starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin:/gnu/store/pbs0gsb14w85ix7c5s0d894ywxbrgj0k-gsl-2.7/bin:/gnu/store/imz1fhpcg603a4ny7k9yla72d6y302aw-hdf5-1.10.7/bin:/gnu/store/akfnv4b78fzwikdp4jld819vh389i8z2-python-cython-0.29.24/bin:/gnu/store/5f92vxq7g120bpns2nxzi1rgwd9y2xj3-python-numpy-1.21.6/bin:/gnu/store/kchyiykalfi0y003w2y722bkf0nl04y5-python-tables-3.6.1/bin:/gnu/store/g2ajyl8xk9aarxrgjbng2hkj3qm2v0z2-tar-1.34/bin:/gnu/store/iixwcv3k49ks1rf34pjgfzmzyhhgwng3-gzip-1.10/bin:/gnu/store/s3hl12jxz9ybs7nsy7kq7ybzz7qnzmsg-bzip2-1.0.8/bin:/gnu/store/c8isj4jq6knv0icfgr43di6q3nvdzkx7-xz-5.2.5/bin:/gnu/store/4ic6244i3ca4b4rxc2wnrgllsidyishv-file-5.39/bin:/gnu/store/ahmmvw21p11ik80lg1f953y7fd8bqkjm-diffutils-3.8/bin:/gnu/store/z39hnrwds1dgcbpfgj8dnv2cngjb2xbl-patch-2.7.6/bin:/gnu/store/39rsx3nl4c31952jybbjb8d6idr5hx7r-findutils-4.8.0/bin:/gnu/store/690qz3fg334dpwn3pn6k59n4wc943p2b-gawk-5.1.0/bin:/gnu/store/wxgv6i8g0p24q5gcyzd0yr07s8kn9680-sed-4.8/bin:/gnu/store/xjwp2hsd9256icjjybfrmznppjicywf6-grep-3.6/bin:/gnu/store/d251rfgc9nm2clzffzhgiipdvfvzkvwi-coreutils-8.32/bin:/gnu/store/55cbpsi18mahg131nmiya6km5b4mscfa-make-4.3/bin:/gnu/store/4y5m9lb8k3qkb1y9m02sw9w9a6hacd16-bash-minimal-5.1.8/bin:/gnu/store/s2pg5k98fl2g2szg9dykxyd9zl3xihv9-ld-wrapper-0/bin:/gnu/store/rc781v4k0drhaqn90xfwwpspki5x0bvf-binutils-2.37/bin:/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/bin:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/bin:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/sbin:/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/bin:/gnu/store/mwbawcjdsmg13jjw0315z99sp88n4rd4-python-wxpython-4.0.7.post1/bin:/gnu/store/zlg7s86frmvbyf27627h0lgy54lwrkl9-python-fonttools-4.28.5/bin:/gnu/store/g73j8zgr13dnxrfggwx0z6bpadbz2ymq-gobject-introspection-1.66.1/bin'
environment variable `GUIX_PYTHONPATH' set to `/gnu/store/akfnv4b78fzwikdp4jld819vh389i8z2-python-cython-0.29.24/lib/python3.9/site-packages:/gnu/store/5f92vxq7g120bpns2nxzi1rgwd9y2xj3-python-numpy-1.21.6/lib/python3.9/site-packages:/gnu/store/j2nad0dk0385jg91a4jvghjn57p6z8lx-python-pycurl-7.43.0.5/lib/python3.9/site-packages:/gnu/store/x0281pavd14z9rnvs7mpdwpxi3nyb9qh-python-pyzmq-22.3.0/lib/python3.9/site-packages:/gnu/store/x5lh9v171m43c370g64qxrky8nizl5xr-python-scipy-1.8.0/lib/python3.9/site-packages:/gnu/store/kchyiykalfi0y003w2y722bkf0nl04y5-python-tables-3.6.1/lib/python3.9/site-packages:/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/lib/python3.9/site-packages:/gnu/store/kw41zfr5s3ay2xva287lcpgzqa7bhvh1-python-pyparsing-3.0.6/lib/python3.9/site-packages:/gnu/store/pn730yy9x9kkf4zwsqlwnm3rl984jw29-python-matplotlib-3.5.2/lib/python3.9/site-packages:/gnu/store/bkbggdglf06i51j4ll80wr8a8wxs9hp2-python-numexpr-2.7.3/lib/python3.9/site-packages:/gnu/store/mwbawcjdsmg13jjw0315z99sp88n4rd4-python-wxpython-4.0.7.post1/lib/python3.9/site-packages:/gnu/store/akhfk7wq2i8bkxlv8i6ra10cy0b7iq6l-python-3.9.9-tk/lib/python3.9/site-packages:/gnu/store/3bjjwwwbniv92j0cg8kp1h5k2q3c42n3-python-six-1.16.0/lib/python3.9/site-packages:/gnu/store/wkrmii2s5a5l1wliz9cwj7qgkgiqm6jn-python-pytz-2022.1/lib/python3.9/site-packages:/gnu/store/iffaxh1y899wdh62f14wbmrnvvcq169j-python-pygobject-3.40.1/lib/python3.9/site-packages:/gnu/store/plcn48kpwwd7id02i38d6sl5j5lz569c-python-pillow-9.0.0/lib/python3.9/site-packages:/gnu/store/kxlnph6hn0clsqbbf7b0f61hw51ak2g2-python-packaging-21.3/lib/python3.9/site-packages:/gnu/store/81vgc9yqfwaz42yfqw8v5fk2xivw67jx-python-kiwisolver-1.0.1/lib/python3.9/site-packages:/gnu/store/zlg7s86frmvbyf27627h0lgy54lwrkl9-python-fonttools-4.28.5/lib/python3.9/site-packages:/gnu/store/xs8pxa4rr2zkb2hr5nhkxr7ijxxgmqna-python-dateutil-2.8.2/lib/python3.9/site-packages:/gnu/store/rlm066wjz6mk1771yl2fva6scpwfp04x-python-cycler-0.10.0/lib/python3.9/site-packages:/gnu/store/sgs95j3njwkkw752iy4i8rycn37cs69z-python-certifi-2021.10.8/lib/python3.9/site-packages:/gnu/store/6zsi1abj9sj5ydmrajgds6bk7kkym19n-python-cairocffi-1.2.0/lib/python3.9/site-packages:/gnu/store/wpms391jrhhs74smgxkpvzdz2n1ny7wl-python-olefile-0.46/lib/python3.9/site-packages:/gnu/store/iz2yzb63glbc0llfxh9dblyprp3a7vzb-python-xcffib-0.11.1/lib/python3.9/site-packages:/gnu/store/4hzdy7w8mnxpi3054m46xd00ixqfhb6g-python-cffi-1.14.4/lib/python3.9/site-packages:/gnu/store/1mdg7xc4zx0i9s0kd0hwwq98bgab51s1-python-pycparser-2.21/lib/python3.9/site-packages'
environment variable `PYTHONTZPATH' unset
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/hm6dlgzkqz33fbiba07jjh8yzdikn7pp-boost-1.77.0/include:/gnu/store/ryhsn2ipbg35g3jnjxf867flz4x79xkx-c-blosc-1.21.1/include:/gnu/store/pbs0gsb14w85ix7c5s0d894ywxbrgj0k-gsl-2.7/include:/gnu/store/imz1fhpcg603a4ny7k9yla72d6y302aw-hdf5-1.10.7/include:/gnu/store/f0ymak6hcipdq7ck7978yprad5mwpafn-hdf5-blosc-1.0.0/include:/gnu/store/8qv5kb2fgm4c3bf70zcg9l6hkf3qzpw9-zlib-1.2.11/include:/gnu/store/s3hl12jxz9ybs7nsy7kq7ybzz7qnzmsg-bzip2-1.0.8/include:/gnu/store/c8isj4jq6knv0icfgr43di6q3nvdzkx7-xz-5.2.5/include:/gnu/store/4ic6244i3ca4b4rxc2wnrgllsidyishv-file-5.39/include:/gnu/store/690qz3fg334dpwn3pn6k59n4wc943p2b-gawk-5.1.0/include:/gnu/store/55cbpsi18mahg131nmiya6km5b4mscfa-make-4.3/include:/gnu/store/rc781v4k0drhaqn90xfwwpspki5x0bvf-binutils-2.37/include:/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/include:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/include:/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include:/gnu/store/6mjww4iz4xdan74d5bbjfh7il8rngfkk-linux-libre-headers-5.10.35/include:/gnu/store/iffaxh1y899wdh62f14wbmrnvvcq169j-python-pygobject-3.40.1/include:/gnu/store/g73j8zgr13dnxrfggwx0z6bpadbz2ymq-gobject-introspection-1.66.1/include:/gnu/store/wgqhlc12qvlwiklam7hz2r311fdcqfim-libffi-3.3/include:/gnu/store/96srhmpmxa20wmsck95g3iq4hb3lz4a0-glib-2.70.2/include:/gnu/store/5583c2za2jsn9g6az79rnksgvigwnsk7-util-linux-2.37.2-lib/include:/gnu/store/di5bqb45hi5lvp2q08hlxqjdcl9phjb1-pcre-8.45/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/hm6dlgzkqz33fbiba07jjh8yzdikn7pp-boost-1.77.0/include:/gnu/store/ryhsn2ipbg35g3jnjxf867flz4x79xkx-c-blosc-1.21.1/include:/gnu/store/pbs0gsb14w85ix7c5s0d894ywxbrgj0k-gsl-2.7/include:/gnu/store/imz1fhpcg603a4ny7k9yla72d6y302aw-hdf5-1.10.7/include:/gnu/store/f0ymak6hcipdq7ck7978yprad5mwpafn-hdf5-blosc-1.0.0/include:/gnu/store/8qv5kb2fgm4c3bf70zcg9l6hkf3qzpw9-zlib-1.2.11/include:/gnu/store/s3hl12jxz9ybs7nsy7kq7ybzz7qnzmsg-bzip2-1.0.8/include:/gnu/store/c8isj4jq6knv0icfgr43di6q3nvdzkx7-xz-5.2.5/include:/gnu/store/4ic6244i3ca4b4rxc2wnrgllsidyishv-file-5.39/include:/gnu/store/690qz3fg334dpwn3pn6k59n4wc943p2b-gawk-5.1.0/include:/gnu/store/55cbpsi18mahg131nmiya6km5b4mscfa-make-4.3/include:/gnu/store/rc781v4k0drhaqn90xfwwpspki5x0bvf-binutils-2.37/include:/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/include/c++:/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/include:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/include:/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include:/gnu/store/6mjww4iz4xdan74d5bbjfh7il8rngfkk-linux-libre-headers-5.10.35/include:/gnu/store/iffaxh1y899wdh62f14wbmrnvvcq169j-python-pygobject-3.40.1/include:/gnu/store/g73j8zgr13dnxrfggwx0z6bpadbz2ymq-gobject-introspection-1.66.1/include:/gnu/store/wgqhlc12qvlwiklam7hz2r311fdcqfim-libffi-3.3/include:/gnu/store/96srhmpmxa20wmsck95g3iq4hb3lz4a0-glib-2.70.2/include:/gnu/store/5583c2za2jsn9g6az79rnksgvigwnsk7-util-linux-2.37.2-lib/include:/gnu/store/di5bqb45hi5lvp2q08hlxqjdcl9phjb1-pcre-8.45/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/hm6dlgzkqz33fbiba07jjh8yzdikn7pp-boost-1.77.0/lib:/gnu/store/ryhsn2ipbg35g3jnjxf867flz4x79xkx-c-blosc-1.21.1/lib:/gnu/store/pbs0gsb14w85ix7c5s0d894ywxbrgj0k-gsl-2.7/lib:/gnu/store/imz1fhpcg603a4ny7k9yla72d6y302aw-hdf5-1.10.7/lib:/gnu/store/f0ymak6hcipdq7ck7978yprad5mwpafn-hdf5-blosc-1.0.0/lib:/gnu/store/akfnv4b78fzwikdp4jld819vh389i8z2-python-cython-0.29.24/lib:/gnu/store/8qv5kb2fgm4c3bf70zcg9l6hkf3qzpw9-zlib-1.2.11/lib:/gnu/store/5f92vxq7g120bpns2nxzi1rgwd9y2xj3-python-numpy-1.21.6/lib:/gnu/store/j2nad0dk0385jg91a4jvghjn57p6z8lx-python-pycurl-7.43.0.5/lib:/gnu/store/x0281pavd14z9rnvs7mpdwpxi3nyb9qh-python-pyzmq-22.3.0/lib:/gnu/store/x5lh9v171m43c370g64qxrky8nizl5xr-python-scipy-1.8.0/lib:/gnu/store/kchyiykalfi0y003w2y722bkf0nl04y5-python-tables-3.6.1/lib:/gnu/store/s3hl12jxz9ybs7nsy7kq7ybzz7qnzmsg-bzip2-1.0.8/lib:/gnu/store/c8isj4jq6knv0icfgr43di6q3nvdzkx7-xz-5.2.5/lib:/gnu/store/4ic6244i3ca4b4rxc2wnrgllsidyishv-file-5.39/lib:/gnu/store/690qz3fg334dpwn3pn6k59n4wc943p2b-gawk-5.1.0/lib:/gnu/store/rc781v4k0drhaqn90xfwwpspki5x0bvf-binutils-2.37/lib:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/lib:/gnu/store/4jdghmc65q7i7ib89zmvq66l0ghf7jc4-glibc-2.33-static/lib:/gnu/store/fnr1z6xsan0437r0yg48d0y8k32kqxby-glibc-utf8-locales-2.33/lib:/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/lib:/gnu/store/kw41zfr5s3ay2xva287lcpgzqa7bhvh1-python-pyparsing-3.0.6/lib:/gnu/store/pn730yy9x9kkf4zwsqlwnm3rl984jw29-python-matplotlib-3.5.2/lib:/gnu/store/bkbggdglf06i51j4ll80wr8a8wxs9hp2-python-numexpr-2.7.3/lib:/gnu/store/mwbawcjdsmg13jjw0315z99sp88n4rd4-python-wxpython-4.0.7.post1/lib:/gnu/store/akhfk7wq2i8bkxlv8i6ra10cy0b7iq6l-python-3.9.9-tk/lib:/gnu/store/3bjjwwwbniv92j0cg8kp1h5k2q3c42n3-python-six-1.16.0/lib:/gnu/store/wkrmii2s5a5l1wliz9cwj7qgkgiqm6jn-python-pytz-2022.1/lib:/gnu/store/iffaxh1y899wdh62f14wbmrnvvcq169j-python-pygobject-3.40.1/lib:/gnu/store/plcn48kpwwd7id02i38d6sl5j5lz569c-python-pillow-9.0.0/lib:/gnu/store/kxlnph6hn0clsqbbf7b0f61hw51ak2g2-python-packaging-21.3/lib:/gnu/store/81vgc9yqfwaz42yfqw8v5fk2xivw67jx-python-kiwisolver-1.0.1/lib:/gnu/store/zlg7s86frmvbyf27627h0lgy54lwrkl9-python-fonttools-4.28.5/lib:/gnu/store/xs8pxa4rr2zkb2hr5nhkxr7ijxxgmqna-python-dateutil-2.8.2/lib:/gnu/store/rlm066wjz6mk1771yl2fva6scpwfp04x-python-cycler-0.10.0/lib:/gnu/store/sgs95j3njwkkw752iy4i8rycn37cs69z-python-certifi-2021.10.8/lib:/gnu/store/6zsi1abj9sj5ydmrajgds6bk7kkym19n-python-cairocffi-1.2.0/lib:/gnu/store/g73j8zgr13dnxrfggwx0z6bpadbz2ymq-gobject-introspection-1.66.1/lib:/gnu/store/wgqhlc12qvlwiklam7hz2r311fdcqfim-libffi-3.3/lib:/gnu/store/96srhmpmxa20wmsck95g3iq4hb3lz4a0-glib-2.70.2/lib:/gnu/store/wpms391jrhhs74smgxkpvzdz2n1ny7wl-python-olefile-0.46/lib:/gnu/store/iz2yzb63glbc0llfxh9dblyprp3a7vzb-python-xcffib-0.11.1/lib:/gnu/store/5583c2za2jsn9g6az79rnksgvigwnsk7-util-linux-2.37.2-lib/lib:/gnu/store/di5bqb45hi5lvp2q08hlxqjdcl9phjb1-pcre-8.45/lib:/gnu/store/4hzdy7w8mnxpi3054m46xd00ixqfhb6g-python-cffi-1.14.4/lib:/gnu/store/1mdg7xc4zx0i9s0kd0hwwq98bgab51s1-python-pycparser-2.21/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/fnr1z6xsan0437r0yg48d0y8k32kqxby-glibc-utf8-locales-2.33/lib/locale'
environment variable `GI_TYPELIB_PATH' set to `/gnu/store/g73j8zgr13dnxrfggwx0z6bpadbz2ymq-gobject-introspection-1.66.1/lib/girepository-1.0'
environment variable `XDG_DATA_DIRS' set to `/gnu/store/hm6dlgzkqz33fbiba07jjh8yzdikn7pp-boost-1.77.0/share:/gnu/store/ryhsn2ipbg35g3jnjxf867flz4x79xkx-c-blosc-1.21.1/share:/gnu/store/pbs0gsb14w85ix7c5s0d894ywxbrgj0k-gsl-2.7/share:/gnu/store/imz1fhpcg603a4ny7k9yla72d6y302aw-hdf5-1.10.7/share:/gnu/store/f0ymak6hcipdq7ck7978yprad5mwpafn-hdf5-blosc-1.0.0/share:/gnu/store/akfnv4b78fzwikdp4jld819vh389i8z2-python-cython-0.29.24/share:/gnu/store/8qv5kb2fgm4c3bf70zcg9l6hkf3qzpw9-zlib-1.2.11/share:/gnu/store/5f92vxq7g120bpns2nxzi1rgwd9y2xj3-python-numpy-1.21.6/share:/gnu/store/j2nad0dk0385jg91a4jvghjn57p6z8lx-python-pycurl-7.43.0.5/share:/gnu/store/x0281pavd14z9rnvs7mpdwpxi3nyb9qh-python-pyzmq-22.3.0/share:/gnu/store/x5lh9v171m43c370g64qxrky8nizl5xr-python-scipy-1.8.0/share:/gnu/store/kchyiykalfi0y003w2y722bkf0nl04y5-python-tables-3.6.1/share:/gnu/store/g2ajyl8xk9aarxrgjbng2hkj3qm2v0z2-tar-1.34/share:/gnu/store/iixwcv3k49ks1rf34pjgfzmzyhhgwng3-gzip-1.10/share:/gnu/store/s3hl12jxz9ybs7nsy7kq7ybzz7qnzmsg-bzip2-1.0.8/share:/gnu/store/c8isj4jq6knv0icfgr43di6q3nvdzkx7-xz-5.2.5/share:/gnu/store/4ic6244i3ca4b4rxc2wnrgllsidyishv-file-5.39/share:/gnu/store/ahmmvw21p11ik80lg1f953y7fd8bqkjm-diffutils-3.8/share:/gnu/store/z39hnrwds1dgcbpfgj8dnv2cngjb2xbl-patch-2.7.6/share:/gnu/store/39rsx3nl4c31952jybbjb8d6idr5hx7r-findutils-4.8.0/share:/gnu/store/690qz3fg334dpwn3pn6k59n4wc943p2b-gawk-5.1.0/share:/gnu/store/wxgv6i8g0p24q5gcyzd0yr07s8kn9680-sed-4.8/share:/gnu/store/xjwp2hsd9256icjjybfrmznppjicywf6-grep-3.6/share:/gnu/store/d251rfgc9nm2clzffzhgiipdvfvzkvwi-coreutils-8.32/share:/gnu/store/55cbpsi18mahg131nmiya6km5b4mscfa-make-4.3/share:/gnu/store/4y5m9lb8k3qkb1y9m02sw9w9a6hacd16-bash-minimal-5.1.8/share:/gnu/store/rc781v4k0drhaqn90xfwwpspki5x0bvf-binutils-2.37/share:/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/share:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/share:/gnu/store/4jdghmc65q7i7ib89zmvq66l0ghf7jc4-glibc-2.33-static/share:/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/share:/gnu/store/kw41zfr5s3ay2xva287lcpgzqa7bhvh1-python-pyparsing-3.0.6/share:/gnu/store/pn730yy9x9kkf4zwsqlwnm3rl984jw29-python-matplotlib-3.5.2/share:/gnu/store/bkbggdglf06i51j4ll80wr8a8wxs9hp2-python-numexpr-2.7.3/share:/gnu/store/6mjww4iz4xdan74d5bbjfh7il8rngfkk-linux-libre-headers-5.10.35/share:/gnu/store/mwbawcjdsmg13jjw0315z99sp88n4rd4-python-wxpython-4.0.7.post1/share:/gnu/store/akhfk7wq2i8bkxlv8i6ra10cy0b7iq6l-python-3.9.9-tk/share:/gnu/store/3bjjwwwbniv92j0cg8kp1h5k2q3c42n3-python-six-1.16.0/share:/gnu/store/wkrmii2s5a5l1wliz9cwj7qgkgiqm6jn-python-pytz-2022.1/share:/gnu/store/plcn48kpwwd7id02i38d6sl5j5lz569c-python-pillow-9.0.0/share:/gnu/store/kxlnph6hn0clsqbbf7b0f61hw51ak2g2-python-packaging-21.3/share:/gnu/store/81vgc9yqfwaz42yfqw8v5fk2xivw67jx-python-kiwisolver-1.0.1/share:/gnu/store/zlg7s86frmvbyf27627h0lgy54lwrkl9-python-fonttools-4.28.5/share:/gnu/store/xs8pxa4rr2zkb2hr5nhkxr7ijxxgmqna-python-dateutil-2.8.2/share:/gnu/store/rlm066wjz6mk1771yl2fva6scpwfp04x-python-cycler-0.10.0/share:/gnu/store/sgs95j3njwkkw752iy4i8rycn37cs69z-python-certifi-2021.10.8/share:/gnu/store/6zsi1abj9sj5ydmrajgds6bk7kkym19n-python-cairocffi-1.2.0/share:/gnu/store/g73j8zgr13dnxrfggwx0z6bpadbz2ymq-gobject-introspection-1.66.1/share:/gnu/store/wgqhlc12qvlwiklam7hz2r311fdcqfim-libffi-3.3/share:/gnu/store/96srhmpmxa20wmsck95g3iq4hb3lz4a0-glib-2.70.2/share:/gnu/store/wpms391jrhhs74smgxkpvzdz2n1ny7wl-python-olefile-0.46/share:/gnu/store/iz2yzb63glbc0llfxh9dblyprp3a7vzb-python-xcffib-0.11.1/share:/gnu/store/5583c2za2jsn9g6az79rnksgvigwnsk7-util-linux-2.37.2-lib/share:/gnu/store/di5bqb45hi5lvp2q08hlxqjdcl9phjb1-pcre-8.45/share:/gnu/store/4hzdy7w8mnxpi3054m46xd00ixqfhb6g-python-cffi-1.14.4/share:/gnu/store/1mdg7xc4zx0i9s0kd0hwwq98bgab51s1-python-pycparser-2.21/share'
environment variable `GIO_EXTRA_MODULES' unset
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'en_US.utf8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
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`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/csv.h' -> `./src/libplinkio/csv.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/snp_lookup.h' -> `./src/libplinkio/snp_lookup.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/common.h' -> `./src/libplinkio/common.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/snparray.c' -> `./src/libplinkio/snparray.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/bim_parse.h' -> `./src/libplinkio/bim_parse.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/utarray.h' -> `./src/libplinkio/utarray.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/bed.c' -> `./src/libplinkio/bed.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/COPYING' -> `./src/libplinkio/COPYING'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/cplinkio.c' -> `./src/libplinkio/cplinkio.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/bed_header.c' -> `./src/libplinkio/bed_header.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/plinkio.c' -> `./src/libplinkio/plinkio.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/snp_lookup_little.h' -> `./src/libplinkio/snp_lookup_little.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/bim_parse.c' -> `./src/libplinkio/bim_parse.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/bed_header.h' -> `./src/libplinkio/bed_header.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/plinkio.h' -> `./src/libplinkio/plinkio.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/fam_parse.c' -> `./src/libplinkio/fam_parse.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/status.h' -> `./src/libplinkio/status.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/fam.h' -> `./src/libplinkio/fam.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/file.c' -> `./src/libplinkio/file.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/libcsv.c' -> `./src/libplinkio/libcsv.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/snparray.h' -> `./src/libplinkio/snparray.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/bim.h' -> `./src/libplinkio/bim.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/LICENSE' -> `./src/libplinkio/LICENSE'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/bim.c' -> `./src/libplinkio/bim.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/snp_lookup_big.h' -> `./src/libplinkio/snp_lookup_big.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/shell.c' -> `./src/sqlite/shell.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/sqlite3.h' -> `./src/sqlite/sqlite3.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/vt_sqlite3_ext.cpp' -> `./src/sqlite/vt_sqlite3_ext.cpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/sqlite3.c' -> `./src/sqlite/sqlite3.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/sqlite3ext.h' -> `./src/sqlite/sqlite3ext.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/util.c' -> `./src/sqlite/py3/util.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/prepare_protocol.c' -> `./src/sqlite/py3/prepare_protocol.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/prepare_protocol.h' -> `./src/sqlite/py3/prepare_protocol.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/statement.h' -> `./src/sqlite/py3/statement.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/module.c' -> `./src/sqlite/py3/module.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/util.h' -> `./src/sqlite/py3/util.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/sqlitecompat.h' -> `./src/sqlite/py3/sqlitecompat.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/row.h' -> `./src/sqlite/py3/row.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/cursor.h' -> `./src/sqlite/py3/cursor.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/cursor.c' -> `./src/sqlite/py3/cursor.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/connection.h' -> `./src/sqlite/py3/connection.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/connection.c' -> `./src/sqlite/py3/connection.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/statement.c' -> `./src/sqlite/py3/statement.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/microprotocols.h' -> `./src/sqlite/py3/microprotocols.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/cache.h' -> `./src/sqlite/py3/cache.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/microprotocols.c' -> `./src/sqlite/py3/microprotocols.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/row.c' -> `./src/sqlite/py3/row.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/cache.c' -> `./src/sqlite/py3/cache.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/module.h' -> `./src/sqlite/py3/module.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/util.c' -> `./src/sqlite/py2/util.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/prepare_protocol.c' -> `./src/sqlite/py2/prepare_protocol.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/prepare_protocol.h' -> `./src/sqlite/py2/prepare_protocol.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/statement.h' -> `./src/sqlite/py2/statement.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/module.c' -> `./src/sqlite/py2/module.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/util.h' -> `./src/sqlite/py2/util.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/sqlitecompat.h' -> `./src/sqlite/py2/sqlitecompat.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/row.h' -> `./src/sqlite/py2/row.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/cursor.h' -> `./src/sqlite/py2/cursor.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/cursor.c' -> `./src/sqlite/py2/cursor.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/connection.h' -> `./src/sqlite/py2/connection.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/connection.c' -> `./src/sqlite/py2/connection.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/statement.c' -> `./src/sqlite/py2/statement.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/microprotocols.h' -> `./src/sqlite/py2/microprotocols.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/cache.h' -> `./src/sqlite/py2/cache.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/microprotocols.c' -> `./src/sqlite/py2/microprotocols.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/row.c' -> `./src/sqlite/py2/row.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/cache.c' -> `./src/sqlite/py2/cache.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/module.h' -> `./src/sqlite/py2/module.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/rext/MetaSKAT.PFF.VAT.R' -> `./src/rext/MetaSKAT.PFF.VAT.R'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/rext/MetaSKAT.VAT.R' -> `./src/rext/MetaSKAT.VAT.R'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/cgatools.py' -> `./src/variant_tools/cgatools.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/compare.py' -> `./src/variant_tools/compare.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/checking_asso_result.py' -> `./src/variant_tools/checking_asso_result.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/liftOver.py' -> `./src/variant_tools/liftOver.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/simulation.py' -> `./src/variant_tools/simulation.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/annotation.py' -> `./src/variant_tools/annotation.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/genotypes.h' -> `./src/variant_tools/genotypes.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/fisher2.c' -> `./src/variant_tools/fisher2.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/utils.cpp' -> `./src/variant_tools/utils.cpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/cgatools_wrap.cpp' -> `./src/variant_tools/cgatools_wrap.cpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/variant.py' -> `./src/variant_tools/variant.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/action.cpp' -> `./src/variant_tools/action.cpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/vtools.py' -> `./src/variant_tools/vtools.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/assoTests.h' -> `./src/variant_tools/assoTests.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/exporter.py' -> `./src/variant_tools/exporter.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/cgatools.i' -> `./src/variant_tools/cgatools.i'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/vtools_report.py' -> `./src/variant_tools/vtools_report.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/ucsctools.i' -> `./src/variant_tools/ucsctools.i'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/merge_sort_parallel.py' -> `./src/variant_tools/merge_sort_parallel.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/plinkfile.py' -> `./src/variant_tools/plinkfile.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/pipeline.py' -> `./src/variant_tools/pipeline.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/importer.py' -> `./src/variant_tools/importer.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/assoData.h' -> `./src/variant_tools/assoData.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/site_options.py' -> `./src/variant_tools/site_options.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/ucsctools.py' -> `./src/variant_tools/ucsctools.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/vtools_association_cluster.lsf' -> `./src/variant_tools/vtools_association_cluster.lsf'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/__init__.py' -> `./src/variant_tools/__init__.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/meta.py' -> `./src/variant_tools/meta.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/tester.py' -> `./src/variant_tools/tester.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/lm.cpp' -> `./src/variant_tools/lm.cpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/ucsctools_wrap.cpp' -> `./src/variant_tools/ucsctools_wrap.cpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/action.h' -> `./src/variant_tools/action.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/text_reader.py' -> `./src/variant_tools/text_reader.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/assoTests_wrap.cpp' -> `./src/variant_tools/assoTests_wrap.cpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/lm.h' -> `./src/variant_tools/lm.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/assoTests.py' -> `./src/variant_tools/assoTests.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/plot.py' -> `./src/variant_tools/plot.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/assoData.cpp' -> `./src/variant_tools/assoData.cpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/rtester.py' -> `./src/variant_tools/rtester.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/association_hdf5.py' -> `./src/variant_tools/association_hdf5.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/utils.py' -> `./src/variant_tools/utils.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/project.py' -> `./src/variant_tools/project.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/exporter_reader.py' -> `./src/variant_tools/exporter_reader.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/worker_zmq.py' -> `./src/variant_tools/worker_zmq.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/preprocessor.py' -> `./src/variant_tools/preprocessor.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/assoTests.i' -> `./src/variant_tools/assoTests.i'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/importer_allele_hdf5.py' -> `./src/variant_tools/importer_allele_hdf5.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/accessor.py' -> `./src/variant_tools/accessor.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/vt_sqlite3.py' -> `./src/variant_tools/vt_sqlite3.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/utils.h' -> `./src/variant_tools/utils.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/geno_store.py' -> `./src/variant_tools/geno_store.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/fisher2.h' -> `./src/variant_tools/fisher2.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/genotypes.c' -> `./src/variant_tools/genotypes.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/update.py' -> `./src/variant_tools/update.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/phenotype.py' -> `./src/variant_tools/phenotype.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/association.py' -> `./src/variant_tools/association.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/_version.py' -> `./src/variant_tools/_version.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/vtools_association_cluster.pbs' -> `./src/variant_tools/vtools_association_cluster.pbs'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/io_vcf_read.pyx' -> `./src/variant_tools/io_vcf_read.pyx'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/kxTok.h' -> `./src/ucsc/inc/kxTok.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/dnautil.h' -> `./src/ucsc/inc/dnautil.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/bigBed.h' -> `./src/ucsc/inc/bigBed.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/dystring.h' -> `./src/ucsc/inc/dystring.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/udc.h' -> `./src/ucsc/inc/udc.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/sqlNum.h' -> `./src/ucsc/inc/sqlNum.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/sqlList.h' -> `./src/ucsc/inc/sqlList.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/sig.h' -> `./src/ucsc/inc/sig.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/options.h' -> `./src/ucsc/inc/options.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/portable.h' -> `./src/ucsc/inc/portable.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/localmem.h' -> `./src/ucsc/inc/localmem.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/bigWig.h' -> `./src/ucsc/inc/bigWig.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/common.h' -> `./src/ucsc/inc/common.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/memgfx.h' -> `./src/ucsc/inc/memgfx.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/zlibFace.h' -> `./src/ucsc/inc/zlibFace.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/bits.h' -> `./src/ucsc/inc/bits.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/mime.h' -> `./src/ucsc/inc/mime.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/gfxPoly.h' -> `./src/ucsc/inc/gfxPoly.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/filePath.h' -> `./src/ucsc/inc/filePath.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/errabort.h' -> `./src/ucsc/inc/errabort.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/fuzzyFind.h' -> `./src/ucsc/inc/fuzzyFind.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/base64.h' -> `./src/ucsc/inc/base64.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/hmmstats.h' -> `./src/ucsc/inc/hmmstats.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/htmshell.h' -> `./src/ucsc/inc/htmshell.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/bwgInternal.h' -> `./src/ucsc/inc/bwgInternal.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/obscure.h' -> `./src/ucsc/inc/obscure.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/binRange.h' -> `./src/ucsc/inc/binRange.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/memalloc.h' -> `./src/ucsc/inc/memalloc.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/tokenizer.h' -> `./src/ucsc/inc/tokenizer.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/verbose.h' -> `./src/ucsc/inc/verbose.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/asParse.h' -> `./src/ucsc/inc/asParse.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/hash.h' -> `./src/ucsc/inc/hash.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/net.h' -> `./src/ucsc/inc/net.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/dlist.h' -> `./src/ucsc/inc/dlist.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/rangeTree.h' -> `./src/ucsc/inc/rangeTree.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/pipeline.h' -> `./src/ucsc/inc/pipeline.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/basicBed.h' -> `./src/ucsc/inc/basicBed.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/psl.h' -> `./src/ucsc/inc/psl.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/rbTree.h' -> `./src/ucsc/inc/rbTree.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/vcf.h' -> `./src/ucsc/inc/vcf.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/bbiFile.h' -> `./src/ucsc/inc/bbiFile.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/https.h' -> `./src/ucsc/inc/https.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/bamFile.h' -> `./src/ucsc/inc/bamFile.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/aliType.h' -> `./src/ucsc/inc/aliType.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/cirTree.h' -> `./src/ucsc/inc/cirTree.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/internet.h' -> `./src/ucsc/inc/internet.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/cheapcgi.h' -> `./src/ucsc/inc/cheapcgi.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/bPlusTree.h' -> `./src/ucsc/inc/bPlusTree.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/linefile.h' -> `./src/ucsc/inc/linefile.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/dnaseq.h' -> `./src/ucsc/inc/dnaseq.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/regexHelper.h' -> `./src/ucsc/inc/regexHelper.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/dlist.c' -> `./src/ucsc/lib/dlist.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/memalloc.c' -> `./src/ucsc/lib/memalloc.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/portimpl.h' -> `./src/ucsc/lib/portimpl.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/sqlList.c' -> `./src/ucsc/lib/sqlList.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/servcl.c' -> `./src/ucsc/lib/servcl.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/dystring.c' -> `./src/ucsc/lib/dystring.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/base64.c' -> `./src/ucsc/lib/base64.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/cheapcgi.c' -> `./src/ucsc/lib/cheapcgi.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/tokenizer.c' -> `./src/ucsc/lib/tokenizer.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/osunix.c' -> `./src/ucsc/lib/osunix.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/kxTok.c' -> `./src/ucsc/lib/kxTok.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/psl.c' -> `./src/ucsc/lib/psl.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/cirTree.c' -> `./src/ucsc/lib/cirTree.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/sqlNum.c' -> `./src/ucsc/lib/sqlNum.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/vcf.c' -> `./src/ucsc/lib/vcf.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/htmshell.c' -> `./src/ucsc/lib/htmshell.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/common.c' -> `./src/ucsc/lib/common.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/regexHelper.c' -> `./src/ucsc/lib/regexHelper.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/basicBed.c' -> `./src/ucsc/lib/basicBed.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/bigBed.c' -> `./src/ucsc/lib/bigBed.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/aliType.c' -> `./src/ucsc/lib/aliType.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/servmsII.c' -> `./src/ucsc/lib/servmsII.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/servBrcMcw.c' -> `./src/ucsc/lib/servBrcMcw.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/verbose.c' -> `./src/ucsc/lib/verbose.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/bPlusTree.c' -> `./src/ucsc/lib/bPlusTree.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/obscure.c' -> `./src/ucsc/lib/obscure.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/asParse.c' -> `./src/ucsc/lib/asParse.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/udc.c' -> `./src/ucsc/lib/udc.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/bamFile.c' -> `./src/ucsc/lib/bamFile.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/rbTree.c' -> `./src/ucsc/lib/rbTree.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/binRange.c' -> `./src/ucsc/lib/binRange.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/bwgQuery.c' -> `./src/ucsc/lib/bwgQuery.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/internet.c' -> `./src/ucsc/lib/internet.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/filePath.c' -> `./src/ucsc/lib/filePath.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/dnautil.c' -> `./src/ucsc/lib/dnautil.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/net.c' -> `./src/ucsc/lib/net.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/ffAli.c' -> `./src/ucsc/lib/ffAli.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/servpws.c' -> `./src/ucsc/lib/servpws.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/servcis.c' -> `./src/ucsc/lib/servcis.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/portimpl.c' -> `./src/ucsc/lib/portimpl.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/rangeTree.c' -> `./src/ucsc/lib/rangeTree.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/bits.c' -> `./src/ucsc/lib/bits.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/wildcmp.c' -> `./src/ucsc/lib/wildcmp.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/localmem.c' -> `./src/ucsc/lib/localmem.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/https.c' -> `./src/ucsc/lib/https.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/intExp.c' -> `./src/ucsc/lib/intExp.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/hmmstats.c' -> `./src/ucsc/lib/hmmstats.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/hash.c' -> `./src/ucsc/lib/hash.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/zlibFace.c' -> `./src/ucsc/lib/zlibFace.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/pipeline.c' -> `./src/ucsc/lib/pipeline.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/mime.c' -> `./src/ucsc/lib/mime.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/servCrunx.c' -> `./src/ucsc/lib/servCrunx.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/errabort.c' -> `./src/ucsc/lib/errabort.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/bbiRead.c' -> `./src/ucsc/lib/bbiRead.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/linefile.c' -> `./src/ucsc/lib/linefile.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/tabix/knetfile.h' -> `./src/ucsc/tabix/knetfile.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/tabix/ksort.h' -> `./src/ucsc/tabix/ksort.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/tabix/kseq.h' -> `./src/ucsc/tabix/kseq.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/tabix/kstring.h' -> `./src/ucsc/tabix/kstring.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/tabix/knetfile.c' -> `./src/ucsc/tabix/knetfile.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/tabix/kstring.c' -> `./src/ucsc/tabix/kstring.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/tabix/index.c' -> `./src/ucsc/tabix/index.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/tabix/khash.h' -> `./src/ucsc/tabix/khash.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/tabix/bam_endian.h' -> `./src/ucsc/tabix/bam_endian.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/tabix/bedidx.c' -> `./src/ucsc/tabix/bedidx.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/tabix/tabix.h' -> `./src/ucsc/tabix/tabix.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/bgzf.c' -> `./src/ucsc/samtools/bgzf.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/razf.h' -> `./src/ucsc/samtools/razf.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/bam_aux.c' -> `./src/ucsc/samtools/bam_aux.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/sam.h' -> `./src/ucsc/samtools/sam.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/sam_header.c' -> `./src/ucsc/samtools/sam_header.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/faidx.c' -> `./src/ucsc/samtools/faidx.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/sam_header.h' -> `./src/ucsc/samtools/sam_header.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/razf.c' -> `./src/ucsc/samtools/razf.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/kstring.h' -> `./src/ucsc/samtools/kstring.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/bam_index.c' -> `./src/ucsc/samtools/bam_index.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/bgzf.h' -> `./src/ucsc/samtools/bgzf.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/bam_pileup.c' -> `./src/ucsc/samtools/bam_pileup.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/sam.c' -> `./src/ucsc/samtools/sam.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/faidx.h' -> `./src/ucsc/samtools/faidx.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/bam.c' -> `./src/ucsc/samtools/bam.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/bam.h' -> `./src/ucsc/samtools/bam.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/bam_import.c' -> `./src/ucsc/samtools/bam_import.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/core.hpp' -> `./src/cgatools/core.hpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/reference/range.hpp' -> `./src/cgatools/reference/range.hpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/reference/GeneDataStore.cpp' -> `./src/cgatools/reference/GeneDataStore.cpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/reference/ChromosomeIdField.cpp' -> `./src/cgatools/reference/ChromosomeIdField.cpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/reference/CompactDnaSequence.cpp' -> `./src/cgatools/reference/CompactDnaSequence.cpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/reference/RepeatMaskerStore.hpp' -> `./src/cgatools/reference/RepeatMaskerStore.hpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/reference/ChromosomeIdField.hpp' -> `./src/cgatools/reference/ChromosomeIdField.hpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/reference/GeneDataStore.hpp' -> `./src/cgatools/reference/GeneDataStore.hpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/reference/CrrFileWriter.hpp' -> `./src/cgatools/reference/CrrFileWriter.hpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/reference/CompactDnaSequence.hpp' -> `./src/cgatools/reference/CompactDnaSequence.hpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/reference/RangeAnnotationStore.hpp' -> `./src/cgatools/reference/RangeAnnotationStore.hpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/reference/CrrFile.hpp' -> `./src/cgatools/reference/CrrFile.hpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/reference/CrrFileWriter.cpp' -> `./src/cgatools/reference/CrrFileWriter.cpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/reference/CrrFile.cpp' -> `./src/cgatools/reference/CrrFile.cpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/DelimitedFile.hpp' -> `./src/cgatools/util/DelimitedFile.hpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/StringSet.hpp' -> `./src/cgatools/util/StringSet.hpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/DelimitedFile.cpp' -> `./src/cgatools/util/DelimitedFile.cpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/parse.hpp' -> `./src/cgatools/util/parse.hpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/Exception.hpp' -> `./src/cgatools/util/Exception.hpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/RangeIntersector.hpp' -> `./src/cgatools/util/RangeIntersector.hpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/Md5.cpp' -> `./src/cgatools/util/Md5.cpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/BaseUtil.cpp' -> `./src/cgatools/util/BaseUtil.cpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/Exception.cpp' -> `./src/cgatools/util/Exception.cpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/GenericHistogram.hpp' -> `./src/cgatools/util/GenericHistogram.hpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/StringSet.cpp' -> `./src/cgatools/util/StringSet.cpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/DelimitedLineParser.cpp' -> `./src/cgatools/util/DelimitedLineParser.cpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/BaseUtil.hpp' -> `./src/cgatools/util/BaseUtil.hpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/GenericHistogram.cpp' -> `./src/cgatools/util/GenericHistogram.cpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/Streams.hpp' -> `./src/cgatools/util/Streams.hpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/RangeSet.hpp' -> `./src/cgatools/util/RangeSet.hpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/DelimitedLineParser.hpp' -> `./src/cgatools/util/DelimitedLineParser.hpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/parse.cpp' -> `./src/cgatools/util/parse.cpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/Md5.hpp' -> `./src/cgatools/util/Md5.hpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/Streams.cpp' -> `./src/cgatools/util/Streams.cpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/RangeSet.cpp' -> `./src/cgatools/util/RangeSet.cpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/IndirectComparator.hpp' -> `./src/cgatools/util/IndirectComparator.hpp'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/hdf5-blosc/blosc_filter.h' -> `./src/hdf5-blosc/blosc_filter.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/hdf5-blosc/blosc_plugin.h' -> `./src/hdf5-blosc/blosc_plugin.h'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/hdf5-blosc/blosc_plugin.c' -> `./src/hdf5-blosc/blosc_plugin.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/hdf5-blosc/blosc_filter.c' -> `./src/hdf5-blosc/blosc_filter.c'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/md5_annoDB.py' -> `./development/md5_annoDB.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/monitor.py' -> `./development/monitor.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/manage_resource.py' -> `./development/manage_resource.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/conda/build.sh' -> `./development/conda/build.sh'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/conda/meta.yaml' -> `./development/conda/meta.yaml'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/MacOSX/postinstall.sh' -> `./development/MacOSX/postinstall.sh'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/MacOSX/INSTALL' -> `./development/MacOSX/INSTALL'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/MacOSX/variant_tools.pmdoc/01variant-contents.xml' -> `./development/MacOSX/variant_tools.pmdoc/01variant-contents.xml'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/MacOSX/variant_tools.pmdoc/index.xml' -> `./development/MacOSX/variant_tools.pmdoc/index.xml'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/MacOSX/variant_tools.pmdoc/01variant.xml' -> `./development/MacOSX/variant_tools.pmdoc/01variant.xml'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/docker/Dockerfile' -> `./development/docker/Dockerfile'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/Linux/install.sh' -> `./development/Linux/install.sh'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/Linux/extractor-template.sh' -> `./development/Linux/extractor-template.sh'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/docker_ci/Dockerfile' -> `./development/docker_ci/Dockerfile'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_func.py' -> `./test/test_func.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_associate.py' -> `./test/test_associate.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_remove.py' -> `./test/test_remove.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_import.py' -> `./test/test_import.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/testUtils.py' -> `./test/testUtils.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_show.py' -> `./test/test_show.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_exclude.py' -> `./test/test_exclude.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_execute.py' -> `./test/test_execute.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_admin.py' -> `./test/test_admin.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_output.py' -> `./test/test_output.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_phenotype.py' -> `./test/test_phenotype.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_use.py' -> `./test/test_use.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/run_tests.py' -> `./test/run_tests.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_compare.py' -> `./test/test_compare.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_pipeline.pipeline' -> `./test/test_pipeline.pipeline'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_liftover.py' -> `./test/test_liftover.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_update.py' -> `./test/test_update.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_export.py' -> `./test/test_export.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_pipeline.py' -> `./test/test_pipeline.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_avg_depth.py' -> `./test/test_avg_depth.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_select.py' -> `./test/test_select.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_init.py' -> `./test/test_init.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_trans_ratio.py' -> `./test/test_trans_ratio.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/temp_test_import_hdf5.py' -> `./test/temp_test_import_hdf5.py'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_mpi_multi_genotypes.txt' -> `./test/output/import_mpi_multi_genotypes.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_mpi_variant.txt' -> `./test/output/import_mpi_variant.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_multi_sample_samples.txt' -> `./test/output/import_multi_sample_samples.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_mpi_multi_samples.txt' -> `./test/output/import_mpi_multi_samples.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_multi_sample2_variant.txt' -> `./test/output/import_multi_sample2_variant.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/CGA_variant.txt' -> `./test/output/CGA_variant.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/remove_genofield_before_sqlite.txt' -> `./test/output/remove_genofield_before_sqlite.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/exclude_sift.txt' -> `./test/output/exclude_sift.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/phenotype_fields.txt' -> `./test/output/phenotype_fields.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_genotype_1.txt' -> `./test/output/import_genotype_1.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/genotype_variant_sample_output.txt' -> `./test/output/genotype_variant_sample_output.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_customized.txt' -> `./test/output/import_customized.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_mpi_genotypes.txt' -> `./test/output/import_mpi_genotypes.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_mpi_genotype.txt' -> `./test/output/import_mpi_genotype.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/exclude_anno1.txt' -> `./test/output/exclude_anno1.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_txt_1.txt' -> `./test/output/import_txt_1.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores2.txt' -> `./test/output/assores2.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_csv.txt' -> `./test/output/import_csv.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/use_field.txt' -> `./test/output/use_field.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/phenotype_import.txt' -> `./test/output/phenotype_import.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/evsVariantTest.txt' -> `./test/output/evsVariantTest.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/remove_genofield_after_sqlite.txt' -> `./test/output/remove_genofield_after_sqlite.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/remove_field_after.txt' -> `./test/output/remove_field_after.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores5.txt' -> `./test/output/assores5.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/vcf_assigned_sample_name_genotype.txt' -> `./test/output/vcf_assigned_sample_name_genotype.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/remove_genofield_after.txt' -> `./test/output/remove_genofield_after.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_multi_sample_variant.txt' -> `./test/output/import_multi_sample_variant.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores_wss4.txt' -> `./test/output/assores_wss4.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_vcf_alt.txt' -> `./test/output/import_vcf_alt.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_vcf_ref.txt' -> `./test/output/import_vcf_ref.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_genotype_2.txt' -> `./test/output/import_genotype_2.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/vcf_single_sampleName_genotype.txt' -> `./test/output/vcf_single_sampleName_genotype.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/exclude_anno.txt' -> `./test/output/exclude_anno.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores_wss3.txt' -> `./test/output/assores_wss3.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores_wss7.txt' -> `./test/output/assores_wss7.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/missing_gen.tped' -> `./test/output/missing_gen.tped'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/phenotype_phenotype_with_filename_field.txt' -> `./test/output/phenotype_phenotype_with_filename_field.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores1.txt' -> `./test/output/assores1.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_mpi_multi_genotype_hdf5.txt' -> `./test/output/import_mpi_multi_genotype_hdf5.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/remove_phenotype_output.txt' -> `./test/output/remove_phenotype_output.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/liftover_cmp.txt' -> `./test/output/liftover_cmp.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_mixed_build.txt' -> `./test/output/import_mixed_build.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assogrp3.txt' -> `./test/output/assogrp3.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_multi_sample2_samples_hdf5.txt' -> `./test/output/import_multi_sample2_samples_hdf5.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores6.txt' -> `./test/output/assores6.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores7.txt' -> `./test/output/assores7.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assogrp6.txt' -> `./test/output/assogrp6.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/update_sum_stat.txt' -> `./test/output/update_sum_stat.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores_wss1.txt' -> `./test/output/assores_wss1.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/use_position.txt' -> `./test/output/use_position.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/liftover.txt' -> `./test/output/liftover.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assogrp8.txt' -> `./test/output/assogrp8.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_cga.txt' -> `./test/output/import_cga.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assogrp2.txt' -> `./test/output/assogrp2.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores_wss8.txt' -> `./test/output/assores_wss8.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_multi_sample2_samples.txt' -> `./test/output/import_multi_sample2_samples.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/remove_genofield_before.txt' -> `./test/output/remove_genofield_before.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/vcf_multiple_sample_name.txt' -> `./test/output/vcf_multiple_sample_name.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/remove_phenotype_sqlite.txt' -> `./test/output/remove_phenotype_sqlite.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_multi_sample_samples_hdf5.txt' -> `./test/output/import_multi_sample_samples_hdf5.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/remove_phenotype.txt' -> `./test/output/remove_phenotype.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assogrp7.txt' -> `./test/output/assogrp7.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores3.txt' -> `./test/output/assores3.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_mpi_multi_variant.txt' -> `./test/output/import_mpi_multi_variant.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores8.txt' -> `./test/output/assores8.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/remove_field_before.txt' -> `./test/output/remove_field_before.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_mpi_samples.txt' -> `./test/output/import_mpi_samples.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores_wss2.txt' -> `./test/output/assores_wss2.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores_wss6.txt' -> `./test/output/assores_wss6.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/phenotype_phenotype_with_filename.txt' -> `./test/output/phenotype_phenotype_with_filename.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/remove_genofield_after_hdf5.txt' -> `./test/output/remove_genofield_after_hdf5.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/exclude_select_anno.txt' -> `./test/output/exclude_select_anno.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assogrp4.txt' -> `./test/output/assogrp4.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores_wss5.txt' -> `./test/output/assores_wss5.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assogrp5.txt' -> `./test/output/assogrp5.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assogrp1.txt' -> `./test/output/assogrp1.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_cga_phenotype.txt' -> `./test/output/import_cga_phenotype.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores4.txt' -> `./test/output/assores4.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/remove_genofield_before_hdf5.txt' -> `./test/output/remove_genofield_before_hdf5.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/vcf_multiple_samples_genotypes.txt' -> `./test/output/vcf_multiple_samples_genotypes.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_mpi_multi_genotype.txt' -> `./test/output/import_mpi_multi_genotype.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/phenotype/badphenotype1.txt' -> `./test/phenotype/badphenotype1.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/phenotype/badphenotype3.txt' -> `./test/phenotype/badphenotype3.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/phenotype/phenotype.txt' -> `./test/phenotype/phenotype.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/phenotype/badphenotype2.txt' -> `./test/phenotype/badphenotype2.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/phenotype/pheno_filename.txt' -> `./test/phenotype/pheno_filename.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/fmt/dbSNP_hg19validation.fmt' -> `./test/fmt/dbSNP_hg19validation.fmt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/fmt/multi_index.fmt' -> `./test/fmt/multi_index.fmt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/fmt/basic_hg18.fmt' -> `./test/fmt/basic_hg18.fmt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/fmt/new_format.fmt' -> `./test/fmt/new_format.fmt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/fmt/missing_gen.fmt' -> `./test/fmt/missing_gen.fmt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/fmt/genotypes.fmt' -> `./test/fmt/genotypes.fmt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/fmt/randcol.fmt' -> `./test/fmt/randcol.fmt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/ann/testNSFP.ann' -> `./test/ann/testNSFP.ann'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/ann/testNSFP.zip' -> `./test/ann/testNSFP.zip'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/ann/testNSFP.DB.gz' -> `./test/ann/testNSFP.DB.gz'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/ann/testThousandGenomes.ann' -> `./test/ann/testThousandGenomes.ann'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/ann/testThousandGenomes.zip' -> `./test/ann/testThousandGenomes.zip'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/ann/testThousandGenomes.vcf.head' -> `./test/ann/testThousandGenomes.vcf.head'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/V3.vcf' -> `./test/vcf/V3.vcf'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/SAMP3_complex_variants.vcf' -> `./test/vcf/SAMP3_complex_variants.vcf'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/missing_gen.vcf' -> `./test/vcf/missing_gen.vcf'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/chromX.vcf.gz' -> `./test/vcf/chromX.vcf.gz'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/var_format.vcf' -> `./test/vcf/var_format.vcf'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/CEU.vcf.gz.tbi' -> `./test/vcf/CEU.vcf.gz.tbi'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/hdf5_test.vcf' -> `./test/vcf/hdf5_test.vcf'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/input.vcf' -> `./test/vcf/input.vcf'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/SAMP4_complex_variants.vcf' -> `./test/vcf/SAMP4_complex_variants.vcf'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/compare.vcf' -> `./test/vcf/compare.vcf'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/500SAMP.vcf' -> `./test/vcf/500SAMP.vcf'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/CEU.vcf.gz' -> `./test/vcf/CEU.vcf.gz'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/input_nogeno.vcf' -> `./test/vcf/input_nogeno.vcf'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/V1.vcf' -> `./test/vcf/V1.vcf'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/SAMP1.vcf' -> `./test/vcf/SAMP1.vcf'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/V2.vcf' -> `./test/vcf/V2.vcf'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/with_wildtype.vcf' -> `./test/vcf/with_wildtype.vcf'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/CEU_dup.vcf.gz' -> `./test/vcf/CEU_dup.vcf.gz'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/EMPTY.vcf' -> `./test/vcf/EMPTY.vcf'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/hdf5_test.h5' -> `./test/vcf/hdf5_test.h5'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/SAMP2.vcf' -> `./test/vcf/SAMP2.vcf'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/missing_gen_hdf5.vcf' -> `./test/vcf/missing_gen_hdf5.vcf'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/dup_geno.vcf' -> `./test/vcf/dup_geno.vcf'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/proj/assoproj.tar.gz' -> `./test/proj/assoproj.tar.gz'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/plink/dat1.fam' -> `./test/plink/dat1.fam'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/plink/dat1.bim' -> `./test/plink/dat1.bim'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/plink/dat1.bed' -> `./test/plink/dat1.bed'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/genotypes.txt' -> `./test/txt/genotypes.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/CGA.tsv.bz2' -> `./test/txt/CGA.tsv.bz2'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/CASAVA18_INDEL.txt' -> `./test/txt/CASAVA18_INDEL.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/sample_1_chr22.txt' -> `./test/txt/sample_1_chr22.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/ANNOVAR.txt' -> `./test/txt/ANNOVAR.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/CASAVA18_SNP.txt' -> `./test/txt/CASAVA18_SNP.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/dbSNP_hg19validation.txt' -> `./test/txt/dbSNP_hg19validation.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/assoc.dat' -> `./test/txt/assoc.dat'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/assoc.phen' -> `./test/txt/assoc.phen'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/variants.txt' -> `./test/txt/variants.txt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/pileup.indel' -> `./test/txt/pileup.indel'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/complteGenomics.tsv.bz2' -> `./test/txt/complteGenomics.tsv.bz2'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/test.csv' -> `./test/txt/test.csv'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/annovar.txt.exonic_variant_function' -> `./test/txt/annovar.txt.exonic_variant_function'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/assoc.fmt' -> `./test/txt/assoc.fmt'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/invalid.tsv' -> `./test/txt/invalid.tsv'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/input.tsv' -> `./test/txt/input.tsv'
`/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/sample_chr22.txt' -> `./test/txt/sample_chr22.txt'
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patch-shebang: ./development/Linux/extractor-template.sh: changing `/usr/bin/env bash' to `/gnu/store/4y5m9lb8k3qkb1y9m02sw9w9a6hacd16-bash-minimal-5.1.8/bin/bash'
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patch-shebang: ./development/manage_resource.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./development/md5_annoDB.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./development/monitor.py: changing `/usr/bin/env python3' to `/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/bin/python3'
patch-shebang: ./setup.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
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patch-shebang: ./src/variant_tools/__init__.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./src/variant_tools/_version.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./src/variant_tools/accessor.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./src/variant_tools/annotation.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./src/variant_tools/association.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./src/variant_tools/association_hdf5.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./src/variant_tools/compare.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./src/variant_tools/exporter.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./src/variant_tools/exporter_reader.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./src/variant_tools/geno_store.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./src/variant_tools/importer.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./src/variant_tools/liftOver.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./src/variant_tools/merge_sort_parallel.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./src/variant_tools/meta.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./src/variant_tools/phenotype.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./src/variant_tools/pipeline.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./src/variant_tools/plinkfile.py: warning: no binary for interpreter `' found in $PATH
patch-shebang: ./src/variant_tools/plot.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./src/variant_tools/preprocessor.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./src/variant_tools/project.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./src/variant_tools/rtester.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./src/variant_tools/simulation.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./src/variant_tools/tester.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./src/variant_tools/text_reader.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./src/variant_tools/update.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./src/variant_tools/utils.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./src/variant_tools/variant.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./src/variant_tools/vtools.py: warning: no binary for interpreter `python2.7' found in $PATH
patch-shebang: ./src/variant_tools/vtools_association_cluster.lsf: changing `/bin/bash' to `/gnu/store/4y5m9lb8k3qkb1y9m02sw9w9a6hacd16-bash-minimal-5.1.8/bin/bash'
patch-shebang: ./src/variant_tools/vtools_association_cluster.pbs: changing `/bin/bash' to `/gnu/store/4y5m9lb8k3qkb1y9m02sw9w9a6hacd16-bash-minimal-5.1.8/bin/bash'
patch-shebang: ./src/variant_tools/vtools_report.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./src/variant_tools/worker_zmq.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./test/run_tests.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./test/temp_test_import_hdf5.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./test/testUtils.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./test/test_admin.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./test/test_associate.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./test/test_avg_depth.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./test/test_compare.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./test/test_exclude.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./test/test_execute.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./test/test_export.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./test/test_func.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./test/test_import.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./test/test_init.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./test/test_liftover.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./test/test_output.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./test/test_phenotype.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./test/test_pipeline.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./test/test_remove.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./test/test_select.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./test/test_show.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./test/test_trans_ratio.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./test/test_update.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
patch-shebang: ./test/test_use.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python'
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starting phase `build'
running "python setup.py" with command "build" and parameters ()
/gnu/store/akfnv4b78fzwikdp4jld819vh389i8z2-python-cython-0.29.24/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/guix-build-variant-tools-3.1.2.drv-0/source/src/variant_tools/io_vcf_read.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
Compiling src/variant_tools/io_vcf_read.pyx because it changed.
[1/1] Cythonizing src/variant_tools/io_vcf_read.pyx
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.9
creating build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/cgatools.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/compare.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/checking_asso_result.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/liftOver.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/simulation.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/annotation.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/variant.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/vtools.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/exporter.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/vtools_report.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/merge_sort_parallel.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/plinkfile.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/pipeline.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/importer.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/site_options.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/ucsctools.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/__init__.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/meta.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/tester.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/text_reader.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/assoTests.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/plot.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/rtester.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/association_hdf5.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/utils.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/project.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/exporter_reader.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/worker_zmq.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/preprocessor.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/importer_allele_hdf5.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/accessor.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/vt_sqlite3.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/geno_store.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/update.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/phenotype.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/association.py -> build/lib.linux-x86_64-3.9/variant_tools
copying src/variant_tools/_version.py -> build/lib.linux-x86_64-3.9/variant_tools
warning: build_py: byte-compiling is disabled, skipping.

running build_ext
building 'variant_tools._vt_sqlite3' extension
creating build/temp.linux-x86_64-3.9
creating build/temp.linux-x86_64-3.9/src
creating build/temp.linux-x86_64-3.9/src/sqlite
creating build/temp.linux-x86_64-3.9/src/sqlite/py3
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -DMODULE_NAME="vt_sqlite3" -DHAVE_USLEEP -Isrc/sqlite -Isrc/sqlite/py3 -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c src/sqlite/py3/cache.c -o build/temp.linux-x86_64-3.9/src/sqlite/py3/cache.o -w
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -DMODULE_NAME="vt_sqlite3" -DHAVE_USLEEP -Isrc/sqlite -Isrc/sqlite/py3 -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c src/sqlite/py3/connection.c -o build/temp.linux-x86_64-3.9/src/sqlite/py3/connection.o -w
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -DMODULE_NAME="vt_sqlite3" -DHAVE_USLEEP -Isrc/sqlite -Isrc/sqlite/py3 -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c src/sqlite/py3/cursor.c -o build/temp.linux-x86_64-3.9/src/sqlite/py3/cursor.o -w
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -DMODULE_NAME="vt_sqlite3" -DHAVE_USLEEP -Isrc/sqlite -Isrc/sqlite/py3 -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c src/sqlite/py3/microprotocols.c -o build/temp.linux-x86_64-3.9/src/sqlite/py3/microprotocols.o -w
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -DMODULE_NAME="vt_sqlite3" -DHAVE_USLEEP -Isrc/sqlite -Isrc/sqlite/py3 -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c src/sqlite/py3/module.c -o build/temp.linux-x86_64-3.9/src/sqlite/py3/module.o -w
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -DMODULE_NAME="vt_sqlite3" -DHAVE_USLEEP -Isrc/sqlite -Isrc/sqlite/py3 -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c src/sqlite/py3/prepare_protocol.c -o build/temp.linux-x86_64-3.9/src/sqlite/py3/prepare_protocol.o -w
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -DMODULE_NAME="vt_sqlite3" -DHAVE_USLEEP -Isrc/sqlite -Isrc/sqlite/py3 -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c src/sqlite/py3/row.c -o build/temp.linux-x86_64-3.9/src/sqlite/py3/row.o -w
src/sqlite/py3/row.c: In function ‘pysqlite_row_print’:
src/sqlite/py3/row.c:161:27: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’
  161 |     return (&PyTuple_Type)->tp_print(self->data, fp, flags);
      |                           ^~
error: command '/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/bin/gcc' failed with exit code 1
error: in phase 'build': uncaught exception:
%exception #<&invoke-error program: "python" arguments: ("-c" "import setuptools, tokenize;__file__='setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))" "build") exit-status: 1 term-signal: #f stop-signal: #f> 
phase `build' failed after 14.0 seconds
command "python" "-c" "import setuptools, tokenize;__file__='setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))" "build" failed with status 1