starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/ild13b0r1cfalbd766q1633bgjgm623i-r-minimal-4.1.2/bin:/gnu/store/ikc2qn1h260f8mdhjz2cwndv2i7n753z-tar-1.34/bin:/gnu/store/v5l2251ck0r4n3w2rjw3l5dzyqsb9zj1-gzip-1.10/bin:/gnu/store/w6zv2mz56wyxr471q38a3cmzm4iqimy8-bzip2-1.0.8/bin:/gnu/store/72kpdqplq4nc87fm7ch47kxy3nlkzsyx-xz-5.2.5/bin:/gnu/store/jazwfsj2v41yih2yzw5nydqgdz1hgfm4-file-5.39/bin:/gnu/store/s49sxmz9g4xmzz222cay9k04ziy3qgmj-diffutils-3.8/bin:/gnu/store/m96snvbl92ivkd32giqh5f3d21bc2n5x-patch-2.7.6/bin:/gnu/store/l8l2y2dlya5rs9hfypmcb4saay7iwn0q-findutils-4.8.0/bin:/gnu/store/v45pjc1yqmy59j9ff913p3ywn9qk4lqx-gawk-5.1.0/bin:/gnu/store/7cddr79rydhc1m4hxr921mq17pz1jj3z-sed-4.8/bin:/gnu/store/ldkm5jwql0qsrfh3ax6rljjsrk0jzv7z-grep-3.6/bin:/gnu/store/25gv43v5rm05i26z39ajrd6nsxa5r461-coreutils-8.32/bin:/gnu/store/l8kxrs01lll3pzjrd590p45l8k045q6q-make-4.3/bin:/gnu/store/vx6vfbmmazvfi7vp8xyjn2mcyylvw9gn-bash-minimal-5.1.8/bin:/gnu/store/k452f0r5bk6n0cbsf5ndxbp5qcf6bpfw-ld-wrapper-0/bin:/gnu/store/6mqcv52gwn2dnbislgv9k99525mzmrrs-binutils-2.37/bin:/gnu/store/vakvgvrb839igv16jkif4lmx11d25jqb-gcc-10.3.0/bin:/gnu/store/2fk1gz2s7ppdicynscra9b19byrrr866-glibc-2.33/bin:/gnu/store/2fk1gz2s7ppdicynscra9b19byrrr866-glibc-2.33/sbin'
environment variable `R_LIBS_SITE' set to `/gnu/store/nyi4sg8wjp1dnkbd4rkwrniy9qsvhjmp-r-knitr-1.37/site-library/:/gnu/store/drxhpk02mipa2c32hsyabzjhvbg9dhsl-r-biocgenerics-0.40.0/site-library/:/gnu/store/3nq8hfik9mmlwc4j4hwil6awbjz348x7-r-genomeinfodbdata-1.2.0/site-library/:/gnu/store/p6z338ra1p1wn980rr5gdda9b8qxxyi1-r-iranges-2.28.0/site-library/:/gnu/store/cy8ff46y25km96d5gcsr26gmgaiga4ps-r-rcurl-1.95-0.1.2/site-library/:/gnu/store/g91jilkd37bw87y81cqhad8v6hyzcllr-r-s4vectors-0.32.3/site-library/:/gnu/store/br7ymkw0hzzl4wxn359lyk7vs725sa1l-r-yaml-2.2.1/site-library/:/gnu/store/id6h6vy21g352vvpjxxwb6shhv608v65-r-xfun-0.29/site-library/:/gnu/store/rzd93jwfly18gx5d2wjq1v7i73n8l3vx-r-stringr-1.4.0/site-library/:/gnu/store/fln059izvpw4dp3dsf2ayw6jlbwm597h-r-highr-0.9/site-library/:/gnu/store/f4ym055flbga1l1k7bwz0mm5iamz7qlp-r-evaluate-0.14/site-library/:/gnu/store/srx83l9sis96gvals5096wshbgnp3a04-r-bitops-1.0-7/site-library/:/gnu/store/51z58ah8f0dhynfjz1qfq1xb6bxdl1x2-r-stringi-1.7.6/site-library/:/gnu/store/zi5v9whyxnbh31jd58v3hplhy8md5lzi-r-magrittr-2.0.1/site-library/:/gnu/store/cn8a4vnzrjflcfskasb6ma2vl2l3wlln-r-glue-1.6.0/site-library/'
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/w6zv2mz56wyxr471q38a3cmzm4iqimy8-bzip2-1.0.8/include:/gnu/store/72kpdqplq4nc87fm7ch47kxy3nlkzsyx-xz-5.2.5/include:/gnu/store/jazwfsj2v41yih2yzw5nydqgdz1hgfm4-file-5.39/include:/gnu/store/v45pjc1yqmy59j9ff913p3ywn9qk4lqx-gawk-5.1.0/include:/gnu/store/l8kxrs01lll3pzjrd590p45l8k045q6q-make-4.3/include:/gnu/store/6mqcv52gwn2dnbislgv9k99525mzmrrs-binutils-2.37/include:/gnu/store/vakvgvrb839igv16jkif4lmx11d25jqb-gcc-10.3.0/include:/gnu/store/2fk1gz2s7ppdicynscra9b19byrrr866-glibc-2.33/include:/gnu/store/99a2njzz22dkzd8pz75fsi5nbgv9ww0x-linux-libre-headers-5.10.35/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/w6zv2mz56wyxr471q38a3cmzm4iqimy8-bzip2-1.0.8/include:/gnu/store/72kpdqplq4nc87fm7ch47kxy3nlkzsyx-xz-5.2.5/include:/gnu/store/jazwfsj2v41yih2yzw5nydqgdz1hgfm4-file-5.39/include:/gnu/store/v45pjc1yqmy59j9ff913p3ywn9qk4lqx-gawk-5.1.0/include:/gnu/store/l8kxrs01lll3pzjrd590p45l8k045q6q-make-4.3/include:/gnu/store/6mqcv52gwn2dnbislgv9k99525mzmrrs-binutils-2.37/include:/gnu/store/vakvgvrb839igv16jkif4lmx11d25jqb-gcc-10.3.0/include/c++:/gnu/store/vakvgvrb839igv16jkif4lmx11d25jqb-gcc-10.3.0/include:/gnu/store/2fk1gz2s7ppdicynscra9b19byrrr866-glibc-2.33/include:/gnu/store/99a2njzz22dkzd8pz75fsi5nbgv9ww0x-linux-libre-headers-5.10.35/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/ild13b0r1cfalbd766q1633bgjgm623i-r-minimal-4.1.2/lib:/gnu/store/w6zv2mz56wyxr471q38a3cmzm4iqimy8-bzip2-1.0.8/lib:/gnu/store/72kpdqplq4nc87fm7ch47kxy3nlkzsyx-xz-5.2.5/lib:/gnu/store/jazwfsj2v41yih2yzw5nydqgdz1hgfm4-file-5.39/lib:/gnu/store/v45pjc1yqmy59j9ff913p3ywn9qk4lqx-gawk-5.1.0/lib:/gnu/store/6mqcv52gwn2dnbislgv9k99525mzmrrs-binutils-2.37/lib:/gnu/store/2fk1gz2s7ppdicynscra9b19byrrr866-glibc-2.33/lib:/gnu/store/3ywv7s8d38rgcq7ljmc1s084358a2m3h-glibc-2.33-static/lib:/gnu/store/0brdikxqk59hdr47qabcm3sya001d8vf-glibc-utf8-locales-2.33/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/0brdikxqk59hdr47qabcm3sya001d8vf-glibc-utf8-locales-2.33/lib/locale'
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'en_US.utf8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
GenomeInfoDb/DESCRIPTION
GenomeInfoDb/NAMESPACE
GenomeInfoDb/NEWS
GenomeInfoDb/R/
GenomeInfoDb/R/Ensembl-utils.R
GenomeInfoDb/R/GenomeDescription-class.R
GenomeInfoDb/R/NCBI-utils.R
GenomeInfoDb/R/Seqinfo-class.R
GenomeInfoDb/R/UCSC-utils.R
GenomeInfoDb/R/fetchExtendedChromInfoFromUCSC.R
GenomeInfoDb/R/getChromInfoFromEnsembl.R
GenomeInfoDb/R/getChromInfoFromNCBI.R
GenomeInfoDb/R/getChromInfoFromUCSC.R
GenomeInfoDb/R/loadTaxonomyDb.R
GenomeInfoDb/R/mapGenomeBuilds.R
GenomeInfoDb/R/rankSeqlevels.R
GenomeInfoDb/R/seqinfo.R
GenomeInfoDb/R/seqlevels-wrappers.R
GenomeInfoDb/R/seqlevelsStyle.R
GenomeInfoDb/R/utils.R
GenomeInfoDb/R/zzz.R
GenomeInfoDb/README.md
GenomeInfoDb/build/
GenomeInfoDb/build/vignette.rds
GenomeInfoDb/inst/
GenomeInfoDb/inst/doc/
GenomeInfoDb/inst/doc/Accept-organism-for-GenomeInfoDb.R
GenomeInfoDb/inst/doc/Accept-organism-for-GenomeInfoDb.Rnw
GenomeInfoDb/inst/doc/Accept-organism-for-GenomeInfoDb.pdf
GenomeInfoDb/inst/doc/GenomeInfoDb.R
GenomeInfoDb/inst/doc/GenomeInfoDb.Rnw
GenomeInfoDb/inst/doc/GenomeInfoDb.pdf
GenomeInfoDb/inst/extdata/
GenomeInfoDb/inst/extdata/assembly_accessions.rda
GenomeInfoDb/inst/extdata/dataFiles/
GenomeInfoDb/inst/extdata/dataFiles/Arabidopsis_thaliana.txt
GenomeInfoDb/inst/extdata/dataFiles/Caenorhabditis_elegans.txt
GenomeInfoDb/inst/extdata/dataFiles/Canis_familiaris.txt
GenomeInfoDb/inst/extdata/dataFiles/Cyanidioschyzon_merolae.txt
GenomeInfoDb/inst/extdata/dataFiles/Drosophila_melanogaster.txt
GenomeInfoDb/inst/extdata/dataFiles/Homo_sapiens.txt
GenomeInfoDb/inst/extdata/dataFiles/Mus_musculus.txt
GenomeInfoDb/inst/extdata/dataFiles/Oryza_sativa.txt
GenomeInfoDb/inst/extdata/dataFiles/Populus_trichocarpa.txt
GenomeInfoDb/inst/extdata/dataFiles/README
GenomeInfoDb/inst/extdata/dataFiles/Rattus_norvegicus.txt
GenomeInfoDb/inst/extdata/dataFiles/Saccharomyces_cerevisiae.txt
GenomeInfoDb/inst/extdata/dataFiles/Zea_mays.txt
GenomeInfoDb/inst/extdata/dataFiles/genomeMappingTbl.csv
GenomeInfoDb/inst/registered/
GenomeInfoDb/inst/registered/NCBI_assemblies/
GenomeInfoDb/inst/registered/NCBI_assemblies/Apis_mellifera.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Arabidopsis_thaliana.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Betacoronavirus.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Bos_taurus.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Brassica_napus.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Caenorhabditis_elegans.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Callithrix_jacchus.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Camponotus_floridanus.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Canis_lupus_familiaris.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Chlamydomonas_reinhardtii.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Danio_rerio.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Drosophila_melanogaster.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Drosophila_virilis.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Fundulus_heteroclitus.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Galleria_mellonella.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Gallus_gallus.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Gasterosteus_aculeatus.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Harpegnathos_saltator.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Homo_sapiens.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Hordeum_vulgare.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Macaca_fascicularis.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Macaca_mulatta.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Madurella_mycetomatis.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Microtus_ochrogaster.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Monodelphis_domestica.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Mus_musculus.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Mustela_putorius_furo.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Pan_paniscus.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Pan_troglodytes.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Patiria_miniata.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Rattus_norvegicus.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Saccharomyces_cerevisiae.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Sus_scrofa.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Taeniopygia_guttata.R
GenomeInfoDb/inst/registered/NCBI_assemblies/Vitis_vinifera.R
GenomeInfoDb/inst/registered/UCSC_genomes/
GenomeInfoDb/inst/registered/UCSC_genomes/README.TXT
GenomeInfoDb/inst/registered/UCSC_genomes/apiMel1.R
GenomeInfoDb/inst/registered/UCSC_genomes/apiMel2.R
GenomeInfoDb/inst/registered/UCSC_genomes/bosTau1.R
GenomeInfoDb/inst/registered/UCSC_genomes/bosTau2.R
GenomeInfoDb/inst/registered/UCSC_genomes/bosTau3.R
GenomeInfoDb/inst/registered/UCSC_genomes/bosTau4.R
GenomeInfoDb/inst/registered/UCSC_genomes/bosTau6.R
GenomeInfoDb/inst/registered/UCSC_genomes/bosTau7.R
GenomeInfoDb/inst/registered/UCSC_genomes/bosTau8.R
GenomeInfoDb/inst/registered/UCSC_genomes/bosTau9.R
GenomeInfoDb/inst/registered/UCSC_genomes/calJac3.R
GenomeInfoDb/inst/registered/UCSC_genomes/calJac4.R
GenomeInfoDb/inst/registered/UCSC_genomes/canFam1.R
GenomeInfoDb/inst/registered/UCSC_genomes/canFam2.R
GenomeInfoDb/inst/registered/UCSC_genomes/canFam3.R
GenomeInfoDb/inst/registered/UCSC_genomes/canFam4.R
GenomeInfoDb/inst/registered/UCSC_genomes/canFam5.R
GenomeInfoDb/inst/registered/UCSC_genomes/ce10.R
GenomeInfoDb/inst/registered/UCSC_genomes/ce11.R
GenomeInfoDb/inst/registered/UCSC_genomes/ce2.R
GenomeInfoDb/inst/registered/UCSC_genomes/ce4.R
GenomeInfoDb/inst/registered/UCSC_genomes/ce6.R
GenomeInfoDb/inst/registered/UCSC_genomes/danRer10.R
GenomeInfoDb/inst/registered/UCSC_genomes/danRer11.R
GenomeInfoDb/inst/registered/UCSC_genomes/danRer5.R
GenomeInfoDb/inst/registered/UCSC_genomes/danRer6.R
GenomeInfoDb/inst/registered/UCSC_genomes/danRer7.R
GenomeInfoDb/inst/registered/UCSC_genomes/dm1.R
GenomeInfoDb/inst/registered/UCSC_genomes/dm2.R
GenomeInfoDb/inst/registered/UCSC_genomes/dm3.R
GenomeInfoDb/inst/registered/UCSC_genomes/dm6.R
GenomeInfoDb/inst/registered/UCSC_genomes/eboVir3.R
GenomeInfoDb/inst/registered/UCSC_genomes/galGal2.R
GenomeInfoDb/inst/registered/UCSC_genomes/galGal3.R
GenomeInfoDb/inst/registered/UCSC_genomes/galGal4.R
GenomeInfoDb/inst/registered/UCSC_genomes/galGal5.R
GenomeInfoDb/inst/registered/UCSC_genomes/galGal6.R
GenomeInfoDb/inst/registered/UCSC_genomes/gasAcu1.R
GenomeInfoDb/inst/registered/UCSC_genomes/hg15.R
GenomeInfoDb/inst/registered/UCSC_genomes/hg16.R
GenomeInfoDb/inst/registered/UCSC_genomes/hg17.R
GenomeInfoDb/inst/registered/UCSC_genomes/hg18.R
GenomeInfoDb/inst/registered/UCSC_genomes/hg19.R
GenomeInfoDb/inst/registered/UCSC_genomes/hg38.R
GenomeInfoDb/inst/registered/UCSC_genomes/macFas5.R
GenomeInfoDb/inst/registered/UCSC_genomes/mm10.R
GenomeInfoDb/inst/registered/UCSC_genomes/mm39.R
GenomeInfoDb/inst/registered/UCSC_genomes/mm8.R
GenomeInfoDb/inst/registered/UCSC_genomes/mm9.R
GenomeInfoDb/inst/registered/UCSC_genomes/monDom5.R
GenomeInfoDb/inst/registered/UCSC_genomes/musFur1.R
GenomeInfoDb/inst/registered/UCSC_genomes/panPan1.R
GenomeInfoDb/inst/registered/UCSC_genomes/panPan2.R
GenomeInfoDb/inst/registered/UCSC_genomes/panPan3.R
GenomeInfoDb/inst/registered/UCSC_genomes/panTro1.R
GenomeInfoDb/inst/registered/UCSC_genomes/panTro2.R
GenomeInfoDb/inst/registered/UCSC_genomes/panTro3.R
GenomeInfoDb/inst/registered/UCSC_genomes/panTro4.R
GenomeInfoDb/inst/registered/UCSC_genomes/panTro5.R
GenomeInfoDb/inst/registered/UCSC_genomes/panTro6.R
GenomeInfoDb/inst/registered/UCSC_genomes/rheMac10.R
GenomeInfoDb/inst/registered/UCSC_genomes/rheMac2.R
GenomeInfoDb/inst/registered/UCSC_genomes/rheMac3.R
GenomeInfoDb/inst/registered/UCSC_genomes/rheMac8.R
GenomeInfoDb/inst/registered/UCSC_genomes/rn1.R
GenomeInfoDb/inst/registered/UCSC_genomes/rn2.R
GenomeInfoDb/inst/registered/UCSC_genomes/rn3.R
GenomeInfoDb/inst/registered/UCSC_genomes/rn4.R
GenomeInfoDb/inst/registered/UCSC_genomes/rn5.R
GenomeInfoDb/inst/registered/UCSC_genomes/rn6.R
GenomeInfoDb/inst/registered/UCSC_genomes/rn7.R
GenomeInfoDb/inst/registered/UCSC_genomes/sacCer1.R
GenomeInfoDb/inst/registered/UCSC_genomes/sacCer2.R
GenomeInfoDb/inst/registered/UCSC_genomes/sacCer3.R
GenomeInfoDb/inst/registered/UCSC_genomes/susScr11.R
GenomeInfoDb/inst/registered/UCSC_genomes/susScr2.R
GenomeInfoDb/inst/registered/UCSC_genomes/susScr3.R
GenomeInfoDb/inst/registered/UCSC_genomes/taeGut1.R
GenomeInfoDb/inst/registered/UCSC_genomes/taeGut2.R
GenomeInfoDb/inst/registered/UCSC_genomes/wuhCor1.R
GenomeInfoDb/inst/unitTests/
GenomeInfoDb/inst/unitTests/test_Seqinfo-class.R
GenomeInfoDb/inst/unitTests/test_mapGenomeBuilds.R
GenomeInfoDb/inst/unitTests/test_rankSeqlevels.R
GenomeInfoDb/inst/unitTests/test_seqlevels-wrappers.R
GenomeInfoDb/inst/unitTests/test_seqlevelsStyle.R
GenomeInfoDb/inst/unitTests/test_utils.R
GenomeInfoDb/man/
GenomeInfoDb/man/GenomeDescription-class.Rd
GenomeInfoDb/man/GenomeInfoDb-internals.Rd
GenomeInfoDb/man/Seqinfo-class.Rd
GenomeInfoDb/man/fetchExtendedChromInfoFromUCSC.Rd
GenomeInfoDb/man/getChromInfoFromEnsembl.Rd
GenomeInfoDb/man/getChromInfoFromNCBI.Rd
GenomeInfoDb/man/getChromInfoFromUCSC.Rd
GenomeInfoDb/man/loadTaxonomyDb.Rd
GenomeInfoDb/man/mapGenomeBuilds.Rd
GenomeInfoDb/man/rankSeqlevels.Rd
GenomeInfoDb/man/seqinfo.Rd
GenomeInfoDb/man/seqlevels-wrappers.Rd
GenomeInfoDb/man/seqlevelsStyle.Rd
GenomeInfoDb/tests/
GenomeInfoDb/tests/run_unitTests.R
GenomeInfoDb/vignettes/
GenomeInfoDb/vignettes/Accept-organism-for-GenomeInfoDb.Rnw
GenomeInfoDb/vignettes/GenomeInfoDb.Rnw
phase `unpack' succeeded after 0.0 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
phase `patch-source-shebangs' succeeded after 0.0 seconds
starting phase `patch-generated-file-shebangs'
phase `patch-generated-file-shebangs' succeeded after 0.0 seconds
starting phase `install'
* installing *source* package ‘GenomeInfoDb’ ...
** using staged installation
** R
** inst
** tests
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GenomeInfoDb)
phase `install' succeeded after 9.5 seconds
starting phase `check'
Testing examples for package ‘GenomeInfoDb’
phase `check' succeeded after 2.2 seconds
starting phase `patch-shebangs'
phase `patch-shebangs' succeeded after 0.0 seconds
starting phase `strip'
phase `strip' succeeded after 0.0 seconds
starting phase `validate-runpath'
phase `validate-runpath' succeeded after 0.0 seconds
starting phase `validate-documentation-location'
phase `validate-documentation-location' succeeded after 0.0 seconds
starting phase `delete-info-dir-file'
phase `delete-info-dir-file' succeeded after 0.0 seconds
starting phase `patch-dot-desktop-files'
phase `patch-dot-desktop-files' succeeded after 0.0 seconds
starting phase `make-dynamic-linker-cache'
phase `make-dynamic-linker-cache' succeeded after 0.0 seconds
starting phase `install-license-files'
installing 0 license files from '.'
phase `install-license-files' succeeded after 0.0 seconds
starting phase `reset-gzip-timestamps'
phase `reset-gzip-timestamps' succeeded after 0.0 seconds
starting phase `compress-documentation'
phase `compress-documentation' succeeded after 0.0 seconds