starting phase `separate-from-pid1'
build process now running as PID 10
phase `separate-from-pid1' succeeded after 0.0 seconds
starting phase `set-SOURCE-DATE-EPOCH'
phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds
starting phase `set-paths'
environment variable `PATH' set to `/gnu/store/fwwa3gpk42r773gd492wfaz3smp3048m-autoconf-2.69/bin:/gnu/store/6fpkzhw6q09hqaiagnjg63fda2pn7sgq-automake-1.16.5/bin:/gnu/store/q80jcah63m4d5d018jr0d1nhash7r7jq-which-2.21/bin:/gnu/store/87q3p0k9kary1vzpci4pmg99scm6zvwk-gcc-cross-arm-linux-gnueabihf-14.2.0/bin:/gnu/store/crpic36n5wpk7vxyxw1idm99af9f20g7-binutils-cross-arm-linux-gnueabihf-2.41/bin:/gnu/store/j5zgzgsmbjgywr67r86h1n6s4qiabv5q-tar-1.34/bin:/gnu/store/0r2fx1lr1h2i3cl1x5fw4s4ly95qspya-gzip-1.13/bin:/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/bin:/gnu/store/544ga5n6nq8y2961ihigra6n6a0r99nn-file-5.45/bin:/gnu/store/swmflx2bmqpf0drm167pxfpgyr7ckcam-diffutils-3.10/bin:/gnu/store/4jhlsg65s1zx90gnnfmaax52i8prnl45-patch-2.7.6/bin:/gnu/store/b5c62i99dsfa5j0j3f8g2j1xdi6fih22-findutils-4.9.0/bin:/gnu/store/vrl2r0ps24k1a6yap2chjylv5rhbndvr-gawk-5.3.0/bin:/gnu/store/3f0fjq25n2kwcmi0zyrf216wa6g8xpjw-zstd-1.5.2/bin:/gnu/store/3i4fr8riqw9azh1p4mqggl5vdz23kyr8-sed-4.8/bin:/gnu/store/7k8b93779dqpwcg2qjdvnf4nl43jv7hf-grep-3.11/bin:/gnu/store/fbaw0sb21gv02qq7gs9wg5y5wlpdgzih-xz-5.4.5/bin:/gnu/store/7h0mnlwalw23j9jmvz5n1i5mqkgb4d06-coreutils-9.1/bin:/gnu/store/lc6r1mh0jlcwixjziiw1zsx1my478rv1-make-4.4.1/bin:/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin:/gnu/store/3k6lyifyg024lk3gncsgf2gzjzvc70gv-ld-wrapper-0/bin:/gnu/store/ylgkrq9j1gyfig2y66srmgsbyh9w20d9-binutils-2.41/bin:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/bin:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/bin:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/sbin'
environment variable `CROSS_LIBRARY_PATH' set to `/gnu/store/iqf68qlpsn4agrrx095fbn5mw6k8zhl4-htslib-1.19/lib:/gnu/store/xcwqplswjbmvb113hbns7ysr4kp1jg87-zlib-1.3/lib:/gnu/store/1qc1hd6afsqh05prnrx429cghafdjig8-htscodecs-1.6.0/lib:/gnu/store/y73ipcgkq1k9b0dsibzi25fgfkvhc6al-python-3.10.7/lib:/gnu/store/kdk5c2va0v32x9xbsziwpdlh29x63vb7-glibc-cross-arm-linux-gnueabihf-2.39/lib:/gnu/store/a6blq1zlgipcbangszn7p7s3nbhph5c8-glibc-cross-arm-linux-gnueabihf-2.39-static/lib'
environment variable `CROSS_C_INCLUDE_PATH' set to `/gnu/store/iqf68qlpsn4agrrx095fbn5mw6k8zhl4-htslib-1.19/include:/gnu/store/xcwqplswjbmvb113hbns7ysr4kp1jg87-zlib-1.3/include:/gnu/store/1qc1hd6afsqh05prnrx429cghafdjig8-htscodecs-1.6.0/include:/gnu/store/y73ipcgkq1k9b0dsibzi25fgfkvhc6al-python-3.10.7/include:/gnu/store/87q3p0k9kary1vzpci4pmg99scm6zvwk-gcc-cross-arm-linux-gnueabihf-14.2.0/include:/gnu/store/kdk5c2va0v32x9xbsziwpdlh29x63vb7-glibc-cross-arm-linux-gnueabihf-2.39/include:/gnu/store/q97gxljfvsmmd29w6i2caw8033hi42li-linux-libre-headers-cross-arm-linux-gnueabihf-5.15.49/include'
environment variable `CROSS_CPLUS_INCLUDE_PATH' set to `/gnu/store/iqf68qlpsn4agrrx095fbn5mw6k8zhl4-htslib-1.19/include:/gnu/store/xcwqplswjbmvb113hbns7ysr4kp1jg87-zlib-1.3/include:/gnu/store/1qc1hd6afsqh05prnrx429cghafdjig8-htscodecs-1.6.0/include:/gnu/store/y73ipcgkq1k9b0dsibzi25fgfkvhc6al-python-3.10.7/include:/gnu/store/87q3p0k9kary1vzpci4pmg99scm6zvwk-gcc-cross-arm-linux-gnueabihf-14.2.0/include/c++:/gnu/store/87q3p0k9kary1vzpci4pmg99scm6zvwk-gcc-cross-arm-linux-gnueabihf-14.2.0/include:/gnu/store/kdk5c2va0v32x9xbsziwpdlh29x63vb7-glibc-cross-arm-linux-gnueabihf-2.39/include:/gnu/store/q97gxljfvsmmd29w6i2caw8033hi42li-linux-libre-headers-cross-arm-linux-gnueabihf-5.15.49/include'
environment variable `CROSS_OBJC_INCLUDE_PATH' set to `/gnu/store/iqf68qlpsn4agrrx095fbn5mw6k8zhl4-htslib-1.19/include:/gnu/store/xcwqplswjbmvb113hbns7ysr4kp1jg87-zlib-1.3/include:/gnu/store/1qc1hd6afsqh05prnrx429cghafdjig8-htscodecs-1.6.0/include:/gnu/store/y73ipcgkq1k9b0dsibzi25fgfkvhc6al-python-3.10.7/include:/gnu/store/87q3p0k9kary1vzpci4pmg99scm6zvwk-gcc-cross-arm-linux-gnueabihf-14.2.0/include:/gnu/store/kdk5c2va0v32x9xbsziwpdlh29x63vb7-glibc-cross-arm-linux-gnueabihf-2.39/include:/gnu/store/q97gxljfvsmmd29w6i2caw8033hi42li-linux-libre-headers-cross-arm-linux-gnueabihf-5.15.49/include'
environment variable `CROSS_OBJCPLUS_INCLUDE_PATH' set to `/gnu/store/iqf68qlpsn4agrrx095fbn5mw6k8zhl4-htslib-1.19/include:/gnu/store/xcwqplswjbmvb113hbns7ysr4kp1jg87-zlib-1.3/include:/gnu/store/1qc1hd6afsqh05prnrx429cghafdjig8-htscodecs-1.6.0/include:/gnu/store/y73ipcgkq1k9b0dsibzi25fgfkvhc6al-python-3.10.7/include:/gnu/store/87q3p0k9kary1vzpci4pmg99scm6zvwk-gcc-cross-arm-linux-gnueabihf-14.2.0/include:/gnu/store/kdk5c2va0v32x9xbsziwpdlh29x63vb7-glibc-cross-arm-linux-gnueabihf-2.39/include:/gnu/store/q97gxljfvsmmd29w6i2caw8033hi42li-linux-libre-headers-cross-arm-linux-gnueabihf-5.15.49/include'
environment variable `AWKPATH' unset
environment variable `AWKLIBPATH' unset
environment variable `ACLOCAL_PATH' set to `/gnu/store/6fpkzhw6q09hqaiagnjg63fda2pn7sgq-automake-1.16.5/share/aclocal'
environment variable `BASH_LOADABLES_PATH' unset
environment variable `C_INCLUDE_PATH' set to `/gnu/store/87q3p0k9kary1vzpci4pmg99scm6zvwk-gcc-cross-arm-linux-gnueabihf-14.2.0/include:/gnu/store/crpic36n5wpk7vxyxw1idm99af9f20g7-binutils-cross-arm-linux-gnueabihf-2.41/include:/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/include:/gnu/store/544ga5n6nq8y2961ihigra6n6a0r99nn-file-5.45/include:/gnu/store/vrl2r0ps24k1a6yap2chjylv5rhbndvr-gawk-5.3.0/include:/gnu/store/fbaw0sb21gv02qq7gs9wg5y5wlpdgzih-xz-5.4.5/include:/gnu/store/lc6r1mh0jlcwixjziiw1zsx1my478rv1-make-4.4.1/include:/gnu/store/ylgkrq9j1gyfig2y66srmgsbyh9w20d9-binutils-2.41/include:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/include:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/include:/gnu/store/svghsdn1x3fyili8ij791nn25zba9bpf-linux-libre-headers-5.15.49/include'
environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/87q3p0k9kary1vzpci4pmg99scm6zvwk-gcc-cross-arm-linux-gnueabihf-14.2.0/include/c++:/gnu/store/87q3p0k9kary1vzpci4pmg99scm6zvwk-gcc-cross-arm-linux-gnueabihf-14.2.0/include:/gnu/store/crpic36n5wpk7vxyxw1idm99af9f20g7-binutils-cross-arm-linux-gnueabihf-2.41/include:/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/include:/gnu/store/544ga5n6nq8y2961ihigra6n6a0r99nn-file-5.45/include:/gnu/store/vrl2r0ps24k1a6yap2chjylv5rhbndvr-gawk-5.3.0/include:/gnu/store/fbaw0sb21gv02qq7gs9wg5y5wlpdgzih-xz-5.4.5/include:/gnu/store/lc6r1mh0jlcwixjziiw1zsx1my478rv1-make-4.4.1/include:/gnu/store/ylgkrq9j1gyfig2y66srmgsbyh9w20d9-binutils-2.41/include:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/include/c++:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/include:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/include:/gnu/store/svghsdn1x3fyili8ij791nn25zba9bpf-linux-libre-headers-5.15.49/include'
environment variable `OBJC_INCLUDE_PATH' set to `/gnu/store/87q3p0k9kary1vzpci4pmg99scm6zvwk-gcc-cross-arm-linux-gnueabihf-14.2.0/include:/gnu/store/crpic36n5wpk7vxyxw1idm99af9f20g7-binutils-cross-arm-linux-gnueabihf-2.41/include:/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/include:/gnu/store/544ga5n6nq8y2961ihigra6n6a0r99nn-file-5.45/include:/gnu/store/vrl2r0ps24k1a6yap2chjylv5rhbndvr-gawk-5.3.0/include:/gnu/store/fbaw0sb21gv02qq7gs9wg5y5wlpdgzih-xz-5.4.5/include:/gnu/store/lc6r1mh0jlcwixjziiw1zsx1my478rv1-make-4.4.1/include:/gnu/store/ylgkrq9j1gyfig2y66srmgsbyh9w20d9-binutils-2.41/include:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/include:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/include:/gnu/store/svghsdn1x3fyili8ij791nn25zba9bpf-linux-libre-headers-5.15.49/include'
environment variable `OBJCPLUS_INCLUDE_PATH' set to `/gnu/store/87q3p0k9kary1vzpci4pmg99scm6zvwk-gcc-cross-arm-linux-gnueabihf-14.2.0/include/c++:/gnu/store/87q3p0k9kary1vzpci4pmg99scm6zvwk-gcc-cross-arm-linux-gnueabihf-14.2.0/include:/gnu/store/crpic36n5wpk7vxyxw1idm99af9f20g7-binutils-cross-arm-linux-gnueabihf-2.41/include:/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/include:/gnu/store/544ga5n6nq8y2961ihigra6n6a0r99nn-file-5.45/include:/gnu/store/vrl2r0ps24k1a6yap2chjylv5rhbndvr-gawk-5.3.0/include:/gnu/store/fbaw0sb21gv02qq7gs9wg5y5wlpdgzih-xz-5.4.5/include:/gnu/store/lc6r1mh0jlcwixjziiw1zsx1my478rv1-make-4.4.1/include:/gnu/store/ylgkrq9j1gyfig2y66srmgsbyh9w20d9-binutils-2.41/include:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/include/c++:/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/include:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/include:/gnu/store/svghsdn1x3fyili8ij791nn25zba9bpf-linux-libre-headers-5.15.49/include'
environment variable `LIBRARY_PATH' set to `/gnu/store/crpic36n5wpk7vxyxw1idm99af9f20g7-binutils-cross-arm-linux-gnueabihf-2.41/lib:/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/lib:/gnu/store/544ga5n6nq8y2961ihigra6n6a0r99nn-file-5.45/lib:/gnu/store/vrl2r0ps24k1a6yap2chjylv5rhbndvr-gawk-5.3.0/lib:/gnu/store/fbaw0sb21gv02qq7gs9wg5y5wlpdgzih-xz-5.4.5/lib:/gnu/store/ylgkrq9j1gyfig2y66srmgsbyh9w20d9-binutils-2.41/lib:/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/lib:/gnu/store/vqdiyyqbrv4akp68pfya4j6m3pdbnhca-glibc-2.39-static/lib'
environment variable `GUIX_LOCPATH' set to `/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39/lib/locale'
environment variable `TZDIR' unset
environment variable `GUIX_PYTHONPATH' unset
environment variable `PYTHONTZPATH' unset
phase `set-paths' succeeded after 0.0 seconds
starting phase `install-locale'
using 'C.UTF-8' locale for category "LC_ALL"
phase `install-locale' succeeded after 0.0 seconds
starting phase `unpack'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/.gitignore' -> `./.gitignore'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/LICENSE' -> `./LICENSE'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/AUTHORS' -> `./AUTHORS'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/README.md' -> `./README.md'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/.travis.yml' -> `./.travis.yml'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/bootstrap' -> `./bootstrap'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/configure.ac' -> `./configure.ac'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/Makefile.am' -> `./Makefile.am'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/NEWS' -> `./NEWS'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/Changelog' -> `./Changelog'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/binary_installer.sh' -> `./binary_installer.sh'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/LoFreq-0.4.0.tar.gz' -> `./dist/LoFreq-0.4.0.tar.gz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/lofreq_star-2.0.0-linux-x86-64.tgz' -> `./dist/lofreq_star-2.0.0-linux-x86-64.tgz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/lofreq_star-2.0.0-beta-3-linux-x86-64.tgz' -> `./dist/lofreq_star-2.0.0-beta-3-linux-x86-64.tgz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/lofreq_star-2.1.2.tar.gz' -> `./dist/lofreq_star-2.1.2.tar.gz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/lofreq_star-2.1.1_linux-x86-64.tgz' -> `./dist/lofreq_star-2.1.1_linux-x86-64.tgz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/lofreq_star-2.1.1.tar.gz' -> `./dist/lofreq_star-2.1.1.tar.gz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/lofreq_star-2.1.2_linux-x86-64.tgz' -> `./dist/lofreq_star-2.1.2_linux-x86-64.tgz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/lofreq_star-2.1.1_macosx.tgz' -> `./dist/lofreq_star-2.1.1_macosx.tgz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/lofreq_star-2.0.0-beta-3.tar.gz' -> `./dist/lofreq_star-2.0.0-beta-3.tar.gz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/lofreq_star-2.1.4.tar.gz' -> `./dist/lofreq_star-2.1.4.tar.gz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/lofreq_star-2.1.5.tar.gz' -> `./dist/lofreq_star-2.1.5.tar.gz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/lofreq-0.5.0.tar.gz' -> `./dist/lofreq-0.5.0.tar.gz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/lofreq_star-2.1.3.1_linux-x86-64.tgz' -> `./dist/lofreq_star-2.1.3.1_linux-x86-64.tgz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/lofreq-v0.1.zip' -> `./dist/lofreq-v0.1.zip'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/lofreq_star-2.1.4_linux-x86-64.tgz' -> `./dist/lofreq_star-2.1.4_linux-x86-64.tgz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/lofreq_star-2.0.0-rc-1.tar.gz' -> `./dist/lofreq_star-2.0.0-rc-1.tar.gz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/lofreq_star-2.1.2_macosx.tgz' -> `./dist/lofreq_star-2.1.2_macosx.tgz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/LoFreq-0.2.tar.gz' -> `./dist/LoFreq-0.2.tar.gz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/lofreq_star-2.0.0-beta-2-macosx.tgz' -> `./dist/lofreq_star-2.0.0-beta-2-macosx.tgz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/lofreq_star-2.0.0-beta-macosx.tgz' -> `./dist/lofreq_star-2.0.0-beta-macosx.tgz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/lofreq_star-2.0.0-beta-linux-x86-64.tgz' -> `./dist/lofreq_star-2.0.0-beta-linux-x86-64.tgz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/lofreq_star-2.0.0-beta-2-linux-x86-64.tgz' -> `./dist/lofreq_star-2.0.0-beta-2-linux-x86-64.tgz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/lofreq_star-2.0.0-beta-3-macosx.tgz' -> `./dist/lofreq_star-2.0.0-beta-3-macosx.tgz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/LoFreq-0.3.tar.gz' -> `./dist/LoFreq-0.3.tar.gz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/lofreq_star-2.1.0.tar.gz' -> `./dist/lofreq_star-2.1.0.tar.gz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/lofreq_star-2.1.3.1.tar.gz' -> `./dist/lofreq_star-2.1.3.1.tar.gz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/lofreq_star-2.0.0.tar.gz' -> `./dist/lofreq_star-2.0.0.tar.gz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/lofreq_star-2.1.5_linux-x86-64.tgz' -> `./dist/lofreq_star-2.1.5_linux-x86-64.tgz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/dist/LoFreq-0.3.1.tar.gz' -> `./dist/LoFreq-0.3.1.tar.gz'
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`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/tools/phased_out/vcf.py.README' -> `./src/tools/phased_out/vcf.py.README'
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`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/tools/scripts/lofreq2_local.py' -> `./src/tools/scripts/lofreq2_local.py'
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`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/tools/scripts/lofreq2_vcfplot.py' -> `./src/tools/scripts/lofreq2_vcfplot.py'
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`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/tools/scripts/lofreq2_analyze_somatic_fn.py' -> `./src/tools/scripts/lofreq2_analyze_somatic_fn.py'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/tools/scripts/lofreq2_add_sample.py' -> `./src/tools/scripts/lofreq2_add_sample.py'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/uthash/.gitignore' -> `./src/uthash/.gitignore'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/uthash/LICENSE' -> `./src/uthash/LICENSE'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/uthash/uthash.h' -> `./src/uthash/uthash.h'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/uthash/Makefile.am' -> `./src/uthash/Makefile.am'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/cdflib90/.gitignore' -> `./src/cdflib90/.gitignore'
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`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/cdflib90/ipmpar.c' -> `./src/cdflib90/ipmpar.c'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/cdflib90/readme' -> `./src/cdflib90/readme'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/.gitignore' -> `./src/lofreq/.gitignore'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/multtest.h' -> `./src/lofreq/multtest.h'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/bam_index.c.README' -> `./src/lofreq/bam_index.c.README'
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`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/lofreq_checkref.h' -> `./src/lofreq/lofreq_checkref.h'
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`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/vcf.h' -> `./src/lofreq/vcf.h'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/samutils.c' -> `./src/lofreq/samutils.c'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/lofreq_viterbi.h' -> `./src/lofreq/lofreq_viterbi.h'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/lofreq_indelqual.h' -> `./src/lofreq/lofreq_indelqual.h'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/fet.h' -> `./src/lofreq/fet.h'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/lofreq_uniq.c' -> `./src/lofreq/lofreq_uniq.c'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/bam_index.c.LICENSE' -> `./src/lofreq/bam_index.c.LICENSE'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/lofreq_index.h' -> `./src/lofreq/lofreq_index.h'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/lofreq_alnqual.h' -> `./src/lofreq/lofreq_alnqual.h'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/viterbi.c' -> `./src/lofreq/viterbi.c'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/lofreq_vcfset.h' -> `./src/lofreq/lofreq_vcfset.h'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/Makefile.am' -> `./src/lofreq/Makefile.am'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/snpcaller.c' -> `./src/lofreq/snpcaller.c'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/defaults.h' -> `./src/lofreq/defaults.h'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/lofreq_bamstats.c' -> `./src/lofreq/lofreq_bamstats.c'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/fet.c' -> `./src/lofreq/fet.c'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/plp.h' -> `./src/lofreq/plp.h'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/log.c' -> `./src/lofreq/log.c'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/binom.c' -> `./src/lofreq/binom.c'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/fet.c.LICENSE' -> `./src/lofreq/fet.c.LICENSE'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/lofreq_viterbi.c' -> `./src/lofreq/lofreq_viterbi.c'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/lofreq_uniq.h' -> `./src/lofreq/lofreq_uniq.h'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/lofreq_filter.c' -> `./src/lofreq/lofreq_filter.c'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/lofreq_main.c' -> `./src/lofreq/lofreq_main.c'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/lofreq_checkref.c' -> `./src/lofreq/lofreq_checkref.c'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/kprobaln_ext.c' -> `./src/lofreq/kprobaln_ext.c'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/bedidx.c' -> `./src/lofreq/bedidx.c'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/bedidx.c.LICENSE' -> `./src/lofreq/bedidx.c.LICENSE'
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`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/lofreq_vcfset.c' -> `./src/lofreq/lofreq_vcfset.c'
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`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/lofreq/plp.c' -> `./src/lofreq/plp.c'
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`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/scripts/README' -> `./src/scripts/README'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/scripts/Makefile.am' -> `./src/scripts/Makefile.am'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/src/scripts/lofreq2_call_pparallel.py' -> `./src/scripts/lofreq2_call_pparallel.py'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/m4/ax_pthread.m4' -> `./m4/ax_pthread.m4'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/m4/ax_with_htslib.m4' -> `./m4/ax_with_htslib.m4'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/snakemake/Snakefile' -> `./snakemake/Snakefile'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/snakemake/ecoli-cfg.yaml' -> `./snakemake/ecoli-cfg.yaml'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/snakemake/cfg.yaml' -> `./snakemake/cfg.yaml'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/snakemake/dryrun.sh' -> `./snakemake/dryrun.sh'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/snakemake/data/sample1_R1.fastq.gz' -> `./snakemake/data/sample1_R1.fastq.gz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/snakemake/data/regions.bed' -> `./snakemake/data/regions.bed'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/snakemake/data/sample2.fastq.gz' -> `./snakemake/data/sample2.fastq.gz'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/snakemake/data/ref.fa' -> `./snakemake/data/ref.fa'
`/gnu/store/svyidazbz0808fdbvmkh31c4ma77abmc-lofreq-2.1.5-checkout/snakemake/data/sample1_R2.fastq.gz' -> `./snakemake/data/sample1_R2.fastq.gz'
phase `unpack' succeeded after 0.1 seconds
starting phase `set-source-file-times-to-1980'
phase `set-source-file-times-to-1980' succeeded after 0.0 seconds
starting phase `bootstrap'
running './bootstrap'
patch-shebang: ./bootstrap: changing `/bin/sh' to `/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin/sh'
sh: line 1: git: command not found
configure.ac:195: warning: AC_CONFIG_SUBDIRS: you should use literals
../../lib/autoconf/status.m4:1097: AC_CONFIG_SUBDIRS is expanded from...
m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from...
configure.ac:195: the top level
configure.ac:195: warning: AC_CONFIG_SUBDIRS: you should use literals
../../lib/autoconf/status.m4:1097: AC_CONFIG_SUBDIRS is expanded from...
m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from...
configure.ac:195: the top level
sh: line 1: git: command not found
configure.ac:195: warning: AC_CONFIG_SUBDIRS: you should use literals
../../lib/autoconf/status.m4:1097: AC_CONFIG_SUBDIRS is expanded from...
m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from...
configure.ac:195: the top level
configure.ac:52: installing './compile'
configure.ac:56: installing './config.guess'
configure.ac:56: installing './config.sub'
configure.ac:46: installing './install-sh'
configure.ac:46: installing './missing'
src/cdflib90/Makefile.am: installing './depcomp'
configure.ac:195: warning: AC_CONFIG_SUBDIRS: you should use literals
../../lib/autoconf/status.m4:1097: AC_CONFIG_SUBDIRS is expanded from...
m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from...
configure.ac:195: the top level
phase `bootstrap' succeeded after 2.2 seconds
starting phase `patch-usr-bin-file'
phase `patch-usr-bin-file' succeeded after 0.0 seconds
starting phase `patch-source-shebangs'
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phase `patch-source-shebangs' succeeded after 0.1 seconds
starting phase `configure'
source directory: "/tmp/guix-build-lofreq-2.1.5.drv-0/source" (relative from build: ".")
build directory: "/tmp/guix-build-lofreq-2.1.5.drv-0/source"
configure flags: ("CC_FOR_BUILD=gcc" "CONFIG_SHELL=/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin/bash" "SHELL=/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin/bash" "--prefix=/gnu/store/j4s4xamcn6vrmgxxxansjdsaf14bjf6z-lofreq-2.1.5" "--enable-fast-install" "--build=x86_64-unknown-linux-gnu" "--host=arm-linux-gnueabihf")
./configure: line 2210: git: command not found
configure: Configuring LoFreq_Star (version 2.1.5) for your system...

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checking whether it is safe to define __EXTENSIONS__... yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... arm-unknown-linux-gnueabihf
checking whether make sets $(MAKE)... (cached) no
checking for arm-linux-gnueabihf-ranlib... arm-linux-gnueabihf-ranlib
checking for arm-linux-gnueabihf-gcc... (cached) arm-linux-gnueabihf-gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether arm-linux-gnueabihf-gcc accepts -g... (cached) yes
checking for arm-linux-gnueabihf-gcc option to accept ISO C89... (cached) none needed
checking whether arm-linux-gnueabihf-gcc understands -c and -o together... (cached) yes
checking dependency style of arm-linux-gnueabihf-gcc... (cached) gcc3
checking how to run the C preprocessor... arm-linux-gnueabihf-gcc -E
checking for arm-linux-gnueabihf-gcc option to accept ISO C99... none needed
checking for ANSI C header files... (cached) yes
checking for an ANSI C-conforming const... yes
checking for size_t... yes
checking for inline... inline
checking if we have pthreads support... checking for the pthreads library -lpthreads... no
checking whether pthreads work without any flags... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking if more special flags are required for pthreads... no
checking for PTHREAD_PRIO_INHERIT... yes
checking for log in -lm... yes
checking for gzread in -lz... yes
checking for a Python interpreter with version >= 2.7... none
configure: error: no suitable Python interpreter found
error: in phase 'configure': uncaught exception:
%exception #<&invoke-error program: "/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin/bash" arguments: ("./configure" "CC_FOR_BUILD=gcc" "CONFIG_SHELL=/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin/bash" "SHELL=/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin/bash" "--prefix=/gnu/store/j4s4xamcn6vrmgxxxansjdsaf14bjf6z-lofreq-2.1.5" "--enable-fast-install" "--build=x86_64-unknown-linux-gnu" "--host=arm-linux-gnueabihf") exit-status: 1 term-signal: #f stop-signal: #f> 
phase `configure' failed after 5.4 seconds
command "/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin/bash" "./configure" "CC_FOR_BUILD=gcc" "CONFIG_SHELL=/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin/bash" "SHELL=/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16/bin/bash" "--prefix=/gnu/store/j4s4xamcn6vrmgxxxansjdsaf14bjf6z-lofreq-2.1.5" "--enable-fast-install" "--build=x86_64-unknown-linux-gnu" "--host=arm-linux-gnueabihf" failed with status 1
build process 10 exited with status 256