starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/bin:/gnu/store/v6f44zccwh9z5zk3pjlywjybbi8n2hjh-tar-1.32/bin:/gnu/store/ncydgq2znms5n1d2k5yqshhf58nsixwv-gzip-1.10/bin:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/bin:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/bin:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/bin:/gnu/store/n4n560pfvvw50a9369axw5vj5rrqfj1n-diffutils-3.7/bin:/gnu/store/cd5qf3kcnlq35p9k392pjdpdzpsnds70-patch-2.7.6/bin:/gnu/store/hic7snhayfl7m6cpfqqr73nmm19bpqkg-findutils-4.7.0/bin:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/bin:/gnu/store/ishk7fswcs4gkwcp8mh788z4mvvl9bxh-sed-4.8/bin:/gnu/store/bhs4rj58v8j1narb2454raan2ps38xd8-grep-3.4/bin:/gnu/store/57xj5gcy1jbl9ai2lnrqnpr0dald9i65-coreutils-8.32/bin:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/bin:/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin:/gnu/store/mpa04aq8lblbcviyxywxcsb1zbi0mf39-ld-wrapper-0/bin:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/bin:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/bin:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/sbin:/gnu/store/k9wmrk5m91599lk8gd4rc7h4df642qw0-curl-7.74.0/bin'
environment variable `R_LIBS_SITE' set to `/gnu/store/qh6zfmrmb7srqb1h9hgm64gbhp7cm4fg-r-biocgenerics-0.36.1/site-library/:/gnu/store/4299v5359zqkjwsmlldnj8sjjjsdc4zi-r-biostrings-2.58.0/site-library/:/gnu/store/f4dwcz12gdz2xzxr55wz0xnyqq4sm30f-r-genomeinfodb-1.26.7/site-library/:/gnu/store/6sb85f0rv9v0bnqqxfzsn4x42k38bclm-r-genomicranges-1.42.0/site-library/:/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/:/gnu/store/akd4jzjjwfmvr72vannj8aqdycgiw2zh-r-matrixstats-0.58.0/site-library/:/gnu/store/ad87j9w6kv679sj71dyv3vdxwr5yi5ia-r-rsamtools-2.6.0/site-library/:/gnu/store/ljjsmsdjmn0p9nx45fyfnxdrijiayj2q-r-rtracklayer-1.50.0/site-library/:/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/:/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/:/gnu/store/086qgd6pmyrgg3w8q65iyilxc5i8mzvw-r-crayon-1.4.1/site-library/:/gnu/store/ngmpbsrslskyihfi4p64wk618j1cc1yz-r-rcurl-1.95-0.1.2/site-library/:/gnu/store/raqrx9blyby4ldgsa8ay679kdm4j6i53-r-genomeinfodbdata-1.2.0/site-library/:/gnu/store/q12404513kffgf7x5w6p9x263xccng20-r-rhtslib-1.22.0/site-library/:/gnu/store/8jq1r3kfby23b4afadwfazal6in3saaw-r-bitops-1.0-7/site-library/:/gnu/store/875k6jgk7jf4ill2q30rb88lpqg2xdf1-r-biocparallel-1.24.1/site-library/:/gnu/store/aq46zkk2mjy3b96876zk4pmbcr8jjl33-r-zlibbioc-1.36.0/site-library/:/gnu/store/5w69bknn3ydfz3jnv2wxd2b4nsj612b9-r-xml-3.99-0.6/site-library/:/gnu/store/jvv6h2a578a9a46d129sf7jbfixfs55m-r-genomicalignments-1.26.0/site-library/:/gnu/store/dkh819jzf86ljdm0xf2377zwapd8sg6i-r-bh-1.75.0-0/site-library/:/gnu/store/qpvfkj7bls7jrslk1zxdvwf5hvswk6dw-r-snow-0.4-3/site-library/:/gnu/store/slwl3ygc8wxvzv1q4rp0pvx74k9j4h3a-r-futile-logger-1.4.3/site-library/:/gnu/store/mlsl0j769n3kmcs3ydc90n32snmj6jcb-r-summarizedexperiment-1.20.0/site-library/:/gnu/store/ldbi2cnikqpvmq7snd2l5lsi9h7mvgj2-r-lambda-r-1.2.4/site-library/:/gnu/store/8616cafavm8c1gjam26vg0v7x5cxrr21-r-futile-options-1.0.1/site-library/:/gnu/store/1wj99kiwyhqj0r0lhl9g0ylckxa0ql76-r-matrixgenerics-1.2.1/site-library/:/gnu/store/sgkc3h839wijzlviiw425fxbjyq934hn-r-matrix-1.3-2/site-library/:/gnu/store/3waa589avdampx69ig0n7ddx3pm9hkr0-r-delayedarray-0.16.3/site-library/:/gnu/store/f8p8ljfd7hdiarqya52ixiq57kpv6f7d-r-biobase-2.50.0/site-library/:/gnu/store/q61g7q8jf1kggzpbxnpk8m5nyb6a01li-r-formatr-1.9/site-library/:/gnu/store/8gy419z0s3l4hbnkza4afpivp1434zmr-r-lattice-0.20-44/site-library/'
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/include:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/include:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/include:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/include:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/include:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/include:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/include:/gnu/store/gfapkk5c6hvl1d94m4sqnhn7f9l5gqyh-linux-libre-headers-5.4.20/include:/gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/include:/gnu/store/k9wmrk5m91599lk8gd4rc7h4df642qw0-curl-7.74.0/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/include:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/include:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/include:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/include:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/include:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/include:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include/c++:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/include:/gnu/store/gfapkk5c6hvl1d94m4sqnhn7f9l5gqyh-linux-libre-headers-5.4.20/include:/gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/include:/gnu/store/k9wmrk5m91599lk8gd4rc7h4df642qw0-curl-7.74.0/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/lib:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/lib:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/lib:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/lib:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/lib:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/lib:/gnu/store/s3dcqzwqaakv1yx37by9chksdbkgih17-glibc-2.31-static/lib:/gnu/store/hwcky7446s952w0mwchhmm211ll07zrq-glibc-utf8-locales-2.31/lib:/gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/lib:/gnu/store/k9wmrk5m91599lk8gd4rc7h4df642qw0-curl-7.74.0/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/hwcky7446s952w0mwchhmm211ll07zrq-glibc-utf8-locales-2.31/lib/locale'
environment variable `SSL_CERT_DIR' unset
environment variable `SSL_CERT_FILE' unset
environment variable `CURL_CA_BUNDLE' unset
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'en_US.utf8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
BSgenome/DESCRIPTION
BSgenome/NAMESPACE
BSgenome/NEWS
BSgenome/R/
BSgenome/R/BSgenome-class.R
BSgenome/R/BSgenome-utils.R
BSgenome/R/BSgenomeForge.R
BSgenome/R/BSgenomeViews-class.R
BSgenome/R/InjectSNPsHandler-class.R
BSgenome/R/ODLT_SNPlocs-class.R
BSgenome/R/OldFashionSNPlocs-class.R
BSgenome/R/OnDiskLongTable-class.R
BSgenome/R/OnDiskLongTable_old-class.R
BSgenome/R/OnDiskNamedSequences-class.R
BSgenome/R/SNPlocs-class.R
BSgenome/R/XtraSNPlocs-class.R
BSgenome/R/available.genomes.R
BSgenome/R/bsapply.R
BSgenome/R/export-methods.R
BSgenome/R/extractAt-methods.R
BSgenome/R/getSeq-methods.R
BSgenome/R/injectSNPs.R
BSgenome/R/utils.R
BSgenome/README.md
BSgenome/TODO
BSgenome/build/
BSgenome/build/vignette.rds
BSgenome/inst/
BSgenome/inst/doc/
BSgenome/inst/doc/BSgenomeForge.R
BSgenome/inst/doc/BSgenomeForge.Rnw
BSgenome/inst/doc/BSgenomeForge.pdf
BSgenome/inst/doc/GenomeSearching.R
BSgenome/inst/doc/GenomeSearching.Rnw
BSgenome/inst/doc/GenomeSearching.pdf
BSgenome/inst/extdata/
BSgenome/inst/extdata/GentlemanLab/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-tools/NOTES.TXT
BSgenome/inst/extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-tools/splitbigfasta.sh
BSgenome/inst/extdata/GentlemanLab/BSgenome.Amellifera.UCSC.apiMel2-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Amellifera.UCSC.apiMel2.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.04232008-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR10.1-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR10.1-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR10.1-tools/splitbigfasta.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR9-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR9-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR9-tools/NOTES.TXT
BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau3-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau3.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau4-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau4.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6-tools/splitbigfasta.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau8-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau9-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau9-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau9-tools/sort_bosTau9.2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce10-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce11-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce2-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce6-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam2-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam2.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3-tools/splitbigfasta.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Cjacchus.UCSC.calJac3-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Cjacchus.UCSC.calJac3-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Cjacchus.UCSC.calJac3-tools/sort_calJac3.2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm2-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm2.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm3-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm3.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Dmelanogaster.UCSC.dm6-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer10-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer10-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer10-tools/sort_danRer10.2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer11-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer11-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer11-tools/sort_danRer11.2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-tools/NOTES.TXT
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-tools/splitbigfasta.sh
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-tools/NOTES.TXT
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-tools/splitbigfasta.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-tools/NOTES.TXT
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-tools/splitbigfasta.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Dvirilis.Ensembl.dvircaf1-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ecoli.NCBI.20080805-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Gaculeatus.UCSC.gasAcu1-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Gaculeatus.UCSC.gasAcu1.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal3-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal3.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4-tools/splitbigfasta.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal4.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal5-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal5-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal5-tools/sort_galGal5.2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal6-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal6-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ggallus.UCSC.galGal6-tools/sort_galGal6.2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Gmellonella.NCBI.ASM364042v2-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Gmellonella.NCBI.ASM364042v2-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Gmellonella.NCBI.ASM364042v2-tools/fasta_to_sorted_2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.NCBI.GRCh38-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.NCBI.GRCh38-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.NCBI.GRCh38-tools/splitbigfasta.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg17-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg17.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg18-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg18.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg19-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg19.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg38-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg38.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mdomestica.UCSC.monDom5-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mdomestica.UCSC.monDom5-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mdomestica.UCSC.monDom5-tools/sort_monDom5.2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mfascicularis.NCBI.5.0-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mfascicularis.NCBI.5.0-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mfascicularis.NCBI.5.0-tools/fasta_to_sorted2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mfuro.UCSC.musFur1-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac10-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac10-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac10-tools/sort_rheMac10.2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac2-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac2.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3-tools/splitbigfasta.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac3.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac8-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac8-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac8-tools/sort_rheMac8.2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm10-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm10.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm8-seed
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BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm9-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Mmusculus.UCSC.mm9.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ppaniscus.UCSC.panPan1-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ppaniscus.UCSC.panPan2-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro2-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro2.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3-tools/splitbigfasta.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro3.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro5-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro5-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro5-tools/sort_panTro5.2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro6-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro6-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Ptroglodytes.UCSC.panTro6-tools/sort_panTro6.2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn4-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn4.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5-tools/splitbigfasta.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn5.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Rnorvegicus.UCSC.rn6-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Scerevisiae.UCSC.sacCer1-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Scerevisiae.UCSC.sacCer2-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Scerevisiae.UCSC.sacCer3-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr11-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr11-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr11-tools/sort_susScr11.2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3-tools/splitbigfasta.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.Sscrofa.UCSC.susScr3.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut1-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut1.masked-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut2-seed
BSgenome/inst/extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut2-tools/
BSgenome/inst/extdata/GentlemanLab/BSgenome.Tguttata.UCSC.taeGut2-tools/sort_taeGut2.2bit.R
BSgenome/inst/extdata/GentlemanLab/BSgenome.influenza.NCBI.20100628-seed
BSgenome/inst/extdata/GentlemanLab/ForgeAll.R
BSgenome/inst/extdata/GentlemanLab/bump_seed_version.sh
BSgenome/inst/extdata/ce2chrM.fa.gz
BSgenome/inst/extdata/ce2chrX.fa.gz
BSgenome/inst/extdata/ce2dict0.fa
BSgenome/inst/pkgtemplates/
BSgenome/inst/pkgtemplates/BSgenome_datapkg/
BSgenome/inst/pkgtemplates/BSgenome_datapkg/DESCRIPTION
BSgenome/inst/pkgtemplates/BSgenome_datapkg/NAMESPACE
BSgenome/inst/pkgtemplates/BSgenome_datapkg/R/
BSgenome/inst/pkgtemplates/BSgenome_datapkg/R/zzz.R
BSgenome/inst/pkgtemplates/BSgenome_datapkg/inst/
BSgenome/inst/pkgtemplates/BSgenome_datapkg/inst/extdata/
BSgenome/inst/pkgtemplates/BSgenome_datapkg/man/
BSgenome/inst/pkgtemplates/BSgenome_datapkg/man/package.Rd
BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/
BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/DESCRIPTION
BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/NAMESPACE
BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/R/
BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/R/zzz.R
BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/inst/
BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/inst/extdata/
BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/man/
BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/man/package.Rd
BSgenome/man/
BSgenome/man/BSParams-class.Rd
BSgenome/man/BSgenome-class.Rd
BSgenome/man/BSgenome-utils.Rd
BSgenome/man/BSgenomeForge.Rd
BSgenome/man/BSgenomeViews-class.Rd
BSgenome/man/SNPlocs-class.Rd
BSgenome/man/XtraSNPlocs-class.Rd
BSgenome/man/available.genomes.Rd
BSgenome/man/bsapply.Rd
BSgenome/man/export-methods.Rd
BSgenome/man/getSeq-methods.Rd
BSgenome/man/injectSNPs.Rd
BSgenome/vignettes/
BSgenome/vignettes/BSgenomeForge.Rnw
BSgenome/vignettes/GenomeSearching.Rnw
phase `unpack' succeeded after 0.1 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
patch-shebang: ./inst/extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-tools/splitbigfasta.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash'
patch-shebang: ./inst/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-tools/splitbigfasta.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash'
patch-shebang: ./inst/extdata/GentlemanLab/bump_seed_version.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash'
phase `patch-source-shebangs' succeeded after 0.1 seconds
starting phase `patch-generated-file-shebangs'
phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `install'
* installing *source* package ‘BSgenome’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BSgenome)
phase `install' succeeded after 61.3 seconds
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starting phase `strip'
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starting phase `delete-info-dir-file'
phase `delete-info-dir-file' succeeded after 0.0 seconds
starting phase `patch-dot-desktop-files'
phase `patch-dot-desktop-files' succeeded after 0.0 seconds
starting phase `install-license-files'
installing 0 license files from '.'
phase `install-license-files' succeeded after 0.0 seconds
starting phase `reset-gzip-timestamps'
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starting phase `compress-documentation'
phase `compress-documentation' succeeded after 0.0 seconds