starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/nv33bg7fx2z1pnr859y1ld6czpgsjrbq-r-minimal-4.3.2/bin:/gnu/store/ns71xxkb3fzr37934bim9l8xiv68kc7w-tar-1.34/bin:/gnu/store/qg9gwla5sgvxf8hc623wp0738klhvh3c-gzip-1.12/bin:/gnu/store/17f7y3p0mhbhamgdpccg00y0kgphbcc6-bzip2-1.0.8/bin:/gnu/store/5clpjcsm37z56dw50kfwafh21p1p104l-file-5.44/bin:/gnu/store/wjgap1k3jafgk0qjnhkrjdvfly7b0wls-diffutils-3.8/bin:/gnu/store/yvdhyjiszsrhk3j3kxvn0rpi3m8dsa5z-patch-2.7.6/bin:/gnu/store/wx2003zzfcc04xs5xj77k3ppnm60r3gf-findutils-4.9.0/bin:/gnu/store/g9m1n9565flslpbm4l1q4k4a33pqzqdd-gawk-5.2.1/bin:/gnu/store/22wcvbqpyyzbccywskskriw4wc9x934m-sed-4.8/bin:/gnu/store/8wbaxwbgagpr7br8mhm4jriq9r23bln4-grep-3.8/bin:/gnu/store/hq06xa3zfv7yzb3i2r43vl0f3ml6qq28-xz-5.2.8/bin:/gnu/store/skcwbg8v0w643w71j9zx25cq0a6dwirs-coreutils-9.1/bin:/gnu/store/3v8fyd0ikmwzmr4g3yxp2ylyqpha06kn-make-4.3/bin:/gnu/store/ldpzhbqzshcyf74hkvgqppzrrdy9r7kv-bash-minimal-5.1.16/bin:/gnu/store/r78m0mqhza5sdqp8mv9wn68xkqks206i-ld-wrapper-0/bin:/gnu/store/34n4pp71cdg844zsfgfnysg5lsjaxqgb-binutils-2.38/bin:/gnu/store/isbd8adggnzdprcd7fxxlck2f5iqamg5-gcc-11.3.0/bin:/gnu/store/0hr9jpczkcgpgqkhf4q4868xd57h5a62-glibc-2.35/bin:/gnu/store/0hr9jpczkcgpgqkhf4q4868xd57h5a62-glibc-2.35/sbin'
environment variable `R_LIBS_SITE' set to `/gnu/store/z0bq3lhq7g52i1547jyfjj61pj0snyik-r-backports-1.4.1/site-library/:/gnu/store/kiw9fhpqhhqqkifklxgn8kh3s4kfrp96-r-bbmisc-1.13/site-library/:/gnu/store/pa61kjnbi9ly2g4l4aayy143vp92qq0d-r-brew-1.0-10/site-library/:/gnu/store/vxcr66gb0b8hd72ad4lbxdlx7rbiwzip-r-checkmate-2.3.1/site-library/:/gnu/store/nfp11nl707vfw55gk1bp5vn7nywsx3dq-r-data-table-1.15.0/site-library/:/gnu/store/jfg07d3rk3x1n4kxd54ilaxwl6wmcdlw-r-dbi-1.2.2/site-library/:/gnu/store/2nb1kyd6ijdxy3pn54a98zd6dvnsnkiv-r-digest-0.6.34/site-library/:/gnu/store/jda04x2chlxsmnfglhgr04k5l09s8frf-r-rsqlite-2.3.5/site-library/:/gnu/store/sfb2kwamhw26vp8aaqqbzpnvz053vxwm-r-sendmailr-1.4-0/site-library/:/gnu/store/s26yd0q13pj5ydwhy6836lcgj9462mzd-r-stringi-1.8.3/site-library/:/gnu/store/b8dknma9w4fajszjdkls3j5bf6f51rwi-r-rlang-1.1.3/site-library/:/gnu/store/dkyh8g81kl10gxmizcmhcm3ibzm7m3f3-r-plogr-0.2.0/site-library/:/gnu/store/5h4md2hqkywa9h3bb8b18rjg011037i3-r-pkgconfig-2.0.3/site-library/:/gnu/store/amlzv7yc77n6flsc6rjjwzfwigibkf0r-r-memoise-2.0.1/site-library/:/gnu/store/i5l74sd2shgvry31xagihm3pr0q4nv5g-r-cpp11-0.4.7/site-library/:/gnu/store/w5r5fnh7rrch789hqng00rmmxg5rjcvi-r-blob-1.2.4/site-library/:/gnu/store/560m9p3s5b1rfw5yz0nrab71a50kkvfb-r-bit64-4.0.5/site-library/:/gnu/store/9c5izmxgj6c6q8a5g14dy902z8ra9s6c-r-base64enc-0.1-3/site-library/:/gnu/store/pjnp6mfwckd2icrigm3p4b950r03jqk9-r-cachem-1.0.8/site-library/:/gnu/store/m8v43kpbn7bv6jkmd9n0ql3j2x0cz3kq-r-vctrs-0.6.5/site-library/:/gnu/store/33y5h4j968yybjs38yz08639jns5qhyd-r-bit-4.0.5/site-library/:/gnu/store/akc8r8931n7cnb57di9d24jjq4arwbx8-r-fastmap-1.1.1/site-library/:/gnu/store/182sfk98wv1vp5rrm836gsa0a6pn0pkn-r-lifecycle-1.0.4/site-library/:/gnu/store/cam3z7xvmiyffkl2zrz694x8q482bwxi-r-glue-1.7.0/site-library/:/gnu/store/0gdsxay8wsnvfmwmlbnypih4vpa4qnyi-r-cli-3.6.2/site-library/'
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/17f7y3p0mhbhamgdpccg00y0kgphbcc6-bzip2-1.0.8/include:/gnu/store/5clpjcsm37z56dw50kfwafh21p1p104l-file-5.44/include:/gnu/store/g9m1n9565flslpbm4l1q4k4a33pqzqdd-gawk-5.2.1/include:/gnu/store/hq06xa3zfv7yzb3i2r43vl0f3ml6qq28-xz-5.2.8/include:/gnu/store/3v8fyd0ikmwzmr4g3yxp2ylyqpha06kn-make-4.3/include:/gnu/store/34n4pp71cdg844zsfgfnysg5lsjaxqgb-binutils-2.38/include:/gnu/store/isbd8adggnzdprcd7fxxlck2f5iqamg5-gcc-11.3.0/include:/gnu/store/0hr9jpczkcgpgqkhf4q4868xd57h5a62-glibc-2.35/include:/gnu/store/6cm8c3968v9nn2f7j3ap67hyxy853p6d-linux-libre-headers-5.15.49/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/17f7y3p0mhbhamgdpccg00y0kgphbcc6-bzip2-1.0.8/include:/gnu/store/5clpjcsm37z56dw50kfwafh21p1p104l-file-5.44/include:/gnu/store/g9m1n9565flslpbm4l1q4k4a33pqzqdd-gawk-5.2.1/include:/gnu/store/hq06xa3zfv7yzb3i2r43vl0f3ml6qq28-xz-5.2.8/include:/gnu/store/3v8fyd0ikmwzmr4g3yxp2ylyqpha06kn-make-4.3/include:/gnu/store/34n4pp71cdg844zsfgfnysg5lsjaxqgb-binutils-2.38/include:/gnu/store/isbd8adggnzdprcd7fxxlck2f5iqamg5-gcc-11.3.0/include/c++:/gnu/store/isbd8adggnzdprcd7fxxlck2f5iqamg5-gcc-11.3.0/include:/gnu/store/0hr9jpczkcgpgqkhf4q4868xd57h5a62-glibc-2.35/include:/gnu/store/6cm8c3968v9nn2f7j3ap67hyxy853p6d-linux-libre-headers-5.15.49/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/nv33bg7fx2z1pnr859y1ld6czpgsjrbq-r-minimal-4.3.2/lib:/gnu/store/17f7y3p0mhbhamgdpccg00y0kgphbcc6-bzip2-1.0.8/lib:/gnu/store/5clpjcsm37z56dw50kfwafh21p1p104l-file-5.44/lib:/gnu/store/g9m1n9565flslpbm4l1q4k4a33pqzqdd-gawk-5.2.1/lib:/gnu/store/hq06xa3zfv7yzb3i2r43vl0f3ml6qq28-xz-5.2.8/lib:/gnu/store/34n4pp71cdg844zsfgfnysg5lsjaxqgb-binutils-2.38/lib:/gnu/store/0hr9jpczkcgpgqkhf4q4868xd57h5a62-glibc-2.35/lib:/gnu/store/d6zg5vlbby1rnvs390y4nvpqipv4hjd4-glibc-2.35-static/lib:/gnu/store/37mccb3vgrmm72lkmnrms2sp0n7qw3d8-glibc-utf8-locales-2.35/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/37mccb3vgrmm72lkmnrms2sp0n7qw3d8-glibc-utf8-locales-2.35/lib/locale'
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'en_US.utf8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
BatchJobs/
BatchJobs/NAMESPACE
BatchJobs/LICENSE
BatchJobs/man/
BatchJobs/man/makeSubmitJobResult.Rd
BatchJobs/man/loadResult.Rd
BatchJobs/man/makeClusterFunctionsSGE.Rd
BatchJobs/man/batchReduce.Rd
BatchJobs/man/updateRegistry.Rd
BatchJobs/man/filterResults.Rd
BatchJobs/man/installPackagesOnSSHWorkers.Rd
BatchJobs/man/getLogFiles.Rd
BatchJobs/man/addRegistryPackages.Rd
BatchJobs/man/checkIds.Rd
BatchJobs/man/makeJob.Rd
BatchJobs/man/setConfig.Rd
BatchJobs/man/cfHandleUnknownSubmitError.Rd
BatchJobs/man/batchExpandGrid.Rd
BatchJobs/man/loadConfig.Rd
BatchJobs/man/copyRequiredJobFiles.Rd
BatchJobs/man/loadResults.Rd
BatchJobs/man/dbCreateJobDefTable.Rd
BatchJobs/man/addRegistrySourceDirs.Rd
BatchJobs/man/makeClusterFunctions.Rd
BatchJobs/man/makeClusterFunctionsOpenLava.Rd
BatchJobs/man/applyJobFunction.Rd
BatchJobs/man/loadExports.Rd
BatchJobs/man/removeRegistry.Rd
BatchJobs/man/killJobs.Rd
BatchJobs/man/sweepRegistry.Rd
BatchJobs/man/dbGetJobs.Rd
BatchJobs/man/reduceResults.Rd
BatchJobs/man/makeClusterFunctionsInteractive.Rd
BatchJobs/man/makeClusterFunctionsTorque.Rd
BatchJobs/man/testJob.Rd
BatchJobs/man/getJobParamDf.Rd
BatchJobs/man/debugSSH.Rd
BatchJobs/man/configuration.Rd
BatchJobs/man/makeRegistry.Rd
BatchJobs/man/removeRegistrySourceFiles.Rd
BatchJobs/man/getJobLocation.Rd
BatchJobs/man/cfReadBrewTemplate.Rd
BatchJobs/man/batchMap.Rd
BatchJobs/man/makeClusterFunctionsMulticore.Rd
BatchJobs/man/batchExport.Rd
BatchJobs/man/submitJobs.Rd
BatchJobs/man/batchUnexport.Rd
BatchJobs/man/getJobInfo.Rd
BatchJobs/man/getJobResources.Rd
BatchJobs/man/loadRegistry.Rd
BatchJobs/man/removeRegistrySourceDirs.Rd
BatchJobs/man/findJobs.Rd
BatchJobs/man/makeClusterFunctionsLSF.Rd
BatchJobs/man/getSSHWorkersInfo.Rd
BatchJobs/man/getConfig.Rd
BatchJobs/man/sanitizePath.Rd
BatchJobs/man/setRegistryPackages.Rd
BatchJobs/man/makeClusterFunctionsSLURM.Rd
BatchJobs/man/addRegistrySourceFiles.Rd
BatchJobs/man/findState.Rd
BatchJobs/man/cfKillBatchJob.Rd
BatchJobs/man/makeClusterFunctionsLocal.Rd
BatchJobs/man/getErrorMessages.Rd
BatchJobs/man/makeClusterFunctionsSSH.Rd
BatchJobs/man/showStatus.Rd
BatchJobs/man/debugMulticore.Rd
BatchJobs/man/batchMapResults.Rd
BatchJobs/man/callFunctionOnSSHWorkers.Rd
BatchJobs/man/showLog.Rd
BatchJobs/man/cfBrewTemplate.Rd
BatchJobs/man/getJobIds.Rd
BatchJobs/man/getResources.Rd
BatchJobs/man/removeRegistryPackages.Rd
BatchJobs/man/getJobNr.Rd
BatchJobs/man/BatchJobs.Rd
BatchJobs/man/showClusterStatus.Rd
BatchJobs/man/setJobFunction.Rd
BatchJobs/man/batchMapQuick.Rd
BatchJobs/man/batchReduceResults.Rd
BatchJobs/man/sourceRegistryFiles.Rd
BatchJobs/man/syncRegistry.Rd
BatchJobs/man/batchQuery.Rd
BatchJobs/man/makeSSHWorker.Rd
BatchJobs/man/getJobs.Rd
BatchJobs/man/getJob.Rd
BatchJobs/man/grepLogs.Rd
BatchJobs/man/setJobNames.Rd
BatchJobs/man/resetJobs.Rd
BatchJobs/man/waitForJobs.Rd
BatchJobs/DESCRIPTION
BatchJobs/tests/
BatchJobs/tests/testthat/
BatchJobs/tests/testthat/test_Registry.R
BatchJobs/tests/testthat/test_batchMap.R
BatchJobs/tests/testthat/test_makeRegistry.R
BatchJobs/tests/testthat/test_findStatus.R
BatchJobs/tests/testthat/test_sourceRegistryFiles.R
BatchJobs/tests/testthat/helpers.R
BatchJobs/tests/testthat/test_batchExpandGrid.R
BatchJobs/tests/testthat/test_loadResults.R
BatchJobs/tests/testthat/test_packages.R
BatchJobs/tests/testthat/test_getJob.R
BatchJobs/tests/testthat/test_doJob.R
BatchJobs/tests/testthat/test_batchMapResults.R
BatchJobs/tests/testthat/test_setJobFunction.R
BatchJobs/tests/testthat/test_batchMapQuick.R
BatchJobs/tests/testthat/test_batchReduceResults.R
BatchJobs/tests/testthat/test_batchReduce.R
BatchJobs/tests/testthat/test_zzz_cleanup.R
BatchJobs/tests/testthat/test_getJobInfo.R
BatchJobs/tests/testthat/test_sanitizePath.R
BatchJobs/tests/testthat/test_getLogFiles.R
BatchJobs/tests/testthat/test_waitForJobs.R
BatchJobs/tests/testthat/test_reduceResults.R
BatchJobs/tests/testthat/test_filterResults.R
BatchJobs/tests/testthat/test_getJobParamDf.R
BatchJobs/tests/testthat/test_submitJobs.R
BatchJobs/tests/testthat/test_sweepRegistry.R
BatchJobs/tests/testthat/test_resources.R
BatchJobs/tests/testthat/test_testJob.R
BatchJobs/tests/testthat/test_database.R
BatchJobs/tests/testthat/test_findJobs.R
BatchJobs/tests/testthat/test_showStatus.R
BatchJobs/tests/testthat/test_export.R
BatchJobs/tests/testthat/test_sqlquotes.R
BatchJobs/tests/testthat/test_resetJobs.R
BatchJobs/tests/run-all.R
BatchJobs/NEWS
BatchJobs/R/
BatchJobs/R/testJob.R
BatchJobs/R/clusterFunctionsHelpers.R
BatchJobs/R/clusterFunctionsOpenLava.R
BatchJobs/R/batchMap.R
BatchJobs/R/showClusterStatus.R
BatchJobs/R/Exports.R
BatchJobs/R/filenames.R
BatchJobs/R/syncRegistry.R
BatchJobs/R/clusterFunctionsMulticore.R
BatchJobs/R/findJobs.R
BatchJobs/R/Worker.R
BatchJobs/R/findStatus.R
BatchJobs/R/zzz.R
BatchJobs/R/reduceResults.R
BatchJobs/R/batchApply.R
BatchJobs/R/helpers.R
BatchJobs/R/batchExpandGrid.R
BatchJobs/R/setJobNames.R
BatchJobs/R/grepLogs.R
BatchJobs/R/updateRegistry.R
BatchJobs/R/checkIdValid.R
BatchJobs/R/getErrorMessages.R
BatchJobs/R/addJob.R
BatchJobs/R/writeFiles.R
BatchJobs/R/Registry.R
BatchJobs/R/submitJobs.R
BatchJobs/R/batchReduce.R
BatchJobs/R/scheduleWorkerJobs.R
BatchJobs/R/debugSSH.R
BatchJobs/R/sweepRegistry.R
BatchJobs/R/clusterFunctionsLocal.R
BatchJobs/R/buffer.R
BatchJobs/R/sendMail.R
BatchJobs/R/Job.R
BatchJobs/R/clusterFunctionsInteractive.R
BatchJobs/R/batchQuery.R
BatchJobs/R/doJob.R
BatchJobs/R/getJob.R
BatchJobs/R/batchMapResults.R
BatchJobs/R/getSSHWorkersInfo.R
BatchJobs/R/debugMulticore.R
BatchJobs/R/checkIds.R
BatchJobs/R/setJobFunction.R
BatchJobs/R/applyJobFunction.R
BatchJobs/R/sanitizePath.R
BatchJobs/R/getLogFiles.R
BatchJobs/R/resetJobs.R
BatchJobs/R/clusterFunctionsSLURM.R
BatchJobs/R/filterResults.R
BatchJobs/R/Resources.R
BatchJobs/R/loadRegistry.R
BatchJobs/R/getJobLocation.R
BatchJobs/R/showLog.R
BatchJobs/R/sourceRegistryFiles.R
BatchJobs/R/waitForJobs.R
BatchJobs/R/getJobInfo.R
BatchJobs/R/clusterFunctionsSSH.R
BatchJobs/R/WorkerLinux.R
BatchJobs/R/clusterFunctions.R
BatchJobs/R/conf.R
BatchJobs/R/loadResults.R
BatchJobs/R/callFunctionOnSSHWorkers.R
BatchJobs/R/installPackagesOnSSHWorkers.R
BatchJobs/R/clusterFunctionsLSF.R
BatchJobs/R/clusterFunctionsSGE.R
BatchJobs/R/Packages.R
BatchJobs/R/getJobParamDf.R
BatchJobs/R/batchMapQuick.R
BatchJobs/R/database.R
BatchJobs/R/showStatus.R
BatchJobs/R/clusterFunctionsTorque.R
BatchJobs/R/killJobs.R
BatchJobs/R/batchReduceResults.R
BatchJobs/R/loadResult.R
BatchJobs/MD5
BatchJobs/inst/
BatchJobs/inst/bin/
BatchJobs/inst/bin/linux-helper
BatchJobs/inst/CITATION
BatchJobs/inst/etc/
BatchJobs/inst/etc/BatchJobs_global_config.R
phase `unpack' succeeded after 0.0 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
patch-shebang: ./inst/bin/linux-helper: changing `/bin/bash' to `/gnu/store/ldpzhbqzshcyf74hkvgqppzrrdy9r7kv-bash-minimal-5.1.16/bin/bash'
phase `patch-source-shebangs' succeeded after 0.0 seconds
starting phase `patch-generated-file-shebangs'
phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `install'
* installing *source* package ‘BatchJobs’ ...
file ‘inst/bin/linux-helper’ has the wrong MD5 checksum
** using staged installation
** R
** inst
** tests
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BatchJobs)
phase `install' succeeded after 11.2 seconds
starting phase `check'
Testing examples for package ‘BatchJobs’
Running specific tests for package ‘BatchJobs’
  Running ‘run-all.R’
phase `check' succeeded after 40.3 seconds
starting phase `patch-shebangs'
phase `patch-shebangs' succeeded after 0.0 seconds
starting phase `strip'
phase `strip' succeeded after 0.0 seconds
starting phase `validate-runpath'
phase `validate-runpath' succeeded after 0.0 seconds
starting phase `validate-documentation-location'
phase `validate-documentation-location' succeeded after 0.0 seconds
starting phase `delete-info-dir-file'
phase `delete-info-dir-file' succeeded after 0.0 seconds
starting phase `patch-dot-desktop-files'
phase `patch-dot-desktop-files' succeeded after 0.0 seconds
starting phase `make-dynamic-linker-cache'
phase `make-dynamic-linker-cache' succeeded after 0.0 seconds
starting phase `install-license-files'
installing 1 license files from '.'
phase `install-license-files' succeeded after 0.0 seconds
starting phase `reset-gzip-timestamps'
phase `reset-gzip-timestamps' succeeded after 0.0 seconds
starting phase `compress-documentation'
phase `compress-documentation' succeeded after 0.0 seconds