starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/hdcadr8rjgcqkdpn2rsaws8drsvbj87a-r-minimal-4.1.2/bin:/gnu/store/6a3ymy9vbaygwsldw8irz33kyy0aw98z-tar-1.34/bin:/gnu/store/rzp5398xvpp7spisgb2790179gz46v8s-gzip-1.10/bin:/gnu/store/4psm3q84k8v07a56sivkh4i5gajsn2py-bzip2-1.0.8/bin:/gnu/store/6jhgwsfdzmlyhaf86bdnqgcha74pxxyv-xz-5.2.5/bin:/gnu/store/g7h73b2wf671mm7wq7zl747grklkzw8f-file-5.39/bin:/gnu/store/h8kf32n95mslqmb03j56r83qlnf85b23-diffutils-3.8/bin:/gnu/store/qs2mw307zfqrr9fngw9akkswnmqn1sca-patch-2.7.6/bin:/gnu/store/mgxsj8hplxszwygmxq6hgcn8pdrk9r4g-findutils-4.8.0/bin:/gnu/store/6170yq2hsfjj0al4sx1z9b593bvg7vd7-gawk-5.1.0/bin:/gnu/store/gr9y4r21rqwy035a2z76i33apgav00iw-sed-4.8/bin:/gnu/store/q5xg9jg7gr38zpifjd425aj63nlsknz2-grep-3.6/bin:/gnu/store/xlah6by49301sbsf6h3skzm6lfi8g9xw-coreutils-8.32/bin:/gnu/store/l8jy7fdsy52wwf4zqwc6ddw66dhsiapq-make-4.3/bin:/gnu/store/r7fs2zhzy8839mr3rmkxg68bwzaf9b9s-bash-minimal-5.1.8/bin:/gnu/store/fz84qfpsm932j8jsgbav5ycv7fvn7pkj-ld-wrapper-0/bin:/gnu/store/34736lj55frwg7byyr1y3n3ip5lskh2f-binutils-2.37/bin:/gnu/store/yrzlcfn77hw34rcjx9dcw2k2ji380vas-gcc-10.3.0/bin:/gnu/store/3jr84ajdz821y480c454pqrswxbhgzlq-glibc-2.33/bin:/gnu/store/3jr84ajdz821y480c454pqrswxbhgzlq-glibc-2.33/sbin'
environment variable `R_LIBS_SITE' unset
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/4psm3q84k8v07a56sivkh4i5gajsn2py-bzip2-1.0.8/include:/gnu/store/6jhgwsfdzmlyhaf86bdnqgcha74pxxyv-xz-5.2.5/include:/gnu/store/g7h73b2wf671mm7wq7zl747grklkzw8f-file-5.39/include:/gnu/store/6170yq2hsfjj0al4sx1z9b593bvg7vd7-gawk-5.1.0/include:/gnu/store/l8jy7fdsy52wwf4zqwc6ddw66dhsiapq-make-4.3/include:/gnu/store/34736lj55frwg7byyr1y3n3ip5lskh2f-binutils-2.37/include:/gnu/store/yrzlcfn77hw34rcjx9dcw2k2ji380vas-gcc-10.3.0/include:/gnu/store/3jr84ajdz821y480c454pqrswxbhgzlq-glibc-2.33/include:/gnu/store/qkg8bndfinrvfs4798lhvchgh7j3sn9s-linux-libre-headers-5.10.35/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/4psm3q84k8v07a56sivkh4i5gajsn2py-bzip2-1.0.8/include:/gnu/store/6jhgwsfdzmlyhaf86bdnqgcha74pxxyv-xz-5.2.5/include:/gnu/store/g7h73b2wf671mm7wq7zl747grklkzw8f-file-5.39/include:/gnu/store/6170yq2hsfjj0al4sx1z9b593bvg7vd7-gawk-5.1.0/include:/gnu/store/l8jy7fdsy52wwf4zqwc6ddw66dhsiapq-make-4.3/include:/gnu/store/34736lj55frwg7byyr1y3n3ip5lskh2f-binutils-2.37/include:/gnu/store/yrzlcfn77hw34rcjx9dcw2k2ji380vas-gcc-10.3.0/include/c++:/gnu/store/yrzlcfn77hw34rcjx9dcw2k2ji380vas-gcc-10.3.0/include:/gnu/store/3jr84ajdz821y480c454pqrswxbhgzlq-glibc-2.33/include:/gnu/store/qkg8bndfinrvfs4798lhvchgh7j3sn9s-linux-libre-headers-5.10.35/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/hdcadr8rjgcqkdpn2rsaws8drsvbj87a-r-minimal-4.1.2/lib:/gnu/store/4psm3q84k8v07a56sivkh4i5gajsn2py-bzip2-1.0.8/lib:/gnu/store/6jhgwsfdzmlyhaf86bdnqgcha74pxxyv-xz-5.2.5/lib:/gnu/store/g7h73b2wf671mm7wq7zl747grklkzw8f-file-5.39/lib:/gnu/store/6170yq2hsfjj0al4sx1z9b593bvg7vd7-gawk-5.1.0/lib:/gnu/store/34736lj55frwg7byyr1y3n3ip5lskh2f-binutils-2.37/lib:/gnu/store/3jr84ajdz821y480c454pqrswxbhgzlq-glibc-2.33/lib:/gnu/store/y7dwdckw1rzmhqfc8g6cgi71afmdql0z-glibc-2.33-static/lib:/gnu/store/k35qrb0himksbl5qh44sw66vmx3gxmkr-glibc-utf8-locales-2.33/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/k35qrb0himksbl5qh44sw66vmx3gxmkr-glibc-utf8-locales-2.33/lib/locale'
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'en_US.utf8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
HSMMSingleCell/DESCRIPTION
HSMMSingleCell/NAMESPACE
HSMMSingleCell/R/
HSMMSingleCell/R/HSMMSingleCell.R
HSMMSingleCell/data/
HSMMSingleCell/data/HSMM_expr_matrix.rda
HSMMSingleCell/data/HSMM_gene_annotation.rda
HSMMSingleCell/data/HSMM_sample_sheet.rda
HSMMSingleCell/data/datalist
HSMMSingleCell/external_data_store.txt
HSMMSingleCell/man/
HSMMSingleCell/man/HSMM.Rd
HSMMSingleCell/man/HSMMSingleCell-package.Rd
HSMMSingleCell/vignettes/
HSMMSingleCell/vignettes/HSMMSingleCell-vignette-concordance.tex
HSMMSingleCell/vignettes/HSMMSingleCell-vignette.Rnw
HSMMSingleCell/vignettes/HSMMSingleCell-vignette.bbl
HSMMSingleCell/vignettes/HSMMSingleCell-vignette.log
HSMMSingleCell/vignettes/HSMMSingleCell-vignette.pdf
HSMMSingleCell/vignettes/HSMMSingleCell-vignette.synctex.gz
HSMMSingleCell/vignettes/HSMMSingleCell-vignette.tex
HSMMSingleCell/vignettes/HSMMSingleCell-vignette.toc
HSMMSingleCell/vignettes/monocle_alg.bib
HSMMSingleCell/vignettes/whbiocvignette.sty
phase `unpack' succeeded after 0.2 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
phase `patch-source-shebangs' succeeded after 0.0 seconds
starting phase `patch-generated-file-shebangs'
phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `install'
* installing *source* package ‘HSMMSingleCell’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HSMMSingleCell)
phase `install' succeeded after 2.1 seconds
starting phase `check'
phase `check' succeeded after 0.0 seconds
starting phase `patch-shebangs'
phase `patch-shebangs' succeeded after 0.0 seconds
starting phase `strip'
phase `strip' succeeded after 0.0 seconds
starting phase `validate-runpath'
phase `validate-runpath' succeeded after 0.0 seconds
starting phase `validate-documentation-location'
phase `validate-documentation-location' succeeded after 0.0 seconds
starting phase `delete-info-dir-file'
phase `delete-info-dir-file' succeeded after 0.0 seconds
starting phase `patch-dot-desktop-files'
phase `patch-dot-desktop-files' succeeded after 0.0 seconds
starting phase `make-dynamic-linker-cache'
phase `make-dynamic-linker-cache' succeeded after 0.0 seconds
starting phase `install-license-files'
installing 0 license files from '.'
phase `install-license-files' succeeded after 0.0 seconds
starting phase `reset-gzip-timestamps'
phase `reset-gzip-timestamps' succeeded after 0.0 seconds
starting phase `compress-documentation'
phase `compress-documentation' succeeded after 0.0 seconds