megahit-1.2.9-checkout/src/assembly/weak_link_remover.h' -> `./src/assembly/weak_link_remover.h' phase `unpack' succeeded after 0.1 seconds starting phase `fix-tests' phase `fix-tests' succeeded after 0.0 seconds starting phase `patch-usr-bin-file' phase `patch-usr-bin-file' succeeded after 0.0 seconds starting phase `patch-source-shebangs' patch-shebang: ./src/megahit: warning: no binary for interpreter `python' found in $PATH patch-shebang: ./test_data/generate_random_fasta.py: warning: no binary for interpreter `python3' found in $PATH phase `patch-source-shebangs' succeeded after 0.0 seconds starting phase `configure' source directory: "/tmp/guix-build-megahit-1.2.9.drv-0/source" (relative from build: "../source") build directory: "/tmp/guix-build-megahit-1.2.9.drv-0/build" running 'cmake' with arguments ("../source" "-DCMAKE_BUILD_TYPE=RelWithDebInfo" "-DCMAKE_INSTALL_PREFIX=/gnu/store/88nvyi4gk2h3hjmq11zb7xs4a32dhdxq-megahit-1.2.9" "-DCMAKE_INSTALL_LIBDIR=lib" "-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE" "-DCMAKE_INSTALL_RPATH=/gnu/store/88nvyi4gk2h3hjmq11zb7xs4a32dhdxq-megahit-1.2.9/lib" "-DCMAKE_VERBOSE_MAKEFILE=ON" "-DCMAKE_C_COMPILER=i586-pc-gnu-gcc" "-DCMAKE_CXX_COMPILER=i586-pc-gnu-g++" "-DCMAKE_SYSTEM_NAME=GNU") CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/bin/i586-pc-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/bin/i586-pc-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /gnu/store/015f3zsdql0avjakb00yzq83fw30rkn0-zlib-1.3/lib/libz.so (found version "1.3.#define ZLIB_VERSION "1.3"") -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Build type: RelWithDebInfo: -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/tmp/guix-build-megahit-1.2.9.drv-0/source/src"' -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_INSTALL_LIBDIR -- Build files have been written to: /tmp/guix-build-megahit-1.2.9.drv-0/build phase `configure' succeeded after 3.7 seconds starting phase `patch-generated-file-shebangs' phase `patch-generated-file-shebangs' succeeded after 0.0 seconds starting phase `build' /gnu/store/32w5vl6nwv6hqyv5wd350q3am2lynql3-cmake-minimal-cross-3.24.2/bin/cmake -S/tmp/guix-build-megahit-1.2.9.drv-0/source -B/tmp/guix-build-megahit-1.2.9.drv-0/build --check-build-system CMakeFiles/Makefile.cmake 0 /gnu/store/32w5vl6nwv6hqyv5wd350q3am2lynql3-cmake-minimal-cross-3.24.2/bin/cmake -E cmake_progress_start 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/tmp/guix-build-megahit-1.2.9.drv-0/build /tmp/guix-build-megahit-1.2.9.drv-0/build /tmp/guix-build-megahit-1.2.9.drv-0/build/CMakeFiles/megahit_core_popcnt.dir/DependInfo.cmake --color= make[2]: Entering directory '/tmp/guix-build-megahit-1.2.9.drv-0/build' cd /tmp/guix-build-megahit-1.2.9.drv-0/build && /gnu/store/32w5vl6nwv6hqyv5wd350q3am2lynql3-cmake-minimal-cross-3.24.2/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-megahit-1.2.9.drv-0/source /tmp/guix-build-megahit-1.2.9.drv-0/source /tmp/guix-build-megahit-1.2.9.drv-0/build /tmp/guix-build-megahit-1.2.9.drv-0/build /tmp/guix-build-megahit-1.2.9.drv-0/build/CMakeFiles/megahit_core_no_hw_accel.dir/DependInfo.cmake --color= make[2]: Leaving directory '/tmp/guix-build-megahit-1.2.9.drv-0/build' make -f CMakeFiles/megahit_core.dir/build.make CMakeFiles/megahit_core.dir/build make[2]: Leaving directory '/tmp/guix-build-megahit-1.2.9.drv-0/build' make -f CMakeFiles/megahit_core_popcnt.dir/build.make 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-D__XROOT__='"/tmp/guix-build-megahit-1.2.9.drv-0/source/src"' -O2 -g -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o -c /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main.cpp /gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/bin/i586-pc-gnu-g++ -I/tmp/guix-build-megahit-1.2.9.drv-0/source/src -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/tmp/guix-build-megahit-1.2.9.drv-0/source/src"' -O2 -g -DNDEBUG -mpopcnt -std=gnu++11 -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/main_sdbg_build.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/main_sdbg_build.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/main_sdbg_build.cpp.o -c /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_sdbg_build.cpp /gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/bin/i586-pc-gnu-g++ -I/tmp/guix-build-megahit-1.2.9.drv-0/source/src -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/tmp/guix-build-megahit-1.2.9.drv-0/source/src"' -O2 -g -DNDEBUG -mbmi2 -DUSE_BMI2 -mpopcnt -std=gnu++11 -MD -MT CMakeFiles/megahit_core.dir/src/utils/options_description.cpp.o -MF CMakeFiles/megahit_core.dir/src/utils/options_description.cpp.o.d -o CMakeFiles/megahit_core.dir/src/utils/options_description.cpp.o -c /tmp/guix-build-megahit-1.2.9.drv-0/source/src/utils/options_description.cpp /gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/bin/i586-pc-gnu-g++ -I/tmp/guix-build-megahit-1.2.9.drv-0/source/src -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/tmp/guix-build-megahit-1.2.9.drv-0/source/src"' -O2 -g -DNDEBUG -mpopcnt -std=gnu++11 -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/main_assemble.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/main_assemble.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/main_assemble.cpp.o -c /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_assemble.cpp /gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/bin/i586-pc-gnu-g++ -I/tmp/guix-build-megahit-1.2.9.drv-0/source/src -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/tmp/guix-build-megahit-1.2.9.drv-0/source/src"' -O2 -g -DNDEBUG -mpopcnt -std=gnu++11 -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/main_local_assemble.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/main_local_assemble.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/main_local_assemble.cpp.o -c /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp /gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/bin/i586-pc-gnu-g++ -I/tmp/guix-build-megahit-1.2.9.drv-0/source/src -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/tmp/guix-build-megahit-1.2.9.drv-0/source/src"' -O2 -g -DNDEBUG -mpopcnt -std=gnu++11 -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/utils/options_description.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/utils/options_description.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/utils/options_description.cpp.o -c /tmp/guix-build-megahit-1.2.9.drv-0/source/src/utils/options_description.cpp cc1plus: warning: ‘-fprefetch-loop-arrays’ not supported for this target (try ‘-march’ switches) cc1plus: warning: ‘-fprefetch-loop-arrays’ not supported for this target (try ‘-march’ switches) cc1plus: warning: ‘-fprefetch-loop-arrays’ not supported for this target (try ‘-march’ switches) [ 14%] Built target megahit_toolkit cc1plus: warning: ‘-fprefetch-loop-arrays’ not supported for this target (try ‘-march’ switches) cc1plus: warning: ‘-fprefetch-loop-arrays’ not supported for this target (try ‘-march’ switches) cc1plus: warning: ‘-fprefetch-loop-arrays’ not supported for this target (try ‘-march’ switches) cc1plus: warning: ‘-fprefetch-loop-arrays’ not supported for this target (try ‘-march’ switches) cc1plus: warning: ‘-fprefetch-loop-arrays’ not supported for this target (try ‘-march’ switches) cc1plus: warning: ‘-fprefetch-loop-arrays’ not supported for this target (try ‘-march’ switches) cc1plus: warning: ‘-fprefetch-loop-arrays’ not supported for this target (try ‘-march’ switches) cc1plus: warning: ‘-fprefetch-loop-arrays’ not supported for this target (try ‘-march’ switches) cc1plus: warning: ‘-fprefetch-loop-arrays’ not supported for this target (try ‘-march’ switches) cc1plus: warning: ‘-fprefetch-loop-arrays’ not supported for this target (try ‘-march’ switches) cc1plus: warning: ‘-fprefetch-loop-arrays’ not supported for this target (try ‘-march’ switches) cc1plus: warning: ‘-fprefetch-loop-arrays’ not supported for this target (try ‘-march’ switches) [ 15%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/assembly/bubble_remover.cpp.o /gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/bin/i586-pc-gnu-g++ -I/tmp/guix-build-megahit-1.2.9.drv-0/source/src -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/tmp/guix-build-megahit-1.2.9.drv-0/source/src"' -O2 -g -DNDEBUG -mpopcnt -std=gnu++11 -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/bubble_remover.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/bubble_remover.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/bubble_remover.cpp.o -c /tmp/guix-build-megahit-1.2.9.drv-0/source/src/assembly/bubble_remover.cpp cc1plus: warning: ‘-fprefetch-loop-arrays’ not supported for this target (try ‘-march’ switches) In file included from /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:27: /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:31:3: error: ‘uint32_t’ does not name a type 31 | uint32_t kmin{11}; | ^~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:1:1: note: ‘uint32_t’ is defined in header ‘’; this is probably fixable by adding ‘#include ’ +++ |+#include 1 | /* /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:32:3: error: ‘uint32_t’ does not name a type 32 | uint32_t kmax{41}; | ^~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:32:3: note: ‘uint32_t’ is defined in header ‘’; this is probably fixable by adding ‘#include ’ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:33:3: error: ‘uint32_t’ does not name a type 33 | uint32_t step{6}; | ^~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:33:3: note: ‘uint32_t’ is defined in header ‘’; this is probably fixable by adding ‘#include ’ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:34:3: error: ‘uint32_t’ does not name a type 34 | uint32_t seed_kmer{31}; | ^~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:34:3: note: ‘uint32_t’ is defined in header ‘’; this is probably fixable by adding ‘#include ’ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:36:3: error: ‘uint32_t’ does not name a type 36 | uint32_t min_contig_len{200}; | ^~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:36:3: note: ‘uint32_t’ is defined in header ‘’; this is probably fixable by adding ‘#include ’ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:37:3: error: ‘uint32_t’ does not name a type 37 | uint32_t sparsity{8}; | ^~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:37:3: note: ‘uint32_t’ is defined in header ‘’; this is probably fixable by adding ‘#include ’ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:39:3: error: ‘uint32_t’ does not name a type 39 | uint32_t min_mapping_len{75}; | ^~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:39:3: note: ‘uint32_t’ is defined in header ‘’; this is probably fixable by adding ‘#include ’ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:41:3: error: ‘uint32_t’ does not name a type 41 | uint32_t num_threads{0}; | ^~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:41:3: note: ‘uint32_t’ is defined in header ‘’; this is probably fixable by adding ‘#include ’ In file included from /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:27: /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:31:3: error: ‘uint32_t’ does not name a type 31 | uint32_t kmin{11}; | ^~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:1:1: note: ‘uint32_t’ is defined in header ‘’; this is probably fixable by adding ‘#include ’ +++ |+#include 1 | /* /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:32:3: error: ‘uint32_t’ does not name a type 32 | uint32_t kmax{41}; | ^~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:32:3: note: ‘uint32_t’ is defined in header ‘’; this is probably fixable by adding ‘#include ’ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:33:3: error: ‘uint32_t’ does not name a type 33 | uint32_t step{6}; | ^~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:33:3: note: ‘uint32_t’ is defined in header ‘’; this is probably fixable by adding ‘#include ’ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:34:3: error: ‘uint32_t’ does not name a type 34 | uint32_t seed_kmer{31}; | ^~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:34:3: note: ‘uint32_t’ is defined in header ‘’; this is probably fixable by adding ‘#include ’ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:36:3: error: ‘uint32_t’ does not name a type 36 | uint32_t min_contig_len{200}; | ^~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:36:3: note: ‘uint32_t’ is defined in header ‘’; this is probably fixable by adding ‘#include ’ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:37:3: error: ‘uint32_t’ does not name a type 37 | uint32_t sparsity{8}; | ^~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:37:3: note: ‘uint32_t’ is defined in header ‘’; this is probably fixable by adding ‘#include ’ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:39:3: error: ‘uint32_t’ does not name a type 39 | uint32_t min_mapping_len{75}; | ^~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:39:3: note: ‘uint32_t’ is defined in header ‘’; this is probably fixable by adding ‘#include ’ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:41:3: error: ‘uint32_t’ does not name a type 41 | uint32_t num_threads{0}; | ^~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:41:3: note: ‘uint32_t’ is defined in header ‘’; this is probably fixable by adding ‘#include ’ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp: In function ‘LocalAsmOption {anonymous}::ParseLocalAsmOptions(int, char**)’: /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:40:34: error: ‘struct LocalAsmOption’ has no member named ‘kmin’ 40 | desc.AddOption("kmin", "", opt.kmin, ""); | ^~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:41:34: error: ‘struct LocalAsmOption’ has no member named ‘kmax’ 41 | desc.AddOption("kmax", "", opt.kmax, ""); | ^~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:42:34: error: ‘struct LocalAsmOption’ has no member named ‘step’ 42 | desc.AddOption("step", "", opt.step, ""); | ^~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:43:39: error: ‘struct LocalAsmOption’ has no member named ‘seed_kmer’ 43 | desc.AddOption("seed_kmer", "", opt.seed_kmer, | ^~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:45:44: error: ‘struct LocalAsmOption’ has no member named ‘min_contig_len’ 45 | desc.AddOption("min_contig_len", "", opt.min_contig_len, ""); | ^~~~~~~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:46:45: error: ‘struct LocalAsmOption’ has no member named ‘min_mapping_len’ 46 | desc.AddOption("min_mapping_len", "", opt.min_mapping_len, ""); | ^~~~~~~~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:47:38: error: ‘struct LocalAsmOption’ has no member named ‘sparsity’ 47 | desc.AddOption("sparsity", "", opt.sparsity, "sparsity of hash mapper"); | ^~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:50:42: error: ‘struct LocalAsmOption’ has no member named ‘num_threads’ 50 | desc.AddOption("num_threads", "t", opt.num_threads, ""); | ^~~~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:64:13: error: ‘struct LocalAsmOption’ has no member named ‘num_threads’ 64 | if (opt.num_threads == 0) { | ^~~~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:65:11: error: ‘struct LocalAsmOption’ has no member named ‘num_threads’ 65 | opt.num_threads = omp_get_max_threads(); | ^~~~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp: In function ‘int main_local(int, char**)’: /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:83:27: error: ‘struct LocalAsmOption’ has no member named ‘num_threads’ 83 | omp_set_num_threads(opt.num_threads); | ^~~~~~~~~~~ make[2]: *** [CMakeFiles/megahit_core_popcnt.dir/build.make:135: CMakeFiles/megahit_core_popcnt.dir/src/main_local_assemble.cpp.o] Error 1 make[2]: *** Waiting for unfinished jobs.... [ 16%] Building CXX object CMakeFiles/megahit_core.dir/src/assembly/bubble_remover.cpp.o /gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/bin/i586-pc-gnu-g++ -I/tmp/guix-build-megahit-1.2.9.drv-0/source/src -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/tmp/guix-build-megahit-1.2.9.drv-0/source/src"' -O2 -g -DNDEBUG -mbmi2 -DUSE_BMI2 -mpopcnt -std=gnu++11 -MD -MT CMakeFiles/megahit_core.dir/src/assembly/bubble_remover.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/bubble_remover.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/bubble_remover.cpp.o -c /tmp/guix-build-megahit-1.2.9.drv-0/source/src/assembly/bubble_remover.cpp cc1plus: warning: ‘-fprefetch-loop-arrays’ not supported for this target (try ‘-march’ switches) /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp: In function ‘LocalAsmOption {anonymous}::ParseLocalAsmOptions(int, char**)’: /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:40:34: error: ‘struct LocalAsmOption’ has no member named ‘kmin’ 40 | desc.AddOption("kmin", "", opt.kmin, ""); | ^~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:41:34: error: ‘struct LocalAsmOption’ has no member named ‘kmax’ 41 | desc.AddOption("kmax", "", opt.kmax, ""); | ^~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:42:34: error: ‘struct LocalAsmOption’ has no member named ‘step’ 42 | desc.AddOption("step", "", opt.step, ""); | ^~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:43:39: error: ‘struct LocalAsmOption’ has no member named ‘seed_kmer’ 43 | desc.AddOption("seed_kmer", "", opt.seed_kmer, | ^~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:45:44: error: ‘struct LocalAsmOption’ has no member named ‘min_contig_len’ 45 | desc.AddOption("min_contig_len", "", opt.min_contig_len, ""); | ^~~~~~~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:46:45: error: ‘struct LocalAsmOption’ has no member named ‘min_mapping_len’ 46 | desc.AddOption("min_mapping_len", "", opt.min_mapping_len, ""); | ^~~~~~~~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:47:38: error: ‘struct LocalAsmOption’ has no member named ‘sparsity’ 47 | desc.AddOption("sparsity", "", opt.sparsity, "sparsity of hash mapper"); | ^~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:50:42: error: ‘struct LocalAsmOption’ has no member named ‘num_threads’ 50 | desc.AddOption("num_threads", "t", opt.num_threads, ""); | ^~~~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:64:13: error: ‘struct LocalAsmOption’ has no member named ‘num_threads’ 64 | if (opt.num_threads == 0) { | ^~~~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:65:11: error: ‘struct LocalAsmOption’ has no member named ‘num_threads’ 65 | opt.num_threads = omp_get_max_threads(); | ^~~~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp: In function ‘int main_local(int, char**)’: /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:83:27: error: ‘struct LocalAsmOption’ has no member named ‘num_threads’ 83 | omp_set_num_threads(opt.num_threads); | ^~~~~~~~~~~ make[2]: *** [CMakeFiles/megahit_core.dir/build.make:135: CMakeFiles/megahit_core.dir/src/main_local_assemble.cpp.o] Error 1 make[2]: *** Waiting for unfinished jobs.... [ 17%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o /gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/bin/i586-pc-gnu-g++ -I/tmp/guix-build-megahit-1.2.9.drv-0/source/src -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/tmp/guix-build-megahit-1.2.9.drv-0/source/src"' -O2 -g -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o -c /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_assemble.cpp cc1plus: warning: ‘-fprefetch-loop-arrays’ not supported for this target (try ‘-march’ switches) [ 18%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o /gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/bin/i586-pc-gnu-g++ -I/tmp/guix-build-megahit-1.2.9.drv-0/source/src -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/tmp/guix-build-megahit-1.2.9.drv-0/source/src"' -O2 -g -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o -c /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_buildlib.cpp cc1plus: warning: ‘-fprefetch-loop-arrays’ not supported for this target (try ‘-march’ switches) [ 19%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o /gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/bin/i586-pc-gnu-g++ -I/tmp/guix-build-megahit-1.2.9.drv-0/source/src -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/tmp/guix-build-megahit-1.2.9.drv-0/source/src"' -O2 -g -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o -c /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_iterate.cpp cc1plus: warning: ‘-fprefetch-loop-arrays’ not supported for this target (try ‘-march’ switches) [ 19%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o /gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/bin/i586-pc-gnu-g++ -I/tmp/guix-build-megahit-1.2.9.drv-0/source/src -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/tmp/guix-build-megahit-1.2.9.drv-0/source/src"' -O2 -g -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o -c /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp [ 20%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o /gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/bin/i586-pc-gnu-g++ -I/tmp/guix-build-megahit-1.2.9.drv-0/source/src -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/tmp/guix-build-megahit-1.2.9.drv-0/source/src"' -O2 -g -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o -c /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_sdbg_build.cpp cc1plus: warning: ‘-fprefetch-loop-arrays’ not supported for this target (try ‘-march’ switches) cc1plus: warning: ‘-fprefetch-loop-arrays’ not supported for this target (try ‘-march’ switches) In file included from /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:27: /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:31:3: error: ‘uint32_t’ does not name a type 31 | uint32_t kmin{11}; | ^~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:1:1: note: ‘uint32_t’ is defined in header ‘’; this is probably fixable by adding ‘#include ’ +++ |+#include 1 | /* /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:32:3: error: ‘uint32_t’ does not name a type 32 | uint32_t kmax{41}; | ^~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:32:3: note: ‘uint32_t’ is defined in header ‘’; this is probably fixable by adding ‘#include ’ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:33:3: error: ‘uint32_t’ does not name a type 33 | uint32_t step{6}; | ^~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:33:3: note: ‘uint32_t’ is defined in header ‘’; this is probably fixable by adding ‘#include ’ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:34:3: error: ‘uint32_t’ does not name a type 34 | uint32_t seed_kmer{31}; | ^~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:34:3: note: ‘uint32_t’ is defined in header ‘’; this is probably fixable by adding ‘#include ’ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:36:3: error: ‘uint32_t’ does not name a type 36 | uint32_t min_contig_len{200}; | ^~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:36:3: note: ‘uint32_t’ is defined in header ‘’; this is probably fixable by adding ‘#include ’ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:37:3: error: ‘uint32_t’ does not name a type 37 | uint32_t sparsity{8}; | ^~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:37:3: note: ‘uint32_t’ is defined in header ‘’; this is probably fixable by adding ‘#include ’ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:39:3: error: ‘uint32_t’ does not name a type 39 | uint32_t min_mapping_len{75}; | ^~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:39:3: note: ‘uint32_t’ is defined in header ‘’; this is probably fixable by adding ‘#include ’ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:41:3: error: ‘uint32_t’ does not name a type 41 | uint32_t num_threads{0}; | ^~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/localasm/local_assemble.h:41:3: note: ‘uint32_t’ is defined in header ‘’; this is probably fixable by adding ‘#include ’ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp: In function ‘LocalAsmOption {anonymous}::ParseLocalAsmOptions(int, char**)’: /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:40:34: error: ‘struct LocalAsmOption’ has no member named ‘kmin’ 40 | desc.AddOption("kmin", "", opt.kmin, ""); | ^~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:41:34: error: ‘struct LocalAsmOption’ has no member named ‘kmax’ 41 | desc.AddOption("kmax", "", opt.kmax, ""); | ^~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:42:34: error: ‘struct LocalAsmOption’ has no member named ‘step’ 42 | desc.AddOption("step", "", opt.step, ""); | ^~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:43:39: error: ‘struct LocalAsmOption’ has no member named ‘seed_kmer’ 43 | desc.AddOption("seed_kmer", "", opt.seed_kmer, | ^~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:45:44: error: ‘struct LocalAsmOption’ has no member named ‘min_contig_len’ 45 | desc.AddOption("min_contig_len", "", opt.min_contig_len, ""); | ^~~~~~~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:46:45: error: ‘struct LocalAsmOption’ has no member named ‘min_mapping_len’ 46 | desc.AddOption("min_mapping_len", "", opt.min_mapping_len, ""); | ^~~~~~~~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:47:38: error: ‘struct LocalAsmOption’ has no member named ‘sparsity’ 47 | desc.AddOption("sparsity", "", opt.sparsity, "sparsity of hash mapper"); | ^~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:50:42: error: ‘struct LocalAsmOption’ has no member named ‘num_threads’ 50 | desc.AddOption("num_threads", "t", opt.num_threads, ""); | ^~~~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:64:13: error: ‘struct LocalAsmOption’ has no member named ‘num_threads’ 64 | if (opt.num_threads == 0) { | ^~~~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:65:11: error: ‘struct LocalAsmOption’ has no member named ‘num_threads’ 65 | opt.num_threads = omp_get_max_threads(); | ^~~~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp: In function ‘int main_local(int, char**)’: /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_local_assemble.cpp:83:27: error: ‘struct LocalAsmOption’ has no member named ‘num_threads’ 83 | omp_set_num_threads(opt.num_threads); | ^~~~~~~~~~~ [ 21%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o /gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/bin/i586-pc-gnu-g++ -I/tmp/guix-build-megahit-1.2.9.drv-0/source/src -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/tmp/guix-build-megahit-1.2.9.drv-0/source/src"' -O2 -g -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o -c /tmp/guix-build-megahit-1.2.9.drv-0/source/src/utils/options_description.cpp cc1plus: warning: ‘-fprefetch-loop-arrays’ not supported for this target (try ‘-march’ switches) [ 22%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o /gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/bin/i586-pc-gnu-g++ -I/tmp/guix-build-megahit-1.2.9.drv-0/source/src -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/tmp/guix-build-megahit-1.2.9.drv-0/source/src"' -O2 -g -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o -c /tmp/guix-build-megahit-1.2.9.drv-0/source/src/assembly/bubble_remover.cpp cc1plus: warning: ‘-fprefetch-loop-arrays’ not supported for this target (try ‘-march’ switches) [ 23%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o /gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/bin/i586-pc-gnu-g++ -I/tmp/guix-build-megahit-1.2.9.drv-0/source/src -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/tmp/guix-build-megahit-1.2.9.drv-0/source/src"' -O2 -g -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o -c /tmp/guix-build-megahit-1.2.9.drv-0/source/src/assembly/contig_output.cpp [ 24%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o /gnu/store/6nijn1wha2nyq6xmjdqjynhssq2l2qzl-gcc-cross-i586-pc-gnu-14.2.0/bin/i586-pc-gnu-g++ -I/tmp/guix-build-megahit-1.2.9.drv-0/source/src -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -fprefetch-loop-arrays -funroll-loops -D__XROOT__='"/tmp/guix-build-megahit-1.2.9.drv-0/source/src"' -O2 -g -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o -c /tmp/guix-build-megahit-1.2.9.drv-0/source/src/assembly/low_depth_remover.cpp cc1plus: warning: ‘-fprefetch-loop-arrays’ not supported for this target (try ‘-march’ switches) cc1plus: warning: ‘-fprefetch-loop-arrays’ not supported for this target (try ‘-march’ switches) make[2]: *** [CMakeFiles/megahit_core_no_hw_accel.dir/build.make:135: CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o] Error 1 make[2]: *** Waiting for unfinished jobs.... In file included from /tmp/guix-build-megahit-1.2.9.drv-0/source/src/sdbg/sdbg.h:15, from /tmp/guix-build-megahit-1.2.9.drv-0/source/src/assembly/unitig_graph.h:11, from /tmp/guix-build-megahit-1.2.9.drv-0/source/src/assembly/bubble_remover.h:10, from /tmp/guix-build-megahit-1.2.9.drv-0/source/src/assembly/all_algo.h:8, from /tmp/guix-build-megahit-1.2.9.drv-0/source/src/main_assemble.cpp:29: /tmp/guix-build-megahit-1.2.9.drv-0/source/src/kmlib/kmrns.h: In instantiation of ‘Tx kmlib::internal::Pdep(Tx, Ty) [with Tx = long long unsigned int; Ty = long long unsigned int]’: /tmp/guix-build-megahit-1.2.9.drv-0/source/src/kmlib/kmrns.h:264:40: required from ‘unsigned int kmlib::RankAndSelect::SelectInWord(uint8_t, int, word_type) const [with unsigned int BaseSize = 1; unsigned int AlphabetSize = 2; unsigned int Mode = 1; TWord = long long unsigned int; TInterval = unsigned int; unsigned int BasePerL2Interval = 65536; unsigned int BasePerL1Interval = 1024; unsigned int SelectSampleSize = 4096; uint8_t = unsigned char; word_type = long long unsigned int]’ 264 | return internal::Ctz(internal::Pdep(word_type(1) << (num_c - 1), x)) / | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/kmlib/kmrns.h:386:48: required from ‘kmlib::RankAndSelect::size_type kmlib::RankAndSelect::SelectFwd(uint8_t, TInterval, unsigned int) const [with unsigned int BaseSize = 1; unsigned int AlphabetSize = 2; unsigned int Mode = 1; TWord = long long unsigned int; TInterval = unsigned int; unsigned int BasePerL2Interval = 65536; unsigned int BasePerL1Interval = 1024; unsigned int SelectSampleSize = 4096; size_type = long long int; uint8_t = unsigned char]’ 386 | return pos + (p - begin) * kBasesPerWord + SelectInWord(c, remain, *p); | ^~~~~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/kmlib/kmrns.h:341:14: required from ‘kmlib::RankAndSelect::size_type kmlib::RankAndSelect::InternalSelect(uint8_t, size_type) const [with unsigned int BaseSize = 1; unsigned int AlphabetSize = 2; unsigned int Mode = 1; TWord = long long unsigned int; TInterval = unsigned int; unsigned int BasePerL2Interval = 65536; unsigned int BasePerL1Interval = 1024; unsigned int SelectSampleSize = 4096; size_type = long long int; uint8_t = unsigned char]’ 341 | return SelectFwd(c, interval_l, remain); | ^~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/kmlib/kmrns.h:181:12: required from ‘kmlib::RankAndSelect::size_type kmlib::RankAndSelect::select(size_type) const [with unsigned int BaseSize = 1; unsigned int AlphabetSize = 2; unsigned int Mode = 1; TWord = long long unsigned int; TInterval = unsigned int; unsigned int BasePerL2Interval = 65536; unsigned int BasePerL1Interval = 1024; unsigned int SelectSampleSize = 4096; size_type = long long int]’ 181 | return InternalSelect(1, ranking); | ^~~~~~~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/sdbg/sdbg.h:113:27: required from here 113 | return rs_last_.select(rank_f_[a] + count_a - 1); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/kmlib/kmrns.h:81:53: error: ‘_pdep_u64’ was not declared in this scope; did you mean ‘_pdep_u32’? 81 | : sizeof(Tx) <= sizeof(ULL) ? _pdep_u64(x, y) : 0; | ~~~~~~~~~^~~~~~ | _pdep_u32 In file included from /tmp/guix-build-megahit-1.2.9.drv-0/source/src/sdbg/sdbg.h:15, from /tmp/guix-build-megahit-1.2.9.drv-0/source/src/assembly/unitig_graph.h:11, from /tmp/guix-build-megahit-1.2.9.drv-0/source/src/assembly/bubble_remover.h:10, from /tmp/guix-build-megahit-1.2.9.drv-0/source/src/assembly/bubble_remover.cpp:5: /tmp/guix-build-megahit-1.2.9.drv-0/source/src/kmlib/kmrns.h: In instantiation of ‘Tx kmlib::internal::Pdep(Tx, Ty) [with Tx = long long unsigned int; Ty = long long unsigned int]’: /tmp/guix-build-megahit-1.2.9.drv-0/source/src/kmlib/kmrns.h:264:40: required from ‘unsigned int kmlib::RankAndSelect::SelectInWord(uint8_t, int, word_type) const [with unsigned int BaseSize = 1; unsigned int AlphabetSize = 2; unsigned int Mode = 1; TWord = long long unsigned int; TInterval = unsigned int; unsigned int BasePerL2Interval = 65536; unsigned int BasePerL1Interval = 1024; unsigned int SelectSampleSize = 4096; uint8_t = unsigned char; word_type = long long unsigned int]’ 264 | return internal::Ctz(internal::Pdep(word_type(1) << (num_c - 1), x)) / | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/kmlib/kmrns.h:386:48: required from ‘kmlib::RankAndSelect::size_type kmlib::RankAndSelect::SelectFwd(uint8_t, TInterval, unsigned int) const [with unsigned int BaseSize = 1; unsigned int AlphabetSize = 2; unsigned int Mode = 1; TWord = long long unsigned int; TInterval = unsigned int; unsigned int BasePerL2Interval = 65536; unsigned int BasePerL1Interval = 1024; unsigned int SelectSampleSize = 4096; size_type = long long int; uint8_t = unsigned char]’ 386 | return pos + (p - begin) * kBasesPerWord + SelectInWord(c, remain, *p); | ^~~~~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/kmlib/kmrns.h:341:14: required from ‘kmlib::RankAndSelect::size_type kmlib::RankAndSelect::InternalSelect(uint8_t, size_type) const [with unsigned int BaseSize = 1; unsigned int AlphabetSize = 2; unsigned int Mode = 1; TWord = long long unsigned int; TInterval = unsigned int; unsigned int BasePerL2Interval = 65536; unsigned int BasePerL1Interval = 1024; unsigned int SelectSampleSize = 4096; size_type = long long int; uint8_t = unsigned char]’ 341 | return SelectFwd(c, interval_l, remain); | ^~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/kmlib/kmrns.h:181:12: required from ‘kmlib::RankAndSelect::size_type kmlib::RankAndSelect::select(size_type) const [with unsigned int BaseSize = 1; unsigned int AlphabetSize = 2; unsigned int Mode = 1; TWord = long long unsigned int; TInterval = unsigned int; unsigned int BasePerL2Interval = 65536; unsigned int BasePerL1Interval = 1024; unsigned int SelectSampleSize = 4096; size_type = long long int]’ 181 | return InternalSelect(1, ranking); | ^~~~~~~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/sdbg/sdbg.h:113:27: required from here 113 | return rs_last_.select(rank_f_[a] + count_a - 1); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /tmp/guix-build-megahit-1.2.9.drv-0/source/src/kmlib/kmrns.h:81:53: error: ‘_pdep_u64’ was not declared in this scope; did you mean ‘_pdep_u32’? 81 | : sizeof(Tx) <= sizeof(ULL) ? _pdep_u64(x, y) : 0; | ~~~~~~~~~^~~~~~ | _pdep_u32 make[2]: *** [CMakeFiles/megahit_core.dir/build.make:177: CMakeFiles/megahit_core.dir/src/assembly/bubble_remover.cpp.o] Error 1 make[2]: *** [CMakeFiles/megahit_core.dir/build.make:93: CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o] Error 1 make[2]: Leaving directory '/tmp/guix-build-megahit-1.2.9.drv-0/build' make[1]: *** [CMakeFiles/Makefile2:121: CMakeFiles/megahit_core_popcnt.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... make[2]: Leaving directory '/tmp/guix-build-megahit-1.2.9.drv-0/build' make[1]: *** [CMakeFiles/Makefile2:95: CMakeFiles/megahit_core.dir/all] Error 2 make[2]: Leaving directory '/tmp/guix-build-megahit-1.2.9.drv-0/build' make[1]: *** [CMakeFiles/Makefile2:147: CMakeFiles/megahit_core_no_hw_accel.dir/all] Error 2 make[1]: Leaving directory '/tmp/guix-build-megahit-1.2.9.drv-0/build' make: *** [Makefile:139: all] Error 2 error: in phase 'build': uncaught exception: %exception #<&invoke-error program: "make" arguments: ("-j" "16") exit-status: 2 term-signal: #f stop-signal: #f> phase `build' failed after 65.3 seconds command "make" "-j" "16" failed with status 2 build process 18 exited with status 256