WARNING: (guile-user): imported module (guix build utils) overrides core binding `delete'
starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/n45927m6c879hxdbpj3p63krrwz96rrj-meson-0.60.3/bin:/gnu/store/yqv6h38aa5809l4d8mz078knwf86mb32-ninja-1.10.2/bin:/gnu/store/2b3blhwbag1ial0dhxw7wh4zjxl0cqpk-pkg-config-0.29.2/bin:/gnu/store/j3cx0yaqdpw0mxizp5bayx93pya44dhn-python-wrapper-3.9.9/bin:/gnu/store/379y8g7rccm24jngspap2721ajfkpdli-samtools-1.14/bin:/gnu/store/7v9dkzwphzmmbz16cmkpgvm5dycsm9b1-htslib-1.14/bin:/gnu/store/g2ajyl8xk9aarxrgjbng2hkj3qm2v0z2-tar-1.34/bin:/gnu/store/iixwcv3k49ks1rf34pjgfzmzyhhgwng3-gzip-1.10/bin:/gnu/store/s3hl12jxz9ybs7nsy7kq7ybzz7qnzmsg-bzip2-1.0.8/bin:/gnu/store/c8isj4jq6knv0icfgr43di6q3nvdzkx7-xz-5.2.5/bin:/gnu/store/4ic6244i3ca4b4rxc2wnrgllsidyishv-file-5.39/bin:/gnu/store/ahmmvw21p11ik80lg1f953y7fd8bqkjm-diffutils-3.8/bin:/gnu/store/z39hnrwds1dgcbpfgj8dnv2cngjb2xbl-patch-2.7.6/bin:/gnu/store/39rsx3nl4c31952jybbjb8d6idr5hx7r-findutils-4.8.0/bin:/gnu/store/690qz3fg334dpwn3pn6k59n4wc943p2b-gawk-5.1.0/bin:/gnu/store/wxgv6i8g0p24q5gcyzd0yr07s8kn9680-sed-4.8/bin:/gnu/store/xjwp2hsd9256icjjybfrmznppjicywf6-grep-3.6/bin:/gnu/store/d251rfgc9nm2clzffzhgiipdvfvzkvwi-coreutils-8.32/bin:/gnu/store/55cbpsi18mahg131nmiya6km5b4mscfa-make-4.3/bin:/gnu/store/4y5m9lb8k3qkb1y9m02sw9w9a6hacd16-bash-minimal-5.1.8/bin:/gnu/store/s2pg5k98fl2g2szg9dykxyd9zl3xihv9-ld-wrapper-0/bin:/gnu/store/rc781v4k0drhaqn90xfwwpspki5x0bvf-binutils-2.37/bin:/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/bin:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/bin:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/sbin:/gnu/store/b6j1qw1a5rkbfvcy7lc9fm95abbzpa4x-python-3.9.9/bin'
environment variable `PKG_CONFIG_PATH' set to `/gnu/store/5a6dfa4rys7963wqvwfn8p4mb8yyl3p0-googletest-1.11.0/lib/pkgconfig:/gnu/store/7v9dkzwphzmmbz16cmkpgvm5dycsm9b1-htslib-1.14/lib/pkgconfig:/gnu/store/5yrx3pcg5xscjh590fmsi9wqkwdbn1fy-pbcopper-1.9.0-1.ad4143a/lib/pkgconfig:/gnu/store/8qv5kb2fgm4c3bf70zcg9l6hkf3qzpw9-zlib-1.2.11/lib/pkgconfig:/gnu/store/c8isj4jq6knv0icfgr43di6q3nvdzkx7-xz-5.2.5/lib/pkgconfig:/gnu/store/4ic6244i3ca4b4rxc2wnrgllsidyishv-file-5.39/lib/pkgconfig:/gnu/store/b6j1qw1a5rkbfvcy7lc9fm95abbzpa4x-python-3.9.9/lib/pkgconfig'
environment variable `GUIX_PYTHONPATH' set to `/gnu/store/n45927m6c879hxdbpj3p63krrwz96rrj-meson-0.60.3/lib/python3.9/site-packages:/gnu/store/b6j1qw1a5rkbfvcy7lc9fm95abbzpa4x-python-3.9.9/lib/python3.9/site-packages'
environment variable `PYTHONTZPATH' unset
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/5a6dfa4rys7963wqvwfn8p4mb8yyl3p0-googletest-1.11.0/include:/gnu/store/f5l9m0dspdjxspdrnvfs4p0rncdhyigf-boost-1.77.0/include:/gnu/store/7v9dkzwphzmmbz16cmkpgvm5dycsm9b1-htslib-1.14/include:/gnu/store/5yrx3pcg5xscjh590fmsi9wqkwdbn1fy-pbcopper-1.9.0-1.ad4143a/include:/gnu/store/8qv5kb2fgm4c3bf70zcg9l6hkf3qzpw9-zlib-1.2.11/include:/gnu/store/s3hl12jxz9ybs7nsy7kq7ybzz7qnzmsg-bzip2-1.0.8/include:/gnu/store/c8isj4jq6knv0icfgr43di6q3nvdzkx7-xz-5.2.5/include:/gnu/store/4ic6244i3ca4b4rxc2wnrgllsidyishv-file-5.39/include:/gnu/store/690qz3fg334dpwn3pn6k59n4wc943p2b-gawk-5.1.0/include:/gnu/store/55cbpsi18mahg131nmiya6km5b4mscfa-make-4.3/include:/gnu/store/rc781v4k0drhaqn90xfwwpspki5x0bvf-binutils-2.37/include:/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/include:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/include:/gnu/store/b6j1qw1a5rkbfvcy7lc9fm95abbzpa4x-python-3.9.9/include:/gnu/store/6mjww4iz4xdan74d5bbjfh7il8rngfkk-linux-libre-headers-5.10.35/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/5a6dfa4rys7963wqvwfn8p4mb8yyl3p0-googletest-1.11.0/include:/gnu/store/f5l9m0dspdjxspdrnvfs4p0rncdhyigf-boost-1.77.0/include:/gnu/store/7v9dkzwphzmmbz16cmkpgvm5dycsm9b1-htslib-1.14/include:/gnu/store/5yrx3pcg5xscjh590fmsi9wqkwdbn1fy-pbcopper-1.9.0-1.ad4143a/include:/gnu/store/8qv5kb2fgm4c3bf70zcg9l6hkf3qzpw9-zlib-1.2.11/include:/gnu/store/s3hl12jxz9ybs7nsy7kq7ybzz7qnzmsg-bzip2-1.0.8/include:/gnu/store/c8isj4jq6knv0icfgr43di6q3nvdzkx7-xz-5.2.5/include:/gnu/store/4ic6244i3ca4b4rxc2wnrgllsidyishv-file-5.39/include:/gnu/store/690qz3fg334dpwn3pn6k59n4wc943p2b-gawk-5.1.0/include:/gnu/store/55cbpsi18mahg131nmiya6km5b4mscfa-make-4.3/include:/gnu/store/rc781v4k0drhaqn90xfwwpspki5x0bvf-binutils-2.37/include:/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/include/c++:/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/include:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/include:/gnu/store/b6j1qw1a5rkbfvcy7lc9fm95abbzpa4x-python-3.9.9/include:/gnu/store/6mjww4iz4xdan74d5bbjfh7il8rngfkk-linux-libre-headers-5.10.35/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/n45927m6c879hxdbpj3p63krrwz96rrj-meson-0.60.3/lib:/gnu/store/5a6dfa4rys7963wqvwfn8p4mb8yyl3p0-googletest-1.11.0/lib:/gnu/store/f5l9m0dspdjxspdrnvfs4p0rncdhyigf-boost-1.77.0/lib:/gnu/store/7v9dkzwphzmmbz16cmkpgvm5dycsm9b1-htslib-1.14/lib:/gnu/store/5yrx3pcg5xscjh590fmsi9wqkwdbn1fy-pbcopper-1.9.0-1.ad4143a/lib:/gnu/store/8qv5kb2fgm4c3bf70zcg9l6hkf3qzpw9-zlib-1.2.11/lib:/gnu/store/s3hl12jxz9ybs7nsy7kq7ybzz7qnzmsg-bzip2-1.0.8/lib:/gnu/store/c8isj4jq6knv0icfgr43di6q3nvdzkx7-xz-5.2.5/lib:/gnu/store/4ic6244i3ca4b4rxc2wnrgllsidyishv-file-5.39/lib:/gnu/store/690qz3fg334dpwn3pn6k59n4wc943p2b-gawk-5.1.0/lib:/gnu/store/rc781v4k0drhaqn90xfwwpspki5x0bvf-binutils-2.37/lib:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/lib:/gnu/store/4jdghmc65q7i7ib89zmvq66l0ghf7jc4-glibc-2.33-static/lib:/gnu/store/fnr1z6xsan0437r0yg48d0y8k32kqxby-glibc-utf8-locales-2.33/lib:/gnu/store/b6j1qw1a5rkbfvcy7lc9fm95abbzpa4x-python-3.9.9/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/fnr1z6xsan0437r0yg48d0y8k32kqxby-glibc-utf8-locales-2.33/lib/locale'
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'en_US.utf8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/meson_options.txt' -> `./meson_options.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/bamboo_build.sh' -> `./bamboo_build.sh'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/.clang-format' -> `./.clang-format'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/README.md' -> `./README.md'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/LICENSE.txt' -> `./LICENSE.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/meson.build' -> `./meson.build'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/.gitignore' -> `./.gitignore'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/INSTALL.md' -> `./INSTALL.md'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/.travis.yml' -> `./.travis.yml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/CHANGELOG.md' -> `./CHANGELOG.md'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/meson.build' -> `./tests/meson.build'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/scripts/cram.py' -> `./tests/scripts/cram.py'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/scripts/generate_data.py' -> `./tests/scripts/generate_data.py'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/scripts/cram/_cli.py' -> `./tests/scripts/cram/_cli.py'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/scripts/cram/_diff.py' -> `./tests/scripts/cram/_diff.py'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/scripts/cram/__main__.py' -> `./tests/scripts/cram/__main__.py'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/scripts/cram/__init__.py' -> `./tests/scripts/cram/__init__.py'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/scripts/cram/_run.py' -> `./tests/scripts/cram/_run.py'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/scripts/cram/_test.py' -> `./tests/scripts/cram/_test.py'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/scripts/cram/_encoding.py' -> `./tests/scripts/cram/_encoding.py'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/scripts/cram/_main.py' -> `./tests/scripts/cram/_main.py'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/scripts/cram/_process.py' -> `./tests/scripts/cram/_process.py'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/scripts/cram/_xunit.py' -> `./tests/scripts/cram/_xunit.py'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/zero_byte_check/main.cpp' -> `./tests/zero_byte_check/main.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/zero_byte_check/meson.build' -> `./tests/zero_byte_check/meson.build'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/unmap2.bam.bai' -> `./tests/data/unmap2.bam.bai'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/phi29.bam.pbi' -> `./tests/data/phi29.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/23.ccs.bam.pbi' -> `./tests/data/23.ccs.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/empty.bam' -> `./tests/data/empty.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/segfault.bam' -> `./tests/data/segfault.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/aligned2.bam' -> `./tests/data/aligned2.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/lambdaNEB.fa' -> `./tests/data/lambdaNEB.fa'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/aligned.bam.pbi' -> `./tests/data/aligned.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/referenceset.xml' -> `./tests/data/referenceset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/chimera_minimal.fasta' -> `./tests/data/chimera_minimal.fasta'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/transcript.subreads.bam' -> `./tests/data/transcript.subreads.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/zero_bytes.bam' -> `./tests/data/zero_bytes.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/unmap2.bam' -> `./tests/data/unmap2.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/barcoded_read_groups.bam.pbi' -> `./tests/data/barcoded_read_groups.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/refskip.bam' -> `./tests/data/refskip.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/phi29.bam' -> `./tests/data/phi29.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/lambdaNEB-missing-fai.fa' -> `./tests/data/lambdaNEB-missing-fai.fa'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/transcript.subreads.bam.pbi' -> `./tests/data/transcript.subreads.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/aligned.sam' -> `./tests/data/aligned.sam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/clip_to_query.bam' -> `./tests/data/clip_to_query.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/transcriptset.xml' -> `./tests/data/transcriptset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/aligned2.bam.bai' -> `./tests/data/aligned2.bam.bai'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/chemistry.xml' -> `./tests/data/chemistry.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/merge.fofn' -> `./tests/data/merge.fofn'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/softclip_deletions.bam' -> `./tests/data/softclip_deletions.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/zero_bytes.sam' -> `./tests/data/zero_bytes.sam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/23.ccs.bam' -> `./tests/data/23.ccs.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/long-cigar-1.7.bam' -> `./tests/data/long-cigar-1.7.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/unmap1.bam' -> `./tests/data/unmap1.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/empty.bam.pbi' -> `./tests/data/empty.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/aligned.bam' -> `./tests/data/aligned.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/lambdaNEB.fa.fai' -> `./tests/data/lambdaNEB.fa.fai'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/long_reads.bam' -> `./tests/data/long_reads.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/aligned.bam.bai' -> `./tests/data/aligned.bam.bai'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/barcoded_read_groups.bam' -> `./tests/data/barcoded_read_groups.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/unmap1.bam.bai' -> `./tests/data/unmap1.bam.bai'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/aligned2.bam.pbi' -> `./tests/data/aligned2.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/barcoded_movie_filter/barcoded.xml' -> `./tests/data/barcoded_movie_filter/barcoded.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/barcoded_movie_filter/barcoded.bam' -> `./tests/data/barcoded_movie_filter/barcoded.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/barcoded_movie_filter/barcoded.bam.pbi' -> `./tests/data/barcoded_movie_filter/barcoded.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/internal.polymerase.bam' -> `./tests/data/polymerase/internal.polymerase.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/production_hq.hqregion.bam.pbi' -> `./tests/data/polymerase/production_hq.hqregion.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/production.scraps.bam' -> `./tests/data/polymerase/production.scraps.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/internal.lqregions.bam.pbi' -> `./tests/data/polymerase/internal.lqregions.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/production.scraps.bam.pbi' -> `./tests/data/polymerase/production.scraps.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/internal.subreads.bam.pbi' -> `./tests/data/polymerase/internal.subreads.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/scrapless.subreads.bam' -> `./tests/data/polymerase/scrapless.subreads.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/internal.lqregions.bam' -> `./tests/data/polymerase/internal.lqregions.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/production.subreads.bam.pbi' -> `./tests/data/polymerase/production.subreads.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/internal.hqregions.bam.pbi' -> `./tests/data/polymerase/internal.hqregions.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/internal.subreads.bam' -> `./tests/data/polymerase/internal.subreads.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/internal.scraps.bam' -> `./tests/data/polymerase/internal.scraps.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/consolidate.subread.dataset.xml' -> `./tests/data/polymerase/consolidate.subread.dataset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/internal.hqregions.bam' -> `./tests/data/polymerase/internal.hqregions.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/qnameFiltered.subreads.dataset.xml' -> `./tests/data/polymerase/qnameFiltered.subreads.dataset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/production.subreads.bam' -> `./tests/data/polymerase/production.subreads.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/multiple_resources.subread.dataset.xml' -> `./tests/data/polymerase/multiple_resources.subread.dataset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/qname_whitelist.txt' -> `./tests/data/polymerase/qname_whitelist.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/scrapless.subreads.bam.pbi' -> `./tests/data/polymerase/scrapless.subreads.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/filtered_resources.subread.dataset.xml' -> `./tests/data/polymerase/filtered_resources.subread.dataset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/scrapless.scraps.bam' -> `./tests/data/polymerase/scrapless.scraps.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/production_hq.scraps.bam.pbi' -> `./tests/data/polymerase/production_hq.scraps.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/internal.polymerase.bam.pbi' -> `./tests/data/polymerase/internal.polymerase.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/scrapless.scraps.bam.pbi' -> `./tests/data/polymerase/scrapless.scraps.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/production_hq.scraps.bam' -> `./tests/data/polymerase/production_hq.scraps.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/production.polymerase.bam' -> `./tests/data/polymerase/production.polymerase.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/production_hq.hqregion.bam' -> `./tests/data/polymerase/production_hq.hqregion.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/polymerase/internal.scraps.bam.pbi' -> `./tests/data/polymerase/internal.scraps.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/group/test1.bam.pbi' -> `./tests/data/group/test1.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/group/test1.bam' -> `./tests/data/group/test1.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/group/test2.bam' -> `./tests/data/group/test2.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/group/test3.bam' -> `./tests/data/group/test3.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/group/group.fofn.in' -> `./tests/data/group/group.fofn.in'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/group/test2.bam.pbi' -> `./tests/data/group/test2.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/ccs-kinetics-bystrandify/ccs-kinetics-bystrandify-mock-input.2.bam.pbi' -> `./tests/data/ccs-kinetics-bystrandify/ccs-kinetics-bystrandify-mock-input.2.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/ccs-kinetics-bystrandify/ccs-kinetics-bystrandify-single-input.consensusreadset.xml' -> `./tests/data/ccs-kinetics-bystrandify/ccs-kinetics-bystrandify-single-input.consensusreadset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/ccs-kinetics-bystrandify/ccs-kinetics-bystrandify-mock-input.2.bam' -> `./tests/data/ccs-kinetics-bystrandify/ccs-kinetics-bystrandify-mock-input.2.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/ccs-kinetics-bystrandify/ccs-kinetics-bystrandify-mock-input.consensusreadset.xml' -> `./tests/data/ccs-kinetics-bystrandify/ccs-kinetics-bystrandify-mock-input.consensusreadset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/ccs-kinetics-bystrandify/ccs-kinetics-bystrandify-mock-input.bam.pbi' -> `./tests/data/ccs-kinetics-bystrandify/ccs-kinetics-bystrandify-mock-input.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/ccs-kinetics-bystrandify/ccs-kinetics-bystrandify-mock-input.bam' -> `./tests/data/ccs-kinetics-bystrandify/ccs-kinetics-bystrandify-mock-input.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/relative/relative.xml' -> `./tests/data/relative/relative.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/relative/relative2.fofn' -> `./tests/data/relative/relative2.fofn'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/relative/relative.fofn' -> `./tests/data/relative/relative.fofn'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/relative/a/test.bam' -> `./tests/data/relative/a/test.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/relative/b/test1.bam' -> `./tests/data/relative/b/test1.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/relative/b/test2.bam' -> `./tests/data/relative/b/test2.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/zmws/m64004_200204_230803.zmws.bam' -> `./tests/data/zmws/m64004_200204_230803.zmws.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/bed/test.bed.gz' -> `./tests/data/bed/test.bed.gz'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/bed/test.bed' -> `./tests/data/bed/test.bed'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/pbbamify/synthetic_movie_2.subreads.bam.bai' -> `./tests/data/pbbamify/synthetic_movie_2.subreads.bam.bai'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/pbbamify/synthetic_movie_2.subreads.bam' -> `./tests/data/pbbamify/synthetic_movie_2.subreads.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/pbbamify/synthetic_movie_3.subreads.bam.pbi' -> `./tests/data/pbbamify/synthetic_movie_3.subreads.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/pbbamify/synthetic-ref-1.fa.fai' -> `./tests/data/pbbamify/synthetic-ref-1.fa.fai'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/pbbamify/synthetic-ref-1.fa' -> `./tests/data/pbbamify/synthetic-ref-1.fa'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/pbbamify/input-aligned-1.bam' -> `./tests/data/pbbamify/input-aligned-1.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/pbbamify/synthetic_movie_3.subreads.bam' -> `./tests/data/pbbamify/synthetic_movie_3.subreads.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/pbbamify/synthetic_movie_3.subreads.bam.bai' -> `./tests/data/pbbamify/synthetic_movie_3.subreads.bam.bai'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/pbbamify/input-aligned-2.bam' -> `./tests/data/pbbamify/input-aligned-2.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/pbbamify/input-aligned-3.bam' -> `./tests/data/pbbamify/input-aligned-3.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/pbbamify/synthetic_movie_1.subreads.bam' -> `./tests/data/pbbamify/synthetic_movie_1.subreads.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/pbbamify/synthetic_movie_1.subreads.bam.bai' -> `./tests/data/pbbamify/synthetic_movie_1.subreads.bam.bai'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/pbbamify/input-aligned-all.bam' -> `./tests/data/pbbamify/input-aligned-all.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/pbbamify/synthetic_movie_2.subreads.bam.pbi' -> `./tests/data/pbbamify/synthetic_movie_2.subreads.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/pbbamify/synthetic_movie_1.subreads.bam.pbi' -> `./tests/data/pbbamify/synthetic_movie_1.subreads.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/pbbamify/synthetic_movie_all.subreadset.xml.in' -> `./tests/data/pbbamify/synthetic_movie_all.subreadset.xml.in'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/test_group_query/test1.bam' -> `./tests/data/test_group_query/test1.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/test_group_query/test2.bam' -> `./tests/data/test_group_query/test2.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/test_group_query/test3.bam' -> `./tests/data/test_group_query/test3.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/test_group_query/group.fofn.in' -> `./tests/data/test_group_query/group.fofn.in'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/test_group_query/test2.bam.pbi' -> `./tests/data/test_group_query/test2.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/vcf/structural_variants.vcf' -> `./tests/data/vcf/structural_variants.vcf'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/vcf/empty.vcf' -> `./tests/data/vcf/empty.vcf'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/vcf/unsorted.vcf' -> `./tests/data/vcf/unsorted.vcf'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/stitching/test_qstart.scraps.bam.pbi' -> `./tests/data/stitching/test_qstart.scraps.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/stitching/test_qstart.subreads.bam' -> `./tests/data/stitching/test_qstart.subreads.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/stitching/test_qstart.subreads.bam.pbi' -> `./tests/data/stitching/test_qstart.subreads.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/stitching/test_qstart.scraps.bam' -> `./tests/data/stitching/test_qstart.scraps.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.2.subreads.bam' -> `./tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.2.subreads.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.3.subreads.bam.pbi' -> `./tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.3.subreads.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.3.subreads.bam' -> `./tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.3.subreads.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.2.subreads.bam.pbi' -> `./tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.2.subreads.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/chunking/chunking.subreadset.xml' -> `./tests/data/chunking/chunking.subreadset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.1.subreads.bam.pbi' -> `./tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.1.subreads.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.1.subreads.bam' -> `./tests/data/chunking/m150404_101626_42267_c100807920800000001823174110291514_s1_p0.1.subreads.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/fastx/simple-bgzf.fq.gz.gzi' -> `./tests/data/fastx/simple-bgzf.fq.gz.gzi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/fastx/simple-bgzf.fa.gz.gzi' -> `./tests/data/fastx/simple-bgzf.fa.gz.gzi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/fastx/chunking.fq' -> `./tests/data/fastx/chunking.fq'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/fastx/windows_formatted.fasta' -> `./tests/data/fastx/windows_formatted.fasta'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/fastx/fasta_cache_check.fa' -> `./tests/data/fastx/fasta_cache_check.fa'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/fastx/simple.fa.fai' -> `./tests/data/fastx/simple.fa.fai'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/fastx/chunking.fa' -> `./tests/data/fastx/chunking.fa'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/fastx/chunking.fa.fai' -> `./tests/data/fastx/chunking.fa.fai'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/fastx/fasta_extension.referenceset.xml' -> `./tests/data/fastx/fasta_extension.referenceset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/fastx/simple-bgzf.fa.gz.fai' -> `./tests/data/fastx/simple-bgzf.fa.gz.fai'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/fastx/simple-bgzf.fq.gz.fai' -> `./tests/data/fastx/simple-bgzf.fq.gz.fai'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/fastx/simple.fsa.fai' -> `./tests/data/fastx/simple.fsa.fai'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/fastx/simple.fsa' -> `./tests/data/fastx/simple.fsa'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/fastx/windows_formatted.fastq' -> `./tests/data/fastx/windows_formatted.fastq'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/fastx/simple-gzip.fq.gz' -> `./tests/data/fastx/simple-gzip.fq.gz'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/fastx/simple.fq' -> `./tests/data/fastx/simple.fq'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/fastx/simple-bgzf.fa.gz' -> `./tests/data/fastx/simple-bgzf.fa.gz'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/fastx/simple.fa' -> `./tests/data/fastx/simple.fa'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/fastx/simple-bgzf.fq.gz' -> `./tests/data/fastx/simple-bgzf.fq.gz'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/fastx/chunking.fq.fai' -> `./tests/data/fastx/chunking.fq.fai'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/fastx/simple.fq.fai' -> `./tests/data/fastx/simple.fq.fai'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/fastx/simple-gzip.fa.gz' -> `./tests/data/fastx/simple-gzip.fa.gz'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/pbalchemy10kbp.xml' -> `./tests/data/dataset/pbalchemy10kbp.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/subread_dataset1.xml' -> `./tests/data/dataset/subread_dataset1.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/bam_mapping_new.bam' -> `./tests/data/dataset/bam_mapping_new.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/subread_dataset2.xml' -> `./tests/data/dataset/subread_dataset2.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/malformed.xml' -> `./tests/data/dataset/malformed.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/bam_mapping_new.bam.pbi' -> `./tests/data/dataset/bam_mapping_new.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/bam_mapping_2.bam' -> `./tests/data/dataset/bam_mapping_2.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/reference.dataset.xml' -> `./tests/data/dataset/reference.dataset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/qname_filter.bam' -> `./tests/data/dataset/qname_filter.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/bam_mapping_2.bam.pbi' -> `./tests/data/dataset/bam_mapping_2.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/barcode.dataset.xml' -> `./tests/data/dataset/barcode.dataset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/qname_filter.bam.pbi' -> `./tests/data/dataset/qname_filter.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/ali1.xml' -> `./tests/data/dataset/ali1.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/lambda_contigs.xml' -> `./tests/data/dataset/lambda_contigs.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/transformed_rs_subread_dataset.xml' -> `./tests/data/dataset/transformed_rs_subread_dataset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/ali3.xml' -> `./tests/data/dataset/ali3.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/bam_mapping.bam' -> `./tests/data/dataset/bam_mapping.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/bam_mapping.bam.pbi' -> `./tests/data/dataset/bam_mapping.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/bam_mapping_staggered.xml' -> `./tests/data/dataset/bam_mapping_staggered.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/biosample.subreadset.xml' -> `./tests/data/dataset/biosample.subreadset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/bam_mapping_1.bam.pbi' -> `./tests/data/dataset/bam_mapping_1.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/ccsread.dataset.xml' -> `./tests/data/dataset/ccsread.dataset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/subread_dataset3.xml' -> `./tests/data/dataset/subread_dataset3.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/ali2.xml' -> `./tests/data/dataset/ali2.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/bam_mapping_1.bam' -> `./tests/data/dataset/bam_mapping_1.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/ali4.xml' -> `./tests/data/dataset/ali4.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/samples/dataset_sample_test.subreadset.xml' -> `./tests/data/dataset/samples/dataset_sample_test.subreadset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/samples/sample1_a.bam' -> `./tests/data/dataset/samples/sample1_a.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/samples/sample2.bam' -> `./tests/data/dataset/samples/sample2.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/dataset/samples/sample1_b.bam' -> `./tests/data/dataset/samples/sample1_b.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/test_GenomicIntervals/whole_contig.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/whole_contig.alignmentset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/test_GenomicIntervals/contig_name_only.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/contig_name_only.alignmentset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/test_GenomicIntervals/two_contigs.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/two_contigs.alignmentset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/test_GenomicIntervals/disjoint_intervals.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/disjoint_intervals.alignmentset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/test_GenomicIntervals/invalid_tstart_operator.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/invalid_tstart_operator.alignmentset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/test_GenomicIntervals/invalid_rname_operator.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/invalid_rname_operator.alignmentset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/test_GenomicIntervals/single_interval_start_lte.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/single_interval_start_lte.alignmentset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/test_GenomicIntervals/adjacent_intervals.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/adjacent_intervals.alignmentset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/test_GenomicIntervals/test_contigs.bam' -> `./tests/data/test_GenomicIntervals/test_contigs.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/test_GenomicIntervals/test_contigs.bam.pbi' -> `./tests/data/test_GenomicIntervals/test_contigs.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/test_GenomicIntervals/single_interval_end_gte.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/single_interval_end_gte.alignmentset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/test_GenomicIntervals/single_interval.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/single_interval.alignmentset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/test_GenomicIntervals/out_of_range.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/out_of_range.alignmentset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/test_GenomicIntervals/no_filter.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/no_filter.alignmentset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/test_GenomicIntervals/invalid_missing_rname.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/invalid_missing_rname.alignmentset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/test_GenomicIntervals/empty.alignmentset.xml' -> `./tests/data/test_GenomicIntervals/empty.alignmentset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/test_GenomicIntervals/test_contigs.fasta' -> `./tests/data/test_GenomicIntervals/test_contigs.fasta'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/pbi_version/version3.bam.pbi' -> `./tests/data/pbi_version/version3.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/pbi_version/version3.bam' -> `./tests/data/pbi_version/version3.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/pbi_version/version4.bam' -> `./tests/data/pbi_version/version4.bam'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/pbi_version/version4.bam.pbi' -> `./tests/data/pbi_version/version4.bam.pbi'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/pbi_version/incompatible.alignmentset.xml' -> `./tests/data/pbi_version/incompatible.alignmentset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/run_metadata/barcodes.subreadset.xml' -> `./tests/data/run_metadata/barcodes.subreadset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/run_metadata/collection_metadata.xml' -> `./tests/data/run_metadata/collection_metadata.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/run_metadata/id.run.metadata.xml' -> `./tests/data/run_metadata/id.run.metadata.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/run_metadata/id.metadata.xml' -> `./tests/data/run_metadata/id.metadata.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/data/run_metadata/id.subreadset.xml' -> `./tests/data/run_metadata/id.subreadset.xml'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_IndexedFastqReader.cpp' -> `./tests/src/test_IndexedFastqReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_SequenceUtils.cpp' -> `./tests/src/test_SequenceUtils.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_BgzipFastqWriter.cpp' -> `./tests/src/test_BgzipFastqWriter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_FastaReader.cpp' -> `./tests/src/test_FastaReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_EntireFileQuery.cpp' -> `./tests/src/test_EntireFileQuery.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_EndToEnd.cpp' -> `./tests/src/test_EndToEnd.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_Validator.cpp' -> `./tests/src/test_Validator.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_VcfQuery.cpp' -> `./tests/src/test_VcfQuery.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_StringUtils.cpp' -> `./tests/src/test_StringUtils.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_FaiIndex.cpp' -> `./tests/src/test_FaiIndex.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_PbiFilter.cpp' -> `./tests/src/test_PbiFilter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_BamRecordImplVariableData.cpp' -> `./tests/src/test_BamRecordImplVariableData.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_VcfSort.cpp' -> `./tests/src/test_VcfSort.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_BamReader.cpp' -> `./tests/src/test_BamReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_Tags.cpp' -> `./tests/src/test_Tags.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_ZmwReadStitcher.cpp' -> `./tests/src/test_ZmwReadStitcher.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_IndexedFastaReader.cpp' -> `./tests/src/test_IndexedFastaReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_VcfHeader.cpp' -> `./tests/src/test_VcfHeader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_Pulse2BaseCache.cpp' -> `./tests/src/test_Pulse2BaseCache.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/PbbamTestData.h.in' -> `./tests/src/PbbamTestData.h.in'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_BamHeader.cpp' -> `./tests/src/test_BamHeader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_BamRecord.cpp' -> `./tests/src/test_BamRecord.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_CollectionMetadata.cpp' -> `./tests/src/test_CollectionMetadata.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_IndexedBamWriter.cpp' -> `./tests/src/test_IndexedBamWriter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_ZmwQuery.cpp' -> `./tests/src/test_ZmwQuery.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_CompositeBamReaders.cpp' -> `./tests/src/test_CompositeBamReaders.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_LongCigar.cpp' -> `./tests/src/test_LongCigar.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_FileUtils.cpp' -> `./tests/src/test_FileUtils.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_FastaSequence.cpp' -> `./tests/src/test_FastaSequence.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_VcfFormat.cpp' -> `./tests/src/test_VcfFormat.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_FastaSequenceQuery.cpp' -> `./tests/src/test_FastaSequenceQuery.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_BamWriter.cpp' -> `./tests/src/test_BamWriter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_BamRecordImplCore.cpp' -> `./tests/src/test_BamRecordImplCore.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_GenomicIntervalQuery.cpp' -> `./tests/src/test_GenomicIntervalQuery.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_RunMetadata.cpp' -> `./tests/src/test_RunMetadata.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_BamFile.cpp' -> `./tests/src/test_BamFile.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_FastaCache.cpp' -> `./tests/src/test_FastaCache.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_AlignmentPrinter.cpp' -> `./tests/src/test_AlignmentPrinter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_ZmwChunkedFastxReader.cpp' -> `./tests/src/test_ZmwChunkedFastxReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_VcfReader.cpp' -> `./tests/src/test_VcfReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_TextFileWriter.cpp' -> `./tests/src/test_TextFileWriter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_BedReader.cpp' -> `./tests/src/test_BedReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_PacBioIndex.cpp' -> `./tests/src/test_PacBioIndex.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/FastxTests.h' -> `./tests/src/FastxTests.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_WhitelistedZmwReadStitcher.cpp' -> `./tests/src/test_WhitelistedZmwReadStitcher.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_TimeUtils.cpp' -> `./tests/src/test_TimeUtils.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_DataSetXsd.cpp' -> `./tests/src/test_DataSetXsd.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_DataSetGenomicIntervals.cpp' -> `./tests/src/test_DataSetGenomicIntervals.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_FastqReader.cpp' -> `./tests/src/test_FastqReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_ReadGroupInfo.cpp' -> `./tests/src/test_ReadGroupInfo.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_VcfFile.cpp' -> `./tests/src/test_VcfFile.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_QualityValues.cpp' -> `./tests/src/test_QualityValues.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_VcfWriter.cpp' -> `./tests/src/test_VcfWriter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_FastqSequence.cpp' -> `./tests/src/test_FastqSequence.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_PbiFilterQuery.cpp' -> `./tests/src/test_PbiFilterQuery.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_DataSetQuery.cpp' -> `./tests/src/test_DataSetQuery.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_BamRecordClipping.cpp' -> `./tests/src/test_BamRecordClipping.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/meson.build' -> `./tests/src/meson.build'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_SamIO.cpp' -> `./tests/src/test_SamIO.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_BamRecordImplTags.cpp' -> `./tests/src/test_BamRecordImplTags.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_FastqWriter.cpp' -> `./tests/src/test_FastqWriter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_BedWriter.cpp' -> `./tests/src/test_BedWriter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_BgzipWriter.cpp' -> `./tests/src/test_BgzipWriter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_FaiZmwChunker.cpp' -> `./tests/src/test_FaiZmwChunker.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_DataSetIO.cpp' -> `./tests/src/test_DataSetIO.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_BgzipFastaWriter.cpp' -> `./tests/src/test_BgzipFastaWriter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_Compare.cpp' -> `./tests/src/test_Compare.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_DataSetCore.cpp' -> `./tests/src/test_DataSetCore.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_Version.cpp' -> `./tests/src/test_Version.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_TextFileReader.cpp' -> `./tests/src/test_TextFileReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_VcfVariant.cpp' -> `./tests/src/test_VcfVariant.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_FastaWriter.cpp' -> `./tests/src/test_FastaWriter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/test_BamRecordMapping.cpp' -> `./tests/src/test_BamRecordMapping.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/zero_byte_check/meson.build' -> `./tests/src/zero_byte_check/meson.build'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/cram/pbmerge_dataset.t.in' -> `./tests/src/cram/pbmerge_dataset.t.in'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/cram/pbmerge_mixed_ordering.t.in' -> `./tests/src/cram/pbmerge_mixed_ordering.t.in'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/cram/pbmerge_aligned_ordering.t.in' -> `./tests/src/cram/pbmerge_aligned_ordering.t.in'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/cram/zero_byte_check.t' -> `./tests/src/cram/zero_byte_check.t'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/cram/pbindexdump_cpp.t.in' -> `./tests/src/cram/pbindexdump_cpp.t.in'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/cram/pbindexdump_json.t.in' -> `./tests/src/cram/pbindexdump_json.t.in'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/cram/bam2sam.t.in' -> `./tests/src/cram/bam2sam.t.in'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/cram/ccs-kinetics-bystrandify.t' -> `./tests/src/cram/ccs-kinetics-bystrandify.t'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/cram/pbbamify.t.in' -> `./tests/src/cram/pbbamify.t.in'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/cram/pbmerge_fofn.t.in' -> `./tests/src/cram/pbmerge_fofn.t.in'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tests/src/cram/pbmerge_pacbio_ordering.t.in' -> `./tests/src/cram/pbmerge_pacbio_ordering.t.in'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/scripts/ci/install.sh' -> `./scripts/ci/install.sh'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/scripts/ci/setup.sh' -> `./scripts/ci/setup.sh'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/scripts/ci/test.sh' -> `./scripts/ci/test.sh'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/scripts/ci/build.sh' -> `./scripts/ci/build.sh'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/scripts/ci/artifact.sh' -> `./scripts/ci/artifact.sh'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/meson.build' -> `./include/meson.build'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/CompositeBamReader.h' -> `./include/pbbam/CompositeBamReader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/Position.h' -> `./include/pbbam/Position.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/Accuracy.h' -> `./include/pbbam/Accuracy.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/PbiFile.h' -> `./include/pbbam/PbiFile.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/ZmwTypeMap.h' -> `./include/pbbam/ZmwTypeMap.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/RunMetadata.h' -> `./include/pbbam/RunMetadata.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/LocalContextFlags.h' -> `./include/pbbam/LocalContextFlags.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/QualityValue.h' -> `./include/pbbam/QualityValue.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/GenomicInterval.h' -> `./include/pbbam/GenomicInterval.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/Tag.h' -> `./include/pbbam/Tag.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/BamRecord.h' -> `./include/pbbam/BamRecord.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/FastaReader.h' -> `./include/pbbam/FastaReader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/FormatUtils.h' -> `./include/pbbam/FormatUtils.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/TagCollection.h' -> `./include/pbbam/TagCollection.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/BamRecordTag.h' -> `./include/pbbam/BamRecordTag.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/ZmwChunkedFastaReader.h' -> `./include/pbbam/ZmwChunkedFastaReader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/PbiBuilder.h' -> `./include/pbbam/PbiBuilder.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/TextFileWriter.h' -> `./include/pbbam/TextFileWriter.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/BamHeader.h' -> `./include/pbbam/BamHeader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/PbiFilterQuery.h' -> `./include/pbbam/PbiFilterQuery.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/SamWriter.h' -> `./include/pbbam/SamWriter.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/TextFileReader.h' -> `./include/pbbam/TextFileReader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/IndexedFastqReader.h' -> `./include/pbbam/IndexedFastqReader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/SamReader.h' -> `./include/pbbam/SamReader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/Orientation.h' -> `./include/pbbam/Orientation.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/ZmwGroupQuery.h' -> `./include/pbbam/ZmwGroupQuery.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/DataSetTypes.h' -> `./include/pbbam/DataSetTypes.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/SequenceInfo.h' -> `./include/pbbam/SequenceInfo.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/FrameEncodingType.h' -> `./include/pbbam/FrameEncodingType.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/BamWriter.h' -> `./include/pbbam/BamWriter.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/PulseBehavior.h' -> `./include/pbbam/PulseBehavior.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/BaiIndexCache.h' -> `./include/pbbam/BaiIndexCache.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/QualityValues.h' -> `./include/pbbam/QualityValues.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/FastqWriter.h' -> `./include/pbbam/FastqWriter.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/PulseExclusionReason.h' -> `./include/pbbam/PulseExclusionReason.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/Deleters.h' -> `./include/pbbam/Deleters.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/MD5.h' -> `./include/pbbam/MD5.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/EntireFileQuery.h' -> `./include/pbbam/EntireFileQuery.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/Cigar.h' -> `./include/pbbam/Cigar.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/IFastaWriter.h' -> `./include/pbbam/IFastaWriter.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/PbiFilter.h' -> `./include/pbbam/PbiFilter.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/LibraryInfo.h' -> `./include/pbbam/LibraryInfo.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/CigarOperation.h' -> `./include/pbbam/CigarOperation.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/IRecordWriter.h' -> `./include/pbbam/IRecordWriter.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/SNR.h' -> `./include/pbbam/SNR.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/DataSet.h' -> `./include/pbbam/DataSet.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/FastqReader.h' -> `./include/pbbam/FastqReader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/PbiRawData.h' -> `./include/pbbam/PbiRawData.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/Frames.h' -> `./include/pbbam/Frames.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/GenomicIntervalQuery.h' -> `./include/pbbam/GenomicIntervalQuery.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/BamRecordView.h' -> `./include/pbbam/BamRecordView.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/StringUtilities.h' -> `./include/pbbam/StringUtilities.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/IndexedBamWriter.h' -> `./include/pbbam/IndexedBamWriter.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/CompositeFastaReader.h' -> `./include/pbbam/CompositeFastaReader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/FastaWriter.h' -> `./include/pbbam/FastaWriter.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/AlignmentPrinter.h' -> `./include/pbbam/AlignmentPrinter.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/PbiBasicTypes.h' -> `./include/pbbam/PbiBasicTypes.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/PbiIndexedBamReader.h' -> `./include/pbbam/PbiIndexedBamReader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/PbiFilterTypes.h' -> `./include/pbbam/PbiFilterTypes.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/BamRecordImpl.h' -> `./include/pbbam/BamRecordImpl.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/FastqSequence.h' -> `./include/pbbam/FastqSequence.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/FaiIndex.h' -> `./include/pbbam/FaiIndex.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/FastaSequence.h' -> `./include/pbbam/FastaSequence.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/ZmwType.h' -> `./include/pbbam/ZmwType.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/BamTagCodec.h' -> `./include/pbbam/BamTagCodec.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/FastaSequenceQuery.h' -> `./include/pbbam/FastaSequenceQuery.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/DataSetXsd.h' -> `./include/pbbam/DataSetXsd.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/Interval.h' -> `./include/pbbam/Interval.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/RecordType.h' -> `./include/pbbam/RecordType.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/ReadGroupInfo.h' -> `./include/pbbam/ReadGroupInfo.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/ZmwQuery.h' -> `./include/pbbam/ZmwQuery.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/BgzipFastaWriter.h' -> `./include/pbbam/BgzipFastaWriter.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/SamTagCodec.h' -> `./include/pbbam/SamTagCodec.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/ZmwChunkedFastqReader.h' -> `./include/pbbam/ZmwChunkedFastqReader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/MoveAppend.h' -> `./include/pbbam/MoveAppend.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/Strand.h' -> `./include/pbbam/Strand.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/BgzipFastqWriter.h' -> `./include/pbbam/BgzipFastqWriter.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/CollectionMetadata.h' -> `./include/pbbam/CollectionMetadata.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/PbbamVersion.h' -> `./include/pbbam/PbbamVersion.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/BaiIndexedBamReader.h' -> `./include/pbbam/BaiIndexedBamReader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/BamFileMerger.h' -> `./include/pbbam/BamFileMerger.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/IndexedFastaReader.h' -> `./include/pbbam/IndexedFastaReader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/Validator.h' -> `./include/pbbam/Validator.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/ProgramInfo.h' -> `./include/pbbam/ProgramInfo.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/FastaCache.h' -> `./include/pbbam/FastaCache.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/Config.h' -> `./include/pbbam/Config.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/IFastqWriter.h' -> `./include/pbbam/IFastqWriter.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/BgzipWriter.h' -> `./include/pbbam/BgzipWriter.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/BamFile.h' -> `./include/pbbam/BamFile.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/Compare.h' -> `./include/pbbam/Compare.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/BamReader.h' -> `./include/pbbam/BamReader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/ClipType.h' -> `./include/pbbam/ClipType.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/bed/BedWriter.h' -> `./include/pbbam/bed/BedWriter.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/bed/BedReader.h' -> `./include/pbbam/bed/BedReader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/virtual/ZmwWhitelistVirtualReader.h' -> `./include/pbbam/virtual/ZmwWhitelistVirtualReader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/virtual/VirtualRegionTypeMap.h' -> `./include/pbbam/virtual/VirtualRegionTypeMap.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/virtual/ZmwReadStitcher.h' -> `./include/pbbam/virtual/ZmwReadStitcher.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/virtual/VirtualRegion.h' -> `./include/pbbam/virtual/VirtualRegion.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/virtual/VirtualPolymeraseReader.h' -> `./include/pbbam/virtual/VirtualPolymeraseReader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/virtual/WhitelistedZmwReadStitcher.h' -> `./include/pbbam/virtual/WhitelistedZmwReadStitcher.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/virtual/VirtualPolymeraseCompositeReader.h' -> `./include/pbbam/virtual/VirtualPolymeraseCompositeReader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/virtual/VirtualZmwBamRecord.h' -> `./include/pbbam/virtual/VirtualZmwBamRecord.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/virtual/VirtualPolymeraseBamRecord.h' -> `./include/pbbam/virtual/VirtualPolymeraseBamRecord.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/virtual/VirtualRegionType.h' -> `./include/pbbam/virtual/VirtualRegionType.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/vcf/VcfReader.h' -> `./include/pbbam/vcf/VcfReader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/vcf/VcfQuery.h' -> `./include/pbbam/vcf/VcfQuery.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/vcf/VcfFile.h' -> `./include/pbbam/vcf/VcfFile.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/vcf/VcfHeader.h' -> `./include/pbbam/vcf/VcfHeader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/vcf/VcfWriter.h' -> `./include/pbbam/vcf/VcfWriter.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/vcf/VcfVariant.h' -> `./include/pbbam/vcf/VcfVariant.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/vcf/VcfFormat.h' -> `./include/pbbam/vcf/VcfFormat.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/vcf/VcfHeaderTypes.h' -> `./include/pbbam/vcf/VcfHeaderTypes.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/vcf/VcfSort.h' -> `./include/pbbam/vcf/VcfSort.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/internal/CompositeBamReader.inl' -> `./include/pbbam/internal/CompositeBamReader.inl'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/internal/QueryBase.inl' -> `./include/pbbam/internal/QueryBase.inl'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/internal/Compare.inl' -> `./include/pbbam/internal/Compare.inl'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/internal/DataSetElement.h' -> `./include/pbbam/internal/DataSetElement.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/internal/PbiFilter.inl' -> `./include/pbbam/internal/PbiFilter.inl'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/internal/DataSetElement.inl' -> `./include/pbbam/internal/DataSetElement.inl'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/internal/QueryBase.h' -> `./include/pbbam/internal/QueryBase.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/internal/PbiBasicTypes.inl' -> `./include/pbbam/internal/PbiBasicTypes.inl'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/internal/DataSetBaseTypes.h' -> `./include/pbbam/internal/DataSetBaseTypes.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/internal/PbiFilterTypes.inl' -> `./include/pbbam/internal/PbiFilterTypes.inl'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/exception/InvalidSequencingChemistryException.h' -> `./include/pbbam/exception/InvalidSequencingChemistryException.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/exception/ValidationException.h' -> `./include/pbbam/exception/ValidationException.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/include/pbbam/exception/BundleChemistryMappingException.h' -> `./include/pbbam/exception/BundleChemistryMappingException.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/check-formatting' -> `./tools/check-formatting'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/check-eof' -> `./tools/check-eof'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/git-clang-format' -> `./tools/git-clang-format'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/format-all' -> `./tools/format-all'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/meson.build' -> `./tools/meson.build'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/win32/clang-format.exe' -> `./tools/win32/clang-format.exe'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/ccs-kinetics-bystrandify/src/CcsKineticsBystrandifySettings.cpp' -> `./tools/ccs-kinetics-bystrandify/src/CcsKineticsBystrandifySettings.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/ccs-kinetics-bystrandify/src/CcsKineticsBystrandifySettings.h' -> `./tools/ccs-kinetics-bystrandify/src/CcsKineticsBystrandifySettings.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/ccs-kinetics-bystrandify/src/CcsKineticsBystrandifyWorkflow.h' -> `./tools/ccs-kinetics-bystrandify/src/CcsKineticsBystrandifyWorkflow.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/ccs-kinetics-bystrandify/src/main.cpp' -> `./tools/ccs-kinetics-bystrandify/src/main.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/ccs-kinetics-bystrandify/src/CcsKineticsBystrandifyWorkflow.cpp' -> `./tools/ccs-kinetics-bystrandify/src/CcsKineticsBystrandifyWorkflow.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/ccs-kinetics-bystrandify/src/CcsKineticsBystrandifyVersion.h.in' -> `./tools/ccs-kinetics-bystrandify/src/CcsKineticsBystrandifyVersion.h.in'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbbamify/src/PbBamifyWorkflow.cpp' -> `./tools/pbbamify/src/PbBamifyWorkflow.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbbamify/src/PbBamifyVersion.h.in' -> `./tools/pbbamify/src/PbBamifyVersion.h.in'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbbamify/src/PbBamifyWorkflow.h' -> `./tools/pbbamify/src/PbBamifyWorkflow.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbbamify/src/QueryLookup.h' -> `./tools/pbbamify/src/QueryLookup.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbbamify/src/main.cpp' -> `./tools/pbbamify/src/main.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbbamify/src/QueryLookup.cpp' -> `./tools/pbbamify/src/QueryLookup.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbbamify/src/PbBamifySettings.cpp' -> `./tools/pbbamify/src/PbBamifySettings.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbbamify/src/PbBamifySettings.h' -> `./tools/pbbamify/src/PbBamifySettings.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/bam2sam/src/Bam2SamWorkflow.cpp' -> `./tools/bam2sam/src/Bam2SamWorkflow.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/bam2sam/src/Bam2SamWorkflow.h' -> `./tools/bam2sam/src/Bam2SamWorkflow.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/bam2sam/src/Bam2SamVersion.h.in' -> `./tools/bam2sam/src/Bam2SamVersion.h.in'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/bam2sam/src/main.cpp' -> `./tools/bam2sam/src/main.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/bam2sam/src/Bam2SamSettings.h' -> `./tools/bam2sam/src/Bam2SamSettings.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/bam2sam/src/Bam2SamSettings.cpp' -> `./tools/bam2sam/src/Bam2SamSettings.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbindexdump/src/JsonFormatter.h' -> `./tools/pbindexdump/src/JsonFormatter.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbindexdump/src/PbIndexDumpSettings.h' -> `./tools/pbindexdump/src/PbIndexDumpSettings.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbindexdump/src/CppFormatter.h' -> `./tools/pbindexdump/src/CppFormatter.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbindexdump/src/PbIndexDumpSettings.cpp' -> `./tools/pbindexdump/src/PbIndexDumpSettings.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbindexdump/src/PbIndexDumpWorkflow.h' -> `./tools/pbindexdump/src/PbIndexDumpWorkflow.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbindexdump/src/PbIndexDumpVersion.h.in' -> `./tools/pbindexdump/src/PbIndexDumpVersion.h.in'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbindexdump/src/main.cpp' -> `./tools/pbindexdump/src/main.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbindexdump/src/PbIndexDumpWorkflow.cpp' -> `./tools/pbindexdump/src/PbIndexDumpWorkflow.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbindexdump/src/CppFormatter.cpp' -> `./tools/pbindexdump/src/CppFormatter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbindexdump/src/JsonFormatter.cpp' -> `./tools/pbindexdump/src/JsonFormatter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/Darwin/clang-format' -> `./tools/Darwin/clang-format'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/Linux/clang-format' -> `./tools/Linux/clang-format'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbindex/src/PbIndexWorkflow.h' -> `./tools/pbindex/src/PbIndexWorkflow.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbindex/src/PbIndexVersion.h.in' -> `./tools/pbindex/src/PbIndexVersion.h.in'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbindex/src/main.cpp' -> `./tools/pbindex/src/main.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbindex/src/PbIndexSettings.cpp' -> `./tools/pbindex/src/PbIndexSettings.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbindex/src/PbIndexWorkflow.cpp' -> `./tools/pbindex/src/PbIndexWorkflow.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbindex/src/PbIndexSettings.h' -> `./tools/pbindex/src/PbIndexSettings.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbmerge/src/PbMergeSettings.cpp' -> `./tools/pbmerge/src/PbMergeSettings.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbmerge/src/main.cpp' -> `./tools/pbmerge/src/main.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbmerge/src/PbMergeWorkflow.h' -> `./tools/pbmerge/src/PbMergeWorkflow.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbmerge/src/PbMergeSettings.h' -> `./tools/pbmerge/src/PbMergeSettings.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbmerge/src/PbMergeVersion.h.in' -> `./tools/pbmerge/src/PbMergeVersion.h.in'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/tools/pbmerge/src/PbMergeWorkflow.cpp' -> `./tools/pbmerge/src/PbMergeWorkflow.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/Makefile' -> `./docs/Makefile'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/meson.build' -> `./docs/meson.build'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/Doxyfile.in' -> `./docs/Doxyfile.in'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/specs/pbbam_updated_release3_2.rst' -> `./docs/specs/pbbam_updated_release3_2.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/specs/pbbam_structure.png' -> `./docs/specs/pbbam_structure.png'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/specs/pbbam.rst' -> `./docs/specs/pbbam.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/plaintext/AlignmentPrinterOutput.txt' -> `./docs/examples/plaintext/AlignmentPrinterOutput.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/plaintext/PbiFilter_DataSetXmlFilters.txt' -> `./docs/examples/plaintext/PbiFilter_DataSetXmlFilters.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiBarcodeReverseFilter.txt' -> `./docs/examples/code/PbiBarcodeReverseFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Compare.txt' -> `./docs/examples/code/Compare.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiFilter_CustomFilter.txt' -> `./docs/examples/code/PbiFilter_CustomFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiNumMatchesFilter.txt' -> `./docs/examples/code/PbiNumMatchesFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiAlignedEndFilter.txt' -> `./docs/examples/code/PbiAlignedEndFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiNumDeletedBasesFilter.txt' -> `./docs/examples/code/PbiNumDeletedBasesFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Compare_ReadGroupId.txt' -> `./docs/examples/code/Compare_ReadGroupId.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiQueryNameFilter.txt' -> `./docs/examples/code/PbiQueryNameFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiReferenceIdFilter.txt' -> `./docs/examples/code/PbiReferenceIdFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiQueryLengthFilter.txt' -> `./docs/examples/code/PbiQueryLengthFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiFilterQuery.txt' -> `./docs/examples/code/PbiFilterQuery.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Compare_ReferenceStart.txt' -> `./docs/examples/code/Compare_ReferenceStart.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiLocalContextFilter.txt' -> `./docs/examples/code/PbiLocalContextFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Compare_BarcodeQuality.txt' -> `./docs/examples/code/Compare_BarcodeQuality.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Compare_NumInsertedBases.txt' -> `./docs/examples/code/Compare_NumInsertedBases.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Compare_MapQuality.txt' -> `./docs/examples/code/Compare_MapQuality.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Compare_BarcodeReverse.txt' -> `./docs/examples/code/Compare_BarcodeReverse.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Compare_AlignedEnd.txt' -> `./docs/examples/code/Compare_AlignedEnd.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiBuilder_WithReader.txt' -> `./docs/examples/code/PbiBuilder_WithReader.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiIdentityFilter.txt' -> `./docs/examples/code/PbiIdentityFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiQueryEndFilter.txt' -> `./docs/examples/code/PbiQueryEndFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/GenomicIntervalQuery.txt' -> `./docs/examples/code/GenomicIntervalQuery.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Compare_Zmw.txt' -> `./docs/examples/code/Compare_Zmw.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/EntireFileQuery_NonConst.txt' -> `./docs/examples/code/EntireFileQuery_NonConst.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Tag_AsciiCtor.txt' -> `./docs/examples/code/Tag_AsciiCtor.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiNumMismatchesFilter.txt' -> `./docs/examples/code/PbiNumMismatchesFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiBuilder_WithWriter.txt' -> `./docs/examples/code/PbiBuilder_WithWriter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiBarcodeForwardFilter.txt' -> `./docs/examples/code/PbiBarcodeForwardFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Compare_TypeFromOperator.txt' -> `./docs/examples/code/Compare_TypeFromOperator.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiBarcodeFilter.txt' -> `./docs/examples/code/PbiBarcodeFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Compare_ReadGroupNumericId.txt' -> `./docs/examples/code/Compare_ReadGroupNumericId.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Compare_LocalContextFlag.txt' -> `./docs/examples/code/Compare_LocalContextFlag.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiMapQualityFilter.txt' -> `./docs/examples/code/PbiMapQualityFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiAlignedLengthFilter.txt' -> `./docs/examples/code/PbiAlignedLengthFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiReferenceNameFilter.txt' -> `./docs/examples/code/PbiReferenceNameFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiBarcodesFilter.txt' -> `./docs/examples/code/PbiBarcodesFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiAlignedStartFilter.txt' -> `./docs/examples/code/PbiAlignedStartFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiNumInsertedBasesFilter.txt' -> `./docs/examples/code/PbiNumInsertedBasesFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Compare_ReferenceEnd.txt' -> `./docs/examples/code/Compare_ReferenceEnd.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Compare_NumMismatches.txt' -> `./docs/examples/code/Compare_NumMismatches.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Compare_BarcodeForward.txt' -> `./docs/examples/code/Compare_BarcodeForward.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/GenomicIntervalQuery_Reuse.txt' -> `./docs/examples/code/GenomicIntervalQuery_Reuse.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Compare_MovieName.txt' -> `./docs/examples/code/Compare_MovieName.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/ZmwQuery.txt' -> `./docs/examples/code/ZmwQuery.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Compare_AlignedStrand.txt' -> `./docs/examples/code/Compare_AlignedStrand.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiReferenceEndFilter.txt' -> `./docs/examples/code/PbiReferenceEndFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Compare_NumDeletedBases.txt' -> `./docs/examples/code/Compare_NumDeletedBases.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiZmwFilter.txt' -> `./docs/examples/code/PbiZmwFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Compare_ReferenceName.txt' -> `./docs/examples/code/Compare_ReferenceName.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiFilter_Interface.txt' -> `./docs/examples/code/PbiFilter_Interface.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Compare_QueryEnd.txt' -> `./docs/examples/code/Compare_QueryEnd.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/WhitelistedZmwReadStitcher.txt' -> `./docs/examples/code/WhitelistedZmwReadStitcher.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiAlignedStrandFilter.txt' -> `./docs/examples/code/PbiAlignedStrandFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiMovieNameFilter.txt' -> `./docs/examples/code/PbiMovieNameFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/ZmwGroupQuery.txt' -> `./docs/examples/code/ZmwGroupQuery.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Compare_NumMatches.txt' -> `./docs/examples/code/Compare_NumMatches.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Compare_QueryStart.txt' -> `./docs/examples/code/Compare_QueryStart.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiBarcodeQualityFilter.txt' -> `./docs/examples/code/PbiBarcodeQualityFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Compare_FullName.txt' -> `./docs/examples/code/Compare_FullName.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiReferenceStartFilter.txt' -> `./docs/examples/code/PbiReferenceStartFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiReadAccuracyFilter.txt' -> `./docs/examples/code/PbiReadAccuracyFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiFilter_Composition.txt' -> `./docs/examples/code/PbiFilter_Composition.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiReadGroupFilter.txt' -> `./docs/examples/code/PbiReadGroupFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Compare_ReadAccuracy.txt' -> `./docs/examples/code/Compare_ReadAccuracy.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/PbiQueryStartFilter.txt' -> `./docs/examples/code/PbiQueryStartFilter.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Compare_ReferenceId.txt' -> `./docs/examples/code/Compare_ReferenceId.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/EntireFileQuery_BamFilename.txt' -> `./docs/examples/code/EntireFileQuery_BamFilename.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/EntireFileQuery.txt' -> `./docs/examples/code/EntireFileQuery.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Compare_AlignedStart.txt' -> `./docs/examples/code/Compare_AlignedStart.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/examples/code/Compare_TypeToName.txt' -> `./docs/examples/code/Compare_TypeToName.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/index.rst' -> `./docs/source/index.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/conf.py' -> `./docs/source/conf.py'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/getting_started.rst' -> `./docs/source/getting_started.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/commandline_utilities.rst' -> `./docs/source/commandline_utilities.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/requirements.txt' -> `./docs/source/requirements.txt'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api_reference.rst' -> `./docs/source/api_reference.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/tools/pbindex.rst' -> `./docs/source/tools/pbindex.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/tools/pbmerge.rst' -> `./docs/source/tools/pbmerge.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/tools/pbindexdump.rst' -> `./docs/source/tools/pbindexdump.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/tools/bam2sam.rst' -> `./docs/source/tools/bam2sam.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/Filter.rst' -> `./docs/source/api/Filter.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/DataSetMetadata.rst' -> `./docs/source/api/DataSetMetadata.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/PbiRawMappedData.rst' -> `./docs/source/api/PbiRawMappedData.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/SubreadSet.rst' -> `./docs/source/api/SubreadSet.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/SequentialCompositeBamReader.rst' -> `./docs/source/api/SequentialCompositeBamReader.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/HdfSubreadSet.rst' -> `./docs/source/api/HdfSubreadSet.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/ExternalResource.rst' -> `./docs/source/api/ExternalResource.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/Strand.rst' -> `./docs/source/api/Strand.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/BamRecordImpl.rst' -> `./docs/source/api/BamRecordImpl.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/BamReader.rst' -> `./docs/source/api/BamReader.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/VirtualPolymeraseReader.rst' -> `./docs/source/api/VirtualPolymeraseReader.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/DataSet.rst' -> `./docs/source/api/DataSet.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/CigarOperation.rst' -> `./docs/source/api/CigarOperation.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/LocalContextFlags.rst' -> `./docs/source/api/LocalContextFlags.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/FileIndex.rst' -> `./docs/source/api/FileIndex.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/Config.rst' -> `./docs/source/api/Config.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/ReferenceSet.rst' -> `./docs/source/api/ReferenceSet.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/GenomicInterval.rst' -> `./docs/source/api/GenomicInterval.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/ParentTool.rst' -> `./docs/source/api/ParentTool.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/Orientation.rst' -> `./docs/source/api/Orientation.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/PbiFile.rst' -> `./docs/source/api/PbiFile.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/Compare.rst' -> `./docs/source/api/Compare.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/SubDataSets.rst' -> `./docs/source/api/SubDataSets.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/ConsensusAlignmentSet.rst' -> `./docs/source/api/ConsensusAlignmentSet.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/AlignmentPrinter.rst' -> `./docs/source/api/AlignmentPrinter.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/BamTagCodec.rst' -> `./docs/source/api/BamTagCodec.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/QualityValue.rst' -> `./docs/source/api/QualityValue.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/NamespaceRegistry.rst' -> `./docs/source/api/NamespaceRegistry.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/PbiFilter.rst' -> `./docs/source/api/PbiFilter.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/PbiFilterQuery.rst' -> `./docs/source/api/PbiFilterQuery.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/QualityValues.rst' -> `./docs/source/api/QualityValues.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/BamHeader.rst' -> `./docs/source/api/BamHeader.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/ExternalResources.rst' -> `./docs/source/api/ExternalResources.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/ContigSet.rst' -> `./docs/source/api/ContigSet.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/PbiBuilder.rst' -> `./docs/source/api/PbiBuilder.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/BamRecordView.rst' -> `./docs/source/api/BamRecordView.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/ConsensusReadSet.rst' -> `./docs/source/api/ConsensusReadSet.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/SamTagCodec.rst' -> `./docs/source/api/SamTagCodec.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/BaiIndexedBamReader.rst' -> `./docs/source/api/BaiIndexedBamReader.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/IndexedFastaReader.rst' -> `./docs/source/api/IndexedFastaReader.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/ZmwQuery.rst' -> `./docs/source/api/ZmwQuery.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/DataSetBase.rst' -> `./docs/source/api/DataSetBase.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/PbiIndexedBamReader.rst' -> `./docs/source/api/PbiIndexedBamReader.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/BamWriter.rst' -> `./docs/source/api/BamWriter.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/IndexResultBlock.rst' -> `./docs/source/api/IndexResultBlock.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/GenomicIntervalQuery.rst' -> `./docs/source/api/GenomicIntervalQuery.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/Frames.rst' -> `./docs/source/api/Frames.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/PbiRawReferenceData.rst' -> `./docs/source/api/PbiRawReferenceData.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/VirtualRegionTypeMap.rst' -> `./docs/source/api/VirtualRegionTypeMap.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/Interval.rst' -> `./docs/source/api/Interval.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/ZmwWhitelistVirtualReader.rst' -> `./docs/source/api/ZmwWhitelistVirtualReader.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/VirtualPolymeraseCompositeReader.rst' -> `./docs/source/api/VirtualPolymeraseCompositeReader.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/PbiFilterCompositeBamReader.rst' -> `./docs/source/api/PbiFilterCompositeBamReader.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/VirtualRegion.rst' -> `./docs/source/api/VirtualRegion.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/Tag.rst' -> `./docs/source/api/Tag.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/PbiRawBarcodeData.rst' -> `./docs/source/api/PbiRawBarcodeData.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/PbiRawBasicData.rst' -> `./docs/source/api/PbiRawBasicData.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/Filters.rst' -> `./docs/source/api/Filters.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/Position.rst' -> `./docs/source/api/Position.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/BarcodeSet.rst' -> `./docs/source/api/BarcodeSet.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/VirtualRegionType.rst' -> `./docs/source/api/VirtualRegionType.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/VirtualPolymeraseBamRecord.rst' -> `./docs/source/api/VirtualPolymeraseBamRecord.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/AlignmentSet.rst' -> `./docs/source/api/AlignmentSet.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/ZmwGroupQuery.rst' -> `./docs/source/api/ZmwGroupQuery.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/PbiFilterTypes.rst' -> `./docs/source/api/PbiFilterTypes.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/NamespaceInfo.rst' -> `./docs/source/api/NamespaceInfo.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/InvalidSequencingChemistryException.rst' -> `./docs/source/api/InvalidSequencingChemistryException.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/SequenceInfo.rst' -> `./docs/source/api/SequenceInfo.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/Extensions.rst' -> `./docs/source/api/Extensions.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/Cigar.rst' -> `./docs/source/api/Cigar.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/PbiRawData.rst' -> `./docs/source/api/PbiRawData.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/BamRecord.rst' -> `./docs/source/api/BamRecord.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/FileIndices.rst' -> `./docs/source/api/FileIndices.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/Accuracy.rst' -> `./docs/source/api/Accuracy.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/ReadGroupInfo.rst' -> `./docs/source/api/ReadGroupInfo.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/GenomicIntervalCompositeBamReader.rst' -> `./docs/source/api/GenomicIntervalCompositeBamReader.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/EntireFileQuery.rst' -> `./docs/source/api/EntireFileQuery.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/BamFile.rst' -> `./docs/source/api/BamFile.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/PbiReferenceEntry.rst' -> `./docs/source/api/PbiReferenceEntry.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/TagCollection.rst' -> `./docs/source/api/TagCollection.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/ExtensionElement.rst' -> `./docs/source/api/ExtensionElement.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/api/ProgramInfo.rst' -> `./docs/source/api/ProgramInfo.rst'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/pacbio-theme/theme.conf' -> `./docs/source/pacbio-theme/theme.conf'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/pacbio-theme/static/pacbio.css' -> `./docs/source/pacbio-theme/static/pacbio.css'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/pacbio-theme/static/headerGradient.jpg' -> `./docs/source/pacbio-theme/static/headerGradient.jpg'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/pacbio-theme/static/pacbioLogo.png' -> `./docs/source/pacbio-theme/static/pacbioLogo.png'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/docs/source/pacbio-theme/static/pygments.css' -> `./docs/source/pacbio-theme/static/pygments.css'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/subprojects/gtest.wrap' -> `./subprojects/gtest.wrap'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/subprojects/htslib.wrap' -> `./subprojects/htslib.wrap'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/subprojects/pbcopper.wrap' -> `./subprojects/pbcopper.wrap'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/subprojects/zlib.wrap' -> `./subprojects/zlib.wrap'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/IndexedFastaReader.cpp' -> `./src/IndexedFastaReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/BamWriter.cpp' -> `./src/BamWriter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/RunMetadataParser.h' -> `./src/RunMetadataParser.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/IndexedFastqBgzfReader.h' -> `./src/IndexedFastqBgzfReader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/FastaSequenceQuery.cpp' -> `./src/FastaSequenceQuery.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/ZmwChunkedFastxTextReader.h' -> `./src/ZmwChunkedFastxTextReader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/IFastqWriter.cpp' -> `./src/IFastqWriter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/CompositeBamReader.cpp' -> `./src/CompositeBamReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/BamRecordTags.cpp' -> `./src/BamRecordTags.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/BamHeader.cpp' -> `./src/BamHeader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/Autovalidate.h' -> `./src/Autovalidate.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/BgzipFastqWriter.cpp' -> `./src/BgzipFastqWriter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/FastaSequence.cpp' -> `./src/FastaSequence.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/SequenceUtils.h' -> `./src/SequenceUtils.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/ErrnoReason.cpp' -> `./src/ErrnoReason.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/ChemistryTable.h' -> `./src/ChemistryTable.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/ErrnoReason.h' -> `./src/ErrnoReason.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/ZmwChunkedFastxBgzfReader.cpp' -> `./src/ZmwChunkedFastxBgzfReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/XmlWriter.h' -> `./src/XmlWriter.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/ZmwChunkedFastxBgzfReader.h' -> `./src/ZmwChunkedFastxBgzfReader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/FastaWriter.cpp' -> `./src/FastaWriter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/ZmwChunkedFastxReaderImpl.cpp' -> `./src/ZmwChunkedFastxReaderImpl.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/PbiBuilderBase.h' -> `./src/PbiBuilderBase.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/VirtualZmwCompositeReader.cpp' -> `./src/VirtualZmwCompositeReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/PbiBuilder.cpp' -> `./src/PbiBuilder.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/DataSetTypes.cpp' -> `./src/DataSetTypes.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/FofnReader.cpp' -> `./src/FofnReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/IndexedFastqTextReader.h' -> `./src/IndexedFastqTextReader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/MemoryUtils.h' -> `./src/MemoryUtils.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/PbiFilterQuery.cpp' -> `./src/PbiFilterQuery.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/PbiFilterTypes.cpp' -> `./src/PbiFilterTypes.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/Config.cpp' -> `./src/Config.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/FofnReader.h' -> `./src/FofnReader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/KSeqReader.cpp' -> `./src/KSeqReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/LibraryGitHash.h.in' -> `./src/LibraryGitHash.h.in'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/BamFile.cpp' -> `./src/BamFile.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/XmlWriter.cpp' -> `./src/XmlWriter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/SamReader.cpp' -> `./src/SamReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/RecordType.cpp' -> `./src/RecordType.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/GenomicIntervalQuery.cpp' -> `./src/GenomicIntervalQuery.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/BamReader.cpp' -> `./src/BamReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/FileProducer.h' -> `./src/FileProducer.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/WhitelistedZmwReadStitcher.cpp' -> `./src/WhitelistedZmwReadStitcher.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/DataSet.cpp' -> `./src/DataSet.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/BgzipFastaWriter.cpp' -> `./src/BgzipFastaWriter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/FileUtils.h' -> `./src/FileUtils.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/ReadGroupInfo.cpp' -> `./src/ReadGroupInfo.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/VirtualZmwCompositeReader.h' -> `./src/VirtualZmwCompositeReader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/DataSetUtils.h' -> `./src/DataSetUtils.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/RunMetadata.cpp' -> `./src/RunMetadata.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/BamFileMerger.cpp' -> `./src/BamFileMerger.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/FileProducer.cpp' -> `./src/FileProducer.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/ZmwTypeMap.cpp' -> `./src/ZmwTypeMap.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/TextFileReader.cpp' -> `./src/TextFileReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/SequenceInfo.cpp' -> `./src/SequenceInfo.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/VirtualZmwReader.h' -> `./src/VirtualZmwReader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/ProgramInfo.cpp' -> `./src/ProgramInfo.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/FastqReader.cpp' -> `./src/FastqReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/DataSetIO.h' -> `./src/DataSetIO.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/VirtualRegionTypeMap.cpp' -> `./src/VirtualRegionTypeMap.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/PbiRawData.cpp' -> `./src/PbiRawData.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/FastqSequence.cpp' -> `./src/FastqSequence.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/IndexedBamWriter.cpp' -> `./src/IndexedBamWriter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/DataSetElement.cpp' -> `./src/DataSetElement.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/VirtualZmwReader.cpp' -> `./src/VirtualZmwReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/TimeUtils.h' -> `./src/TimeUtils.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/ZmwGroupQuery.cpp' -> `./src/ZmwGroupQuery.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/BamRecordImpl.cpp' -> `./src/BamRecordImpl.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/BamRecord.cpp' -> `./src/BamRecord.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/TextFileWriter.cpp' -> `./src/TextFileWriter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/EntireFileQuery.cpp' -> `./src/EntireFileQuery.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/PbiIndexedBamReader.cpp' -> `./src/PbiIndexedBamReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/TagCollection.cpp' -> `./src/TagCollection.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/IFastaWriter.cpp' -> `./src/IFastaWriter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/SamWriter.cpp' -> `./src/SamWriter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/BaiIndexedBamReader.cpp' -> `./src/BaiIndexedBamReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/BgzipWriter.cpp' -> `./src/BgzipWriter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/Version.h' -> `./src/Version.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/Tag.cpp' -> `./src/Tag.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/LibraryVersion.h.in' -> `./src/LibraryVersion.h.in'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/BamRecordView.cpp' -> `./src/BamRecordView.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/StringUtilities.cpp' -> `./src/StringUtilities.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/PbiBuilderBase.cpp' -> `./src/PbiBuilderBase.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/RunMetadataParser.cpp' -> `./src/RunMetadataParser.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/CompositeFastaReader.cpp' -> `./src/CompositeFastaReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/IndexedFastqReader.cpp' -> `./src/IndexedFastqReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/LibraryInfo.cpp' -> `./src/LibraryInfo.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/ValidationException.cpp' -> `./src/ValidationException.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/VirtualRegion.cpp' -> `./src/VirtualRegion.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/Compare.cpp' -> `./src/Compare.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/PbiIndexIO.cpp' -> `./src/PbiIndexIO.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/BamTagCodec.cpp' -> `./src/BamTagCodec.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/ValidationErrors.h' -> `./src/ValidationErrors.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/Pulse2BaseCache.h' -> `./src/Pulse2BaseCache.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/Version.cpp' -> `./src/Version.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/XmlReader.cpp' -> `./src/XmlReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/SamTagCodec.cpp' -> `./src/SamTagCodec.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/IRecordWriter.cpp' -> `./src/IRecordWriter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/MemoryUtils.cpp' -> `./src/MemoryUtils.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/PbiIndexIO.h' -> `./src/PbiIndexIO.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/KSeqReader.h' -> `./src/KSeqReader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/FaiIndex.cpp' -> `./src/FaiIndex.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/ZmwChunkedFastqReader.cpp' -> `./src/ZmwChunkedFastqReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/PbbamGitHash.cpp.in' -> `./src/PbbamGitHash.cpp.in'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/FaiZmwChunker.h' -> `./src/FaiZmwChunker.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/BamRecordTags.h' -> `./src/BamRecordTags.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/VirtualZmwBamRecord.cpp' -> `./src/VirtualZmwBamRecord.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/meson.build' -> `./src/meson.build'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/IndexedFastqReaderImpl.h' -> `./src/IndexedFastqReaderImpl.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/ZmwChunkedFastxTextReader.cpp' -> `./src/ZmwChunkedFastxTextReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/Validator.cpp' -> `./src/Validator.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/PbbamVersion.cpp.in' -> `./src/PbbamVersion.cpp.in'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/FileUtils.cpp' -> `./src/FileUtils.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/DataSetBaseTypes.cpp' -> `./src/DataSetBaseTypes.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/ZmwChunkedFastaReader.cpp' -> `./src/ZmwChunkedFastaReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/ChemistryTable.cpp' -> `./src/ChemistryTable.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/FaiZmwChunker.cpp' -> `./src/FaiZmwChunker.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/PbiFile.cpp' -> `./src/PbiFile.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/ValidationErrors.cpp' -> `./src/ValidationErrors.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/XmlReader.h' -> `./src/XmlReader.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/DataSetXsd.cpp' -> `./src/DataSetXsd.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/FastaReader.cpp' -> `./src/FastaReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/MD5.cpp' -> `./src/MD5.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/FastqWriter.cpp' -> `./src/FastqWriter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/BaiIndexCache.cpp' -> `./src/BaiIndexCache.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/AlignmentPrinter.cpp' -> `./src/AlignmentPrinter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/ZmwChunkedFastxReaderImpl.h' -> `./src/ZmwChunkedFastxReaderImpl.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/VirtualStitching.h' -> `./src/VirtualStitching.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/IndexedFastqTextReader.cpp' -> `./src/IndexedFastqTextReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/IndexedFastqBgzfReader.cpp' -> `./src/IndexedFastqBgzfReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/DataSetIO.cpp' -> `./src/DataSetIO.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/FastaCache.cpp' -> `./src/FastaCache.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/IndexedFastqReaderImpl.cpp' -> `./src/IndexedFastqReaderImpl.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/PbiFilter.cpp' -> `./src/PbiFilter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/ZmwReadStitcher.cpp' -> `./src/ZmwReadStitcher.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/PbbamInternalConfig.h' -> `./src/PbbamInternalConfig.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/FormatUtils.cpp' -> `./src/FormatUtils.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/ZmwQuery.cpp' -> `./src/ZmwQuery.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/CollectionMetadata.cpp' -> `./src/CollectionMetadata.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/pugixml/pugixml.cpp' -> `./src/pugixml/pugixml.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/pugixml/pugixml.hpp' -> `./src/pugixml/pugixml.hpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/pugixml/pugiconfig.hpp' -> `./src/pugixml/pugiconfig.hpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/bed/BedWriter.cpp' -> `./src/bed/BedWriter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/bed/BedReader.cpp' -> `./src/bed/BedReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/vcf/VcfReader.cpp' -> `./src/vcf/VcfReader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/vcf/VcfWriter.cpp' -> `./src/vcf/VcfWriter.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/vcf/VcfQuery.cpp' -> `./src/vcf/VcfQuery.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/vcf/VcfFile.cpp' -> `./src/vcf/VcfFile.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/vcf/VcfFormatException.h' -> `./src/vcf/VcfFormatException.h'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/vcf/VcfHeaderTypes.cpp' -> `./src/vcf/VcfHeaderTypes.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/vcf/VcfFormat.cpp' -> `./src/vcf/VcfFormat.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/vcf/VcfSort.cpp' -> `./src/vcf/VcfSort.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/vcf/VcfHeader.cpp' -> `./src/vcf/VcfHeader.cpp'
`/gnu/store/nxyvl24z3kxwrdyadb20wy14gh4rz2as-pbbam-1.7.0-checkout/src/vcf/VcfVariant.cpp' -> `./src/vcf/VcfVariant.cpp'
phase `unpack' succeeded after 0.2 seconds
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phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
patch-shebang: ./bamboo_build.sh: changing `/usr/bin/env bash' to `/gnu/store/4y5m9lb8k3qkb1y9m02sw9w9a6hacd16-bash-minimal-5.1.8/bin/bash'
patch-shebang: ./scripts/ci/artifact.sh: changing `/usr/bin/env bash' to `/gnu/store/4y5m9lb8k3qkb1y9m02sw9w9a6hacd16-bash-minimal-5.1.8/bin/bash'
patch-shebang: ./scripts/ci/build.sh: changing `/usr/bin/env bash' to `/gnu/store/4y5m9lb8k3qkb1y9m02sw9w9a6hacd16-bash-minimal-5.1.8/bin/bash'
patch-shebang: ./scripts/ci/install.sh: changing `/usr/bin/env bash' to `/gnu/store/4y5m9lb8k3qkb1y9m02sw9w9a6hacd16-bash-minimal-5.1.8/bin/bash'
patch-shebang: ./scripts/ci/setup.sh: changing `/usr/bin/env bash' to `/gnu/store/4y5m9lb8k3qkb1y9m02sw9w9a6hacd16-bash-minimal-5.1.8/bin/bash'
patch-shebang: ./scripts/ci/test.sh: changing `/usr/bin/env bash' to `/gnu/store/4y5m9lb8k3qkb1y9m02sw9w9a6hacd16-bash-minimal-5.1.8/bin/bash'
patch-shebang: ./tests/scripts/cram.py: changing `/usr/bin/env python' to `/gnu/store/j3cx0yaqdpw0mxizp5bayx93pya44dhn-python-wrapper-3.9.9/bin/python'
patch-shebang: ./tests/scripts/generate_data.py: changing `/usr/bin/env python' to `/gnu/store/j3cx0yaqdpw0mxizp5bayx93pya44dhn-python-wrapper-3.9.9/bin/python'
patch-shebang: ./tools/check-eof: changing `/usr/bin/env bash' to `/gnu/store/4y5m9lb8k3qkb1y9m02sw9w9a6hacd16-bash-minimal-5.1.8/bin/bash'
patch-shebang: ./tools/check-formatting: changing `/usr/bin/env bash' to `/gnu/store/4y5m9lb8k3qkb1y9m02sw9w9a6hacd16-bash-minimal-5.1.8/bin/bash'
patch-shebang: ./tools/format-all: changing `/usr/bin/env bash' to `/gnu/store/4y5m9lb8k3qkb1y9m02sw9w9a6hacd16-bash-minimal-5.1.8/bin/bash'
patch-shebang: ./tools/git-clang-format: changing `/usr/bin/env python' to `/gnu/store/j3cx0yaqdpw0mxizp5bayx93pya44dhn-python-wrapper-3.9.9/bin/python'
phase `patch-source-shebangs' succeeded after 0.1 seconds
starting phase `configure'
The Meson build system
Version: 0.60.3
Source dir: /tmp/guix-build-pbbam-1.7.0.drv-0/source
Build dir: /tmp/guix-build-pbbam-1.7.0.drv-0/build
Build type: native build
Project name: PacBioBAM
Project version: 1.7.0
C++ compiler for the host machine: c++ (gcc 10.3.0 "c++ (GCC) 10.3.0")
C++ linker for the host machine: c++ ld.bfd 2.37
Host machine cpu family: x86_64
Host machine cpu: x86_64
Compiler for C++ supports arguments -Wduplicated-cond: YES 
Compiler for C++ supports arguments -Wduplicated-branches: YES 
Compiler for C++ supports arguments -Wlogical-op: YES 
Compiler for C++ supports arguments -Wrestrict: YES 
Compiler for C++ supports arguments -Wnull-dereference: YES 
Compiler for C++ supports arguments -Wuseless-cast: YES 
Compiler for C++ supports arguments -Wdouble-promotion: YES 
Compiler for C++ supports arguments -Wshadow: YES 
Compiler for C++ supports arguments -Wformat=1: YES 
Run-time dependency threads found: YES
Found pkg-config: /gnu/store/2b3blhwbag1ial0dhxw7wh4zjxl0cqpk-pkg-config-0.29.2/bin/pkg-config (0.29.2)
Run-time dependency Boost found: YES 1.77.0 (/gnu/store/f5l9m0dspdjxspdrnvfs4p0rncdhyigf-boost-1.77.0)
Run-time dependency zlib found: YES 1.2.11
Run-time dependency htslib found: YES 1.14
Run-time dependency pbcopper found: YES 1.9.4
Program /gnu/store/n45927m6c879hxdbpj3p63krrwz96rrj-meson-0.60.3/bin/meson found: YES (/gnu/store/n45927m6c879hxdbpj3p63krrwz96rrj-meson-0.60.3/bin/meson)
Configuring PbbamVersion.cpp using configuration
Program /gnu/store/n45927m6c879hxdbpj3p63krrwz96rrj-meson-0.60.3/bin/meson found: YES (/gnu/store/n45927m6c879hxdbpj3p63krrwz96rrj-meson-0.60.3/bin/meson)
Configuring LibraryVersion.h using configuration
Program tools/check-formatting found: YES (/tmp/guix-build-pbbam-1.7.0.drv-0/source/tools/check-formatting)
Program tools/check-eof found: YES (/tmp/guix-build-pbbam-1.7.0.drv-0/source/tools/check-eof)
Program python found: YES (/gnu/store/j3cx0yaqdpw0mxizp5bayx93pya44dhn-python-wrapper-3.9.9/bin/python)
Program cram found: NO
../source/tests/meson.build:6: WARNING: Using bundled cram script
Program scripts/cram.py found: YES (/tmp/guix-build-pbbam-1.7.0.drv-0/source/tests/scripts/cram.py)
Run-time dependency GTest found: YES 1.11.0
Configuring group.fofn using configuration
Configuring PbbamTestData.h using configuration
Configuring synthetic_movie_all.subreadset.xml using configuration
Configuring Bam2SamVersion.h using configuration
Configuring bam2sam.t using configuration
Configuring PbIndexVersion.h using configuration
Configuring PbIndexDumpVersion.h using configuration
Configuring pbindexdump_json.t using configuration
Configuring pbindexdump_cpp.t using configuration
Configuring PbMergeVersion.h using configuration
Configuring pbmerge_pacbio_ordering.t using configuration
Configuring pbmerge_aligned_ordering.t using configuration
Configuring pbmerge_mixed_ordering.t using configuration
Configuring pbmerge_dataset.t using configuration
Configuring pbmerge_fofn.t using configuration
Configuring PbBamifyVersion.h using configuration
Program samtools found: YES (/gnu/store/379y8g7rccm24jngspap2721ajfkpdli-samtools-1.14/bin/samtools)
Configuring pbbamify.t using configuration
Configuring CcsKineticsBystrandifyVersion.h using configuration
Build targets in project: 12

PacBioBAM 1.7.0

  User defined options
    buildtype    : debugoptimized
    prefix       : /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0
    c_link_args  : -Wl,-rpath=/gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/lib
    cpp_link_args: -Wl,-rpath=/gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/lib

Found ninja-1.10.2 at /gnu/store/yqv6h38aa5809l4d8mz078knwf86mb32-ninja-1.10.2/bin/ninja
phase `configure' succeeded after 2.5 seconds
starting phase `patch-generated-file-shebangs'
phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `build'
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[168/220] Compiling C++ object tests/pbbam_test.p/src_test_SamIO.cpp.o
[169/220] Compiling C++ object tests/pbbam_test.p/src_test_TextFileWriter.cpp.o
[170/220] Compiling C++ object tests/pbbam_test.p/src_test_TextFileReader.cpp.o
[171/220] Compiling C++ object tests/pbbam_test.p/src_test_TimeUtils.cpp.o
[172/220] Compiling C++ object tests/pbbam_test.p/src_test_BamRecordClipping.cpp.o
[173/220] Compiling C++ object tests/pbbam_test.p/src_test_VcfFile.cpp.o
[174/220] Compiling C++ object tests/pbbam_test.p/src_test_PbiFilterQuery.cpp.o
[175/220] Compiling C++ object tests/pbbam_test.p/src_test_VcfReader.cpp.o
[176/220] Compiling C++ object tests/pbbam_test.p/src_test_VcfHeader.cpp.o
[177/220] Compiling C++ object tests/pbbam_test.p/src_test_VcfFormat.cpp.o
[178/220] Compiling C++ object tests/pbbam_test.p/src_test_VcfSort.cpp.o
[179/220] Compiling C++ object tests/pbbam_test.p/src_test_Validator.cpp.o
[180/220] Compiling C++ object tests/pbbam_test.p/src_test_VcfQuery.cpp.o
[181/220] Compiling C++ object tests/pbbam_test.p/src_test_VcfVariant.cpp.o
[182/220] Compiling C++ object tests/pbbam_test.p/src_test_VcfWriter.cpp.o
[183/220] Generating tests/pbbam_generate_data with a custom command
Generating test data in /tmp/guix-build-pbbam-1.7.0.drv-0/build/tests 
 - Creating file: truncated.bam...done.
 - Creating file: chunking_emptyfilters.subreadset.xml...done.
 - Creating file: chunking_missingfilters.subreadset.xml...done.
 - Creating file: normal.fa...done.
 - Creating file: normal.fq...done.
 - Creating symlink: aligned.bam...done.
 - Creating symlink: aligned.bam.bai...done.
 - Creating symlink: aligned.bam.pbi...done.
 - Creating symlink: aligned2.bam...done.
 - Creating symlink: aligned2.bam.bai...done.
 - Creating symlink: aligned2.bam.pbi...done.
 - Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.1.subreads.bam...done.
 - Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.1.subreads.bam.pbi...done.
 - Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.2.subreads.bam...done.
 - Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.2.subreads.bam.pbi...done.
 - Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.3.subreads.bam...done.
 - Creating symlink: m150404_101626_42267_c100807920800000001823174110291514_s1_p0.3.subreads.bam.pbi...done.
 - Creating symlink: missing_pbi.bam...done.
[184/220] Compiling C++ object tests/pbbam_test.p/src_test_PbiFilter.cpp.o
[185/220] Compiling C++ object tests/pbbam_test.p/src_test_Tags.cpp.o
[186/220] Compiling C++ object tests/pbbam_test.p/src_test_ZmwChunkedFastxReader.cpp.o
[187/220] Compiling C++ object tools/bam2sam.p/bam2sam_src_main.cpp.o
[188/220] Compiling C++ object tests/zero_byte_check/zero_byte_check.p/main.cpp.o
[189/220] Linking target tests/zero_byte_check/zero_byte_check
[190/220] Compiling C++ object tools/bam2sam.p/bam2sam_src_Bam2SamSettings.cpp.o
[191/220] Compiling C++ object tools/bam2sam.p/bam2sam_src_Bam2SamWorkflow.cpp.o
[192/220] Compiling C++ object tools/pbindex.p/pbindex_src_main.cpp.o
[193/220] Linking target tools/bam2sam
[194/220] Compiling C++ object tests/pbbam_test.p/src_test_WhitelistedZmwReadStitcher.cpp.o
[195/220] Compiling C++ object tools/pbindex.p/pbindex_src_PbIndexSettings.cpp.o
[196/220] Compiling C++ object tests/pbbam_test.p/src_test_ZmwQuery.cpp.o
[197/220] Compiling C++ object tools/pbindex.p/pbindex_src_PbIndexWorkflow.cpp.o
[198/220] Linking target tools/pbindex
[199/220] Compiling C++ object tools/pbindexdump.p/pbindexdump_src_CppFormatter.cpp.o
[200/220] Compiling C++ object tools/pbindexdump.p/pbindexdump_src_PbIndexDumpWorkflow.cpp.o
[201/220] Compiling C++ object tools/pbindexdump.p/pbindexdump_src_PbIndexDumpSettings.cpp.o
[202/220] Compiling C++ object tools/pbindexdump.p/pbindexdump_src_main.cpp.o
[203/220] Compiling C++ object tools/pbmerge.p/pbmerge_src_main.cpp.o
[204/220] Compiling C++ object tests/pbbam_test.p/src_test_Version.cpp.o
[205/220] Compiling C++ object tools/pbmerge.p/pbmerge_src_PbMergeSettings.cpp.o
[206/220] Compiling C++ object tests/pbbam_test.p/src_test_ZmwReadStitcher.cpp.o
[207/220] Compiling C++ object tools/pbbamify.p/pbbamify_src_PbBamifySettings.cpp.o
[208/220] Compiling C++ object tools/pbmerge.p/pbmerge_src_PbMergeWorkflow.cpp.o
[209/220] Compiling C++ object tools/pbbamify.p/pbbamify_src_main.cpp.o
[210/220] Linking target tools/pbmerge
[211/220] Compiling C++ object tools/ccs-kinetics-bystrandify.p/ccs-kinetics-bystrandify_src_main.cpp.o
[212/220] Compiling C++ object tools/pbindexdump.p/pbindexdump_src_JsonFormatter.cpp.o
[213/220] Compiling C++ object tools/pbbamify.p/pbbamify_src_QueryLookup.cpp.o
[214/220] Linking target tools/pbindexdump
[215/220] Compiling C++ object tools/ccs-kinetics-bystrandify.p/ccs-kinetics-bystrandify_src_CcsKineticsBystrandifySettings.cpp.o
[216/220] Compiling C++ object tools/pbbamify.p/pbbamify_src_PbBamifyWorkflow.cpp.o
[217/220] Linking target tools/pbbamify
[218/220] Linking target tests/pbbam_test
[219/220] Compiling C++ object tools/ccs-kinetics-bystrandify.p/ccs-kinetics-bystrandify_src_CcsKineticsBystrandifyWorkflow.cpp.o
[220/220] Linking target tools/ccs-kinetics-bystrandify
phase `build' succeeded after 230.7 seconds
starting phase `check'
ninja: Entering directory `/tmp/guix-build-pbbam-1.7.0.drv-0/build'
[1/7] Generating src/LibraryGitHash.h with a custom command
[2/6] Generating src/PbbamGitHash.cpp with a custom command
1/9 pbbam formatting check             OK              3.83s
2/9 pbbam EOF check                    OK              1.88s
3/9 pbbam gtest unittests              OK              1.99s
4/9 pbbam zero-byte input check        OK              0.15s
5/9 bam2sam_CramTests                  OK              0.17s
6/9 pbindexdump_CramTests              OK              0.18s
7/9 pbmerge_CramTests                  OK              1.88s
8/9 pbbamify_CramTests                 OK              0.33s
9/9 ccs-kinetics-bystrandify_CramTests OK              0.59s


Ok:                 9   
Expected Fail:      0   
Fail:               0   
Unexpected Pass:    0   
Skipped:            0   
Timeout:            0   

Full log written to /tmp/guix-build-pbbam-1.7.0.drv-0/build/meson-logs/testlog.txt
phase `check' succeeded after 12.0 seconds
starting phase `install'
[1/15] Generating tests/pbbam_generate_data with a custom command
[2/15] Generating src/LibraryGitHash.h with a custom command
[3/14] Generating src/PbbamGitHash.cpp with a custom command
[3/4] Installing files.
Installing src/libpbbam.so.1.7.0 to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/lib
Installing tools/bam2sam to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/bin
Installing tools/pbindex to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/bin
Installing tools/pbindexdump to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/bin
Installing tools/pbmerge to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/bin
Installing tools/pbbamify to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/bin
Installing tools/ccs-kinetics-bystrandify to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/bin
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/Accuracy.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/AlignmentPrinter.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/BaiIndexCache.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/BaiIndexedBamReader.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/BamFile.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/BamFileMerger.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/BamHeader.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/BamReader.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/BamRecord.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/BamRecordImpl.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/BamRecordTag.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/BamRecordView.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/BamTagCodec.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/BamWriter.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/BgzipFastaWriter.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/BgzipFastqWriter.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/BgzipWriter.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/Cigar.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/CigarOperation.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/ClipType.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/CollectionMetadata.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/Compare.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/CompositeBamReader.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/CompositeFastaReader.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/Config.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/DataSet.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/DataSetTypes.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/DataSetXsd.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/Deleters.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/EntireFileQuery.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/FaiIndex.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/FastaCache.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/FastaReader.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/FastaSequence.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/FastaSequenceQuery.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/FastaWriter.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/FastqReader.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/FastqSequence.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/FastqWriter.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/FormatUtils.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/FrameEncodingType.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/Frames.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/GenomicInterval.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/GenomicIntervalQuery.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/IFastaWriter.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/IFastqWriter.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/IndexedBamWriter.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/IndexedFastaReader.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/IndexedFastqReader.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/Interval.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/IRecordWriter.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/LibraryInfo.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/LocalContextFlags.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/MD5.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/MoveAppend.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/Orientation.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/PbbamVersion.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/PbiBasicTypes.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/PbiBuilder.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/PbiFile.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/PbiFilter.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/PbiFilterQuery.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/PbiFilterTypes.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/PbiIndexedBamReader.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/PbiRawData.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/Position.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/ProgramInfo.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/PulseBehavior.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/PulseExclusionReason.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/QualityValue.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/QualityValues.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/ReadGroupInfo.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/RecordType.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/RunMetadata.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/SamReader.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/SamTagCodec.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/SamWriter.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/SequenceInfo.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/SNR.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/Strand.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/StringUtilities.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/Tag.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/TagCollection.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/TextFileReader.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/TextFileWriter.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/Validator.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/ZmwGroupQuery.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/ZmwQuery.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/ZmwType.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/ZmwTypeMap.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/bed/BedReader.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/bed
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/bed/BedWriter.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/bed
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/exception/BundleChemistryMappingException.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/exception
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/exception/InvalidSequencingChemistryException.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/exception
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/exception/ValidationException.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/exception
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/internal/Compare.inl to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/internal
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/internal/CompositeBamReader.inl to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/internal
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/internal/DataSetBaseTypes.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/internal
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/internal/DataSetElement.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/internal
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/internal/DataSetElement.inl to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/internal
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/internal/PbiBasicTypes.inl to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/internal
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/internal/PbiFilter.inl to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/internal
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/internal/PbiFilterTypes.inl to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/internal
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/internal/QueryBase.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/internal
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/internal/QueryBase.inl to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/internal
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/vcf/VcfVariant.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/vcf
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/vcf/VcfFile.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/vcf
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/vcf/VcfFormat.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/vcf
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/vcf/VcfHeader.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/vcf
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/vcf/VcfHeaderTypes.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/vcf
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/vcf/VcfReader.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/vcf
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/vcf/VcfSort.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/vcf
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/vcf/VcfQuery.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/vcf
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/vcf/VcfWriter.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/vcf
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/virtual/VirtualPolymeraseBamRecord.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/virtual
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/virtual/VirtualPolymeraseCompositeReader.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/virtual
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/virtual/VirtualPolymeraseReader.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/virtual
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/virtual/VirtualRegion.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/virtual
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/virtual/VirtualRegionType.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/virtual
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/virtual/VirtualRegionTypeMap.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/virtual
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/virtual/VirtualZmwBamRecord.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/virtual
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/virtual/WhitelistedZmwReadStitcher.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/virtual
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/virtual/ZmwReadStitcher.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/virtual
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/source/include/pbbam/virtual/ZmwWhitelistVirtualReader.h to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/include/pbbam/virtual
Installing /tmp/guix-build-pbbam-1.7.0.drv-0/build/meson-private/pbbam.pc to /gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/lib/pkgconfig
phase `install' succeeded after 1.1 seconds
starting phase `patch-shebangs'
phase `patch-shebangs' succeeded after 0.0 seconds
starting phase `strip'
stripping binaries in "/gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/lib" with "strip" and flags ("--strip-debug")
stripping binaries in "/gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/bin" with "strip" and flags ("--strip-debug")
phase `strip' succeeded after 0.1 seconds
starting phase `shrink-runpath'
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/gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/bin/pbindex: stripping RUNPATH to ("/gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/lib" "/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/lib" "/gnu/store/094bbaq6glba86h1d4cj16xhdi6fk2jl-gcc-10.3.0-lib/lib" "/gnu/store/5yrx3pcg5xscjh590fmsi9wqkwdbn1fy-pbcopper-1.9.0-1.ad4143a/lib" "/gnu/store/094bbaq6glba86h1d4cj16xhdi6fk2jl-gcc-10.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/10.3.0/../../..") (removed ("/gnu/store/7v9dkzwphzmmbz16cmkpgvm5dycsm9b1-htslib-1.14/lib" "/gnu/store/8qv5kb2fgm4c3bf70zcg9l6hkf3qzpw9-zlib-1.2.11/lib"))
/gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/bin/pbindexdump: stripping RUNPATH to ("/gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/lib" "/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/lib" "/gnu/store/094bbaq6glba86h1d4cj16xhdi6fk2jl-gcc-10.3.0-lib/lib" "/gnu/store/5yrx3pcg5xscjh590fmsi9wqkwdbn1fy-pbcopper-1.9.0-1.ad4143a/lib" "/gnu/store/094bbaq6glba86h1d4cj16xhdi6fk2jl-gcc-10.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/10.3.0/../../..") (removed ("/gnu/store/7v9dkzwphzmmbz16cmkpgvm5dycsm9b1-htslib-1.14/lib" "/gnu/store/8qv5kb2fgm4c3bf70zcg9l6hkf3qzpw9-zlib-1.2.11/lib"))
/gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/bin/pbmerge: stripping RUNPATH to ("/gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/lib" "/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/lib" "/gnu/store/094bbaq6glba86h1d4cj16xhdi6fk2jl-gcc-10.3.0-lib/lib" "/gnu/store/5yrx3pcg5xscjh590fmsi9wqkwdbn1fy-pbcopper-1.9.0-1.ad4143a/lib" "/gnu/store/094bbaq6glba86h1d4cj16xhdi6fk2jl-gcc-10.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/10.3.0/../../..") (removed ("/gnu/store/7v9dkzwphzmmbz16cmkpgvm5dycsm9b1-htslib-1.14/lib" "/gnu/store/8qv5kb2fgm4c3bf70zcg9l6hkf3qzpw9-zlib-1.2.11/lib"))
phase `shrink-runpath' succeeded after 0.0 seconds
starting phase `validate-runpath'
validating RUNPATH of 1 binaries in "/gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/lib"...
validating RUNPATH of 6 binaries in "/gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/bin"...
phase `validate-runpath' succeeded after 0.0 seconds
starting phase `validate-documentation-location'
phase `validate-documentation-location' succeeded after 0.0 seconds
starting phase `delete-info-dir-file'
phase `delete-info-dir-file' succeeded after 0.0 seconds
starting phase `patch-dot-desktop-files'
phase `patch-dot-desktop-files' succeeded after 0.0 seconds
starting phase `make-dynamic-linker-cache'
created '/gnu/store/vq4nb2b8sq35lib1a8vcc5dp3igmza68-pbbam-1.7.0/etc/ld.so.cache' from 20 library search path entries
phase `make-dynamic-linker-cache' succeeded after 0.7 seconds
starting phase `install-license-files'
installing 0 license files from '.'
phase `install-license-files' succeeded after 0.0 seconds
starting phase `reset-gzip-timestamps'
phase `reset-gzip-timestamps' succeeded after 0.0 seconds
starting phase `compress-documentation'
phase `compress-documentation' succeeded after 0.0 seconds