WARNING: (guile-user): imported module (guix build utils) overrides core binding `delete'
starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/55q02v1a3qz8n7rlhy3jva9qjkfwj8y0-gawk-5.1.0/bin:/gnu/store/25rwh1ix8plgn8frv61i4hykf8zcn6d7-python2-2.7.18/bin:/gnu/store/g2ajyl8xk9aarxrgjbng2hkj3qm2v0z2-tar-1.34/bin:/gnu/store/iixwcv3k49ks1rf34pjgfzmzyhhgwng3-gzip-1.10/bin:/gnu/store/s3hl12jxz9ybs7nsy7kq7ybzz7qnzmsg-bzip2-1.0.8/bin:/gnu/store/c8isj4jq6knv0icfgr43di6q3nvdzkx7-xz-5.2.5/bin:/gnu/store/4ic6244i3ca4b4rxc2wnrgllsidyishv-file-5.39/bin:/gnu/store/ahmmvw21p11ik80lg1f953y7fd8bqkjm-diffutils-3.8/bin:/gnu/store/z39hnrwds1dgcbpfgj8dnv2cngjb2xbl-patch-2.7.6/bin:/gnu/store/39rsx3nl4c31952jybbjb8d6idr5hx7r-findutils-4.8.0/bin:/gnu/store/690qz3fg334dpwn3pn6k59n4wc943p2b-gawk-5.1.0/bin:/gnu/store/wxgv6i8g0p24q5gcyzd0yr07s8kn9680-sed-4.8/bin:/gnu/store/xjwp2hsd9256icjjybfrmznppjicywf6-grep-3.6/bin:/gnu/store/d251rfgc9nm2clzffzhgiipdvfvzkvwi-coreutils-8.32/bin:/gnu/store/55cbpsi18mahg131nmiya6km5b4mscfa-make-4.3/bin:/gnu/store/4y5m9lb8k3qkb1y9m02sw9w9a6hacd16-bash-minimal-5.1.8/bin:/gnu/store/s2pg5k98fl2g2szg9dykxyd9zl3xihv9-ld-wrapper-0/bin:/gnu/store/rc781v4k0drhaqn90xfwwpspki5x0bvf-binutils-2.37/bin:/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/bin:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/bin:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/sbin'
environment variable `GUIX_PYTHONPATH' set to `/gnu/store/25rwh1ix8plgn8frv61i4hykf8zcn6d7-python2-2.7.18/lib/python2.7/site-packages'
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/55q02v1a3qz8n7rlhy3jva9qjkfwj8y0-gawk-5.1.0/include:/gnu/store/25rwh1ix8plgn8frv61i4hykf8zcn6d7-python2-2.7.18/include:/gnu/store/8qv5kb2fgm4c3bf70zcg9l6hkf3qzpw9-zlib-1.2.11/include:/gnu/store/s3hl12jxz9ybs7nsy7kq7ybzz7qnzmsg-bzip2-1.0.8/include:/gnu/store/c8isj4jq6knv0icfgr43di6q3nvdzkx7-xz-5.2.5/include:/gnu/store/4ic6244i3ca4b4rxc2wnrgllsidyishv-file-5.39/include:/gnu/store/690qz3fg334dpwn3pn6k59n4wc943p2b-gawk-5.1.0/include:/gnu/store/55cbpsi18mahg131nmiya6km5b4mscfa-make-4.3/include:/gnu/store/rc781v4k0drhaqn90xfwwpspki5x0bvf-binutils-2.37/include:/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/include:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/include:/gnu/store/6mjww4iz4xdan74d5bbjfh7il8rngfkk-linux-libre-headers-5.10.35/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/55q02v1a3qz8n7rlhy3jva9qjkfwj8y0-gawk-5.1.0/include:/gnu/store/25rwh1ix8plgn8frv61i4hykf8zcn6d7-python2-2.7.18/include:/gnu/store/8qv5kb2fgm4c3bf70zcg9l6hkf3qzpw9-zlib-1.2.11/include:/gnu/store/s3hl12jxz9ybs7nsy7kq7ybzz7qnzmsg-bzip2-1.0.8/include:/gnu/store/c8isj4jq6knv0icfgr43di6q3nvdzkx7-xz-5.2.5/include:/gnu/store/4ic6244i3ca4b4rxc2wnrgllsidyishv-file-5.39/include:/gnu/store/690qz3fg334dpwn3pn6k59n4wc943p2b-gawk-5.1.0/include:/gnu/store/55cbpsi18mahg131nmiya6km5b4mscfa-make-4.3/include:/gnu/store/rc781v4k0drhaqn90xfwwpspki5x0bvf-binutils-2.37/include:/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/include/c++:/gnu/store/069aq2v993kpc41yabp5b6vm4wb9jkhg-gcc-10.3.0/include:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/include:/gnu/store/6mjww4iz4xdan74d5bbjfh7il8rngfkk-linux-libre-headers-5.10.35/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/55q02v1a3qz8n7rlhy3jva9qjkfwj8y0-gawk-5.1.0/lib:/gnu/store/25rwh1ix8plgn8frv61i4hykf8zcn6d7-python2-2.7.18/lib:/gnu/store/8qv5kb2fgm4c3bf70zcg9l6hkf3qzpw9-zlib-1.2.11/lib:/gnu/store/s3hl12jxz9ybs7nsy7kq7ybzz7qnzmsg-bzip2-1.0.8/lib:/gnu/store/c8isj4jq6knv0icfgr43di6q3nvdzkx7-xz-5.2.5/lib:/gnu/store/4ic6244i3ca4b4rxc2wnrgllsidyishv-file-5.39/lib:/gnu/store/690qz3fg334dpwn3pn6k59n4wc943p2b-gawk-5.1.0/lib:/gnu/store/rc781v4k0drhaqn90xfwwpspki5x0bvf-binutils-2.37/lib:/gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/lib:/gnu/store/4jdghmc65q7i7ib89zmvq66l0ghf7jc4-glibc-2.33-static/lib:/gnu/store/fnr1z6xsan0437r0yg48d0y8k32kqxby-glibc-utf8-locales-2.33/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/fnr1z6xsan0437r0yg48d0y8k32kqxby-glibc-utf8-locales-2.33/lib/locale'
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'en_US.utf8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/.gitignore' -> `./.gitignore'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/LICENSE' -> `./LICENSE'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/Makefile' -> `./Makefile'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/README.md' -> `./README.md'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/test/README.md' -> `./test/README.md'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/test/__init__.py' -> `./test/__init__.py'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/test/make_synthetic_reads.py' -> `./test/make_synthetic_reads.py'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/test/test_bad_fastq.fastq' -> `./test/test_bad_fastq.fastq'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/test/test_error_messages.py' -> `./test/test_error_messages.py'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/test/test_reference.fasta' -> `./test/test_reference.fasta'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/test/test_reference_1.fastq.gz' -> `./test/test_reference_1.fastq.gz'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/test/test_reference_2.fastq.gz' -> `./test/test_reference_2.fastq.gz'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/test/test_sort.fasta' -> `./test/test_sort.fasta'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/test/test_sort.fastq' -> `./test/test_sort.fastq'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/test/test_sort.py' -> `./test/test_sort.py'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/test/test_sort.txt' -> `./test/test_sort.txt'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/test/test_split.fastq' -> `./test/test_split.fastq'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/test/test_split.py' -> `./test/test_split.py'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/test/test_split.txt' -> `./test/test_split.txt'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/test/test_trim.fastq' -> `./test/test_trim.fastq'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/test/test_trim.py' -> `./test/test_trim.py'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/test/test_trim.txt' -> `./test/test_trim.txt'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/src/args.h' -> `./src/args.h'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/src/arguments.cpp' -> `./src/arguments.cpp'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/src/arguments.h' -> `./src/arguments.h'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/src/bloom_filter.h' -> `./src/bloom_filter.h'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/src/kmers.cpp' -> `./src/kmers.cpp'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/src/kmers.h' -> `./src/kmers.h'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/src/kseq.h' -> `./src/kseq.h'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/src/main.cpp' -> `./src/main.cpp'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/src/misc.cpp' -> `./src/misc.cpp'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/src/misc.h' -> `./src/misc.h'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/src/read.cpp' -> `./src/read.cpp'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/src/read.h' -> `./src/read.h'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/scripts/README.md' -> `./scripts/README.md'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/scripts/histogram.py' -> `./scripts/histogram.py'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/scripts/read_info_histograms.sh' -> `./scripts/read_info_histograms.sh'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/misc/example_commands_0_unfiltered.png' -> `./misc/example_commands_0_unfiltered.png'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/misc/example_commands_1_without_reference.png' -> `./misc/example_commands_1_without_reference.png'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/misc/example_commands_2_with_reference.png' -> `./misc/example_commands_2_with_reference.png'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/misc/example_commands_3_trim_split.png' -> `./misc/example_commands_3_trim_split.png'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/misc/example_commands_4_length_priority.png' -> `./misc/example_commands_4_length_priority.png'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/misc/example_commands_5_quality_priority.png' -> `./misc/example_commands_5_quality_priority.png'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/misc/filtlong_logo.png' -> `./misc/filtlong_logo.png'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/misc/read_length_identity.py' -> `./misc/read_length_identity.py'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/misc/score_equation.png' -> `./misc/score_equation.png'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/misc/split_example_1.png' -> `./misc/split_example_1.png'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/misc/split_example_2.png' -> `./misc/split_example_2.png'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/misc/trim_example_1.png' -> `./misc/trim_example_1.png'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/misc/trim_example_2.png' -> `./misc/trim_example_2.png'
`/gnu/store/c8kqz7qmvcwf7b0iidjxd8r2gp13gaxn-filtlong-0.2.0-1.d1bb46d-checkout/misc/trim_split_example_real_read.png' -> `./misc/trim_split_example_real_read.png'
phase `unpack' succeeded after 0.0 seconds
starting phase `bootstrap'
no 'configure.ac' or anything like that, doing nothing
phase `bootstrap' succeeded after 0.0 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
patch-shebang: ./misc/read_length_identity.py: warning: no binary for interpreter `python3' found in $PATH
patch-shebang: ./scripts/histogram.py: changing `/usr/bin/env python' to `/gnu/store/25rwh1ix8plgn8frv61i4hykf8zcn6d7-python2-2.7.18/bin/python'
patch-shebang: ./scripts/read_info_histograms.sh: changing `/usr/bin/env bash' to `/gnu/store/4y5m9lb8k3qkb1y9m02sw9w9a6hacd16-bash-minimal-5.1.8/bin/bash'
phase `patch-source-shebangs' succeeded after 0.0 seconds
starting phase `patch-generated-file-shebangs'
patch-makefile-SHELL: ./Makefile: changing `SHELL' from `/bin/sh' to `/gnu/store/4y5m9lb8k3qkb1y9m02sw9w9a6hacd16-bash-minimal-5.1.8/bin/sh'
phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `build'
g++ -std=c++11 -O3 -Wall -Wextra -pedantic -mtune=native -c -o src/arguments.o src/arguments.cpp
g++ -std=c++11 -O3 -Wall -Wextra -pedantic -mtune=native -c -o src/kmers.o src/kmers.cpp
g++ -std=c++11 -O3 -Wall -Wextra -pedantic -mtune=native -c -o src/main.o src/main.cpp
g++ -std=c++11 -O3 -Wall -Wextra -pedantic -mtune=native -c -o src/misc.o src/misc.cpp
g++ -std=c++11 -O3 -Wall -Wextra -pedantic -mtune=native -c -o src/read.o src/read.cpp
src/arguments.cpp: In constructor ‘Arguments::Arguments(int, char**)’:
src/arguments.cpp:152:18: warning: catching polymorphic type ‘class args::Help’ by value [-Wcatch-value=]
  152 |     catch (args::Help) {
      |                  ^~~~
src/arguments.cpp:157:29: warning: catching polymorphic type ‘class args::ParseError’ by value [-Wcatch-value=]
  157 |     catch (args::ParseError e) {
      |                             ^
src/arguments.cpp:162:34: warning: catching polymorphic type ‘class args::ValidationError’ by value [-Wcatch-value=]
  162 |     catch (args::ValidationError e) {
      |                                  ^
g++ -std=c++11 -O3 -Wall -Wextra -pedantic -mtune=native -o bin/filtlong src/arguments.o src/kmers.o src/main.o src/misc.o src/read.o -lz
phase `build' succeeded after 7.1 seconds
starting phase `patch-tests'
phase `patch-tests' succeeded after 0.0 seconds
starting phase `check'
test suite not run
phase `check' succeeded after 0.0 seconds
starting phase `install'
phase `install' succeeded after 0.0 seconds
starting phase `wrap-program'
phase `wrap-program' succeeded after 0.0 seconds
starting phase `patch-shebangs'
phase `patch-shebangs' succeeded after 0.0 seconds
starting phase `strip'
stripping binaries in "/gnu/store/fmlfy1sx62h94ank6x1q246a7ssfdyya-filtlong-0.2.0-1.d1bb46d/bin" with "strip" and flags ("--strip-unneeded" "--enable-deterministic-archives")
phase `strip' succeeded after 0.0 seconds
starting phase `validate-runpath'
validating RUNPATH of 1 binaries in "/gnu/store/fmlfy1sx62h94ank6x1q246a7ssfdyya-filtlong-0.2.0-1.d1bb46d/bin"...
phase `validate-runpath' succeeded after 0.0 seconds
starting phase `validate-documentation-location'
phase `validate-documentation-location' succeeded after 0.0 seconds
starting phase `delete-info-dir-file'
phase `delete-info-dir-file' succeeded after 0.0 seconds
starting phase `patch-dot-desktop-files'
phase `patch-dot-desktop-files' succeeded after 0.0 seconds
starting phase `make-dynamic-linker-cache'
created '/gnu/store/fmlfy1sx62h94ank6x1q246a7ssfdyya-filtlong-0.2.0-1.d1bb46d/etc/ld.so.cache' from 3 library search path entries
phase `make-dynamic-linker-cache' succeeded after 0.0 seconds
starting phase `install-license-files'
installing 1 license files from '.'
phase `install-license-files' succeeded after 0.0 seconds
starting phase `reset-gzip-timestamps'
phase `reset-gzip-timestamps' succeeded after 0.0 seconds
starting phase `compress-documentation'
phase `compress-documentation' succeeded after 0.0 seconds