starting phase `set-SOURCE-DATE-EPOCH' phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds starting phase `set-paths' environment variable `PATH' set to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin:/gnu/store/pbs0gsb14w85ix7c5s0d894ywxbrgj0k-gsl-2.7/bin:/gnu/store/imz1fhpcg603a4ny7k9yla72d6y302aw-hdf5-1.10.7/bin:/gnu/store/akfnv4b78fzwikdp4jld819vh389i8z2-python-cython-0.29.24/bin:/gnu/store/5f92vxq7g120bpns2nxzi1rgwd9y2xj3-python-numpy-1.21.6/bin:/gnu/store/kchyiykalfi0y003w2y722bkf0nl04y5-python-tables-3.6.1/bin:/gnu/store/g2ajyl8xk9aarxrgjbng2hkj3qm2v0z2-tar-1.34/bin:/gnu/store/iixwcv3k49ks1rf34pjgfzmzyhhgwng3-gzip-1.10/bin:/gnu/store/s3hl12jxz9ybs7nsy7kq7ybzz7qnzmsg-bzip2-1.0.8/bin:/gnu/store/c8isj4jq6knv0icfgr43di6q3nvdzkx7-xz-5.2.5/bin:/gnu/store/4ic6244i3ca4b4rxc2wnrgllsidyishv-file-5.39/bin:/gnu/store/ahmmvw21p11ik80lg1f953y7fd8bqkjm-diffutils-3.8/bin:/gnu/store/z39hnrwds1dgcbpfgj8dnv2cngjb2xbl-patch-2.7.6/bin:/gnu/store/39rsx3nl4c31952jybbjb8d6idr5hx7r-findutils-4.8.0/bin:/gnu/store/690qz3fg334dpwn3pn6k59n4wc943p2b-gawk-5.1.0/bin:/gnu/store/wxgv6i8g0p24q5gcyzd0yr07s8kn9680-sed-4.8/bin:/gnu/store/xjwp2hsd9256icjjybfrmznppjicywf6-grep-3.6/bin:/gnu/store/d251rfgc9nm2clzffzhgiipdvfvzkvwi-coreutils-8.32/bin:/gnu/store/55cbpsi18mahg131nmiya6km5b4mscfa-make-4.3/bin:/gnu/store/4y5m9lb8k3qkb1y9m02sw9w9a6hacd16-bash-minimal-5.1.8/bin:/gnu/store/s2pg5k98fl2g2szg9dykxyd9zl3xihv9-ld-wrapper-0/bin:/gnu/store/rc781v4k0drhaqn90xfwwpspki5x0bvf-binutils-2.37/bin:/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/bin:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/bin:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/sbin:/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/bin:/gnu/store/mwbawcjdsmg13jjw0315z99sp88n4rd4-python-wxpython-4.0.7.post1/bin:/gnu/store/zlg7s86frmvbyf27627h0lgy54lwrkl9-python-fonttools-4.28.5/bin:/gnu/store/g73j8zgr13dnxrfggwx0z6bpadbz2ymq-gobject-introspection-1.66.1/bin' environment variable `GUIX_PYTHONPATH' set to `/gnu/store/akfnv4b78fzwikdp4jld819vh389i8z2-python-cython-0.29.24/lib/python3.9/site-packages:/gnu/store/5f92vxq7g120bpns2nxzi1rgwd9y2xj3-python-numpy-1.21.6/lib/python3.9/site-packages:/gnu/store/j2nad0dk0385jg91a4jvghjn57p6z8lx-python-pycurl-7.43.0.5/lib/python3.9/site-packages:/gnu/store/x0281pavd14z9rnvs7mpdwpxi3nyb9qh-python-pyzmq-22.3.0/lib/python3.9/site-packages:/gnu/store/x5lh9v171m43c370g64qxrky8nizl5xr-python-scipy-1.8.0/lib/python3.9/site-packages:/gnu/store/kchyiykalfi0y003w2y722bkf0nl04y5-python-tables-3.6.1/lib/python3.9/site-packages:/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/lib/python3.9/site-packages:/gnu/store/kw41zfr5s3ay2xva287lcpgzqa7bhvh1-python-pyparsing-3.0.6/lib/python3.9/site-packages:/gnu/store/pn730yy9x9kkf4zwsqlwnm3rl984jw29-python-matplotlib-3.5.2/lib/python3.9/site-packages:/gnu/store/bkbggdglf06i51j4ll80wr8a8wxs9hp2-python-numexpr-2.7.3/lib/python3.9/site-packages:/gnu/store/mwbawcjdsmg13jjw0315z99sp88n4rd4-python-wxpython-4.0.7.post1/lib/python3.9/site-packages:/gnu/store/akhfk7wq2i8bkxlv8i6ra10cy0b7iq6l-python-3.9.9-tk/lib/python3.9/site-packages:/gnu/store/3bjjwwwbniv92j0cg8kp1h5k2q3c42n3-python-six-1.16.0/lib/python3.9/site-packages:/gnu/store/wkrmii2s5a5l1wliz9cwj7qgkgiqm6jn-python-pytz-2022.1/lib/python3.9/site-packages:/gnu/store/iffaxh1y899wdh62f14wbmrnvvcq169j-python-pygobject-3.40.1/lib/python3.9/site-packages:/gnu/store/plcn48kpwwd7id02i38d6sl5j5lz569c-python-pillow-9.0.0/lib/python3.9/site-packages:/gnu/store/kxlnph6hn0clsqbbf7b0f61hw51ak2g2-python-packaging-21.3/lib/python3.9/site-packages:/gnu/store/81vgc9yqfwaz42yfqw8v5fk2xivw67jx-python-kiwisolver-1.0.1/lib/python3.9/site-packages:/gnu/store/zlg7s86frmvbyf27627h0lgy54lwrkl9-python-fonttools-4.28.5/lib/python3.9/site-packages:/gnu/store/xs8pxa4rr2zkb2hr5nhkxr7ijxxgmqna-python-dateutil-2.8.2/lib/python3.9/site-packages:/gnu/store/rlm066wjz6mk1771yl2fva6scpwfp04x-python-cycler-0.10.0/lib/python3.9/site-packages:/gnu/store/sgs95j3njwkkw752iy4i8rycn37cs69z-python-certifi-2021.10.8/lib/python3.9/site-packages:/gnu/store/6zsi1abj9sj5ydmrajgds6bk7kkym19n-python-cairocffi-1.2.0/lib/python3.9/site-packages:/gnu/store/wpms391jrhhs74smgxkpvzdz2n1ny7wl-python-olefile-0.46/lib/python3.9/site-packages:/gnu/store/iz2yzb63glbc0llfxh9dblyprp3a7vzb-python-xcffib-0.11.1/lib/python3.9/site-packages:/gnu/store/4hzdy7w8mnxpi3054m46xd00ixqfhb6g-python-cffi-1.14.4/lib/python3.9/site-packages:/gnu/store/1mdg7xc4zx0i9s0kd0hwwq98bgab51s1-python-pycparser-2.21/lib/python3.9/site-packages' environment variable `PYTHONTZPATH' unset environment variable `BASH_LOADABLES_PATH' unset environment variable `C_INCLUDE_PATH' set to `/gnu/store/hm6dlgzkqz33fbiba07jjh8yzdikn7pp-boost-1.77.0/include:/gnu/store/ryhsn2ipbg35g3jnjxf867flz4x79xkx-c-blosc-1.21.1/include:/gnu/store/pbs0gsb14w85ix7c5s0d894ywxbrgj0k-gsl-2.7/include:/gnu/store/imz1fhpcg603a4ny7k9yla72d6y302aw-hdf5-1.10.7/include:/gnu/store/f0ymak6hcipdq7ck7978yprad5mwpafn-hdf5-blosc-1.0.0/include:/gnu/store/8qv5kb2fgm4c3bf70zcg9l6hkf3qzpw9-zlib-1.2.11/include:/gnu/store/s3hl12jxz9ybs7nsy7kq7ybzz7qnzmsg-bzip2-1.0.8/include:/gnu/store/c8isj4jq6knv0icfgr43di6q3nvdzkx7-xz-5.2.5/include:/gnu/store/4ic6244i3ca4b4rxc2wnrgllsidyishv-file-5.39/include:/gnu/store/690qz3fg334dpwn3pn6k59n4wc943p2b-gawk-5.1.0/include:/gnu/store/55cbpsi18mahg131nmiya6km5b4mscfa-make-4.3/include:/gnu/store/rc781v4k0drhaqn90xfwwpspki5x0bvf-binutils-2.37/include:/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/include:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/include:/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include:/gnu/store/6mjww4iz4xdan74d5bbjfh7il8rngfkk-linux-libre-headers-5.10.35/include:/gnu/store/iffaxh1y899wdh62f14wbmrnvvcq169j-python-pygobject-3.40.1/include:/gnu/store/g73j8zgr13dnxrfggwx0z6bpadbz2ymq-gobject-introspection-1.66.1/include:/gnu/store/wgqhlc12qvlwiklam7hz2r311fdcqfim-libffi-3.3/include:/gnu/store/96srhmpmxa20wmsck95g3iq4hb3lz4a0-glib-2.70.2/include:/gnu/store/5583c2za2jsn9g6az79rnksgvigwnsk7-util-linux-2.37.2-lib/include:/gnu/store/di5bqb45hi5lvp2q08hlxqjdcl9phjb1-pcre-8.45/include' environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/hm6dlgzkqz33fbiba07jjh8yzdikn7pp-boost-1.77.0/include:/gnu/store/ryhsn2ipbg35g3jnjxf867flz4x79xkx-c-blosc-1.21.1/include:/gnu/store/pbs0gsb14w85ix7c5s0d894ywxbrgj0k-gsl-2.7/include:/gnu/store/imz1fhpcg603a4ny7k9yla72d6y302aw-hdf5-1.10.7/include:/gnu/store/f0ymak6hcipdq7ck7978yprad5mwpafn-hdf5-blosc-1.0.0/include:/gnu/store/8qv5kb2fgm4c3bf70zcg9l6hkf3qzpw9-zlib-1.2.11/include:/gnu/store/s3hl12jxz9ybs7nsy7kq7ybzz7qnzmsg-bzip2-1.0.8/include:/gnu/store/c8isj4jq6knv0icfgr43di6q3nvdzkx7-xz-5.2.5/include:/gnu/store/4ic6244i3ca4b4rxc2wnrgllsidyishv-file-5.39/include:/gnu/store/690qz3fg334dpwn3pn6k59n4wc943p2b-gawk-5.1.0/include:/gnu/store/55cbpsi18mahg131nmiya6km5b4mscfa-make-4.3/include:/gnu/store/rc781v4k0drhaqn90xfwwpspki5x0bvf-binutils-2.37/include:/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/include/c++:/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/include:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/include:/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include:/gnu/store/6mjww4iz4xdan74d5bbjfh7il8rngfkk-linux-libre-headers-5.10.35/include:/gnu/store/iffaxh1y899wdh62f14wbmrnvvcq169j-python-pygobject-3.40.1/include:/gnu/store/g73j8zgr13dnxrfggwx0z6bpadbz2ymq-gobject-introspection-1.66.1/include:/gnu/store/wgqhlc12qvlwiklam7hz2r311fdcqfim-libffi-3.3/include:/gnu/store/96srhmpmxa20wmsck95g3iq4hb3lz4a0-glib-2.70.2/include:/gnu/store/5583c2za2jsn9g6az79rnksgvigwnsk7-util-linux-2.37.2-lib/include:/gnu/store/di5bqb45hi5lvp2q08hlxqjdcl9phjb1-pcre-8.45/include' environment variable `LIBRARY_PATH' set to `/gnu/store/hm6dlgzkqz33fbiba07jjh8yzdikn7pp-boost-1.77.0/lib:/gnu/store/ryhsn2ipbg35g3jnjxf867flz4x79xkx-c-blosc-1.21.1/lib:/gnu/store/pbs0gsb14w85ix7c5s0d894ywxbrgj0k-gsl-2.7/lib:/gnu/store/imz1fhpcg603a4ny7k9yla72d6y302aw-hdf5-1.10.7/lib:/gnu/store/f0ymak6hcipdq7ck7978yprad5mwpafn-hdf5-blosc-1.0.0/lib:/gnu/store/akfnv4b78fzwikdp4jld819vh389i8z2-python-cython-0.29.24/lib:/gnu/store/8qv5kb2fgm4c3bf70zcg9l6hkf3qzpw9-zlib-1.2.11/lib:/gnu/store/5f92vxq7g120bpns2nxzi1rgwd9y2xj3-python-numpy-1.21.6/lib:/gnu/store/j2nad0dk0385jg91a4jvghjn57p6z8lx-python-pycurl-7.43.0.5/lib:/gnu/store/x0281pavd14z9rnvs7mpdwpxi3nyb9qh-python-pyzmq-22.3.0/lib:/gnu/store/x5lh9v171m43c370g64qxrky8nizl5xr-python-scipy-1.8.0/lib:/gnu/store/kchyiykalfi0y003w2y722bkf0nl04y5-python-tables-3.6.1/lib:/gnu/store/s3hl12jxz9ybs7nsy7kq7ybzz7qnzmsg-bzip2-1.0.8/lib:/gnu/store/c8isj4jq6knv0icfgr43di6q3nvdzkx7-xz-5.2.5/lib:/gnu/store/4ic6244i3ca4b4rxc2wnrgllsidyishv-file-5.39/lib:/gnu/store/690qz3fg334dpwn3pn6k59n4wc943p2b-gawk-5.1.0/lib:/gnu/store/rc781v4k0drhaqn90xfwwpspki5x0bvf-binutils-2.37/lib:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/lib:/gnu/store/4jdghmc65q7i7ib89zmvq66l0ghf7jc4-glibc-2.33-static/lib:/gnu/store/fnr1z6xsan0437r0yg48d0y8k32kqxby-glibc-utf8-locales-2.33/lib:/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/lib:/gnu/store/kw41zfr5s3ay2xva287lcpgzqa7bhvh1-python-pyparsing-3.0.6/lib:/gnu/store/pn730yy9x9kkf4zwsqlwnm3rl984jw29-python-matplotlib-3.5.2/lib:/gnu/store/bkbggdglf06i51j4ll80wr8a8wxs9hp2-python-numexpr-2.7.3/lib:/gnu/store/mwbawcjdsmg13jjw0315z99sp88n4rd4-python-wxpython-4.0.7.post1/lib:/gnu/store/akhfk7wq2i8bkxlv8i6ra10cy0b7iq6l-python-3.9.9-tk/lib:/gnu/store/3bjjwwwbniv92j0cg8kp1h5k2q3c42n3-python-six-1.16.0/lib:/gnu/store/wkrmii2s5a5l1wliz9cwj7qgkgiqm6jn-python-pytz-2022.1/lib:/gnu/store/iffaxh1y899wdh62f14wbmrnvvcq169j-python-pygobject-3.40.1/lib:/gnu/store/plcn48kpwwd7id02i38d6sl5j5lz569c-python-pillow-9.0.0/lib:/gnu/store/kxlnph6hn0clsqbbf7b0f61hw51ak2g2-python-packaging-21.3/lib:/gnu/store/81vgc9yqfwaz42yfqw8v5fk2xivw67jx-python-kiwisolver-1.0.1/lib:/gnu/store/zlg7s86frmvbyf27627h0lgy54lwrkl9-python-fonttools-4.28.5/lib:/gnu/store/xs8pxa4rr2zkb2hr5nhkxr7ijxxgmqna-python-dateutil-2.8.2/lib:/gnu/store/rlm066wjz6mk1771yl2fva6scpwfp04x-python-cycler-0.10.0/lib:/gnu/store/sgs95j3njwkkw752iy4i8rycn37cs69z-python-certifi-2021.10.8/lib:/gnu/store/6zsi1abj9sj5ydmrajgds6bk7kkym19n-python-cairocffi-1.2.0/lib:/gnu/store/g73j8zgr13dnxrfggwx0z6bpadbz2ymq-gobject-introspection-1.66.1/lib:/gnu/store/wgqhlc12qvlwiklam7hz2r311fdcqfim-libffi-3.3/lib:/gnu/store/96srhmpmxa20wmsck95g3iq4hb3lz4a0-glib-2.70.2/lib:/gnu/store/wpms391jrhhs74smgxkpvzdz2n1ny7wl-python-olefile-0.46/lib:/gnu/store/iz2yzb63glbc0llfxh9dblyprp3a7vzb-python-xcffib-0.11.1/lib:/gnu/store/5583c2za2jsn9g6az79rnksgvigwnsk7-util-linux-2.37.2-lib/lib:/gnu/store/di5bqb45hi5lvp2q08hlxqjdcl9phjb1-pcre-8.45/lib:/gnu/store/4hzdy7w8mnxpi3054m46xd00ixqfhb6g-python-cffi-1.14.4/lib:/gnu/store/1mdg7xc4zx0i9s0kd0hwwq98bgab51s1-python-pycparser-2.21/lib' environment variable `GUIX_LOCPATH' set to `/gnu/store/fnr1z6xsan0437r0yg48d0y8k32kqxby-glibc-utf8-locales-2.33/lib/locale' environment variable `GI_TYPELIB_PATH' set to `/gnu/store/g73j8zgr13dnxrfggwx0z6bpadbz2ymq-gobject-introspection-1.66.1/lib/girepository-1.0' environment variable `XDG_DATA_DIRS' set to `/gnu/store/hm6dlgzkqz33fbiba07jjh8yzdikn7pp-boost-1.77.0/share:/gnu/store/ryhsn2ipbg35g3jnjxf867flz4x79xkx-c-blosc-1.21.1/share:/gnu/store/pbs0gsb14w85ix7c5s0d894ywxbrgj0k-gsl-2.7/share:/gnu/store/imz1fhpcg603a4ny7k9yla72d6y302aw-hdf5-1.10.7/share:/gnu/store/f0ymak6hcipdq7ck7978yprad5mwpafn-hdf5-blosc-1.0.0/share:/gnu/store/akfnv4b78fzwikdp4jld819vh389i8z2-python-cython-0.29.24/share:/gnu/store/8qv5kb2fgm4c3bf70zcg9l6hkf3qzpw9-zlib-1.2.11/share:/gnu/store/5f92vxq7g120bpns2nxzi1rgwd9y2xj3-python-numpy-1.21.6/share:/gnu/store/j2nad0dk0385jg91a4jvghjn57p6z8lx-python-pycurl-7.43.0.5/share:/gnu/store/x0281pavd14z9rnvs7mpdwpxi3nyb9qh-python-pyzmq-22.3.0/share:/gnu/store/x5lh9v171m43c370g64qxrky8nizl5xr-python-scipy-1.8.0/share:/gnu/store/kchyiykalfi0y003w2y722bkf0nl04y5-python-tables-3.6.1/share:/gnu/store/g2ajyl8xk9aarxrgjbng2hkj3qm2v0z2-tar-1.34/share:/gnu/store/iixwcv3k49ks1rf34pjgfzmzyhhgwng3-gzip-1.10/share:/gnu/store/s3hl12jxz9ybs7nsy7kq7ybzz7qnzmsg-bzip2-1.0.8/share:/gnu/store/c8isj4jq6knv0icfgr43di6q3nvdzkx7-xz-5.2.5/share:/gnu/store/4ic6244i3ca4b4rxc2wnrgllsidyishv-file-5.39/share:/gnu/store/ahmmvw21p11ik80lg1f953y7fd8bqkjm-diffutils-3.8/share:/gnu/store/z39hnrwds1dgcbpfgj8dnv2cngjb2xbl-patch-2.7.6/share:/gnu/store/39rsx3nl4c31952jybbjb8d6idr5hx7r-findutils-4.8.0/share:/gnu/store/690qz3fg334dpwn3pn6k59n4wc943p2b-gawk-5.1.0/share:/gnu/store/wxgv6i8g0p24q5gcyzd0yr07s8kn9680-sed-4.8/share:/gnu/store/xjwp2hsd9256icjjybfrmznppjicywf6-grep-3.6/share:/gnu/store/d251rfgc9nm2clzffzhgiipdvfvzkvwi-coreutils-8.32/share:/gnu/store/55cbpsi18mahg131nmiya6km5b4mscfa-make-4.3/share:/gnu/store/4y5m9lb8k3qkb1y9m02sw9w9a6hacd16-bash-minimal-5.1.8/share:/gnu/store/rc781v4k0drhaqn90xfwwpspki5x0bvf-binutils-2.37/share:/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/share:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/share:/gnu/store/4jdghmc65q7i7ib89zmvq66l0ghf7jc4-glibc-2.33-static/share:/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/share:/gnu/store/kw41zfr5s3ay2xva287lcpgzqa7bhvh1-python-pyparsing-3.0.6/share:/gnu/store/pn730yy9x9kkf4zwsqlwnm3rl984jw29-python-matplotlib-3.5.2/share:/gnu/store/bkbggdglf06i51j4ll80wr8a8wxs9hp2-python-numexpr-2.7.3/share:/gnu/store/6mjww4iz4xdan74d5bbjfh7il8rngfkk-linux-libre-headers-5.10.35/share:/gnu/store/mwbawcjdsmg13jjw0315z99sp88n4rd4-python-wxpython-4.0.7.post1/share:/gnu/store/akhfk7wq2i8bkxlv8i6ra10cy0b7iq6l-python-3.9.9-tk/share:/gnu/store/3bjjwwwbniv92j0cg8kp1h5k2q3c42n3-python-six-1.16.0/share:/gnu/store/wkrmii2s5a5l1wliz9cwj7qgkgiqm6jn-python-pytz-2022.1/share:/gnu/store/plcn48kpwwd7id02i38d6sl5j5lz569c-python-pillow-9.0.0/share:/gnu/store/kxlnph6hn0clsqbbf7b0f61hw51ak2g2-python-packaging-21.3/share:/gnu/store/81vgc9yqfwaz42yfqw8v5fk2xivw67jx-python-kiwisolver-1.0.1/share:/gnu/store/zlg7s86frmvbyf27627h0lgy54lwrkl9-python-fonttools-4.28.5/share:/gnu/store/xs8pxa4rr2zkb2hr5nhkxr7ijxxgmqna-python-dateutil-2.8.2/share:/gnu/store/rlm066wjz6mk1771yl2fva6scpwfp04x-python-cycler-0.10.0/share:/gnu/store/sgs95j3njwkkw752iy4i8rycn37cs69z-python-certifi-2021.10.8/share:/gnu/store/6zsi1abj9sj5ydmrajgds6bk7kkym19n-python-cairocffi-1.2.0/share:/gnu/store/g73j8zgr13dnxrfggwx0z6bpadbz2ymq-gobject-introspection-1.66.1/share:/gnu/store/wgqhlc12qvlwiklam7hz2r311fdcqfim-libffi-3.3/share:/gnu/store/96srhmpmxa20wmsck95g3iq4hb3lz4a0-glib-2.70.2/share:/gnu/store/wpms391jrhhs74smgxkpvzdz2n1ny7wl-python-olefile-0.46/share:/gnu/store/iz2yzb63glbc0llfxh9dblyprp3a7vzb-python-xcffib-0.11.1/share:/gnu/store/5583c2za2jsn9g6az79rnksgvigwnsk7-util-linux-2.37.2-lib/share:/gnu/store/di5bqb45hi5lvp2q08hlxqjdcl9phjb1-pcre-8.45/share:/gnu/store/4hzdy7w8mnxpi3054m46xd00ixqfhb6g-python-cffi-1.14.4/share:/gnu/store/1mdg7xc4zx0i9s0kd0hwwq98bgab51s1-python-pycparser-2.21/share' environment variable `GIO_EXTRA_MODULES' unset phase `set-paths' succeeded after 0.0 seconds starting phase `install-locale' using 'en_US.utf8' locale for category "LC_ALL" phase `install-locale' succeeded after 0.0 seconds starting phase `unpack' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/setup.py' -> `./setup.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/MANIFEST.in' -> `./MANIFEST.in' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/.gitlab-ci.yml' -> `./.gitlab-ci.yml' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/README.md' -> `./README.md' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/.gitignore' -> `./.gitignore' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/.travis.yml' -> `./.travis.yml' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/.pre-commit-config.yaml' -> `./.pre-commit-config.yaml' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/LICENSE' -> `./LICENSE' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/format/tped.fmt' -> `./resources/format/tped.fmt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/format/rsname.fmt' -> `./resources/format/rsname.fmt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/format/plink.fmt' -> `./resources/format/plink.fmt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/format/MAF.fmt' -> `./resources/format/MAF.fmt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/format/twoalleles.fmt' -> `./resources/format/twoalleles.fmt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/format/pileup_indel.fmt' -> `./resources/format/pileup_indel.fmt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/format/ANNOVAR_variant_function.fmt' -> `./resources/format/ANNOVAR_variant_function.fmt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/format/basic.fmt' -> `./resources/format/basic.fmt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/format/ANNOVAR_exonic_variant_function.fmt' -> `./resources/format/ANNOVAR_exonic_variant_function.fmt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/format/CASAVA18_indels.fmt' -> `./resources/format/CASAVA18_indels.fmt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/format/csv.fmt' -> `./resources/format/csv.fmt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/format/CASAVA18_snps.fmt' -> `./resources/format/CASAVA18_snps.fmt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/format/map.fmt' -> `./resources/format/map.fmt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/format/polyphen2.fmt' -> `./resources/format/polyphen2.fmt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/format/vcf.fmt' -> `./resources/format/vcf.fmt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/format/CGA.fmt' -> `./resources/format/CGA.fmt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/format/ANNOVAR.fmt' -> `./resources/format/ANNOVAR.fmt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/simulation/Peng2011_srv.pipeline' -> `./resources/simulation/Peng2011_srv.pipeline' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/simulation/Lineage.pipeline' -> `./resources/simulation/Lineage.pipeline' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/simulation/Peng2014_ex2.pipeline' -> `./resources/simulation/Peng2014_ex2.pipeline' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/simulation/Peng2014_ex1.pipeline' -> `./resources/simulation/Peng2014_ex1.pipeline' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/simulation/VST_srv.py' -> `./resources/simulation/VST_srv.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/simulation/Lineage.py' -> `./resources/simulation/Lineage.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/pipeline/illumina.pipeline' -> `./resources/pipeline/illumina.pipeline' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/pipeline/bwa_gatk33_hg19.pipeline' -> `./resources/pipeline/bwa_gatk33_hg19.pipeline' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/pipeline/KING.pipeline' -> `./resources/pipeline/KING.pipeline' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/pipeline/mosaik_gatk23_align.pipeline' -> `./resources/pipeline/mosaik_gatk23_align.pipeline' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/pipeline/bwa_gatk28_hg19.pipeline' -> `./resources/pipeline/bwa_gatk28_hg19.pipeline' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/pipeline/bwa_gatk33_b37.pipeline' -> `./resources/pipeline/bwa_gatk33_b37.pipeline' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/pipeline/anno_utils.pipeline' -> `./resources/pipeline/anno_utils.pipeline' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/pipeline/ANNOVAR.pipeline' -> `./resources/pipeline/ANNOVAR.pipeline' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/pipeline/import_vcf.pipeline' -> `./resources/pipeline/import_vcf.pipeline' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/pipeline/DNASeq_tools.py' -> `./resources/pipeline/DNASeq_tools.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/pipeline/transmission.pipeline' -> `./resources/pipeline/transmission.pipeline' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/pipeline/snpEff.pipeline' -> `./resources/pipeline/snpEff.pipeline' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/pipeline/bwa_gatk28_b37.pipeline' -> `./resources/pipeline/bwa_gatk28_b37.pipeline' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/ccdsGene_exon_hg19-20111206.ann' -> `./resources/annotation/ccdsGene_exon_hg19-20111206.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/hapmap_LWK_freq-hg18_20100817.ann' -> `./resources/annotation/hapmap_LWK_freq-hg18_20100817.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/EntrezGene2RefSeq-20170919.ann' -> `./resources/annotation/EntrezGene2RefSeq-20170919.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/clinvar-20150929.ann' -> `./resources/annotation/clinvar-20150929.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/clinvar-20171002.ann' -> `./resources/annotation/clinvar-20171002.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/refGene-hg19_20110909.ann' -> `./resources/annotation/refGene-hg19_20110909.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/hapmap_CEU_freq-hg18_20100817.ann' -> `./resources/annotation/hapmap_CEU_freq-hg18_20100817.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbSNP-hg19_135-1.ann' -> `./resources/annotation/dbSNP-hg19_135-1.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbNSFP-hg18_hg19_2_7.ann' -> `./resources/annotation/dbNSFP-hg18_hg19_2_7.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/knownGene-hg19_20121219.ann' -> `./resources/annotation/knownGene-hg19_20121219.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/hapmap_ASW_freq-hg18_20100817.ann' -> `./resources/annotation/hapmap_ASW_freq-hg18_20100817.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/clinvar-20160107.ann' -> `./resources/annotation/clinvar-20160107.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/LCR-hg19_20090320.ann' -> `./resources/annotation/LCR-hg19_20090320.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/knownGene-hg19_20110909.ann' -> `./resources/annotation/knownGene-hg19_20110909.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/cytoBand-hg18_20111216.ann' -> `./resources/annotation/cytoBand-hg18_20111216.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/ESP-6500SI-V2-SSA137.ann' -> `./resources/annotation/ESP-6500SI-V2-SSA137.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/ccdsGene_exon_hg38-20171008.ann' -> `./resources/annotation/ccdsGene_exon_hg38-20171008.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/DGV-hg38_20160831.ann' -> `./resources/annotation/DGV-hg38_20160831.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/DGV-hg18_20130723.ann' -> `./resources/annotation/DGV-hg18_20130723.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/ccdsGene-hg19_20111206.ann' -> `./resources/annotation/ccdsGene-hg19_20111206.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbNSFP_gene-2_4.ann' -> `./resources/annotation/dbNSFP_gene-2_4.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbSNP-hg19_135.ann' -> `./resources/annotation/dbSNP-hg19_135.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/CosmicNonCodingVariants-v82_20170801.ann' -> `./resources/annotation/CosmicNonCodingVariants-v82_20170801.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/refGene_exon-hg18_20110909.ann' -> `./resources/annotation/refGene_exon-hg18_20110909.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/refGene-hg18_20110909.ann' -> `./resources/annotation/refGene-hg18_20110909.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbNSFP_gene-3_5a.ann' -> `./resources/annotation/dbNSFP_gene-3_5a.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/refGene-hg19_20130904.ann' -> `./resources/annotation/refGene-hg19_20130904.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/gwasCatalog-hg19_20111220.ann' -> `./resources/annotation/gwasCatalog-hg19_20111220.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/refGene_exon-mm10_20141201.ann' -> `./resources/annotation/refGene_exon-mm10_20141201.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/cytoBand-hg38_20140810.ann' -> `./resources/annotation/cytoBand-hg38_20140810.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbscSNV-hg38_20150412.ann' -> `./resources/annotation/dbscSNV-hg38_20150412.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbSNP-hg19_131.ann' -> `./resources/annotation/dbSNP-hg19_131.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/refGene_exon-mm10_20171008.ann' -> `./resources/annotation/refGene_exon-mm10_20171008.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/CancerGeneCensus-20130711.ann' -> `./resources/annotation/CancerGeneCensus-20130711.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/ccdsGene_exon-hg38_20171008.ann' -> `./resources/annotation/ccdsGene_exon-hg38_20171008.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/refGene_exon-hg19_20130904.ann' -> `./resources/annotation/refGene_exon-hg19_20130904.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/Illumina_NRCE-20130307.ann' -> `./resources/annotation/Illumina_NRCE-20130307.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbSNP-hg18_130.ann' -> `./resources/annotation/dbSNP-hg18_130.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/CosmicNonCodingVariants-v67_241013.ann' -> `./resources/annotation/CosmicNonCodingVariants-v67_241013.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbSNP-hg19_137.ann' -> `./resources/annotation/dbSNP-hg19_137.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/DGV-hg19_20160831.ann' -> `./resources/annotation/DGV-hg19_20160831.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/HGNC-20170920.ann' -> `./resources/annotation/HGNC-20170920.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/knownGene-hg18_20110909.ann' -> `./resources/annotation/knownGene-hg18_20110909.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbNSFP-hg18_hg19_2_0b4.ann' -> `./resources/annotation/dbNSFP-hg18_hg19_2_0b4.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/knownGene_exon-hg18_20110909.ann' -> `./resources/annotation/knownGene_exon-hg18_20110909.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbNSFP-hg18_hg19_1_3.ann' -> `./resources/annotation/dbNSFP-hg18_hg19_1_3.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/knownGene_exon-hg19_20130904.ann' -> `./resources/annotation/knownGene_exon-hg19_20130904.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbNSFP-hg18_hg19_2_9.ann' -> `./resources/annotation/dbNSFP-hg18_hg19_2_9.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/EntrezGene-20131028.ann' -> `./resources/annotation/EntrezGene-20131028.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbNSFP_gene-2_3.ann' -> `./resources/annotation/dbNSFP_gene-2_3.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/ExAC.ann' -> `./resources/annotation/ExAC.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/CosmicNonCodingVariants-v61_260912.ann' -> `./resources/annotation/CosmicNonCodingVariants-v61_260912.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/CosmicMutantExport-v67_241013.ann' -> `./resources/annotation/CosmicMutantExport-v67_241013.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/knownGene-hg38_20160328.ann' -> `./resources/annotation/knownGene-hg38_20160328.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/thousandGenomes-hg19_v3_20101123.ann' -> `./resources/annotation/thousandGenomes-hg19_v3_20101123.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/cytoBand-hg19_20111216.ann' -> `./resources/annotation/cytoBand-hg19_20111216.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/refGene_exon-hg19_20110909.ann' -> `./resources/annotation/refGene_exon-hg19_20110909.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/CancerGeneCensus-20120315.ann' -> `./resources/annotation/CancerGeneCensus-20120315.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/thousandGenomes-hg19_v5b_20130502.ann' -> `./resources/annotation/thousandGenomes-hg19_v5b_20130502.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/refGene-hg38_20171008.ann' -> `./resources/annotation/refGene-hg38_20171008.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/hapmap_GIH_freq-hg18_20100817.ann' -> `./resources/annotation/hapmap_GIH_freq-hg18_20100817.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/EntrezGene-20170919.ann' -> `./resources/annotation/EntrezGene-20170919.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/phastCons-hg38_20150913.ann' -> `./resources/annotation/phastCons-hg38_20150913.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbNSFP-hg38_3_5a.ann' -> `./resources/annotation/dbNSFP-hg38_3_5a.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/hapmap_MKK_freq-hg18_20100817.ann' -> `./resources/annotation/hapmap_MKK_freq-hg18_20100817.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/refGene-mm10_20141201.ann' -> `./resources/annotation/refGene-mm10_20141201.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/EntrezGene2RefSeq-20131028.ann' -> `./resources/annotation/EntrezGene2RefSeq-20131028.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/knownGene-hg18_20121219.ann' -> `./resources/annotation/knownGene-hg18_20121219.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbNSFP-hg18_hg19_2_4.ann' -> `./resources/annotation/dbNSFP-hg18_hg19_2_4.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbSNP-hg19_138.ann' -> `./resources/annotation/dbSNP-hg19_138.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/hapmap_TSI_freq-hg18_20100817.ann' -> `./resources/annotation/hapmap_TSI_freq-hg18_20100817.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/DGV-hg19_20130723.ann' -> `./resources/annotation/DGV-hg19_20130723.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbSNP-hg19_132.ann' -> `./resources/annotation/dbSNP-hg19_132.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/CancerGeneCensus-20170912.ann' -> `./resources/annotation/CancerGeneCensus-20170912.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbNSFP_gene-2_0.ann' -> `./resources/annotation/dbNSFP_gene-2_0.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/clinvar-20160104.ann' -> `./resources/annotation/clinvar-20160104.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/ccdsGene_exon-hg19_20130904.ann' -> `./resources/annotation/ccdsGene_exon-hg19_20130904.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/CosmicCodingMuts-v82_20170801.ann' -> `./resources/annotation/CosmicCodingMuts-v82_20170801.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbNSFP_gene-2_1.ann' -> `./resources/annotation/dbNSFP_gene-2_1.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/hapmap_CHB_freq-hg18_20100817.ann' -> `./resources/annotation/hapmap_CHB_freq-hg18_20100817.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/HGNC-20131029.ann' -> `./resources/annotation/HGNC-20131029.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/ccdsGene-hg19_20110909.ann' -> `./resources/annotation/ccdsGene-hg19_20110909.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/gwasCatalog-hg19_20140112.ann' -> `./resources/annotation/gwasCatalog-hg19_20140112.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/hapmap_YRI_freq-hg18_20100817.ann' -> `./resources/annotation/hapmap_YRI_freq-hg18_20100817.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/ExAC-hg19_r0.2.ann' -> `./resources/annotation/ExAC-hg19_r0.2.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/ccdsGene-hg38_20171008.ann' -> `./resources/annotation/ccdsGene-hg38_20171008.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/hapmap_CHD_freq-hg18_20100817.ann' -> `./resources/annotation/hapmap_CHD_freq-hg18_20100817.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/CosmicMutantExport-v61_260912.ann' -> `./resources/annotation/CosmicMutantExport-v61_260912.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/CosmicMutantExport-v82_20170803.ann' -> `./resources/annotation/CosmicMutantExport-v82_20170803.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/phastConsElements-hg38_20150913.ann' -> `./resources/annotation/phastConsElements-hg38_20150913.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbNSFP-hg18_hg19_1.1_2.ann' -> `./resources/annotation/dbNSFP-hg18_hg19_1.1_2.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbSNP-hg38_143.ann' -> `./resources/annotation/dbSNP-hg38_143.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/knownGene_exon-hg19_20110909.ann' -> `./resources/annotation/knownGene_exon-hg19_20110909.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbNSFP-hg18_hg19_2_1.ann' -> `./resources/annotation/dbNSFP-hg18_hg19_2_1.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/ccdsGene_hg19-20111206.ann' -> `./resources/annotation/ccdsGene_hg19-20111206.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/keggPathway-20110823.ann' -> `./resources/annotation/keggPathway-20110823.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/CosmicCodingMuts-v61_260912.ann' -> `./resources/annotation/CosmicCodingMuts-v61_260912.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/refGene-hg38_20170201.ann' -> `./resources/annotation/refGene-hg38_20170201.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/clinvar-20150804.ann' -> `./resources/annotation/clinvar-20150804.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/phastCons-hg19_20130322.ann' -> `./resources/annotation/phastCons-hg19_20130322.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/ccdsGene_exon-hg19_20110909.ann' -> `./resources/annotation/ccdsGene_exon-hg19_20110909.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/CosmicCodingMuts-v67_20131024.ann' -> `./resources/annotation/CosmicCodingMuts-v67_20131024.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbNSFP_light-hg18_hg19_1_3.ann' -> `./resources/annotation/dbNSFP_light-hg18_hg19_1_3.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/phastConsElements-hg19_20130622.ann' -> `./resources/annotation/phastConsElements-hg19_20130622.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbNSFP-hg18_hg19_2_0.ann' -> `./resources/annotation/dbNSFP-hg18_hg19_2_0.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/hapmap_JPT_freq-hg18_20100817.ann' -> `./resources/annotation/hapmap_JPT_freq-hg18_20100817.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbNSFP_gene-2_7.ann' -> `./resources/annotation/dbNSFP_gene-2_7.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/gwasCatalog-hg38_20171004.ann' -> `./resources/annotation/gwasCatalog-hg38_20171004.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/genomicSuperDups-hg19_20130626.ann' -> `./resources/annotation/genomicSuperDups-hg19_20130626.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/CancerGeneCensus-20111215.ann' -> `./resources/annotation/CancerGeneCensus-20111215.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/ccdsGene-hg19_20130904.ann' -> `./resources/annotation/ccdsGene-hg19_20130904.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/DGV-hg19_20160515.ann' -> `./resources/annotation/DGV-hg19_20160515.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/hapmap_MEX_freq-hg18_20100817.ann' -> `./resources/annotation/hapmap_MEX_freq-hg18_20100817.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbNSFP-hg18_hg19_2_3.ann' -> `./resources/annotation/dbNSFP-hg18_hg19_2_3.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbscSNV-hg19_20141120.ann' -> `./resources/annotation/dbscSNV-hg19_20141120.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/genomicSuperDups-hg38_20141018.ann' -> `./resources/annotation/genomicSuperDups-hg38_20141018.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/knownGene_exon-hg38_20160328.ann' -> `./resources/annotation/knownGene_exon-hg38_20160328.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbNSFP_light-hg18_hg19_1.0_0.ann' -> `./resources/annotation/dbNSFP_light-hg18_hg19_1.0_0.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/knownGene-hg19_20130904.ann' -> `./resources/annotation/knownGene-hg19_20130904.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/dbSNP-hg18_129.ann' -> `./resources/annotation/dbSNP-hg18_129.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/ccdsGene_exon-hg19_20111206.ann' -> `./resources/annotation/ccdsGene_exon-hg19_20111206.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/resources/annotation/phastCons-hg19_20110909.ann' -> `./resources/annotation/phastCons-hg19_20110909.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/.gitlab/issue_templates/bug.md' -> `./.gitlab/issue_templates/bug.md' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/swigpyrun.h' -> `./src/swigpyrun.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/code_style.cfg' -> `./src/code_style.cfg' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/fam_parse.h' -> `./src/libplinkio/fam_parse.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/fam.c' -> `./src/libplinkio/fam.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/file.h' -> `./src/libplinkio/file.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/bed.h' -> `./src/libplinkio/bed.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/csv.h' -> `./src/libplinkio/csv.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/snp_lookup.h' -> `./src/libplinkio/snp_lookup.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/common.h' -> `./src/libplinkio/common.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/snparray.c' -> `./src/libplinkio/snparray.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/bim_parse.h' -> `./src/libplinkio/bim_parse.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/utarray.h' -> `./src/libplinkio/utarray.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/bed.c' -> `./src/libplinkio/bed.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/COPYING' -> `./src/libplinkio/COPYING' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/cplinkio.c' -> `./src/libplinkio/cplinkio.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/bed_header.c' -> `./src/libplinkio/bed_header.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/plinkio.c' -> `./src/libplinkio/plinkio.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/snp_lookup_little.h' -> `./src/libplinkio/snp_lookup_little.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/bim_parse.c' -> `./src/libplinkio/bim_parse.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/bed_header.h' -> `./src/libplinkio/bed_header.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/plinkio.h' -> `./src/libplinkio/plinkio.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/fam_parse.c' -> `./src/libplinkio/fam_parse.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/status.h' -> `./src/libplinkio/status.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/fam.h' -> `./src/libplinkio/fam.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/file.c' -> `./src/libplinkio/file.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/libcsv.c' -> `./src/libplinkio/libcsv.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/snparray.h' -> `./src/libplinkio/snparray.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/bim.h' -> `./src/libplinkio/bim.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/LICENSE' -> `./src/libplinkio/LICENSE' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/bim.c' -> `./src/libplinkio/bim.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/libplinkio/snp_lookup_big.h' -> `./src/libplinkio/snp_lookup_big.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/shell.c' -> `./src/sqlite/shell.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/sqlite3.h' -> `./src/sqlite/sqlite3.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/vt_sqlite3_ext.cpp' -> `./src/sqlite/vt_sqlite3_ext.cpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/sqlite3.c' -> `./src/sqlite/sqlite3.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/sqlite3ext.h' -> `./src/sqlite/sqlite3ext.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/util.c' -> `./src/sqlite/py3/util.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/prepare_protocol.c' -> `./src/sqlite/py3/prepare_protocol.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/prepare_protocol.h' -> `./src/sqlite/py3/prepare_protocol.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/statement.h' -> `./src/sqlite/py3/statement.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/module.c' -> `./src/sqlite/py3/module.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/util.h' -> `./src/sqlite/py3/util.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/sqlitecompat.h' -> `./src/sqlite/py3/sqlitecompat.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/row.h' -> `./src/sqlite/py3/row.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/cursor.h' -> `./src/sqlite/py3/cursor.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/cursor.c' -> `./src/sqlite/py3/cursor.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/connection.h' -> `./src/sqlite/py3/connection.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/connection.c' -> `./src/sqlite/py3/connection.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/statement.c' -> `./src/sqlite/py3/statement.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/microprotocols.h' -> `./src/sqlite/py3/microprotocols.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/cache.h' -> `./src/sqlite/py3/cache.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/microprotocols.c' -> `./src/sqlite/py3/microprotocols.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/row.c' -> `./src/sqlite/py3/row.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/cache.c' -> `./src/sqlite/py3/cache.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py3/module.h' -> `./src/sqlite/py3/module.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/util.c' -> `./src/sqlite/py2/util.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/prepare_protocol.c' -> `./src/sqlite/py2/prepare_protocol.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/prepare_protocol.h' -> `./src/sqlite/py2/prepare_protocol.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/statement.h' -> `./src/sqlite/py2/statement.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/module.c' -> `./src/sqlite/py2/module.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/util.h' -> `./src/sqlite/py2/util.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/sqlitecompat.h' -> `./src/sqlite/py2/sqlitecompat.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/row.h' -> `./src/sqlite/py2/row.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/cursor.h' -> `./src/sqlite/py2/cursor.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/cursor.c' -> `./src/sqlite/py2/cursor.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/connection.h' -> `./src/sqlite/py2/connection.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/connection.c' -> `./src/sqlite/py2/connection.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/statement.c' -> `./src/sqlite/py2/statement.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/microprotocols.h' -> `./src/sqlite/py2/microprotocols.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/cache.h' -> `./src/sqlite/py2/cache.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/microprotocols.c' -> `./src/sqlite/py2/microprotocols.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/row.c' -> `./src/sqlite/py2/row.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/cache.c' -> `./src/sqlite/py2/cache.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/sqlite/py2/module.h' -> `./src/sqlite/py2/module.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/rext/MetaSKAT.PFF.VAT.R' -> `./src/rext/MetaSKAT.PFF.VAT.R' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/rext/MetaSKAT.VAT.R' -> `./src/rext/MetaSKAT.VAT.R' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/cgatools.py' -> `./src/variant_tools/cgatools.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/compare.py' -> `./src/variant_tools/compare.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/checking_asso_result.py' -> `./src/variant_tools/checking_asso_result.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/liftOver.py' -> `./src/variant_tools/liftOver.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/simulation.py' -> `./src/variant_tools/simulation.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/annotation.py' -> `./src/variant_tools/annotation.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/genotypes.h' -> `./src/variant_tools/genotypes.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/fisher2.c' -> `./src/variant_tools/fisher2.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/utils.cpp' -> `./src/variant_tools/utils.cpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/cgatools_wrap.cpp' -> `./src/variant_tools/cgatools_wrap.cpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/variant.py' -> `./src/variant_tools/variant.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/action.cpp' -> `./src/variant_tools/action.cpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/vtools.py' -> `./src/variant_tools/vtools.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/assoTests.h' -> `./src/variant_tools/assoTests.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/exporter.py' -> `./src/variant_tools/exporter.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/cgatools.i' -> `./src/variant_tools/cgatools.i' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/vtools_report.py' -> `./src/variant_tools/vtools_report.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/ucsctools.i' -> `./src/variant_tools/ucsctools.i' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/merge_sort_parallel.py' -> `./src/variant_tools/merge_sort_parallel.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/plinkfile.py' -> `./src/variant_tools/plinkfile.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/pipeline.py' -> `./src/variant_tools/pipeline.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/importer.py' -> `./src/variant_tools/importer.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/assoData.h' -> `./src/variant_tools/assoData.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/site_options.py' -> `./src/variant_tools/site_options.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/ucsctools.py' -> `./src/variant_tools/ucsctools.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/vtools_association_cluster.lsf' -> `./src/variant_tools/vtools_association_cluster.lsf' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/__init__.py' -> `./src/variant_tools/__init__.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/meta.py' -> `./src/variant_tools/meta.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/tester.py' -> `./src/variant_tools/tester.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/lm.cpp' -> `./src/variant_tools/lm.cpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/ucsctools_wrap.cpp' -> `./src/variant_tools/ucsctools_wrap.cpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/action.h' -> `./src/variant_tools/action.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/text_reader.py' -> `./src/variant_tools/text_reader.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/assoTests_wrap.cpp' -> `./src/variant_tools/assoTests_wrap.cpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/lm.h' -> `./src/variant_tools/lm.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/assoTests.py' -> `./src/variant_tools/assoTests.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/plot.py' -> `./src/variant_tools/plot.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/assoData.cpp' -> `./src/variant_tools/assoData.cpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/rtester.py' -> `./src/variant_tools/rtester.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/association_hdf5.py' -> `./src/variant_tools/association_hdf5.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/utils.py' -> `./src/variant_tools/utils.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/project.py' -> `./src/variant_tools/project.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/exporter_reader.py' -> `./src/variant_tools/exporter_reader.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/worker_zmq.py' -> `./src/variant_tools/worker_zmq.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/preprocessor.py' -> `./src/variant_tools/preprocessor.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/assoTests.i' -> `./src/variant_tools/assoTests.i' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/importer_allele_hdf5.py' -> `./src/variant_tools/importer_allele_hdf5.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/accessor.py' -> `./src/variant_tools/accessor.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/vt_sqlite3.py' -> `./src/variant_tools/vt_sqlite3.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/utils.h' -> `./src/variant_tools/utils.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/geno_store.py' -> `./src/variant_tools/geno_store.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/fisher2.h' -> `./src/variant_tools/fisher2.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/genotypes.c' -> `./src/variant_tools/genotypes.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/update.py' -> `./src/variant_tools/update.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/phenotype.py' -> `./src/variant_tools/phenotype.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/association.py' -> `./src/variant_tools/association.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/_version.py' -> `./src/variant_tools/_version.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/vtools_association_cluster.pbs' -> `./src/variant_tools/vtools_association_cluster.pbs' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/variant_tools/io_vcf_read.pyx' -> `./src/variant_tools/io_vcf_read.pyx' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/kxTok.h' -> `./src/ucsc/inc/kxTok.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/dnautil.h' -> `./src/ucsc/inc/dnautil.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/bigBed.h' -> `./src/ucsc/inc/bigBed.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/dystring.h' -> `./src/ucsc/inc/dystring.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/udc.h' -> `./src/ucsc/inc/udc.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/sqlNum.h' -> `./src/ucsc/inc/sqlNum.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/sqlList.h' -> `./src/ucsc/inc/sqlList.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/sig.h' -> `./src/ucsc/inc/sig.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/options.h' -> `./src/ucsc/inc/options.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/portable.h' -> `./src/ucsc/inc/portable.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/localmem.h' -> `./src/ucsc/inc/localmem.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/bigWig.h' -> `./src/ucsc/inc/bigWig.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/common.h' -> `./src/ucsc/inc/common.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/memgfx.h' -> `./src/ucsc/inc/memgfx.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/zlibFace.h' -> `./src/ucsc/inc/zlibFace.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/bits.h' -> `./src/ucsc/inc/bits.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/mime.h' -> `./src/ucsc/inc/mime.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/gfxPoly.h' -> `./src/ucsc/inc/gfxPoly.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/filePath.h' -> `./src/ucsc/inc/filePath.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/errabort.h' -> `./src/ucsc/inc/errabort.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/fuzzyFind.h' -> `./src/ucsc/inc/fuzzyFind.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/base64.h' -> `./src/ucsc/inc/base64.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/hmmstats.h' -> `./src/ucsc/inc/hmmstats.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/htmshell.h' -> `./src/ucsc/inc/htmshell.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/bwgInternal.h' -> `./src/ucsc/inc/bwgInternal.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/obscure.h' -> `./src/ucsc/inc/obscure.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/binRange.h' -> `./src/ucsc/inc/binRange.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/memalloc.h' -> `./src/ucsc/inc/memalloc.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/tokenizer.h' -> `./src/ucsc/inc/tokenizer.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/verbose.h' -> `./src/ucsc/inc/verbose.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/asParse.h' -> `./src/ucsc/inc/asParse.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/hash.h' -> `./src/ucsc/inc/hash.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/net.h' -> `./src/ucsc/inc/net.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/dlist.h' -> `./src/ucsc/inc/dlist.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/rangeTree.h' -> `./src/ucsc/inc/rangeTree.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/pipeline.h' -> `./src/ucsc/inc/pipeline.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/basicBed.h' -> `./src/ucsc/inc/basicBed.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/psl.h' -> `./src/ucsc/inc/psl.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/rbTree.h' -> `./src/ucsc/inc/rbTree.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/vcf.h' -> `./src/ucsc/inc/vcf.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/bbiFile.h' -> `./src/ucsc/inc/bbiFile.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/https.h' -> `./src/ucsc/inc/https.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/bamFile.h' -> `./src/ucsc/inc/bamFile.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/aliType.h' -> `./src/ucsc/inc/aliType.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/cirTree.h' -> `./src/ucsc/inc/cirTree.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/internet.h' -> `./src/ucsc/inc/internet.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/cheapcgi.h' -> `./src/ucsc/inc/cheapcgi.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/bPlusTree.h' -> `./src/ucsc/inc/bPlusTree.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/linefile.h' -> `./src/ucsc/inc/linefile.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/dnaseq.h' -> `./src/ucsc/inc/dnaseq.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/inc/regexHelper.h' -> `./src/ucsc/inc/regexHelper.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/dlist.c' -> `./src/ucsc/lib/dlist.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/memalloc.c' -> `./src/ucsc/lib/memalloc.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/portimpl.h' -> `./src/ucsc/lib/portimpl.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/sqlList.c' -> `./src/ucsc/lib/sqlList.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/servcl.c' -> `./src/ucsc/lib/servcl.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/dystring.c' -> `./src/ucsc/lib/dystring.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/base64.c' -> `./src/ucsc/lib/base64.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/cheapcgi.c' -> `./src/ucsc/lib/cheapcgi.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/tokenizer.c' -> `./src/ucsc/lib/tokenizer.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/osunix.c' -> `./src/ucsc/lib/osunix.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/kxTok.c' -> `./src/ucsc/lib/kxTok.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/psl.c' -> `./src/ucsc/lib/psl.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/cirTree.c' -> `./src/ucsc/lib/cirTree.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/sqlNum.c' -> `./src/ucsc/lib/sqlNum.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/vcf.c' -> `./src/ucsc/lib/vcf.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/htmshell.c' -> `./src/ucsc/lib/htmshell.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/common.c' -> `./src/ucsc/lib/common.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/regexHelper.c' -> `./src/ucsc/lib/regexHelper.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/basicBed.c' -> `./src/ucsc/lib/basicBed.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/bigBed.c' -> `./src/ucsc/lib/bigBed.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/aliType.c' -> `./src/ucsc/lib/aliType.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/servmsII.c' -> `./src/ucsc/lib/servmsII.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/servBrcMcw.c' -> `./src/ucsc/lib/servBrcMcw.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/verbose.c' -> `./src/ucsc/lib/verbose.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/bPlusTree.c' -> `./src/ucsc/lib/bPlusTree.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/obscure.c' -> `./src/ucsc/lib/obscure.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/asParse.c' -> `./src/ucsc/lib/asParse.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/udc.c' -> `./src/ucsc/lib/udc.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/bamFile.c' -> `./src/ucsc/lib/bamFile.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/rbTree.c' -> `./src/ucsc/lib/rbTree.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/binRange.c' -> `./src/ucsc/lib/binRange.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/bwgQuery.c' -> `./src/ucsc/lib/bwgQuery.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/internet.c' -> `./src/ucsc/lib/internet.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/filePath.c' -> `./src/ucsc/lib/filePath.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/dnautil.c' -> `./src/ucsc/lib/dnautil.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/net.c' -> `./src/ucsc/lib/net.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/ffAli.c' -> `./src/ucsc/lib/ffAli.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/servpws.c' -> `./src/ucsc/lib/servpws.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/servcis.c' -> `./src/ucsc/lib/servcis.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/portimpl.c' -> `./src/ucsc/lib/portimpl.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/rangeTree.c' -> `./src/ucsc/lib/rangeTree.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/bits.c' -> `./src/ucsc/lib/bits.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/wildcmp.c' -> `./src/ucsc/lib/wildcmp.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/localmem.c' -> `./src/ucsc/lib/localmem.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/https.c' -> `./src/ucsc/lib/https.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/intExp.c' -> `./src/ucsc/lib/intExp.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/hmmstats.c' -> `./src/ucsc/lib/hmmstats.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/hash.c' -> `./src/ucsc/lib/hash.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/zlibFace.c' -> `./src/ucsc/lib/zlibFace.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/pipeline.c' -> `./src/ucsc/lib/pipeline.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/mime.c' -> `./src/ucsc/lib/mime.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/servCrunx.c' -> `./src/ucsc/lib/servCrunx.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/errabort.c' -> `./src/ucsc/lib/errabort.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/bbiRead.c' -> `./src/ucsc/lib/bbiRead.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/lib/linefile.c' -> `./src/ucsc/lib/linefile.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/tabix/knetfile.h' -> `./src/ucsc/tabix/knetfile.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/tabix/ksort.h' -> `./src/ucsc/tabix/ksort.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/tabix/kseq.h' -> `./src/ucsc/tabix/kseq.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/tabix/kstring.h' -> `./src/ucsc/tabix/kstring.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/tabix/knetfile.c' -> `./src/ucsc/tabix/knetfile.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/tabix/kstring.c' -> `./src/ucsc/tabix/kstring.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/tabix/index.c' -> `./src/ucsc/tabix/index.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/tabix/khash.h' -> `./src/ucsc/tabix/khash.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/tabix/bam_endian.h' -> `./src/ucsc/tabix/bam_endian.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/tabix/bedidx.c' -> `./src/ucsc/tabix/bedidx.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/tabix/tabix.h' -> `./src/ucsc/tabix/tabix.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/bgzf.c' -> `./src/ucsc/samtools/bgzf.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/razf.h' -> `./src/ucsc/samtools/razf.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/bam_aux.c' -> `./src/ucsc/samtools/bam_aux.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/sam.h' -> `./src/ucsc/samtools/sam.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/sam_header.c' -> `./src/ucsc/samtools/sam_header.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/faidx.c' -> `./src/ucsc/samtools/faidx.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/sam_header.h' -> `./src/ucsc/samtools/sam_header.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/razf.c' -> `./src/ucsc/samtools/razf.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/kstring.h' -> `./src/ucsc/samtools/kstring.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/bam_index.c' -> `./src/ucsc/samtools/bam_index.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/bgzf.h' -> `./src/ucsc/samtools/bgzf.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/bam_pileup.c' -> `./src/ucsc/samtools/bam_pileup.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/sam.c' -> `./src/ucsc/samtools/sam.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/faidx.h' -> `./src/ucsc/samtools/faidx.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/bam.c' -> `./src/ucsc/samtools/bam.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/bam.h' -> `./src/ucsc/samtools/bam.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/ucsc/samtools/bam_import.c' -> `./src/ucsc/samtools/bam_import.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/core.hpp' -> `./src/cgatools/core.hpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/reference/range.hpp' -> `./src/cgatools/reference/range.hpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/reference/GeneDataStore.cpp' -> `./src/cgatools/reference/GeneDataStore.cpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/reference/ChromosomeIdField.cpp' -> `./src/cgatools/reference/ChromosomeIdField.cpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/reference/CompactDnaSequence.cpp' -> `./src/cgatools/reference/CompactDnaSequence.cpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/reference/RepeatMaskerStore.hpp' -> `./src/cgatools/reference/RepeatMaskerStore.hpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/reference/ChromosomeIdField.hpp' -> `./src/cgatools/reference/ChromosomeIdField.hpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/reference/GeneDataStore.hpp' -> `./src/cgatools/reference/GeneDataStore.hpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/reference/CrrFileWriter.hpp' -> `./src/cgatools/reference/CrrFileWriter.hpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/reference/CompactDnaSequence.hpp' -> `./src/cgatools/reference/CompactDnaSequence.hpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/reference/RangeAnnotationStore.hpp' -> `./src/cgatools/reference/RangeAnnotationStore.hpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/reference/CrrFile.hpp' -> `./src/cgatools/reference/CrrFile.hpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/reference/CrrFileWriter.cpp' -> `./src/cgatools/reference/CrrFileWriter.cpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/reference/CrrFile.cpp' -> `./src/cgatools/reference/CrrFile.cpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/DelimitedFile.hpp' -> `./src/cgatools/util/DelimitedFile.hpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/StringSet.hpp' -> `./src/cgatools/util/StringSet.hpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/DelimitedFile.cpp' -> `./src/cgatools/util/DelimitedFile.cpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/parse.hpp' -> `./src/cgatools/util/parse.hpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/Exception.hpp' -> `./src/cgatools/util/Exception.hpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/RangeIntersector.hpp' -> `./src/cgatools/util/RangeIntersector.hpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/Md5.cpp' -> `./src/cgatools/util/Md5.cpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/BaseUtil.cpp' -> `./src/cgatools/util/BaseUtil.cpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/Exception.cpp' -> `./src/cgatools/util/Exception.cpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/GenericHistogram.hpp' -> `./src/cgatools/util/GenericHistogram.hpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/StringSet.cpp' -> `./src/cgatools/util/StringSet.cpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/DelimitedLineParser.cpp' -> `./src/cgatools/util/DelimitedLineParser.cpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/BaseUtil.hpp' -> `./src/cgatools/util/BaseUtil.hpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/GenericHistogram.cpp' -> `./src/cgatools/util/GenericHistogram.cpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/Streams.hpp' -> `./src/cgatools/util/Streams.hpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/RangeSet.hpp' -> `./src/cgatools/util/RangeSet.hpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/DelimitedLineParser.hpp' -> `./src/cgatools/util/DelimitedLineParser.hpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/parse.cpp' -> `./src/cgatools/util/parse.cpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/Md5.hpp' -> `./src/cgatools/util/Md5.hpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/Streams.cpp' -> `./src/cgatools/util/Streams.cpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/RangeSet.cpp' -> `./src/cgatools/util/RangeSet.cpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/cgatools/util/IndirectComparator.hpp' -> `./src/cgatools/util/IndirectComparator.hpp' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/hdf5-blosc/blosc_filter.h' -> `./src/hdf5-blosc/blosc_filter.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/hdf5-blosc/blosc_plugin.h' -> `./src/hdf5-blosc/blosc_plugin.h' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/hdf5-blosc/blosc_plugin.c' -> `./src/hdf5-blosc/blosc_plugin.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/src/hdf5-blosc/blosc_filter.c' -> `./src/hdf5-blosc/blosc_filter.c' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/md5_annoDB.py' -> `./development/md5_annoDB.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/monitor.py' -> `./development/monitor.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/manage_resource.py' -> `./development/manage_resource.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/conda/build.sh' -> `./development/conda/build.sh' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/conda/meta.yaml' -> `./development/conda/meta.yaml' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/MacOSX/postinstall.sh' -> `./development/MacOSX/postinstall.sh' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/MacOSX/INSTALL' -> `./development/MacOSX/INSTALL' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/MacOSX/variant_tools.pmdoc/01variant-contents.xml' -> `./development/MacOSX/variant_tools.pmdoc/01variant-contents.xml' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/MacOSX/variant_tools.pmdoc/index.xml' -> `./development/MacOSX/variant_tools.pmdoc/index.xml' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/MacOSX/variant_tools.pmdoc/01variant.xml' -> `./development/MacOSX/variant_tools.pmdoc/01variant.xml' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/docker/Dockerfile' -> `./development/docker/Dockerfile' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/Linux/install.sh' -> `./development/Linux/install.sh' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/Linux/extractor-template.sh' -> `./development/Linux/extractor-template.sh' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/development/docker_ci/Dockerfile' -> `./development/docker_ci/Dockerfile' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_func.py' -> `./test/test_func.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_associate.py' -> `./test/test_associate.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_remove.py' -> `./test/test_remove.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_import.py' -> `./test/test_import.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/testUtils.py' -> `./test/testUtils.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_show.py' -> `./test/test_show.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_exclude.py' -> `./test/test_exclude.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_execute.py' -> `./test/test_execute.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_admin.py' -> `./test/test_admin.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_output.py' -> `./test/test_output.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_phenotype.py' -> `./test/test_phenotype.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_use.py' -> `./test/test_use.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/run_tests.py' -> `./test/run_tests.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_compare.py' -> `./test/test_compare.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_pipeline.pipeline' -> `./test/test_pipeline.pipeline' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_liftover.py' -> `./test/test_liftover.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_update.py' -> `./test/test_update.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_export.py' -> `./test/test_export.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_pipeline.py' -> `./test/test_pipeline.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_avg_depth.py' -> `./test/test_avg_depth.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_select.py' -> `./test/test_select.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_init.py' -> `./test/test_init.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/test_trans_ratio.py' -> `./test/test_trans_ratio.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/temp_test_import_hdf5.py' -> `./test/temp_test_import_hdf5.py' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_mpi_multi_genotypes.txt' -> `./test/output/import_mpi_multi_genotypes.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_mpi_variant.txt' -> `./test/output/import_mpi_variant.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_multi_sample_samples.txt' -> `./test/output/import_multi_sample_samples.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_mpi_multi_samples.txt' -> `./test/output/import_mpi_multi_samples.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_multi_sample2_variant.txt' -> `./test/output/import_multi_sample2_variant.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/CGA_variant.txt' -> `./test/output/CGA_variant.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/remove_genofield_before_sqlite.txt' -> `./test/output/remove_genofield_before_sqlite.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/exclude_sift.txt' -> `./test/output/exclude_sift.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/phenotype_fields.txt' -> `./test/output/phenotype_fields.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_genotype_1.txt' -> `./test/output/import_genotype_1.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/genotype_variant_sample_output.txt' -> `./test/output/genotype_variant_sample_output.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_customized.txt' -> `./test/output/import_customized.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_mpi_genotypes.txt' -> `./test/output/import_mpi_genotypes.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_mpi_genotype.txt' -> `./test/output/import_mpi_genotype.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/exclude_anno1.txt' -> `./test/output/exclude_anno1.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_txt_1.txt' -> `./test/output/import_txt_1.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores2.txt' -> `./test/output/assores2.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_csv.txt' -> `./test/output/import_csv.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/use_field.txt' -> `./test/output/use_field.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/phenotype_import.txt' -> `./test/output/phenotype_import.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/evsVariantTest.txt' -> `./test/output/evsVariantTest.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/remove_genofield_after_sqlite.txt' -> `./test/output/remove_genofield_after_sqlite.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/remove_field_after.txt' -> `./test/output/remove_field_after.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores5.txt' -> `./test/output/assores5.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/vcf_assigned_sample_name_genotype.txt' -> `./test/output/vcf_assigned_sample_name_genotype.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/remove_genofield_after.txt' -> `./test/output/remove_genofield_after.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_multi_sample_variant.txt' -> `./test/output/import_multi_sample_variant.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores_wss4.txt' -> `./test/output/assores_wss4.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_vcf_alt.txt' -> `./test/output/import_vcf_alt.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_vcf_ref.txt' -> `./test/output/import_vcf_ref.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_genotype_2.txt' -> `./test/output/import_genotype_2.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/vcf_single_sampleName_genotype.txt' -> `./test/output/vcf_single_sampleName_genotype.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/exclude_anno.txt' -> `./test/output/exclude_anno.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores_wss3.txt' -> `./test/output/assores_wss3.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores_wss7.txt' -> `./test/output/assores_wss7.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/missing_gen.tped' -> `./test/output/missing_gen.tped' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/phenotype_phenotype_with_filename_field.txt' -> `./test/output/phenotype_phenotype_with_filename_field.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores1.txt' -> `./test/output/assores1.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_mpi_multi_genotype_hdf5.txt' -> `./test/output/import_mpi_multi_genotype_hdf5.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/remove_phenotype_output.txt' -> `./test/output/remove_phenotype_output.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/liftover_cmp.txt' -> `./test/output/liftover_cmp.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_mixed_build.txt' -> `./test/output/import_mixed_build.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assogrp3.txt' -> `./test/output/assogrp3.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_multi_sample2_samples_hdf5.txt' -> `./test/output/import_multi_sample2_samples_hdf5.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores6.txt' -> `./test/output/assores6.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores7.txt' -> `./test/output/assores7.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assogrp6.txt' -> `./test/output/assogrp6.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/update_sum_stat.txt' -> `./test/output/update_sum_stat.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores_wss1.txt' -> `./test/output/assores_wss1.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/use_position.txt' -> `./test/output/use_position.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/liftover.txt' -> `./test/output/liftover.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assogrp8.txt' -> `./test/output/assogrp8.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_cga.txt' -> `./test/output/import_cga.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assogrp2.txt' -> `./test/output/assogrp2.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores_wss8.txt' -> `./test/output/assores_wss8.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_multi_sample2_samples.txt' -> `./test/output/import_multi_sample2_samples.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/remove_genofield_before.txt' -> `./test/output/remove_genofield_before.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/vcf_multiple_sample_name.txt' -> `./test/output/vcf_multiple_sample_name.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/remove_phenotype_sqlite.txt' -> `./test/output/remove_phenotype_sqlite.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_multi_sample_samples_hdf5.txt' -> `./test/output/import_multi_sample_samples_hdf5.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/remove_phenotype.txt' -> `./test/output/remove_phenotype.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assogrp7.txt' -> `./test/output/assogrp7.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores3.txt' -> `./test/output/assores3.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_mpi_multi_variant.txt' -> `./test/output/import_mpi_multi_variant.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores8.txt' -> `./test/output/assores8.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/remove_field_before.txt' -> `./test/output/remove_field_before.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_mpi_samples.txt' -> `./test/output/import_mpi_samples.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores_wss2.txt' -> `./test/output/assores_wss2.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores_wss6.txt' -> `./test/output/assores_wss6.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/phenotype_phenotype_with_filename.txt' -> `./test/output/phenotype_phenotype_with_filename.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/remove_genofield_after_hdf5.txt' -> `./test/output/remove_genofield_after_hdf5.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/exclude_select_anno.txt' -> `./test/output/exclude_select_anno.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assogrp4.txt' -> `./test/output/assogrp4.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores_wss5.txt' -> `./test/output/assores_wss5.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assogrp5.txt' -> `./test/output/assogrp5.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assogrp1.txt' -> `./test/output/assogrp1.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_cga_phenotype.txt' -> `./test/output/import_cga_phenotype.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/assores4.txt' -> `./test/output/assores4.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/remove_genofield_before_hdf5.txt' -> `./test/output/remove_genofield_before_hdf5.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/vcf_multiple_samples_genotypes.txt' -> `./test/output/vcf_multiple_samples_genotypes.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/output/import_mpi_multi_genotype.txt' -> `./test/output/import_mpi_multi_genotype.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/phenotype/badphenotype1.txt' -> `./test/phenotype/badphenotype1.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/phenotype/badphenotype3.txt' -> `./test/phenotype/badphenotype3.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/phenotype/phenotype.txt' -> `./test/phenotype/phenotype.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/phenotype/badphenotype2.txt' -> `./test/phenotype/badphenotype2.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/phenotype/pheno_filename.txt' -> `./test/phenotype/pheno_filename.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/fmt/dbSNP_hg19validation.fmt' -> `./test/fmt/dbSNP_hg19validation.fmt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/fmt/multi_index.fmt' -> `./test/fmt/multi_index.fmt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/fmt/basic_hg18.fmt' -> `./test/fmt/basic_hg18.fmt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/fmt/new_format.fmt' -> `./test/fmt/new_format.fmt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/fmt/missing_gen.fmt' -> `./test/fmt/missing_gen.fmt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/fmt/genotypes.fmt' -> `./test/fmt/genotypes.fmt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/fmt/randcol.fmt' -> `./test/fmt/randcol.fmt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/ann/testNSFP.ann' -> `./test/ann/testNSFP.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/ann/testNSFP.zip' -> `./test/ann/testNSFP.zip' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/ann/testNSFP.DB.gz' -> `./test/ann/testNSFP.DB.gz' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/ann/testThousandGenomes.ann' -> `./test/ann/testThousandGenomes.ann' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/ann/testThousandGenomes.zip' -> `./test/ann/testThousandGenomes.zip' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/ann/testThousandGenomes.vcf.head' -> `./test/ann/testThousandGenomes.vcf.head' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/V3.vcf' -> `./test/vcf/V3.vcf' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/SAMP3_complex_variants.vcf' -> `./test/vcf/SAMP3_complex_variants.vcf' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/missing_gen.vcf' -> `./test/vcf/missing_gen.vcf' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/chromX.vcf.gz' -> `./test/vcf/chromX.vcf.gz' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/var_format.vcf' -> `./test/vcf/var_format.vcf' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/CEU.vcf.gz.tbi' -> `./test/vcf/CEU.vcf.gz.tbi' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/hdf5_test.vcf' -> `./test/vcf/hdf5_test.vcf' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/input.vcf' -> `./test/vcf/input.vcf' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/SAMP4_complex_variants.vcf' -> `./test/vcf/SAMP4_complex_variants.vcf' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/compare.vcf' -> `./test/vcf/compare.vcf' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/500SAMP.vcf' -> `./test/vcf/500SAMP.vcf' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/CEU.vcf.gz' -> `./test/vcf/CEU.vcf.gz' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/input_nogeno.vcf' -> `./test/vcf/input_nogeno.vcf' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/V1.vcf' -> `./test/vcf/V1.vcf' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/SAMP1.vcf' -> `./test/vcf/SAMP1.vcf' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/V2.vcf' -> `./test/vcf/V2.vcf' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/with_wildtype.vcf' -> `./test/vcf/with_wildtype.vcf' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/CEU_dup.vcf.gz' -> `./test/vcf/CEU_dup.vcf.gz' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/EMPTY.vcf' -> `./test/vcf/EMPTY.vcf' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/hdf5_test.h5' -> `./test/vcf/hdf5_test.h5' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/SAMP2.vcf' -> `./test/vcf/SAMP2.vcf' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/missing_gen_hdf5.vcf' -> `./test/vcf/missing_gen_hdf5.vcf' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/vcf/dup_geno.vcf' -> `./test/vcf/dup_geno.vcf' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/proj/assoproj.tar.gz' -> `./test/proj/assoproj.tar.gz' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/plink/dat1.fam' -> `./test/plink/dat1.fam' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/plink/dat1.bim' -> `./test/plink/dat1.bim' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/plink/dat1.bed' -> `./test/plink/dat1.bed' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/genotypes.txt' -> `./test/txt/genotypes.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/CGA.tsv.bz2' -> `./test/txt/CGA.tsv.bz2' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/CASAVA18_INDEL.txt' -> `./test/txt/CASAVA18_INDEL.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/sample_1_chr22.txt' -> `./test/txt/sample_1_chr22.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/ANNOVAR.txt' -> `./test/txt/ANNOVAR.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/CASAVA18_SNP.txt' -> `./test/txt/CASAVA18_SNP.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/dbSNP_hg19validation.txt' -> `./test/txt/dbSNP_hg19validation.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/assoc.dat' -> `./test/txt/assoc.dat' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/assoc.phen' -> `./test/txt/assoc.phen' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/variants.txt' -> `./test/txt/variants.txt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/pileup.indel' -> `./test/txt/pileup.indel' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/complteGenomics.tsv.bz2' -> `./test/txt/complteGenomics.tsv.bz2' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/test.csv' -> `./test/txt/test.csv' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/annovar.txt.exonic_variant_function' -> `./test/txt/annovar.txt.exonic_variant_function' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/assoc.fmt' -> `./test/txt/assoc.fmt' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/invalid.tsv' -> `./test/txt/invalid.tsv' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/input.tsv' -> `./test/txt/input.tsv' `/gnu/store/y88h4pr5sp0yi25hmxn4daqs7iyyczy5-variant-tools-3.1.2-checkout/test/txt/sample_chr22.txt' -> `./test/txt/sample_chr22.txt' phase `unpack' succeeded after 0.1 seconds starting phase `ensure-no-mtimes-pre-1980' phase `ensure-no-mtimes-pre-1980' succeeded after 0.0 seconds starting phase `enable-bytecode-determinism' phase `enable-bytecode-determinism' succeeded after 0.0 seconds starting phase `ensure-no-cythonized-files' phase `ensure-no-cythonized-files' succeeded after 0.0 seconds starting phase `patch-usr-bin-file' phase `patch-usr-bin-file' succeeded after 0.0 seconds starting phase `patch-source-shebangs' patch-shebang: ./development/Linux/extractor-template.sh: changing `/usr/bin/env bash' to 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./setup.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/rext/MetaSKAT.PFF.VAT.R: warning: no binary for interpreter `Rscript' found in $PATH patch-shebang: ./src/rext/MetaSKAT.VAT.R: warning: no binary for interpreter `Rscript' found in $PATH patch-shebang: ./src/variant_tools/__init__.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/variant_tools/_version.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/variant_tools/accessor.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/variant_tools/annotation.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/variant_tools/association.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/variant_tools/association_hdf5.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/variant_tools/compare.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/variant_tools/exporter.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/variant_tools/exporter_reader.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/variant_tools/geno_store.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/variant_tools/importer.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/variant_tools/liftOver.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/variant_tools/merge_sort_parallel.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/variant_tools/meta.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/variant_tools/phenotype.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/variant_tools/pipeline.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/variant_tools/plinkfile.py: warning: no binary for interpreter `' found in $PATH patch-shebang: ./src/variant_tools/plot.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/variant_tools/preprocessor.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/variant_tools/project.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/variant_tools/rtester.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/variant_tools/simulation.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/variant_tools/tester.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/variant_tools/text_reader.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/variant_tools/update.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/variant_tools/utils.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/variant_tools/variant.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/variant_tools/vtools.py: warning: no binary for interpreter `python2.7' found in $PATH patch-shebang: ./src/variant_tools/vtools_association_cluster.lsf: changing `/bin/bash' to `/gnu/store/4y5m9lb8k3qkb1y9m02sw9w9a6hacd16-bash-minimal-5.1.8/bin/bash' patch-shebang: ./src/variant_tools/vtools_association_cluster.pbs: changing `/bin/bash' to `/gnu/store/4y5m9lb8k3qkb1y9m02sw9w9a6hacd16-bash-minimal-5.1.8/bin/bash' patch-shebang: ./src/variant_tools/vtools_report.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./src/variant_tools/worker_zmq.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./test/run_tests.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./test/temp_test_import_hdf5.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./test/testUtils.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./test/test_admin.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./test/test_associate.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./test/test_avg_depth.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./test/test_compare.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./test/test_exclude.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./test/test_execute.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./test/test_export.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./test/test_func.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./test/test_import.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./test/test_init.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./test/test_liftover.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./test/test_output.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./test/test_phenotype.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./test/test_pipeline.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./test/test_remove.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./test/test_select.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./test/test_show.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./test/test_trans_ratio.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./test/test_update.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' patch-shebang: ./test/test_use.py: changing `/usr/bin/env python' to `/gnu/store/slsh0qjv5j68xda2bb6h8gsxwyi1j25a-python-wrapper-3.9.9/bin/python' phase `patch-source-shebangs' succeeded after 0.1 seconds starting phase `patch-generated-file-shebangs' patch-shebang: ./src/variant_tools/vtools.py: warning: no binary for interpreter `python2.7' found in $PATH phase `patch-generated-file-shebangs' succeeded after 0.0 seconds starting phase `build' running "python setup.py" with command "build" and parameters () /gnu/store/akfnv4b78fzwikdp4jld819vh389i8z2-python-cython-0.29.24/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/guix-build-variant-tools-3.1.2.drv-0/source/src/variant_tools/io_vcf_read.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling src/variant_tools/io_vcf_read.pyx because it changed. [1/1] Cythonizing src/variant_tools/io_vcf_read.pyx running build running build_py creating build creating build/lib.linux-x86_64-3.9 creating build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/cgatools.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/compare.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/checking_asso_result.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/liftOver.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/simulation.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/annotation.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/variant.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/vtools.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/exporter.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/vtools_report.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/merge_sort_parallel.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/plinkfile.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/pipeline.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/importer.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/site_options.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/ucsctools.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/__init__.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/meta.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/tester.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/text_reader.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/assoTests.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/plot.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/rtester.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/association_hdf5.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/utils.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/project.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/exporter_reader.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/worker_zmq.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/preprocessor.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/importer_allele_hdf5.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/accessor.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/vt_sqlite3.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/geno_store.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/update.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/phenotype.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/association.py -> build/lib.linux-x86_64-3.9/variant_tools copying src/variant_tools/_version.py -> build/lib.linux-x86_64-3.9/variant_tools warning: build_py: byte-compiling is disabled, skipping. running build_ext building 'variant_tools._vt_sqlite3' extension creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/src creating build/temp.linux-x86_64-3.9/src/sqlite creating build/temp.linux-x86_64-3.9/src/sqlite/py3 gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -DMODULE_NAME="vt_sqlite3" -DHAVE_USLEEP -Isrc/sqlite -Isrc/sqlite/py3 -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c src/sqlite/py3/cache.c -o build/temp.linux-x86_64-3.9/src/sqlite/py3/cache.o -w gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -DMODULE_NAME="vt_sqlite3" -DHAVE_USLEEP -Isrc/sqlite -Isrc/sqlite/py3 -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c src/sqlite/py3/connection.c -o build/temp.linux-x86_64-3.9/src/sqlite/py3/connection.o -w gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -DMODULE_NAME="vt_sqlite3" -DHAVE_USLEEP -Isrc/sqlite -Isrc/sqlite/py3 -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c src/sqlite/py3/cursor.c -o build/temp.linux-x86_64-3.9/src/sqlite/py3/cursor.o -w gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -DMODULE_NAME="vt_sqlite3" -DHAVE_USLEEP -Isrc/sqlite -Isrc/sqlite/py3 -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c src/sqlite/py3/microprotocols.c -o build/temp.linux-x86_64-3.9/src/sqlite/py3/microprotocols.o -w gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -DMODULE_NAME="vt_sqlite3" -DHAVE_USLEEP -Isrc/sqlite -Isrc/sqlite/py3 -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c src/sqlite/py3/module.c -o build/temp.linux-x86_64-3.9/src/sqlite/py3/module.o -w gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -DMODULE_NAME="vt_sqlite3" -DHAVE_USLEEP -Isrc/sqlite -Isrc/sqlite/py3 -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c src/sqlite/py3/prepare_protocol.c -o build/temp.linux-x86_64-3.9/src/sqlite/py3/prepare_protocol.o -w gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fno-semantic-interposition -fPIC -DMODULE_NAME="vt_sqlite3" -DHAVE_USLEEP -Isrc/sqlite -Isrc/sqlite/py3 -I/gnu/store/65i3nhcwmz0p8rqbg48gaavyky4g4hwk-python-3.9.9/include/python3.9 -c src/sqlite/py3/row.c -o build/temp.linux-x86_64-3.9/src/sqlite/py3/row.o -w src/sqlite/py3/row.c: In function ‘pysqlite_row_print’: src/sqlite/py3/row.c:161:27: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 161 | return (&PyTuple_Type)->tp_print(self->data, fp, flags); | ^~ error: command '/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/bin/gcc' failed with exit code 1 error: in phase 'build': uncaught exception: %exception #<&invoke-error program: "python" arguments: ("-c" "import setuptools, tokenize;__file__='setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))" "build") exit-status: 1 term-signal: #f stop-signal: #f> phase `build' failed after 14.0 seconds command "python" "-c" "import setuptools, tokenize;__file__='setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))" "build" failed with status 1