starting phase `set-SOURCE-DATE-EPOCH' phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds starting phase `set-paths' environment variable `PATH' set to `/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/bin:/gnu/store/v6f44zccwh9z5zk3pjlywjybbi8n2hjh-tar-1.32/bin:/gnu/store/ncydgq2znms5n1d2k5yqshhf58nsixwv-gzip-1.10/bin:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/bin:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/bin:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/bin:/gnu/store/n4n560pfvvw50a9369axw5vj5rrqfj1n-diffutils-3.7/bin:/gnu/store/cd5qf3kcnlq35p9k392pjdpdzpsnds70-patch-2.7.6/bin:/gnu/store/hic7snhayfl7m6cpfqqr73nmm19bpqkg-findutils-4.7.0/bin:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/bin:/gnu/store/ishk7fswcs4gkwcp8mh788z4mvvl9bxh-sed-4.8/bin:/gnu/store/bhs4rj58v8j1narb2454raan2ps38xd8-grep-3.4/bin:/gnu/store/57xj5gcy1jbl9ai2lnrqnpr0dald9i65-coreutils-8.32/bin:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/bin:/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin:/gnu/store/mpa04aq8lblbcviyxywxcsb1zbi0mf39-ld-wrapper-0/bin:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/bin:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/bin:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/sbin' environment variable `R_LIBS_SITE' set to `/gnu/store/qh6zfmrmb7srqb1h9hgm64gbhp7cm4fg-r-biocgenerics-0.36.1/site-library/:/gnu/store/086qgd6pmyrgg3w8q65iyilxc5i8mzvw-r-crayon-1.4.1/site-library/:/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/:/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/:/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/' environment variable `BASH_LOADABLES_PATH' unset environment variable `C_INCLUDE_PATH' set to `/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/include:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/include:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/include:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/include:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/include:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/include:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/include:/gnu/store/gfapkk5c6hvl1d94m4sqnhn7f9l5gqyh-linux-libre-headers-5.4.20/include' environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/include:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/include:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/include:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/include:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/include:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/include:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include/c++:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/include:/gnu/store/gfapkk5c6hvl1d94m4sqnhn7f9l5gqyh-linux-libre-headers-5.4.20/include' environment variable `LIBRARY_PATH' set to `/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/lib:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/lib:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/lib:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/lib:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/lib:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/lib:/gnu/store/s3dcqzwqaakv1yx37by9chksdbkgih17-glibc-2.31-static/lib:/gnu/store/hwcky7446s952w0mwchhmm211ll07zrq-glibc-utf8-locales-2.31/lib' environment variable `GUIX_LOCPATH' set to `/gnu/store/hwcky7446s952w0mwchhmm211ll07zrq-glibc-utf8-locales-2.31/lib/locale' phase `set-paths' succeeded after 0.0 seconds starting phase `install-locale' using 'en_US.utf8' locale for category "LC_ALL" phase `install-locale' succeeded after 0.0 seconds starting phase `unpack' Biostrings/CHANGES Biostrings/DESCRIPTION Biostrings/NAMESPACE Biostrings/NEWS Biostrings/R/ Biostrings/R/00datacache.R Biostrings/R/AMINO_ACID_CODE.R Biostrings/R/AlignedXStringSet-class.R Biostrings/R/GENETIC_CODE.R Biostrings/R/IUPAC_CODE_MAP.R Biostrings/R/InDel-class.R Biostrings/R/MIndex-class.R Biostrings/R/MaskedXString-class.R Biostrings/R/MultipleAlignment.R Biostrings/R/PDict-class.R Biostrings/R/PairwiseAlignments-class.R Biostrings/R/PairwiseAlignments-io.R Biostrings/R/PairwiseAlignmentsSingleSubject-class.R Biostrings/R/QualityScaledXStringSet.R Biostrings/R/SparseList-class.R Biostrings/R/XString-class.R Biostrings/R/XStringCodec-class.R Biostrings/R/XStringPartialMatches-class.R Biostrings/R/XStringQuality-class.R Biostrings/R/XStringSet-class.R Biostrings/R/XStringSet-comparison.R Biostrings/R/XStringSet-io.R Biostrings/R/XStringSetList-class.R Biostrings/R/XStringViews-class.R Biostrings/R/align-utils.R Biostrings/R/chartr.R Biostrings/R/coloring.R Biostrings/R/dinucleotideFrequencyTest.R Biostrings/R/findPalindromes.R Biostrings/R/getSeq.R Biostrings/R/injectHardMask.R Biostrings/R/letter.R Biostrings/R/letterFrequency.R Biostrings/R/lowlevel-matching.R Biostrings/R/maskMotif.R Biostrings/R/match-utils.R Biostrings/R/matchLRPatterns.R Biostrings/R/matchPDict.R Biostrings/R/matchPWM.R Biostrings/R/matchPattern.R Biostrings/R/matchProbePair.R Biostrings/R/matchprobes.R Biostrings/R/misc.R Biostrings/R/needwunsQS.R Biostrings/R/padAndClip.R Biostrings/R/pairwiseAlignment.R Biostrings/R/pmatchPattern.R Biostrings/R/replaceAt.R Biostrings/R/replaceLetterAt.R Biostrings/R/reverseComplement.R Biostrings/R/seqtype.R Biostrings/R/stringDist.R Biostrings/R/strsplit-methods.R Biostrings/R/toComplex.R Biostrings/R/translate.R Biostrings/R/trimLRPatterns.R Biostrings/R/utils.R Biostrings/R/xscat.R Biostrings/R/zzz.R Biostrings/README.md Biostrings/TODO Biostrings/build/ Biostrings/build/vignette.rds Biostrings/data/ Biostrings/data/BLOSUM100.rda Biostrings/data/BLOSUM45.rda Biostrings/data/BLOSUM50.rda Biostrings/data/BLOSUM62.rda Biostrings/data/BLOSUM80.rda Biostrings/data/HNF4alpha.rda Biostrings/data/PAM120.rda Biostrings/data/PAM250.rda Biostrings/data/PAM30.rda Biostrings/data/PAM40.rda Biostrings/data/PAM70.rda Biostrings/data/phiX174Phage.rda Biostrings/data/srPhiX174.rda Biostrings/data/yeastSEQCHR1.rda Biostrings/devtools/ Biostrings/devtools/rgrep-tip.txt Biostrings/inst/ Biostrings/inst/doc/ Biostrings/inst/doc/Biostrings2Classes.R Biostrings/inst/doc/Biostrings2Classes.Rnw Biostrings/inst/doc/Biostrings2Classes.pdf Biostrings/inst/doc/BiostringsQuickOverview.Rnw Biostrings/inst/doc/BiostringsQuickOverview.pdf Biostrings/inst/doc/MultipleAlignments.R Biostrings/inst/doc/MultipleAlignments.Rnw Biostrings/inst/doc/MultipleAlignments.pdf Biostrings/inst/doc/PairwiseAlignments.R Biostrings/inst/doc/PairwiseAlignments.Rnw Biostrings/inst/doc/PairwiseAlignments.pdf Biostrings/inst/doc/matchprobes.R Biostrings/inst/doc/matchprobes.Rnw Biostrings/inst/doc/matchprobes.pdf Biostrings/inst/extdata/ Biostrings/inst/extdata/Phylip.txt Biostrings/inst/extdata/README Biostrings/inst/extdata/Sc.fa Biostrings/inst/extdata/Sp.fa Biostrings/inst/extdata/dm3_upstream2000.fa.gz Biostrings/inst/extdata/fastaEx.fa Biostrings/inst/extdata/hg18chr8_gap.txt Biostrings/inst/extdata/hg18chrY_gap.txt Biostrings/inst/extdata/msx2_mRNA.aln Biostrings/inst/extdata/s_1_sequence.txt Biostrings/inst/extdata/someORF.fa Biostrings/inst/extdata/someORF.fa.gz Biostrings/inst/include/ Biostrings/inst/include/Biostrings_defines.h Biostrings/inst/include/Biostrings_interface.h Biostrings/inst/include/_Biostrings_stubs.c Biostrings/inst/unitTests/ Biostrings/inst/unitTests/test_MultipleAlignment.R Biostrings/inst/unitTests/test_XString.R Biostrings/inst/unitTests/test_XStringSet.R Biostrings/inst/unitTests/test_XStringSetList.R Biostrings/inst/unitTests/test_findPalindromes.R Biostrings/inst/unitTests/test_matchDNAPattern.R.FIXME Biostrings/inst/unitTests/test_matchPDict.R Biostrings/inst/unitTests/test_pairwiseAlignment.R Biostrings/inst/unitTests/test_twoWayAlphabetFrequency.R Biostrings/man/ Biostrings/man/AAString-class.Rd Biostrings/man/AMINO_ACID_CODE.Rd Biostrings/man/AlignedXStringSet-class.Rd Biostrings/man/Biostrings-internals.Rd Biostrings/man/DNAString-class.Rd Biostrings/man/GENETIC_CODE.Rd Biostrings/man/HNF4alpha.Rd Biostrings/man/IUPAC_CODE_MAP.Rd Biostrings/man/InDel-class.Rd Biostrings/man/MIndex-class.Rd Biostrings/man/MaskedXString-class.Rd Biostrings/man/MultipleAlignment-class.Rd Biostrings/man/PDict-class.Rd Biostrings/man/PairwiseAlignments-class.Rd Biostrings/man/PairwiseAlignments-io.Rd Biostrings/man/QualityScaledXStringSet-class.Rd Biostrings/man/RNAString-class.Rd Biostrings/man/XString-class.Rd Biostrings/man/XStringPartialMatches-class.Rd Biostrings/man/XStringQuality-class.Rd Biostrings/man/XStringSet-class.Rd Biostrings/man/XStringSet-comparison.Rd Biostrings/man/XStringSet-io.Rd Biostrings/man/XStringSetList-class.Rd Biostrings/man/XStringViews-class.Rd Biostrings/man/align-utils.Rd Biostrings/man/chartr.Rd Biostrings/man/detail.Rd Biostrings/man/dinucleotideFrequencyTest.Rd Biostrings/man/findPalindromes.Rd Biostrings/man/getSeq.Rd Biostrings/man/gregexpr2.Rd Biostrings/man/injectHardMask.Rd Biostrings/man/letter.Rd Biostrings/man/letterFrequency.Rd Biostrings/man/longestConsecutive.Rd Biostrings/man/lowlevel-matching.Rd Biostrings/man/maskMotif.Rd Biostrings/man/match-utils.Rd Biostrings/man/matchLRPatterns.Rd Biostrings/man/matchPDict-exact.Rd Biostrings/man/matchPDict-inexact.Rd Biostrings/man/matchPWM.Rd Biostrings/man/matchPattern.Rd Biostrings/man/matchProbePair.Rd Biostrings/man/matchprobes.Rd Biostrings/man/misc.Rd Biostrings/man/needwunsQS.Rd Biostrings/man/nucleotideFrequency.Rd Biostrings/man/padAndClip.Rd Biostrings/man/pairwiseAlignment.Rd Biostrings/man/phiX174Phage.Rd Biostrings/man/pid.Rd Biostrings/man/pmatchPattern.Rd Biostrings/man/replaceAt.Rd Biostrings/man/replaceLetterAt.Rd Biostrings/man/reverseComplement.Rd Biostrings/man/stringDist.Rd Biostrings/man/substitution_matrices.Rd Biostrings/man/toComplex.Rd Biostrings/man/translate.Rd Biostrings/man/trimLRPatterns.Rd Biostrings/man/xscat.Rd Biostrings/man/yeastSEQCHR1.Rd Biostrings/src/ Biostrings/src/BAB_class.c Biostrings/src/Biostrings.h Biostrings/src/BitMatrix.c Biostrings/src/IRanges_stubs.c Biostrings/src/MIndex_class.c Biostrings/src/PreprocessedTB_class.c Biostrings/src/R_init_Biostrings.c Biostrings/src/RoSeqs_utils.c Biostrings/src/S4Vectors_stubs.c Biostrings/src/SparseList_utils.c Biostrings/src/XStringSetList_class.c Biostrings/src/XStringSet_class.c Biostrings/src/XString_class.c Biostrings/src/XVector_stubs.c Biostrings/src/align_needwunsQS.c Biostrings/src/align_pairwiseAlignment.c Biostrings/src/align_utils.c Biostrings/src/find_palindromes.c Biostrings/src/gtestsim.c Biostrings/src/inject_code.c Biostrings/src/letter_frequency.c Biostrings/src/lowlevel_matching.c Biostrings/src/match_PWM.c Biostrings/src/match_pattern.c Biostrings/src/match_pattern_boyermoore.c Biostrings/src/match_pattern_indels.c Biostrings/src/match_pattern_shiftor.c Biostrings/src/match_pdict.c Biostrings/src/match_pdict_ACtree2.c Biostrings/src/match_pdict_Twobit.c Biostrings/src/match_pdict_utils.c Biostrings/src/match_reporting.c Biostrings/src/matchprobes.c Biostrings/src/pmatchPattern.c Biostrings/src/read_fasta_files.c Biostrings/src/read_fastq_files.c Biostrings/src/replaceAt.c Biostrings/src/replace_letter_at.c Biostrings/src/strutils.c Biostrings/src/translate.c Biostrings/src/unstrsplit_methods.c Biostrings/src/utils.c Biostrings/src/xscat.c Biostrings/tests/ Biostrings/tests/run_unitTests.R Biostrings/vignettes/ Biostrings/vignettes/Biostrings2Classes.Rnw Biostrings/vignettes/BiostringsQuickOverview.Rnw Biostrings/vignettes/MultipleAlignments.Rnw Biostrings/vignettes/PairwiseAlignments.Rnw Biostrings/vignettes/SolexaYi2-benchmark.txt Biostrings/vignettes/matchprobes.Rnw phase `unpack' succeeded after 0.3 seconds starting phase `patch-usr-bin-file' phase `patch-usr-bin-file' succeeded after 0.0 seconds starting phase `patch-source-shebangs' phase `patch-source-shebangs' succeeded after 0.0 seconds starting phase `patch-generated-file-shebangs' phase `patch-generated-file-shebangs' succeeded after 0.0 seconds starting phase `install' * installing *source* package ‘Biostrings’ ... ** using staged installation ** libs gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c BAB_class.c -o BAB_class.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c BitMatrix.c -o BitMatrix.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c IRanges_stubs.c -o IRanges_stubs.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c MIndex_class.c -o MIndex_class.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c PreprocessedTB_class.c -o PreprocessedTB_class.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c R_init_Biostrings.c -o R_init_Biostrings.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c RoSeqs_utils.c -o RoSeqs_utils.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c SparseList_utils.c -o SparseList_utils.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c XStringSetList_class.c -o XStringSetList_class.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c XStringSet_class.c -o XStringSet_class.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c XString_class.c -o XString_class.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c XVector_stubs.c -o XVector_stubs.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c align_needwunsQS.c -o align_needwunsQS.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c align_pairwiseAlignment.c -o align_pairwiseAlignment.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c align_utils.c -o align_utils.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c find_palindromes.c -o find_palindromes.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c gtestsim.c -o gtestsim.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c inject_code.c -o inject_code.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c letter_frequency.c -o letter_frequency.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c lowlevel_matching.c -o lowlevel_matching.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c match_PWM.c -o match_PWM.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c match_pattern.c -o match_pattern.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c match_pattern_boyermoore.c -o match_pattern_boyermoore.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c match_pattern_indels.c -o match_pattern_indels.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c match_pattern_shiftor.c -o match_pattern_shiftor.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c match_pdict.c -o match_pdict.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c match_pdict_ACtree2.c -o match_pdict_ACtree2.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c match_pdict_Twobit.c -o match_pdict_Twobit.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c match_pdict_utils.c -o match_pdict_utils.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c match_reporting.c -o match_reporting.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c matchprobes.c -o matchprobes.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c pmatchPattern.c -o pmatchPattern.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c read_fasta_files.c -o read_fasta_files.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c read_fastq_files.c -o read_fastq_files.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c replaceAt.c -o replaceAt.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c replace_letter_at.c -o replace_letter_at.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c strutils.c -o strutils.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c translate.c -o translate.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c unstrsplit_methods.c -o unstrsplit_methods.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I'/gnu/store/b0bc60mqd508mql8q64clpxpa5hd23x7-r-s4vectors-0.28.1/site-library/S4Vectors/include' -I'/gnu/store/i4hzw1q7b6mwd7qvvgib35v9lj4l1gaf-r-iranges-2.24.1/site-library/IRanges/include' -I'/gnu/store/xzjl7y1kwsla3nj5kx4w3y4z9nqgqxgb-r-xvector-0.30.0/site-library/XVector/include' -I/usr/local/include -fpic -g -O2 -c xscat.c -o xscat.o gcc -shared -L/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/lib -L/usr/local/lib -o Biostrings.so BAB_class.o BitMatrix.o IRanges_stubs.o MIndex_class.o PreprocessedTB_class.o R_init_Biostrings.o RoSeqs_utils.o S4Vectors_stubs.o SparseList_utils.o XStringSetList_class.o XStringSet_class.o XString_class.o XVector_stubs.o align_needwunsQS.o align_pairwiseAlignment.o align_utils.o find_palindromes.o gtestsim.o inject_code.o letter_frequency.o lowlevel_matching.o match_PWM.o match_pattern.o match_pattern_boyermoore.o match_pattern_indels.o match_pattern_shiftor.o match_pdict.o match_pdict_ACtree2.o match_pdict_Twobit.o match_pdict_utils.o match_reporting.o matchprobes.o pmatchPattern.o read_fasta_files.o read_fastq_files.o replaceAt.o replace_letter_at.o strutils.o translate.o unstrsplit_methods.o utils.o xscat.o -L/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/lib -lR installing to /gnu/store/4299v5359zqkjwsmlldnj8sjjjsdc4zi-r-biostrings-2.58.0/site-library/00LOCK-Biostrings/00new/Biostrings/libs ** R ** data ** inst ** tests ** byte-compile and prepare package for lazy loading in method for ‘twoWayAlphabetFrequencyByQuality’ with signature ‘"QualityScaledXStringSet"’: no definition for class “QualityScaledXStringSet” Creating a new generic function for ‘strsplit’ in package ‘Biostrings’ Creating a generic function for ‘ls’ from package ‘base’ in package ‘Biostrings’ Creating a new generic function for ‘offset’ in package ‘Biostrings’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Biostrings) phase `install' succeeded after 42.9 seconds starting phase `check' Testing examples for package ‘Biostrings’ phase `check' succeeded after 7.1 seconds starting phase `patch-shebangs' phase `patch-shebangs' succeeded after 0.0 seconds starting phase `strip' phase `strip' succeeded after 0.0 seconds starting phase `validate-runpath' phase `validate-runpath' succeeded after 0.0 seconds starting phase `validate-documentation-location' phase `validate-documentation-location' succeeded after 0.0 seconds starting phase `delete-info-dir-file' phase `delete-info-dir-file' succeeded after 0.0 seconds starting phase `patch-dot-desktop-files' phase `patch-dot-desktop-files' succeeded after 0.0 seconds starting phase `install-license-files' installing 0 license files from '.' phase `install-license-files' succeeded after 0.0 seconds starting phase `reset-gzip-timestamps' phase `reset-gzip-timestamps' succeeded after 0.0 seconds starting phase `compress-documentation' phase `compress-documentation' succeeded after 0.0 seconds