starting phase `set-SOURCE-DATE-EPOCH' phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds starting phase `set-paths' environment variable `PATH' set to `/gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin:/gnu/store/krpyb0zi700dcrg9cc8932w4v0qivdg9-pkg-config-0.29.2/bin:/gnu/store/a9f7wmc75hbpg520phw9z4l9asm3qvsw-bzip2-1.0.8/bin:/gnu/store/nwab4aj8jy6qbjrg1a3pmsmmqw6dym20-libstadenio-1.14.8/bin:/gnu/store/r7k859hmcnkazf492fasqvk25jflnfk6-xz-5.2.4/bin:/gnu/store/v6f44zccwh9z5zk3pjlywjybbi8n2hjh-tar-1.32/bin:/gnu/store/ncydgq2znms5n1d2k5yqshhf58nsixwv-gzip-1.10/bin:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/bin:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/bin:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/bin:/gnu/store/n4n560pfvvw50a9369axw5vj5rrqfj1n-diffutils-3.7/bin:/gnu/store/cd5qf3kcnlq35p9k392pjdpdzpsnds70-patch-2.7.6/bin:/gnu/store/hic7snhayfl7m6cpfqqr73nmm19bpqkg-findutils-4.7.0/bin:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/bin:/gnu/store/ishk7fswcs4gkwcp8mh788z4mvvl9bxh-sed-4.8/bin:/gnu/store/bhs4rj58v8j1narb2454raan2ps38xd8-grep-3.4/bin:/gnu/store/57xj5gcy1jbl9ai2lnrqnpr0dald9i65-coreutils-8.32/bin:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/bin:/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin:/gnu/store/mpa04aq8lblbcviyxywxcsb1zbi0mf39-ld-wrapper-0/bin:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/bin:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/bin:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/sbin' environment variable `CMAKE_PREFIX_PATH' set to `/gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/:/gnu/store/krpyb0zi700dcrg9cc8932w4v0qivdg9-pkg-config-0.29.2/:/gnu/store/kxabg9r2wnb4inc5lvh7r4wxnpj5f8kr-boost-1.72.0/:/gnu/store/a9f7wmc75hbpg520phw9z4l9asm3qvsw-bzip2-1.0.8/:/gnu/store/m34fpn6y10z88047qrk6fjmdsimag9hf-cereal-1.2.1/:/gnu/store/n50ikpnyzdda0zklwnmqasklcrif2csg-eigen-3.3.8/:/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/:/gnu/store/nzygsjdnr69gmqhfchys2dkb8lnra89x-jemalloc-5.2.1/:/gnu/store/xdckxk0v2vfgvqhxprgw00gwf8d8xclr-libgff-1.0/:/gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/:/gnu/store/jfyabybqqsqnai8g5j34i5s8h8impsrm-libdivsufsort-2.0.1/:/gnu/store/nwab4aj8jy6qbjrg1a3pmsmmqw6dym20-libstadenio-1.14.8/:/gnu/store/r7k859hmcnkazf492fasqvk25jflnfk6-xz-5.2.4/:/gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/:/gnu/store/v6f44zccwh9z5zk3pjlywjybbi8n2hjh-tar-1.32/:/gnu/store/ncydgq2znms5n1d2k5yqshhf58nsixwv-gzip-1.10/:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/:/gnu/store/n4n560pfvvw50a9369axw5vj5rrqfj1n-diffutils-3.7/:/gnu/store/cd5qf3kcnlq35p9k392pjdpdzpsnds70-patch-2.7.6/:/gnu/store/hic7snhayfl7m6cpfqqr73nmm19bpqkg-findutils-4.7.0/:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/:/gnu/store/ishk7fswcs4gkwcp8mh788z4mvvl9bxh-sed-4.8/:/gnu/store/bhs4rj58v8j1narb2454raan2ps38xd8-grep-3.4/:/gnu/store/57xj5gcy1jbl9ai2lnrqnpr0dald9i65-coreutils-8.32/:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/:/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/:/gnu/store/mpa04aq8lblbcviyxywxcsb1zbi0mf39-ld-wrapper-0/:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/:/gnu/store/s3dcqzwqaakv1yx37by9chksdbkgih17-glibc-2.31-static/:/gnu/store/hwcky7446s952w0mwchhmm211ll07zrq-glibc-utf8-locales-2.31/:/gnu/store/gfapkk5c6hvl1d94m4sqnhn7f9l5gqyh-linux-libre-headers-5.4.20/' environment variable `SSL_CERT_DIR' unset environment variable `SSL_CERT_FILE' unset environment variable `PKG_CONFIG_PATH' set to `/gnu/store/n50ikpnyzdda0zklwnmqasklcrif2csg-eigen-3.3.8/share/pkgconfig:/gnu/store/nzygsjdnr69gmqhfchys2dkb8lnra89x-jemalloc-5.2.1/lib/pkgconfig:/gnu/store/jfyabybqqsqnai8g5j34i5s8h8impsrm-libdivsufsort-2.0.1/lib/pkgconfig:/gnu/store/r7k859hmcnkazf492fasqvk25jflnfk6-xz-5.2.4/lib/pkgconfig:/gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/lib/pkgconfig:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/lib/pkgconfig' environment variable `BASH_LOADABLES_PATH' unset environment variable `C_INCLUDE_PATH' set to `/gnu/store/kxabg9r2wnb4inc5lvh7r4wxnpj5f8kr-boost-1.72.0/include:/gnu/store/a9f7wmc75hbpg520phw9z4l9asm3qvsw-bzip2-1.0.8/include:/gnu/store/m34fpn6y10z88047qrk6fjmdsimag9hf-cereal-1.2.1/include:/gnu/store/n50ikpnyzdda0zklwnmqasklcrif2csg-eigen-3.3.8/include:/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include:/gnu/store/nzygsjdnr69gmqhfchys2dkb8lnra89x-jemalloc-5.2.1/include:/gnu/store/xdckxk0v2vfgvqhxprgw00gwf8d8xclr-libgff-1.0/include:/gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include:/gnu/store/jfyabybqqsqnai8g5j34i5s8h8impsrm-libdivsufsort-2.0.1/include:/gnu/store/nwab4aj8jy6qbjrg1a3pmsmmqw6dym20-libstadenio-1.14.8/include:/gnu/store/r7k859hmcnkazf492fasqvk25jflnfk6-xz-5.2.4/include:/gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/include:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/include:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/include:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/include:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/include:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/include:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/include:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/include:/gnu/store/gfapkk5c6hvl1d94m4sqnhn7f9l5gqyh-linux-libre-headers-5.4.20/include' environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/kxabg9r2wnb4inc5lvh7r4wxnpj5f8kr-boost-1.72.0/include:/gnu/store/a9f7wmc75hbpg520phw9z4l9asm3qvsw-bzip2-1.0.8/include:/gnu/store/m34fpn6y10z88047qrk6fjmdsimag9hf-cereal-1.2.1/include:/gnu/store/n50ikpnyzdda0zklwnmqasklcrif2csg-eigen-3.3.8/include:/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include:/gnu/store/nzygsjdnr69gmqhfchys2dkb8lnra89x-jemalloc-5.2.1/include:/gnu/store/xdckxk0v2vfgvqhxprgw00gwf8d8xclr-libgff-1.0/include:/gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include:/gnu/store/jfyabybqqsqnai8g5j34i5s8h8impsrm-libdivsufsort-2.0.1/include:/gnu/store/nwab4aj8jy6qbjrg1a3pmsmmqw6dym20-libstadenio-1.14.8/include:/gnu/store/r7k859hmcnkazf492fasqvk25jflnfk6-xz-5.2.4/include:/gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/include:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/include:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/include:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/include:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/include:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/include:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/include:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include/c++:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/include:/gnu/store/gfapkk5c6hvl1d94m4sqnhn7f9l5gqyh-linux-libre-headers-5.4.20/include' environment variable `LIBRARY_PATH' set to `/gnu/store/kxabg9r2wnb4inc5lvh7r4wxnpj5f8kr-boost-1.72.0/lib:/gnu/store/a9f7wmc75hbpg520phw9z4l9asm3qvsw-bzip2-1.0.8/lib:/gnu/store/nzygsjdnr69gmqhfchys2dkb8lnra89x-jemalloc-5.2.1/lib:/gnu/store/xdckxk0v2vfgvqhxprgw00gwf8d8xclr-libgff-1.0/lib:/gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/lib:/gnu/store/jfyabybqqsqnai8g5j34i5s8h8impsrm-libdivsufsort-2.0.1/lib:/gnu/store/nwab4aj8jy6qbjrg1a3pmsmmqw6dym20-libstadenio-1.14.8/lib:/gnu/store/r7k859hmcnkazf492fasqvk25jflnfk6-xz-5.2.4/lib:/gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/lib:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/lib:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/lib:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/lib:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/lib:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/lib:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/lib:/gnu/store/s3dcqzwqaakv1yx37by9chksdbkgih17-glibc-2.31-static/lib:/gnu/store/hwcky7446s952w0mwchhmm211ll07zrq-glibc-utf8-locales-2.31/lib' environment variable `GUIX_LOCPATH' set to `/gnu/store/hwcky7446s952w0mwchhmm211ll07zrq-glibc-utf8-locales-2.31/lib/locale' phase `set-paths' succeeded after 0.5 seconds starting phase `install-locale' using 'en_US.utf8' locale for category "LC_ALL" phase `install-locale' succeeded after 0.0 seconds starting phase `unpack' salmon-0.13.1-checkout/ salmon-0.13.1-checkout/.clang-format salmon-0.13.1-checkout/.cmakelintrc salmon-0.13.1-checkout/.drone/ salmon-0.13.1-checkout/.drone/build.sh salmon-0.13.1-checkout/.drone/copy_build.sh salmon-0.13.1-checkout/.drone/test_quant.sh salmon-0.13.1-checkout/.drone.yml salmon-0.13.1-checkout/.drone.yml.sig salmon-0.13.1-checkout/.github/ salmon-0.13.1-checkout/.github/ISSUE_TEMPLATE/ salmon-0.13.1-checkout/.github/ISSUE_TEMPLATE/bug_report.md salmon-0.13.1-checkout/.gitignore salmon-0.13.1-checkout/.travis.yml salmon-0.13.1-checkout/CMakeLists.txt salmon-0.13.1-checkout/LICENSE salmon-0.13.1-checkout/README.md salmon-0.13.1-checkout/cmake/ salmon-0.13.1-checkout/cmake/Modules/ salmon-0.13.1-checkout/cmake/Modules/FindJellyfish.cmake salmon-0.13.1-checkout/cmake/Modules/FindJemalloc.cmake salmon-0.13.1-checkout/cmake/Modules/FindTBB.cmake salmon-0.13.1-checkout/cmake/Modules/FindTcmalloc.cmake salmon-0.13.1-checkout/cmake/PostInstall.cmake salmon-0.13.1-checkout/cmake/SimpleTest.cmake salmon-0.13.1-checkout/cmake/TestSalmonFMD.cmake salmon-0.13.1-checkout/cmake/TestSalmonQuasi.cmake salmon-0.13.1-checkout/cmake/UnitTests.cmake salmon-0.13.1-checkout/current_version.txt salmon-0.13.1-checkout/doc/ salmon-0.13.1-checkout/doc/FileFormats.md salmon-0.13.1-checkout/doc/Makefile salmon-0.13.1-checkout/doc/license-header.txt salmon-0.13.1-checkout/doc/source/ salmon-0.13.1-checkout/doc/source/ReadLibraryIllustration.png salmon-0.13.1-checkout/doc/source/alevin.rst salmon-0.13.1-checkout/doc/source/building.rst salmon-0.13.1-checkout/doc/source/conf.py salmon-0.13.1-checkout/doc/source/file_formats.rst salmon-0.13.1-checkout/doc/source/index.rst salmon-0.13.1-checkout/doc/source/library_type.rst salmon-0.13.1-checkout/doc/source/license.rst salmon-0.13.1-checkout/doc/source/salmon.rst salmon-0.13.1-checkout/doc/steps_to_prepare_release.md salmon-0.13.1-checkout/docker/ salmon-0.13.1-checkout/docker/Dockerfile salmon-0.13.1-checkout/docker/build_test.sh salmon-0.13.1-checkout/include/ salmon-0.13.1-checkout/include/AlevinHash.hpp salmon-0.13.1-checkout/include/AlevinOpts.hpp salmon-0.13.1-checkout/include/AlevinTypes.hpp salmon-0.13.1-checkout/include/AlevinUtils.hpp salmon-0.13.1-checkout/include/AlignmentGroup.hpp salmon-0.13.1-checkout/include/AlignmentLibrary.hpp salmon-0.13.1-checkout/include/AlignmentModel.hpp salmon-0.13.1-checkout/include/AtomicMatrix.hpp salmon-0.13.1-checkout/include/BAMQueue.hpp salmon-0.13.1-checkout/include/BAMQueue.tpp salmon-0.13.1-checkout/include/BAMUtils.hpp salmon-0.13.1-checkout/include/BWAMemStaticFuncs.hpp salmon-0.13.1-checkout/include/BWAUtils.hpp salmon-0.13.1-checkout/include/BarcodeGroup.hpp salmon-0.13.1-checkout/include/BarcodeModel.hpp salmon-0.13.1-checkout/include/BiasParams.hpp salmon-0.13.1-checkout/include/BinaryLiteral.hpp salmon-0.13.1-checkout/include/BootstrapWriter.hpp salmon-0.13.1-checkout/include/ClusterForest.hpp salmon-0.13.1-checkout/include/CollapsedCellOptimizer.hpp salmon-0.13.1-checkout/include/CollapsedEMOptimizer.hpp salmon-0.13.1-checkout/include/CollapsedGibbsSampler.hpp salmon-0.13.1-checkout/include/CommonTypes.hpp salmon-0.13.1-checkout/include/DedupUMI.hpp salmon-0.13.1-checkout/include/DistributionUtils.hpp salmon-0.13.1-checkout/include/EMUtils.hpp salmon-0.13.1-checkout/include/EffectiveLengthStats.hpp salmon-0.13.1-checkout/include/EquivalenceClassBuilder.hpp salmon-0.13.1-checkout/include/FASTAParser.hpp salmon-0.13.1-checkout/include/FastxParser.hpp salmon-0.13.1-checkout/include/FastxParserThreadUtils.hpp salmon-0.13.1-checkout/include/Filter.hpp salmon-0.13.1-checkout/include/ForgettingMassCalculator.hpp salmon-0.13.1-checkout/include/FragmentLengthDistribution.hpp salmon-0.13.1-checkout/include/FragmentList.hpp salmon-0.13.1-checkout/include/FragmentStartPositionDistribution.hpp salmon-0.13.1-checkout/include/GCFragModel.hpp salmon-0.13.1-checkout/include/GZipWriter.hpp salmon-0.13.1-checkout/include/GenomicFeature.hpp salmon-0.13.1-checkout/include/Graph.hpp salmon-0.13.1-checkout/include/IOUtils.hpp salmon-0.13.1-checkout/include/IndexVersionInfo.hpp salmon-0.13.1-checkout/include/KmerContext.hpp salmon-0.13.1-checkout/include/KmerIntervalMap.hpp salmon-0.13.1-checkout/include/LibraryFormat.hpp salmon-0.13.1-checkout/include/LibraryTypeDetector.hpp salmon-0.13.1-checkout/include/LightweightAlignmentDefs.hpp salmon-0.13.1-checkout/include/MappingStatistics.hpp salmon-0.13.1-checkout/include/MicroOpts.hpp salmon-0.13.1-checkout/include/MiniBatchInfo.hpp salmon-0.13.1-checkout/include/MultinomialSampler.hpp salmon-0.13.1-checkout/include/NullFragmentFilter.hpp salmon-0.13.1-checkout/include/OutputUnmappedFilter.hpp salmon-0.13.1-checkout/include/PCA.hpp salmon-0.13.1-checkout/include/ProgramOptionsGenerator.hpp salmon-0.13.1-checkout/include/ReadExperiment.hpp salmon-0.13.1-checkout/include/ReadKmerDist.hpp salmon-0.13.1-checkout/include/ReadLibrary.hpp salmon-0.13.1-checkout/include/ReadPair.hpp salmon-0.13.1-checkout/include/ReadProducer.hpp salmon-0.13.1-checkout/include/SBModel.hpp salmon-0.13.1-checkout/include/SGSmooth.hpp salmon-0.13.1-checkout/include/SalmonConfig.hpp salmon-0.13.1-checkout/include/SalmonDefaults.hpp salmon-0.13.1-checkout/include/SalmonExceptions.hpp salmon-0.13.1-checkout/include/SalmonIndex.hpp salmon-0.13.1-checkout/include/SalmonIndexVersionInfo.hpp salmon-0.13.1-checkout/include/SalmonMath.hpp salmon-0.13.1-checkout/include/SalmonOpts.hpp salmon-0.13.1-checkout/include/SalmonSpinLock.hpp salmon-0.13.1-checkout/include/SalmonStringUtils.hpp salmon-0.13.1-checkout/include/SalmonUtils.hpp salmon-0.13.1-checkout/include/Sampler.hpp salmon-0.13.1-checkout/include/SequenceBiasModel.hpp salmon-0.13.1-checkout/include/SimplePosBias.hpp salmon-0.13.1-checkout/include/SingleCellProtocols.hpp salmon-0.13.1-checkout/include/StadenUtils.hpp salmon-0.13.1-checkout/include/SufficientStatisticsQueue.hpp salmon-0.13.1-checkout/include/TextBootstrapWriter.hpp salmon-0.13.1-checkout/include/Transcript.hpp salmon-0.13.1-checkout/include/TranscriptAlignments.hpp salmon-0.13.1-checkout/include/TranscriptCluster.hpp salmon-0.13.1-checkout/include/TranscriptGeneMap.hpp salmon-0.13.1-checkout/include/TranscriptGroup.hpp salmon-0.13.1-checkout/include/TryableSpinLock.hpp salmon-0.13.1-checkout/include/UnpairedRead.hpp salmon-0.13.1-checkout/include/UtilityFunctions.hpp salmon-0.13.1-checkout/include/VersionChecker.hpp salmon-0.13.1-checkout/include/WhiteList.hpp salmon-0.13.1-checkout/include/atomicops.h salmon-0.13.1-checkout/include/blockingconcurrentqueue.h salmon-0.13.1-checkout/include/concurrentqueue.h salmon-0.13.1-checkout/include/core/ salmon-0.13.1-checkout/include/core/algorithm.hpp salmon-0.13.1-checkout/include/core/any.hpp salmon-0.13.1-checkout/include/core/array.hpp salmon-0.13.1-checkout/include/core/deque.hpp salmon-0.13.1-checkout/include/core/forward_list.hpp salmon-0.13.1-checkout/include/core/functional.hpp salmon-0.13.1-checkout/include/core/internal.hpp salmon-0.13.1-checkout/include/core/iterator.hpp salmon-0.13.1-checkout/include/core/list.hpp salmon-0.13.1-checkout/include/core/map.hpp salmon-0.13.1-checkout/include/core/memory.hpp salmon-0.13.1-checkout/include/core/memory_resource.hpp salmon-0.13.1-checkout/include/core/meta.hpp salmon-0.13.1-checkout/include/core/numeric.hpp salmon-0.13.1-checkout/include/core/optional.hpp salmon-0.13.1-checkout/include/core/propagate_const.hpp salmon-0.13.1-checkout/include/core/range.hpp salmon-0.13.1-checkout/include/core/regex.hpp salmon-0.13.1-checkout/include/core/set.hpp salmon-0.13.1-checkout/include/core/string.hpp salmon-0.13.1-checkout/include/core/string_view.hpp salmon-0.13.1-checkout/include/core/type_traits.hpp salmon-0.13.1-checkout/include/core/typeinfo.hpp salmon-0.13.1-checkout/include/core/unordered_map.hpp salmon-0.13.1-checkout/include/core/unordered_set.hpp salmon-0.13.1-checkout/include/core/utility.hpp salmon-0.13.1-checkout/include/core/variant.hpp salmon-0.13.1-checkout/include/core/vector.hpp salmon-0.13.1-checkout/include/cuckoohash_config.hh salmon-0.13.1-checkout/include/cuckoohash_map.hh salmon-0.13.1-checkout/include/cuckoohash_util.hh salmon-0.13.1-checkout/include/default_hasher.hh salmon-0.13.1-checkout/include/edlib.h salmon-0.13.1-checkout/include/ezETAProgressBar.hpp salmon-0.13.1-checkout/include/fastapprox.h salmon-0.13.1-checkout/include/format.h salmon-0.13.1-checkout/include/jellyfish/ salmon-0.13.1-checkout/include/jellyfish/int128.hpp salmon-0.13.1-checkout/include/jellyfish/mer_dna.hpp salmon-0.13.1-checkout/include/jellyfish/misc.hpp salmon-0.13.1-checkout/include/kseq.h salmon-0.13.1-checkout/include/libcuckoo_bucket_container.hh salmon-0.13.1-checkout/include/libcuckoo_lazy_array.hh salmon-0.13.1-checkout/include/make_unique.hpp salmon-0.13.1-checkout/include/nonstd/ salmon-0.13.1-checkout/include/nonstd/optional.hpp salmon-0.13.1-checkout/include/nonstd/string_view.hpp salmon-0.13.1-checkout/include/pcg_extras.hpp salmon-0.13.1-checkout/include/pcg_random.hpp salmon-0.13.1-checkout/include/posix.h salmon-0.13.1-checkout/include/readerwriterqueue.h salmon-0.13.1-checkout/include/spdlog/ salmon-0.13.1-checkout/include/spdlog/async_logger.h salmon-0.13.1-checkout/include/spdlog/common.h salmon-0.13.1-checkout/include/spdlog/details/ salmon-0.13.1-checkout/include/spdlog/details/async_log_helper.h salmon-0.13.1-checkout/include/spdlog/details/async_logger_impl.h salmon-0.13.1-checkout/include/spdlog/details/file_helper.h salmon-0.13.1-checkout/include/spdlog/details/log_msg.h salmon-0.13.1-checkout/include/spdlog/details/logger_impl.h salmon-0.13.1-checkout/include/spdlog/details/mpmc_bounded_q.h salmon-0.13.1-checkout/include/spdlog/details/null_mutex.h salmon-0.13.1-checkout/include/spdlog/details/os.h salmon-0.13.1-checkout/include/spdlog/details/pattern_formatter_impl.h salmon-0.13.1-checkout/include/spdlog/details/registry.h salmon-0.13.1-checkout/include/spdlog/details/spdlog_impl.h salmon-0.13.1-checkout/include/spdlog/fmt/ salmon-0.13.1-checkout/include/spdlog/fmt/bundled/ salmon-0.13.1-checkout/include/spdlog/fmt/bundled/container.h salmon-0.13.1-checkout/include/spdlog/fmt/bundled/format.cc salmon-0.13.1-checkout/include/spdlog/fmt/bundled/format.h salmon-0.13.1-checkout/include/spdlog/fmt/bundled/ostream.cc salmon-0.13.1-checkout/include/spdlog/fmt/bundled/ostream.h salmon-0.13.1-checkout/include/spdlog/fmt/bundled/posix.cc salmon-0.13.1-checkout/include/spdlog/fmt/bundled/posix.h salmon-0.13.1-checkout/include/spdlog/fmt/bundled/printf.cc salmon-0.13.1-checkout/include/spdlog/fmt/bundled/printf.h salmon-0.13.1-checkout/include/spdlog/fmt/bundled/string.h salmon-0.13.1-checkout/include/spdlog/fmt/bundled/time.h salmon-0.13.1-checkout/include/spdlog/fmt/fmt.h salmon-0.13.1-checkout/include/spdlog/fmt/ostr.h salmon-0.13.1-checkout/include/spdlog/formatter.h salmon-0.13.1-checkout/include/spdlog/logger.h salmon-0.13.1-checkout/include/spdlog/sinks/ salmon-0.13.1-checkout/include/spdlog/sinks/android_sink.h salmon-0.13.1-checkout/include/spdlog/sinks/ansicolor_sink.h salmon-0.13.1-checkout/include/spdlog/sinks/base_sink.h salmon-0.13.1-checkout/include/spdlog/sinks/dist_sink.h salmon-0.13.1-checkout/include/spdlog/sinks/file_sinks.h salmon-0.13.1-checkout/include/spdlog/sinks/msvc_sink.h salmon-0.13.1-checkout/include/spdlog/sinks/null_sink.h salmon-0.13.1-checkout/include/spdlog/sinks/ostream_sink.h salmon-0.13.1-checkout/include/spdlog/sinks/sink.h salmon-0.13.1-checkout/include/spdlog/sinks/stdout_sinks.h salmon-0.13.1-checkout/include/spdlog/sinks/syslog_sink.h salmon-0.13.1-checkout/include/spdlog/sinks/wincolor_sink.h salmon-0.13.1-checkout/include/spdlog/sinks/windebug_sink.h salmon-0.13.1-checkout/include/spdlog/spdlog.h salmon-0.13.1-checkout/include/spdlog/tweakme.h salmon-0.13.1-checkout/include/spline.h salmon-0.13.1-checkout/include/stx/ salmon-0.13.1-checkout/include/stx/any.hpp salmon-0.13.1-checkout/include/stx/optional.hpp salmon-0.13.1-checkout/include/stx/string_view.hpp salmon-0.13.1-checkout/include/stx/variant.hpp salmon-0.13.1-checkout/include/xxhash.h salmon-0.13.1-checkout/sample_data.tgz salmon-0.13.1-checkout/scripts/ salmon-0.13.1-checkout/scripts/AddHeaders.sh salmon-0.13.1-checkout/scripts/ComputeMutationRate.py salmon-0.13.1-checkout/scripts/ConvertBootstrapsToTSV.py salmon-0.13.1-checkout/scripts/Dockerfile salmon-0.13.1-checkout/scripts/MutateReference.py salmon-0.13.1-checkout/scripts/build_docker_binary.sh salmon-0.13.1-checkout/scripts/bump_version.sh salmon-0.13.1-checkout/scripts/check_shasum.sh salmon-0.13.1-checkout/scripts/compile.sh salmon-0.13.1-checkout/scripts/cpld.bash salmon-0.13.1-checkout/scripts/fetchRapMap.sh salmon-0.13.1-checkout/scripts/lint.sh salmon-0.13.1-checkout/scripts/make-release.sh salmon-0.13.1-checkout/scripts/merge_into_develop.sh salmon-0.13.1-checkout/scripts/push-binary.sh salmon-0.13.1-checkout/scripts/runner.sh salmon-0.13.1-checkout/scripts/test_sim_corr.py salmon-0.13.1-checkout/scripts/v1_10x/ salmon-0.13.1-checkout/scripts/v1_10x/run.sh salmon-0.13.1-checkout/scripts/v1_10x/wrapper.cpp salmon-0.13.1-checkout/src/ salmon-0.13.1-checkout/src/Alevin.cpp salmon-0.13.1-checkout/src/AlevinHash.cpp salmon-0.13.1-checkout/src/AlevinUtils.cpp salmon-0.13.1-checkout/src/AlignmentModel.cpp salmon-0.13.1-checkout/src/BAMUtils.cpp salmon-0.13.1-checkout/src/BWAUtils.cpp salmon-0.13.1-checkout/src/BuildSalmonIndex.cpp salmon-0.13.1-checkout/src/CMakeLists.txt salmon-0.13.1-checkout/src/CollapsedCellOptimizer.cpp salmon-0.13.1-checkout/src/CollapsedEMOptimizer.cpp salmon-0.13.1-checkout/src/CollapsedGibbsSampler.cpp salmon-0.13.1-checkout/src/DedupUMI.cpp salmon-0.13.1-checkout/src/DistributionUtils.cpp salmon-0.13.1-checkout/src/EMUtils.cpp salmon-0.13.1-checkout/src/EffectiveLengthStats.cpp salmon-0.13.1-checkout/src/FASTAParser.cpp salmon-0.13.1-checkout/src/FastxParser.cpp salmon-0.13.1-checkout/src/FragmentLengthDistribution.cpp salmon-0.13.1-checkout/src/FragmentList.cpp salmon-0.13.1-checkout/src/FragmentStartPositionDistribution.cpp salmon-0.13.1-checkout/src/GZipWriter.cpp salmon-0.13.1-checkout/src/GenomicFeature.cpp salmon-0.13.1-checkout/src/Graph.cpp salmon-0.13.1-checkout/src/LibraryFormat.cpp salmon-0.13.1-checkout/src/PCA.cpp salmon-0.13.1-checkout/src/PCAUtils.cpp salmon-0.13.1-checkout/src/ProgramOptionsGenerator.cpp salmon-0.13.1-checkout/src/SBModel.cpp salmon-0.13.1-checkout/src/SGSmooth.cpp salmon-0.13.1-checkout/src/Salmon.cpp salmon-0.13.1-checkout/src/SalmonAlevin.cpp salmon-0.13.1-checkout/src/SalmonExceptions.cpp salmon-0.13.1-checkout/src/SalmonQuantMerge.cpp salmon-0.13.1-checkout/src/SalmonQuantify.cpp salmon-0.13.1-checkout/src/SalmonQuantifyAlignments.cpp salmon-0.13.1-checkout/src/SalmonStringUtils.cpp salmon-0.13.1-checkout/src/SalmonUtils.cpp salmon-0.13.1-checkout/src/SequenceBiasModel.cpp salmon-0.13.1-checkout/src/SimplePosBias.cpp salmon-0.13.1-checkout/src/StadenUtils.cpp salmon-0.13.1-checkout/src/TestUtils.cpp salmon-0.13.1-checkout/src/TranscriptGroup.cpp salmon-0.13.1-checkout/src/VersionChecker.cpp salmon-0.13.1-checkout/src/WhiteList.cpp salmon-0.13.1-checkout/src/edlib.cpp salmon-0.13.1-checkout/src/jellyfish/ salmon-0.13.1-checkout/src/jellyfish/mer_dna.cc salmon-0.13.1-checkout/src/posix.cc salmon-0.13.1-checkout/src/xxhash.c salmon-0.13.1-checkout/tests/ salmon-0.13.1-checkout/tests/GCSampleTests.cpp salmon-0.13.1-checkout/tests/KmerHistTests.cpp salmon-0.13.1-checkout/tests/LibraryTypeTests.cpp salmon-0.13.1-checkout/tests/README.md salmon-0.13.1-checkout/tests/UnitTests.cpp salmon-0.13.1-checkout/tests/alevin_test_data.tar.gz salmon-0.13.1-checkout/tests/basic_alevin_test.sh salmon-0.13.1-checkout/tests/catch.hpp salmon-0.13.1-checkout/tests/test_quant.nf phase `unpack' succeeded after 0.8 seconds starting phase `fix-tests' phase `fix-tests' succeeded after 0.0 seconds starting phase `use-system-libraries' phase `use-system-libraries' succeeded after 0.0 seconds starting phase `prepare-rapmap' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/CMakeLists.txt' -> `external/install/src/rapmap//CMakeLists.txt' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/EnumCoder.cpp' -> `external/install/src/rapmap//EnumCoder.cpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/EnumCoderTest.cpp' -> `external/install/src/rapmap//EnumCoderTest.cpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/FastxParser.cpp' -> `external/install/src/rapmap//FastxParser.cpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/HitManager.cpp' -> `external/install/src/rapmap//HitManager.cpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/RapMap.cpp' -> `external/install/src/rapmap//RapMap.cpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/RapMapFileSystem.cpp' -> `external/install/src/rapmap//RapMapFileSystem.cpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/RapMapIndex.cpp' -> `external/install/src/rapmap//RapMapIndex.cpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/RapMapIndexer.cpp' -> `external/install/src/rapmap//RapMapIndexer.cpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/RapMapMapper.cpp' -> `external/install/src/rapmap//RapMapMapper.cpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/RapMapSAIndex.cpp' -> `external/install/src/rapmap//RapMapSAIndex.cpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/RapMapSAIndexer.cpp' -> `external/install/src/rapmap//RapMapSAIndexer.cpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/RapMapSAMapper.cpp' -> `external/install/src/rapmap//RapMapSAMapper.cpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/RapMapUtils.cpp' -> `external/install/src/rapmap//RapMapUtils.cpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/UtilTest.cpp' -> `external/install/src/rapmap//UtilTest.cpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/bit_array.c' -> `external/install/src/rapmap//bit_array.c' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/edlib.cpp' -> `external/install/src/rapmap//edlib.cpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/rank9b.cpp' -> `external/install/src/rapmap//rank9b.cpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/stringpiece.cc' -> `external/install/src/rapmap//stringpiece.cc' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/xxhash.c' -> `external/install/src/rapmap//xxhash.c' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/metro/metrohash128.cpp' -> `external/install/src/rapmap//metro/metrohash128.cpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/metro/metrohash128crc.cpp' -> `external/install/src/rapmap//metro/metrohash128crc.cpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/metro/metrohash64.cpp' -> `external/install/src/rapmap//metro/metrohash64.cpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/ksw2pp/KSW2Aligner.cpp' -> `external/install/src/rapmap//ksw2pp/KSW2Aligner.cpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/ksw2pp/kalloc.c' -> `external/install/src/rapmap//ksw2pp/kalloc.c' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/ksw2pp/ksw2_dispatch.c' -> `external/install/src/rapmap//ksw2pp/ksw2_dispatch.c' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/ksw2pp/ksw2_extd.c' -> `external/install/src/rapmap//ksw2pp/ksw2_extd.c' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/ksw2pp/ksw2_extd2_sse.c' -> `external/install/src/rapmap//ksw2pp/ksw2_extd2_sse.c' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/ksw2pp/ksw2_extf2_sse.c' -> `external/install/src/rapmap//ksw2pp/ksw2_extf2_sse.c' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/ksw2pp/ksw2_exts2_sse.c' -> `external/install/src/rapmap//ksw2pp/ksw2_exts2_sse.c' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/ksw2pp/ksw2_extz.c' -> `external/install/src/rapmap//ksw2pp/ksw2_extz.c' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/ksw2pp/ksw2_extz2_sse.c' -> `external/install/src/rapmap//ksw2pp/ksw2_extz2_sse.c' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/ksw2pp/ksw2_gg.c' -> `external/install/src/rapmap//ksw2pp/ksw2_gg.c' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/ksw2pp/ksw2_gg2.c' -> `external/install/src/rapmap//ksw2pp/ksw2_gg2.c' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/src/ksw2pp/ksw2_gg2_sse.c' -> `external/install/src/rapmap//ksw2pp/ksw2_gg2_sse.c' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/BooMap.hpp' -> `external/install/include/rapmap//BooMap.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/BooPHF.hpp' -> `external/install/include/rapmap//BooPHF.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/Const.hpp' -> `external/install/include/rapmap//Const.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/EnumCoder.hpp' -> `external/install/include/rapmap//EnumCoder.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/FastxParser.hpp' -> `external/install/include/rapmap//FastxParser.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/FastxParserThreadUtils.hpp' -> `external/install/include/rapmap//FastxParserThreadUtils.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/FrugalBooMap.hpp' -> `external/install/include/rapmap//FrugalBooMap.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/HitManager.hpp' -> `external/install/include/rapmap//HitManager.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/IndexHeader.hpp' -> `external/install/include/rapmap//IndexHeader.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/JFRaw.hpp' -> `external/install/include/rapmap//JFRaw.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/Kmer.hpp' -> `external/install/include/rapmap//Kmer.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/PairAlignmentFormatter.hpp' -> `external/install/include/rapmap//PairAlignmentFormatter.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/PairSequenceParser.hpp' -> `external/install/include/rapmap//PairSequenceParser.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/RapMapConfig.hpp' -> `external/install/include/rapmap//RapMapConfig.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/RapMapFileSystem.hpp' -> `external/install/include/rapmap//RapMapFileSystem.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/RapMapIndex.hpp' -> `external/install/include/rapmap//RapMapIndex.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/RapMapSAIndex.hpp' -> `external/install/include/rapmap//RapMapSAIndex.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/RapMapUtils.hpp' -> `external/install/include/rapmap//RapMapUtils.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/SACollector.hpp' -> `external/install/include/rapmap//SACollector.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/SASearcher.hpp' -> `external/install/include/rapmap//SASearcher.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/ScopedTimer.hpp' -> `external/install/include/rapmap//ScopedTimer.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/SelectiveAlignmentUtils.hpp' -> `external/install/include/rapmap//SelectiveAlignmentUtils.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/SingleAlignmentFormatter.hpp' -> `external/install/include/rapmap//SingleAlignmentFormatter.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/SparseHashSerializer.hpp' -> `external/install/include/rapmap//SparseHashSerializer.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/SpinLock.hpp' -> `external/install/include/rapmap//SpinLock.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/Type.hpp' -> `external/install/include/rapmap//Type.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/Util.hpp' -> `external/install/include/rapmap//Util.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/bar.h' -> `external/install/include/rapmap//bar.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/bit_array.h' -> `external/install/include/rapmap//bit_array.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/bit_macros.h' -> `external/install/include/rapmap//bit_macros.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/concurrentqueue.h' -> `external/install/include/rapmap//concurrentqueue.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/edlib.h' -> `external/install/include/rapmap//edlib.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/kseq.h' -> `external/install/include/rapmap//kseq.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/macros.h' -> `external/install/include/rapmap//macros.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/picosha2.h' -> `external/install/include/rapmap//picosha2.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/rank9b.h' -> `external/install/include/rapmap//rank9b.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/stringpiece.h' -> `external/install/include/rapmap//stringpiece.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/xxhash.h' -> `external/install/include/rapmap//xxhash.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/zstr/strict_fstream.hpp' -> `external/install/include/rapmap//zstr/strict_fstream.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/zstr/zstr.hpp' -> `external/install/include/rapmap//zstr/zstr.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tsl/array_growth_policy.h' -> `external/install/include/rapmap//tsl/array_growth_policy.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tsl/array_hash.h' -> `external/install/include/rapmap//tsl/array_hash.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tsl/array_map.h' -> `external/install/include/rapmap//tsl/array_map.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tsl/array_set.h' -> `external/install/include/rapmap//tsl/array_set.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tsl/robin_growth_policy.h' -> `external/install/include/rapmap//tsl/robin_growth_policy.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tsl/robin_hash.h' -> `external/install/include/rapmap//tsl/robin_hash.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tsl/robin_map.h' -> `external/install/include/rapmap//tsl/robin_map.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tsl/robin_set.h' -> `external/install/include/rapmap//tsl/robin_set.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tsl/bhopscotch_map.h' -> `external/install/include/rapmap//tsl/bhopscotch_map.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tsl/bhopscotch_set.h' -> `external/install/include/rapmap//tsl/bhopscotch_set.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tsl/hopscotch_growth_policy.h' -> `external/install/include/rapmap//tsl/hopscotch_growth_policy.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tsl/hopscotch_hash.h' -> `external/install/include/rapmap//tsl/hopscotch_hash.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tsl/hopscotch_map.h' -> `external/install/include/rapmap//tsl/hopscotch_map.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tsl/hopscotch_set.h' -> `external/install/include/rapmap//tsl/hopscotch_set.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tclap/Arg.h' -> `external/install/include/rapmap//tclap/Arg.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tclap/ArgException.h' -> `external/install/include/rapmap//tclap/ArgException.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tclap/ArgTraits.h' -> `external/install/include/rapmap//tclap/ArgTraits.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tclap/CmdLine.h' -> `external/install/include/rapmap//tclap/CmdLine.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tclap/CmdLineInterface.h' -> `external/install/include/rapmap//tclap/CmdLineInterface.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tclap/CmdLineOutput.h' -> `external/install/include/rapmap//tclap/CmdLineOutput.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tclap/Constraint.h' -> `external/install/include/rapmap//tclap/Constraint.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tclap/DocBookOutput.h' -> `external/install/include/rapmap//tclap/DocBookOutput.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tclap/HelpVisitor.h' -> `external/install/include/rapmap//tclap/HelpVisitor.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tclap/IgnoreRestVisitor.h' -> `external/install/include/rapmap//tclap/IgnoreRestVisitor.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tclap/Makefile.am' -> `external/install/include/rapmap//tclap/Makefile.am' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tclap/Makefile.in' -> `external/install/include/rapmap//tclap/Makefile.in' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tclap/MultiArg.h' -> `external/install/include/rapmap//tclap/MultiArg.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tclap/MultiSwitchArg.h' -> `external/install/include/rapmap//tclap/MultiSwitchArg.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tclap/OptionalUnlabeledTracker.h' -> `external/install/include/rapmap//tclap/OptionalUnlabeledTracker.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tclap/StandardTraits.h' -> `external/install/include/rapmap//tclap/StandardTraits.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tclap/StdOutput.h' -> `external/install/include/rapmap//tclap/StdOutput.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tclap/SwitchArg.h' -> `external/install/include/rapmap//tclap/SwitchArg.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tclap/UnlabeledMultiArg.h' -> `external/install/include/rapmap//tclap/UnlabeledMultiArg.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tclap/UnlabeledValueArg.h' -> `external/install/include/rapmap//tclap/UnlabeledValueArg.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tclap/ValueArg.h' -> `external/install/include/rapmap//tclap/ValueArg.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tclap/ValuesConstraint.h' -> `external/install/include/rapmap//tclap/ValuesConstraint.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tclap/VersionVisitor.h' -> `external/install/include/rapmap//tclap/VersionVisitor.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tclap/Visitor.h' -> `external/install/include/rapmap//tclap/Visitor.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tclap/XorHandler.h' -> `external/install/include/rapmap//tclap/XorHandler.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/tclap/ZshCompletionOutput.h' -> `external/install/include/rapmap//tclap/ZshCompletionOutput.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/async_logger.h' -> `external/install/include/rapmap//spdlog/async_logger.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/common.h' -> `external/install/include/rapmap//spdlog/common.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/formatter.h' -> `external/install/include/rapmap//spdlog/formatter.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/logger.h' -> `external/install/include/rapmap//spdlog/logger.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/spdlog.h' -> `external/install/include/rapmap//spdlog/spdlog.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/tweakme.h' -> `external/install/include/rapmap//spdlog/tweakme.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/sinks/android_sink.h' -> `external/install/include/rapmap//spdlog/sinks/android_sink.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/sinks/ansicolor_sink.h' -> `external/install/include/rapmap//spdlog/sinks/ansicolor_sink.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/sinks/base_sink.h' -> `external/install/include/rapmap//spdlog/sinks/base_sink.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/sinks/dist_sink.h' -> `external/install/include/rapmap//spdlog/sinks/dist_sink.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/sinks/file_sinks.h' -> `external/install/include/rapmap//spdlog/sinks/file_sinks.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/sinks/msvc_sink.h' -> `external/install/include/rapmap//spdlog/sinks/msvc_sink.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/sinks/null_sink.h' -> `external/install/include/rapmap//spdlog/sinks/null_sink.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/sinks/ostream_sink.h' -> `external/install/include/rapmap//spdlog/sinks/ostream_sink.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/sinks/sink.h' -> `external/install/include/rapmap//spdlog/sinks/sink.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/sinks/stdout_sinks.h' -> `external/install/include/rapmap//spdlog/sinks/stdout_sinks.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/sinks/syslog_sink.h' -> `external/install/include/rapmap//spdlog/sinks/syslog_sink.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/sinks/wincolor_sink.h' -> `external/install/include/rapmap//spdlog/sinks/wincolor_sink.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/sinks/windebug_sink.h' -> `external/install/include/rapmap//spdlog/sinks/windebug_sink.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/fmt/fmt.h' -> `external/install/include/rapmap//spdlog/fmt/fmt.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/fmt/ostr.h' -> `external/install/include/rapmap//spdlog/fmt/ostr.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/fmt/bundled/container.h' -> `external/install/include/rapmap//spdlog/fmt/bundled/container.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/fmt/bundled/format.cc' -> `external/install/include/rapmap//spdlog/fmt/bundled/format.cc' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/fmt/bundled/format.h' -> `external/install/include/rapmap//spdlog/fmt/bundled/format.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/fmt/bundled/ostream.h' -> `external/install/include/rapmap//spdlog/fmt/bundled/ostream.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/fmt/bundled/printf.cc' -> `external/install/include/rapmap//spdlog/fmt/bundled/printf.cc' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/fmt/bundled/printf.h' -> `external/install/include/rapmap//spdlog/fmt/bundled/printf.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/fmt/bundled/string.h' -> `external/install/include/rapmap//spdlog/fmt/bundled/string.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/fmt/bundled/ostream.cc' -> `external/install/include/rapmap//spdlog/fmt/bundled/ostream.cc' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/fmt/bundled/posix.cc' -> `external/install/include/rapmap//spdlog/fmt/bundled/posix.cc' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/fmt/bundled/posix.h' -> `external/install/include/rapmap//spdlog/fmt/bundled/posix.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/fmt/bundled/time.h' -> `external/install/include/rapmap//spdlog/fmt/bundled/time.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/details/async_log_helper.h' -> `external/install/include/rapmap//spdlog/details/async_log_helper.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/details/async_logger_impl.h' -> `external/install/include/rapmap//spdlog/details/async_logger_impl.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/details/file_helper.h' -> `external/install/include/rapmap//spdlog/details/file_helper.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/details/log_msg.h' -> `external/install/include/rapmap//spdlog/details/log_msg.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/details/logger_impl.h' -> `external/install/include/rapmap//spdlog/details/logger_impl.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/details/mpmc_bounded_q.h' -> `external/install/include/rapmap//spdlog/details/mpmc_bounded_q.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/details/os.h' -> `external/install/include/rapmap//spdlog/details/os.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/details/pattern_formatter_impl.h' -> `external/install/include/rapmap//spdlog/details/pattern_formatter_impl.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/details/registry.h' -> `external/install/include/rapmap//spdlog/details/registry.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/details/spdlog_impl.h' -> `external/install/include/rapmap//spdlog/details/spdlog_impl.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/spdlog/details/null_mutex.h' -> `external/install/include/rapmap//spdlog/details/null_mutex.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/sparsepp/spp.h' -> `external/install/include/rapmap//sparsepp/spp.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/sparsepp/spp_dlalloc.h' -> `external/install/include/rapmap//sparsepp/spp_dlalloc.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/sparsepp/spp_memory.h' -> `external/install/include/rapmap//sparsepp/spp_memory.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/sparsepp/spp_traits.h' -> `external/install/include/rapmap//sparsepp/spp_traits.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/sparsepp/spp_utils.h' -> `external/install/include/rapmap//sparsepp/spp_utils.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/sparsepp/spp_config.h' -> `external/install/include/rapmap//sparsepp/spp_config.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/sparsepp/spp_smartptr.h' -> `external/install/include/rapmap//sparsepp/spp_smartptr.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/sparsepp/spp_stdint.h' -> `external/install/include/rapmap//sparsepp/spp_stdint.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/sparsepp/spp_timer.h' -> `external/install/include/rapmap//sparsepp/spp_timer.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/nonstd/optional.hpp' -> `external/install/include/rapmap//nonstd/optional.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/nonstd/string_view.hpp' -> `external/install/include/rapmap//nonstd/string_view.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/metro/metrohash.h' -> `external/install/include/rapmap//metro/metrohash.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/metro/metrohash128.h' -> `external/install/include/rapmap//metro/metrohash128.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/metro/metrohash128crc.h' -> `external/install/include/rapmap//metro/metrohash128crc.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/metro/metrohash64.h' -> `external/install/include/rapmap//metro/metrohash64.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/metro/platform.h' -> `external/install/include/rapmap//metro/platform.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/metro/testvector.h' -> `external/install/include/rapmap//metro/testvector.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/ksw2pp/KSW2Aligner.hpp' -> `external/install/include/rapmap//ksw2pp/KSW2Aligner.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/ksw2pp/kalloc.h' -> `external/install/include/rapmap//ksw2pp/kalloc.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/ksw2pp/ksw2.h' -> `external/install/include/rapmap//ksw2pp/ksw2.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/digestpp.hpp' -> `external/install/include/rapmap//digestpp/digestpp.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/hasher.hpp' -> `external/install/include/rapmap//digestpp/hasher.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/detail/absorb_data.hpp' -> `external/install/include/rapmap//digestpp/detail/absorb_data.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/detail/functions.hpp' -> `external/install/include/rapmap//digestpp/detail/functions.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/detail/stream_width_fixer.hpp' -> `external/install/include/rapmap//digestpp/detail/stream_width_fixer.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/detail/traits.hpp' -> `external/install/include/rapmap//digestpp/detail/traits.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/detail/validate_hash_size.hpp' -> `external/install/include/rapmap//digestpp/detail/validate_hash_size.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/blake.hpp' -> `external/install/include/rapmap//digestpp/algorithm/blake.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/blake2.hpp' -> `external/install/include/rapmap//digestpp/algorithm/blake2.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/groestl.hpp' -> `external/install/include/rapmap//digestpp/algorithm/groestl.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/jh.hpp' -> `external/install/include/rapmap//digestpp/algorithm/jh.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/k12m14.hpp' -> `external/install/include/rapmap//digestpp/algorithm/k12m14.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/kmac.hpp' -> `external/install/include/rapmap//digestpp/algorithm/kmac.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/kupyna.hpp' -> `external/install/include/rapmap//digestpp/algorithm/kupyna.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/md5.hpp' -> `external/install/include/rapmap//digestpp/algorithm/md5.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/sha1.hpp' -> `external/install/include/rapmap//digestpp/algorithm/sha1.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/sha2.hpp' -> `external/install/include/rapmap//digestpp/algorithm/sha2.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/sha3.hpp' -> `external/install/include/rapmap//digestpp/algorithm/sha3.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/shake.hpp' -> `external/install/include/rapmap//digestpp/algorithm/shake.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/skein.hpp' -> `external/install/include/rapmap//digestpp/algorithm/skein.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/sm3.hpp' -> `external/install/include/rapmap//digestpp/algorithm/sm3.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/streebog.hpp' -> `external/install/include/rapmap//digestpp/algorithm/streebog.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/whirlpool.hpp' -> `external/install/include/rapmap//digestpp/algorithm/whirlpool.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/mixin/blake2_mixin.hpp' -> `external/install/include/rapmap//digestpp/algorithm/mixin/blake2_mixin.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/mixin/blake_mixin.hpp' -> `external/install/include/rapmap//digestpp/algorithm/mixin/blake_mixin.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/mixin/cshake_mixin.hpp' -> `external/install/include/rapmap//digestpp/algorithm/mixin/cshake_mixin.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/mixin/k12m14_mixin.hpp' -> `external/install/include/rapmap//digestpp/algorithm/mixin/k12m14_mixin.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/mixin/kmac_mixin.hpp' -> `external/install/include/rapmap//digestpp/algorithm/mixin/kmac_mixin.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/mixin/null_mixin.hpp' -> `external/install/include/rapmap//digestpp/algorithm/mixin/null_mixin.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/mixin/skein_mixin.hpp' -> `external/install/include/rapmap//digestpp/algorithm/mixin/skein_mixin.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/blake2_provider.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/blake2_provider.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/blake_provider.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/blake_provider.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/groestl_provider.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/groestl_provider.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/jh_provider.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/jh_provider.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/k12m14_provider.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/k12m14_provider.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/kmac_provider.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/kmac_provider.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/kupyna_provider.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/kupyna_provider.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/md5_provider.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/md5_provider.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/sha1_provider.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/sha1_provider.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/sha2_provider.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/sha2_provider.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/sha3_provider.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/sha3_provider.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/shake_provider.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/shake_provider.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/skein_provider.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/skein_provider.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/sm3_provider.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/sm3_provider.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/streebog_provider.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/streebog_provider.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/whirlpool_provider.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/whirlpool_provider.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/constants/blake2_constants.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/constants/blake2_constants.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/constants/blake_constants.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/constants/blake_constants.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/constants/groestl_constants.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/constants/groestl_constants.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/constants/jh_constants.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/constants/jh_constants.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/constants/kupyna_constants.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/constants/kupyna_constants.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/constants/md5_constants.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/constants/md5_constants.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/constants/sha1_constants.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/constants/sha1_constants.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/constants/sha2_constants.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/constants/sha2_constants.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/constants/sha3_constants.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/constants/sha3_constants.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/constants/skein_constants.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/constants/skein_constants.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/constants/streebog_constants.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/constants/streebog_constants.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/digestpp/algorithm/detail/constants/whirlpool_constants.hpp' -> `external/install/include/rapmap//digestpp/algorithm/detail/constants/whirlpool_constants.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/chobo/small_vector.hpp' -> `external/install/include/rapmap//chobo/small_vector.hpp' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/btree/btree.h' -> `external/install/include/rapmap//btree/btree.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/btree/btree_container.h' -> `external/install/include/rapmap//btree/btree_container.h' `/gnu/store/0bcn3bgr9h0r1vqy34pbd3gy6f5b762x-rapmap-salmon-v0.13.1-checkout/include/btree/btree_map.h' -> `external/install/include/rapmap//btree/btree_map.h' phase `prepare-rapmap' succeeded after 0.0 seconds starting phase `do-not-phone-home' phase `do-not-phone-home' succeeded after 0.0 seconds starting phase `do-not-look-for-boost' phase `do-not-look-for-boost' succeeded after 0.0 seconds starting phase `patch-usr-bin-file' phase `patch-usr-bin-file' succeeded after 0.0 seconds starting phase `patch-source-shebangs' patch-shebang: ./.drone/build.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash' patch-shebang: ./.drone/copy_build.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash' patch-shebang: ./.drone/test_quant.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash' patch-shebang: ./docker/build_test.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash' patch-shebang: ./scripts/AddHeaders.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash' patch-shebang: ./scripts/bump_version.sh: changing `/usr/bin/env bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash' patch-shebang: ./scripts/check_shasum.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash' patch-shebang: ./scripts/compile.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash' patch-shebang: ./scripts/cpld.bash: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash' patch-shebang: ./scripts/fetchRapMap.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash' patch-shebang: ./scripts/lint.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash' patch-shebang: ./scripts/make-release.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash' patch-shebang: ./scripts/merge_into_develop.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash' patch-shebang: ./scripts/runner.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash' patch-shebang: ./scripts/v1_10x/run.sh: changing `/bin/bash' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/bash' patch-shebang: ./tests/test_quant.nf: warning: no binary for interpreter `nextflow' found in $PATH phase `patch-source-shebangs' succeeded after 0.1 seconds starting phase `configure' source directory: "/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout" (relative from build: "../salmon-0.13.1-checkout") build directory: "/tmp/guix-build-salmon-0.13.1.drv-0/build" running 'cmake' with arguments ("../salmon-0.13.1-checkout" "-DCMAKE_BUILD_TYPE=RelWithDebInfo" "-DCMAKE_INSTALL_PREFIX=/gnu/store/cznf4g973kdfambm5h244pigchcqxiwc-salmon-0.13.1" "-DCMAKE_INSTALL_LIBDIR=lib" "-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE" "-DCMAKE_INSTALL_RPATH=/gnu/store/cznf4g973kdfambm5h244pigchcqxiwc-salmon-0.13.1/lib" "-DCMAKE_VERBOSE_MAKEFILE=ON" "-DBOOST_INCLUDEDIR=/gnu/store/kxabg9r2wnb4inc5lvh7r4wxnpj5f8kr-boost-1.72.0/include/" "-DBOOST_LIBRARYDIR=/gnu/store/kxabg9r2wnb4inc5lvh7r4wxnpj5f8kr-boost-1.72.0/lib/" "-DBoost_LIBRARIES=-lboost_iostreams -lboost_filesystem -lboost_system -lboost_thread -lboost_timer -lboost_chrono -lboost_program_options" "-DBoost_FOUND=TRUE" "-DTBB_LIBRARIES=tbb tbbmalloc" "-DFETCHED_RAPMAP=1") CC: gcc CC version: -- The C compiler identification is GNU 7.5.0 -- The CXX compiler identification is GNU 7.5.0 -- Check for working C compiler: /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/gcc -- Check for working C compiler: /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -- Check for working CXX compiler: /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done version: 0.13.1 -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Check if compiler accepts -pthread -- Check if compiler accepts -pthread - yes -- Found Threads: TRUE Making Default build type -- Found ZLIB: /gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/lib/libz.so (found version "1.2.11") -- Looking for lzma_auto_decoder in /gnu/store/r7k859hmcnkazf492fasqvk25jflnfk6-xz-5.2.4/lib/liblzma.so -- Looking for lzma_auto_decoder in /gnu/store/r7k859hmcnkazf492fasqvk25jflnfk6-xz-5.2.4/lib/liblzma.so - found -- Looking for lzma_easy_encoder in /gnu/store/r7k859hmcnkazf492fasqvk25jflnfk6-xz-5.2.4/lib/liblzma.so -- Looking for lzma_easy_encoder in /gnu/store/r7k859hmcnkazf492fasqvk25jflnfk6-xz-5.2.4/lib/liblzma.so - found -- Looking for lzma_lzma_preset in /gnu/store/r7k859hmcnkazf492fasqvk25jflnfk6-xz-5.2.4/lib/liblzma.so -- Looking for lzma_lzma_preset in /gnu/store/r7k859hmcnkazf492fasqvk25jflnfk6-xz-5.2.4/lib/liblzma.so - found -- Found LibLZMA: /gnu/store/r7k859hmcnkazf492fasqvk25jflnfk6-xz-5.2.4/lib/liblzma.so (found version "5.2.4") Found liblzma library: /gnu/store/r7k859hmcnkazf492fasqvk25jflnfk6-xz-5.2.4/lib/liblzma.so =========================================== -- Found BZip2: /gnu/store/a9f7wmc75hbpg520phw9z4l9asm3qvsw-bzip2-1.0.8/lib/libbz2.so (found version "1.0.8") -- Looking for BZ2_bzCompressInit -- Looking for BZ2_bzCompressInit - found Found libbz2 library: /gnu/store/a9f7wmc75hbpg520phw9z4l9asm3qvsw-bzip2-1.0.8/lib/libbz2.so =========================================== BOOST_INCLUDEDIR = /gnu/store/kxabg9r2wnb4inc5lvh7r4wxnpj5f8kr-boost-1.72.0/include/ BOOST_LIBRARYDIR = /gnu/store/kxabg9r2wnb4inc5lvh7r4wxnpj5f8kr-boost-1.72.0/lib/ Boost_FOUND = TRUE BOOST ROOT = BOOST INCLUDE DIR = BOOST INCLUDE DIRS = BOOST LIB DIR = BOOST LIBRARIES = -lboost_iostreams -lboost_filesystem -lboost_system -lboost_thread -lboost_timer -lboost_chrono -lboost_program_options Build system will build libdivsufsort ================================================================== DOWNLOAD_DIR/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/externalURL/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/libdivsufsort.zipSOURCE_DIR/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/libdivsufsort-masterINSTALL_DIR/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/installBINARY_DIR/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/libdivsufsort-master/buildCMAKE_ARGS-DCMAKE_INSTALL_PREFIX:PATH=-DBUILD_DIVSUFSORT64=TRUE-DUSE_OPENMP=TRUE-DBUILD_SHARED_LIBS=FALSE libdivsufsortmakedirCOMMANDmkdir-p/buildCOMMENTMake build directoryDEPENDEESdownloadDEPENDERSconfigure Build system will fetch and build the Cereal serialization library ================================================================== DOWNLOAD_DIR/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/externalDOWNLOAD_COMMANDechocurl-k-Lhttps://github.com/USCiLab/cereal/archive/v1.2.2.tar.gz-ocereal-v1.2.2.tar.gz&&/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/scripts/check_shasum.sh1921f26d2e1daf9132da3c432e2fd02093ecaedf846e65d7679ddf868c7289c4cereal-v1.2.2.tar.gz&&tar-xzvfcereal-v1.2.2.tar.gzSOURCE_DIR/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal-1.2.2INSTALL_DIR/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/installBINARY_DIR/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal-1.2.2/buildCONFIGURE_COMMANDBUILD_COMMANDINSTALL_COMMANDsh-cmkdir -p /include && cp -r /include/cereal /include libcerealmakedirCOMMANDmkdir-p/buildCOMMENTMake build directoryDEPENDEESdownloadDEPENDERSconfigure -- Could NOT find TBB (missing: tbb tbbmalloc tbbmalloc_proxy) (found suitable version "2020.3", minimum required is "2018.0") Build system will fetch and build Intel Threading Building Blocks ================================================================== DOWNLOAD_DIR/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/externalDOWNLOAD_COMMANDechocurl-k-Lhttps://github.com/01org/tbb/archive/2018_U3.tar.gz-otbb-2018_U3.tgz&&/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/scripts/check_shasum.sh23793c8645480148e9559df96b386b780f92194c80120acce79fcdaae0d81f45tbb-2018_U3.tgz&&tar-xzvftbb-2018_U3.tgzSOURCE_DIR/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/tbb-2018_U3INSTALL_DIR/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/installPATCH_COMMANDCONFIGURE_COMMANDBUILD_COMMANDmakeCXXFLAGS= -UDO_ITT_NOTIFY -std=c++14lambdas=1compiler=gcccfg=releasetbb_build_prefix=LIBSINSTALL_COMMANDsh-cmkdir -p /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include && mkdir -p /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/lib && cp /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/tbb-2018_U3/build/LIBS_release/*.so* /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/lib && cp -r /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/tbb-2018_U3/include/* /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/includeBUILD_IN_SOURCE1 libtbbreconfigureCOMMAND/gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout-DTBB_WILL_RECONFIGURE=FALSE-DTBB_RECONFIGURE=TRUEDEPENDEESinstall /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/lib/libtbb.so/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/lib/libtbbmalloc.so TBB_LIBRARIES = /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/lib/libtbbmalloc_proxy.so;/gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/lib/libtbbmalloc.so;/gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/lib/libtbb.so Build system will compile libgff ================================================================== DOWNLOAD_DIR/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/externalDOWNLOAD_COMMANDechocurl-k-Lhttps://github.com/COMBINE-lab/libgff/archive/v1.2.tar.gz-olibgff.tgz&&/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/scripts/check_shasum.shbfabf143da828e8db251104341b934458c19d3e3c592d418d228de42becf98eblibgff.tgz&&tar-xzvflibgff.tgzSOURCE_DIR/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/libgff-1.2INSTALL_DIR/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/installBINARY_DIR/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/libgff-1.2/buildCMAKE_ARGS-DCMAKE_INSTALL_PREFIX:PATH=/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install libgffmakedirCOMMANDmkdir-p/buildCOMMENTMake build directoryDEPENDEESdownloadDEPENDERSconfigure Build system will compile Staden IOLib ================================================================== DOWNLOAD_DIR/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/externalDOWNLOAD_COMMANDechocurl-k-Lhttps://github.com/COMBINE-lab/staden-io_lib/archive/v1.14.8.1.tar.gz-ostaden-io_lib-v1.14.8.tar.gz&&/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/scripts/check_shasum.shf6f30eefa478cfb708f3109a35fb6ffa0e24951d9d971985df2cef5919dd0bc3staden-io_lib-v1.14.8.tar.gz&&mkdir-pstaden-io_lib-1.14.8&&tar-xzfstaden-io_lib-v1.14.8.tar.gz--strip-components=1-Cstaden-io_lib-1.14.8&&rm-frstaden-io_lib&&mv-fstaden-io_lib-1.14.8staden-io_libSOURCE_DIR/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/staden-io_libINSTALL_DIR/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/installCONFIGURE_COMMAND./configure--enable-shared=no--without-libcurl--prefix=LDFLAGS=CFLAGS=CC=/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/gccCXX=/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++BUILD_COMMANDmakeCC=/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/gccCXX=/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++CFLAGS+=CFLAGS+=LDFLAGS+=CFLAGS+=CFLAGS+=BUILD_IN_SOURCE1INSTALL_COMMANDmakeinstall -- Found PkgConfig: /gnu/store/krpyb0zi700dcrg9cc8932w4v0qivdg9-pkg-config-0.29.2/bin/pkg-config (found version "0.29.2") -- Found Jemalloc: /gnu/store/nzygsjdnr69gmqhfchys2dkb8lnra89x-jemalloc-5.2.1/lib/libjemalloc.a (found version "5.2.1-0-gea6b3e973b477b8061e0076bb257dbd7f3faa756") Found Jemalloc library --- using this memory allocator CPACK_SOURCE_IGNORE_FILES = /src/PCA.cpp;/src/PCAUtils.cpp;/build/;/scripts/AggregateToGeneLevel.py;/scripts/ExpressionTools.py;/scripts/GenerateExpressionFiles.sh;/scripts/ParseSoftFile.py;/scripts/PlotCorrelation.py;/scripts/junk;/scripts/sfstrace.log;/scripts/SFPipeline.py;/bin/;/lib/;/sample_data/;PublishREADMEToWebsite.sh;/external/;/src/obsolete/;/include/obsolete/;WebsiteHeader.txt;/experimental_configs/;.git/ TBB_LIBRARIES = /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/lib/libtbbmalloc_proxy.so;/gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/lib/libtbbmalloc.so;/gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/lib/libtbb.so -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_INSTALL_LIBDIR -- Build files have been written to: /tmp/guix-build-salmon-0.13.1.drv-0/build phase `configure' succeeded after 7.4 seconds starting phase `patch-generated-file-shebangs' phase `patch-generated-file-shebangs' succeeded after 0.0 seconds starting phase `build' /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -S/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout -B/tmp/guix-build-salmon-0.13.1.drv-0/build --check-build-system CMakeFiles/Makefile.cmake 0 /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -E cmake_progress_start /tmp/guix-build-salmon-0.13.1.drv-0/build/CMakeFiles /tmp/guix-build-salmon-0.13.1.drv-0/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make -f src/CMakeFiles/ksw2pp_basic.dir/build.make src/CMakeFiles/ksw2pp_basic.dir/depend make -f src/CMakeFiles/ksw2pp_sse4.dir/build.make src/CMakeFiles/ksw2pp_sse4.dir/depend make -f src/CMakeFiles/ksw2pp_sse2.dir/build.make src/CMakeFiles/ksw2pp_sse2.dir/depend make -f src/CMakeFiles/alevin_core.dir/build.make src/CMakeFiles/alevin_core.dir/depend make -f src/CMakeFiles/salmon_core.dir/build.make src/CMakeFiles/salmon_core.dir/depend make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' cd /tmp/guix-build-salmon-0.13.1.drv-0/build && /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src /tmp/guix-build-salmon-0.13.1.drv-0/build /tmp/guix-build-salmon-0.13.1.drv-0/build/src /tmp/guix-build-salmon-0.13.1.drv-0/build/src/CMakeFiles/ksw2pp_basic.dir/DependInfo.cmake --color= make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' cd /tmp/guix-build-salmon-0.13.1.drv-0/build && /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src /tmp/guix-build-salmon-0.13.1.drv-0/build /tmp/guix-build-salmon-0.13.1.drv-0/build/src /tmp/guix-build-salmon-0.13.1.drv-0/build/src/CMakeFiles/ksw2pp_sse4.dir/DependInfo.cmake --color= make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' cd /tmp/guix-build-salmon-0.13.1.drv-0/build && /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src /tmp/guix-build-salmon-0.13.1.drv-0/build /tmp/guix-build-salmon-0.13.1.drv-0/build/src /tmp/guix-build-salmon-0.13.1.drv-0/build/src/CMakeFiles/ksw2pp_sse2.dir/DependInfo.cmake --color= make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' cd /tmp/guix-build-salmon-0.13.1.drv-0/build && /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src /tmp/guix-build-salmon-0.13.1.drv-0/build /tmp/guix-build-salmon-0.13.1.drv-0/build/src /tmp/guix-build-salmon-0.13.1.drv-0/build/src/CMakeFiles/alevin_core.dir/DependInfo.cmake --color= make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' cd /tmp/guix-build-salmon-0.13.1.drv-0/build && /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src /tmp/guix-build-salmon-0.13.1.drv-0/build /tmp/guix-build-salmon-0.13.1.drv-0/build/src /tmp/guix-build-salmon-0.13.1.drv-0/build/src/CMakeFiles/salmon_core.dir/DependInfo.cmake --color= Scanning dependencies of target ksw2pp_sse4 Scanning dependencies of target ksw2pp_sse2 make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make -f src/CMakeFiles/ksw2pp_sse4.dir/build.make src/CMakeFiles/ksw2pp_sse4.dir/build Scanning dependencies of target ksw2pp_basic make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make -f src/CMakeFiles/ksw2pp_sse2.dir/build.make src/CMakeFiles/ksw2pp_sse2.dir/build make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make -f src/CMakeFiles/ksw2pp_basic.dir/build.make src/CMakeFiles/ksw2pp_basic.dir/build make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' [ 1%] Building C object src/CMakeFiles/ksw2pp_sse2.dir/__/external/install/src/rapmap/ksw2pp/ksw2_extd2_sse.c.o [ 4%] Building C object src/CMakeFiles/ksw2pp_sse2.dir/__/external/install/src/rapmap/ksw2pp/ksw2_extf2_sse.c.o [ 4%] Building C object src/CMakeFiles/ksw2pp_basic.dir/__/external/install/src/rapmap/ksw2pp/kalloc.c.o [ 8%] Building C object src/CMakeFiles/ksw2pp_sse4.dir/__/external/install/src/rapmap/ksw2pp/ksw2_extd2_sse.c.o [ 8%] Building C object src/CMakeFiles/ksw2pp_sse4.dir/__/external/install/src/rapmap/ksw2pp/ksw2_extf2_sse.c.o [ 8%] Building C object src/CMakeFiles/ksw2pp_sse2.dir/__/external/install/src/rapmap/ksw2pp/ksw2_extz2_sse.c.o [ 9%] Building C object src/CMakeFiles/ksw2pp_basic.dir/__/external/install/src/rapmap/ksw2pp/ksw2_extd.c.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/gcc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -DKSW_SSE2_ONLY -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -O3 -msse2 -mno-sse4.1 -o CMakeFiles/ksw2pp_sse2.dir/__/external/install/src/rapmap/ksw2pp/ksw2_extd2_sse.c.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/src/rapmap/ksw2pp/ksw2_extd2_sse.c [ 14%] Building C object src/CMakeFiles/ksw2pp_basic.dir/__/external/install/src/rapmap/ksw2pp/ksw2_extz.c.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/gcc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -O2 -g -DNDEBUG -o CMakeFiles/ksw2pp_basic.dir/__/external/install/src/rapmap/ksw2pp/kalloc.c.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/src/rapmap/ksw2pp/kalloc.c [ 14%] Building C object src/CMakeFiles/ksw2pp_basic.dir/__/external/install/src/rapmap/ksw2pp/ksw2_gg.c.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/gcc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -DKSW_SSE2_ONLY -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -O3 -msse2 -mno-sse4.1 -o CMakeFiles/ksw2pp_sse2.dir/__/external/install/src/rapmap/ksw2pp/ksw2_extf2_sse.c.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/src/rapmap/ksw2pp/ksw2_extf2_sse.c [ 14%] Building C object src/CMakeFiles/ksw2pp_sse4.dir/__/external/install/src/rapmap/ksw2pp/ksw2_extz2_sse.c.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/gcc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -O2 -g -DNDEBUG -O3 -msse4.1 -o CMakeFiles/ksw2pp_sse4.dir/__/external/install/src/rapmap/ksw2pp/ksw2_extd2_sse.c.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/src/rapmap/ksw2pp/ksw2_extd2_sse.c cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/gcc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -DKSW_SSE2_ONLY -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -O3 -msse2 -mno-sse4.1 -o CMakeFiles/ksw2pp_sse2.dir/__/external/install/src/rapmap/ksw2pp/ksw2_extz2_sse.c.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/src/rapmap/ksw2pp/ksw2_extz2_sse.c cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/gcc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -O2 -g -DNDEBUG -o CMakeFiles/ksw2pp_basic.dir/__/external/install/src/rapmap/ksw2pp/ksw2_extd.c.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/src/rapmap/ksw2pp/ksw2_extd.c [ 15%] Building C object src/CMakeFiles/ksw2pp_basic.dir/__/external/install/src/rapmap/ksw2pp/ksw2_gg2_sse.c.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/gcc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -O2 -g -DNDEBUG -O3 -msse4.1 -o CMakeFiles/ksw2pp_sse4.dir/__/external/install/src/rapmap/ksw2pp/ksw2_extf2_sse.c.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/src/rapmap/ksw2pp/ksw2_extf2_sse.c cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/gcc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -O2 -g -DNDEBUG -o CMakeFiles/ksw2pp_basic.dir/__/external/install/src/rapmap/ksw2pp/ksw2_extz.c.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/src/rapmap/ksw2pp/ksw2_extz.c cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/gcc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -O2 -g -DNDEBUG -O3 -msse4.1 -o CMakeFiles/ksw2pp_sse4.dir/__/external/install/src/rapmap/ksw2pp/ksw2_extz2_sse.c.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/src/rapmap/ksw2pp/ksw2_extz2_sse.c [ 16%] Building C object src/CMakeFiles/ksw2pp_basic.dir/__/external/install/src/rapmap/ksw2pp/ksw2_gg2.c.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/gcc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -O2 -g -DNDEBUG -o CMakeFiles/ksw2pp_basic.dir/__/external/install/src/rapmap/ksw2pp/ksw2_gg.c.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/src/rapmap/ksw2pp/ksw2_gg.c cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/gcc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -O2 -g -DNDEBUG -o CMakeFiles/ksw2pp_basic.dir/__/external/install/src/rapmap/ksw2pp/ksw2_gg2_sse.c.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/src/rapmap/ksw2pp/ksw2_gg2_sse.c [ 18%] Building CXX object src/CMakeFiles/ksw2pp_basic.dir/__/external/install/src/rapmap/ksw2pp/KSW2Aligner.cpp.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/gcc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -O2 -g -DNDEBUG -o CMakeFiles/ksw2pp_basic.dir/__/external/install/src/rapmap/ksw2pp/ksw2_gg2.c.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/src/rapmap/ksw2pp/ksw2_gg2.c cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -O2 -g -DNDEBUG -std=c++14 -o CMakeFiles/ksw2pp_basic.dir/__/external/install/src/rapmap/ksw2pp/KSW2Aligner.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/src/rapmap/ksw2pp/KSW2Aligner.cpp Scanning dependencies of target alevin_core make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make -f src/CMakeFiles/alevin_core.dir/build.make src/CMakeFiles/alevin_core.dir/build make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' [ 19%] Building CXX object src/CMakeFiles/alevin_core.dir/edlib.cpp.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -std=c++14 -o CMakeFiles/alevin_core.dir/edlib.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/edlib.cpp Scanning dependencies of target salmon_core make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' [ 21%] Building CXX object src/CMakeFiles/alevin_core.dir/AlevinUtils.cpp.o make -f src/CMakeFiles/salmon_core.dir/build.make src/CMakeFiles/salmon_core.dir/build cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -std=c++14 -o CMakeFiles/alevin_core.dir/AlevinUtils.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/AlevinUtils.cpp make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' [ 22%] Building CXX object src/CMakeFiles/salmon_core.dir/jellyfish/mer_dna.cc.o [ 23%] Building C object src/CMakeFiles/salmon_core.dir/xxhash.c.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -std=c++14 -o CMakeFiles/salmon_core.dir/jellyfish/mer_dna.cc.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/jellyfish/mer_dna.cc [ 25%] Building CXX object src/CMakeFiles/salmon_core.dir/EffectiveLengthStats.cpp.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/gcc -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -o CMakeFiles/salmon_core.dir/xxhash.c.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/xxhash.c [ 28%] Building CXX object src/CMakeFiles/salmon_core.dir/TranscriptGroup.cpp.o [ 28%] Building CXX object src/CMakeFiles/salmon_core.dir/LibraryFormat.cpp.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -std=c++14 -o CMakeFiles/salmon_core.dir/EffectiveLengthStats.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/EffectiveLengthStats.cpp [ 29%] Building CXX object src/CMakeFiles/salmon_core.dir/GenomicFeature.cpp.o [ 30%] Building CXX object src/CMakeFiles/salmon_core.dir/VersionChecker.cpp.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -std=c++14 -o CMakeFiles/salmon_core.dir/LibraryFormat.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/LibraryFormat.cpp cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -std=c++14 -o CMakeFiles/salmon_core.dir/GenomicFeature.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/GenomicFeature.cpp cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -std=c++14 -o CMakeFiles/salmon_core.dir/TranscriptGroup.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/TranscriptGroup.cpp [ 32%] Building CXX object src/CMakeFiles/salmon_core.dir/SBModel.cpp.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -std=c++14 -o CMakeFiles/salmon_core.dir/VersionChecker.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/VersionChecker.cpp [ 33%] Building CXX object src/CMakeFiles/salmon_core.dir/FastxParser.cpp.o [ 35%] Building CXX object src/CMakeFiles/salmon_core.dir/StadenUtils.cpp.o [ 36%] Building CXX object src/CMakeFiles/salmon_core.dir/SalmonUtils.cpp.o [ 38%] Building CXX object src/CMakeFiles/salmon_core.dir/DistributionUtils.cpp.o [ 39%] Building CXX object src/CMakeFiles/salmon_core.dir/SalmonExceptions.cpp.o [ 40%] Building CXX object src/CMakeFiles/salmon_core.dir/SalmonStringUtils.cpp.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -std=c++14 -o CMakeFiles/salmon_core.dir/SBModel.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/SBModel.cpp [ 43%] Building CXX object src/CMakeFiles/salmon_core.dir/SimplePosBias.cpp.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -std=c++14 -o CMakeFiles/salmon_core.dir/FastxParser.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/FastxParser.cpp [ 43%] Building CXX object src/CMakeFiles/salmon_core.dir/SGSmooth.cpp.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -std=c++14 -o CMakeFiles/salmon_core.dir/StadenUtils.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/StadenUtils.cpp cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -std=c++14 -o CMakeFiles/salmon_core.dir/SalmonUtils.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/SalmonUtils.cpp cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -std=c++14 -o CMakeFiles/salmon_core.dir/DistributionUtils.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/DistributionUtils.cpp cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -std=c++14 -o CMakeFiles/salmon_core.dir/SalmonExceptions.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/SalmonExceptions.cpp cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -std=c++14 -o CMakeFiles/salmon_core.dir/SalmonStringUtils.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/SalmonStringUtils.cpp cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -std=c++14 -o CMakeFiles/salmon_core.dir/SimplePosBias.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/SimplePosBias.cpp cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -std=c++14 -o CMakeFiles/salmon_core.dir/SGSmooth.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/SGSmooth.cpp [ 45%] Building CXX object src/CMakeFiles/salmon_core.dir/__/external/install/src/rapmap/metro/metrohash64.cpp.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -std=c++14 -o CMakeFiles/salmon_core.dir/__/external/install/src/rapmap/metro/metrohash64.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/src/rapmap/metro/metrohash64.cpp make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' [ 45%] Built target ksw2pp_sse4 make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' [ 45%] Built target ksw2pp_sse2 make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' [ 45%] Built target ksw2pp_basic make -f src/CMakeFiles/ksw2pp.dir/build.make src/CMakeFiles/ksw2pp.dir/depend make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' cd /tmp/guix-build-salmon-0.13.1.drv-0/build && /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src /tmp/guix-build-salmon-0.13.1.drv-0/build /tmp/guix-build-salmon-0.13.1.drv-0/build/src /tmp/guix-build-salmon-0.13.1.drv-0/build/src/CMakeFiles/ksw2pp.dir/DependInfo.cmake --color= Scanning dependencies of target ksw2pp make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make -f src/CMakeFiles/ksw2pp.dir/build.make src/CMakeFiles/ksw2pp.dir/build make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' [ 46%] Linking CXX static library libksw2pp.a cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -P CMakeFiles/ksw2pp.dir/cmake_clean_target.cmake cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -E cmake_link_script CMakeFiles/ksw2pp.dir/link.txt --verbose=1 /gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/bin/ar qc libksw2pp.a CMakeFiles/ksw2pp_sse2.dir/__/external/install/src/rapmap/ksw2pp/ksw2_extd2_sse.c.o CMakeFiles/ksw2pp_sse2.dir/__/external/install/src/rapmap/ksw2pp/ksw2_extf2_sse.c.o CMakeFiles/ksw2pp_sse2.dir/__/external/install/src/rapmap/ksw2pp/ksw2_extz2_sse.c.o CMakeFiles/ksw2pp_sse4.dir/__/external/install/src/rapmap/ksw2pp/ksw2_extd2_sse.c.o CMakeFiles/ksw2pp_sse4.dir/__/external/install/src/rapmap/ksw2pp/ksw2_extf2_sse.c.o CMakeFiles/ksw2pp_sse4.dir/__/external/install/src/rapmap/ksw2pp/ksw2_extz2_sse.c.o CMakeFiles/ksw2pp_basic.dir/__/external/install/src/rapmap/ksw2pp/kalloc.c.o CMakeFiles/ksw2pp_basic.dir/__/external/install/src/rapmap/ksw2pp/ksw2_extd.c.o CMakeFiles/ksw2pp_basic.dir/__/external/install/src/rapmap/ksw2pp/ksw2_extz.c.o CMakeFiles/ksw2pp_basic.dir/__/external/install/src/rapmap/ksw2pp/ksw2_gg.c.o CMakeFiles/ksw2pp_basic.dir/__/external/install/src/rapmap/ksw2pp/ksw2_gg2.c.o CMakeFiles/ksw2pp_basic.dir/__/external/install/src/rapmap/ksw2pp/ksw2_gg2_sse.c.o CMakeFiles/ksw2pp_basic.dir/__/external/install/src/rapmap/ksw2pp/KSW2Aligner.cpp.o /gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/bin/ranlib libksw2pp.a make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' [ 46%] Built target ksw2pp In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/FragmentLengthDistribution.hpp:13:0, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/DistributionUtils.cpp:2: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/atomic.h:21:141: note: #pragma message: TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/AtomicMatrix.hpp:4:0, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/AlignmentModel.hpp:11, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/AlignmentLibrary.hpp:13, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/SalmonUtils.cpp:16: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/atomic.h:21:141: note: #pragma message: TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ [ 47%] Linking CXX static library libalevin_core.a cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -P CMakeFiles/alevin_core.dir/cmake_clean_target.cmake cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -E cmake_link_script CMakeFiles/alevin_core.dir/link.txt --verbose=1 /gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/bin/ar qc libalevin_core.a CMakeFiles/alevin_core.dir/edlib.cpp.o CMakeFiles/alevin_core.dir/AlevinUtils.cpp.o /gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/bin/ranlib libalevin_core.a make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' [ 47%] Built target alevin_core [ 49%] Linking CXX static library libsalmon_core.a cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -P CMakeFiles/salmon_core.dir/cmake_clean_target.cmake cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -E cmake_link_script CMakeFiles/salmon_core.dir/link.txt --verbose=1 /gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/bin/ar qc libsalmon_core.a CMakeFiles/salmon_core.dir/jellyfish/mer_dna.cc.o CMakeFiles/salmon_core.dir/xxhash.c.o CMakeFiles/salmon_core.dir/TranscriptGroup.cpp.o CMakeFiles/salmon_core.dir/EffectiveLengthStats.cpp.o CMakeFiles/salmon_core.dir/LibraryFormat.cpp.o CMakeFiles/salmon_core.dir/GenomicFeature.cpp.o CMakeFiles/salmon_core.dir/VersionChecker.cpp.o CMakeFiles/salmon_core.dir/SBModel.cpp.o CMakeFiles/salmon_core.dir/FastxParser.cpp.o CMakeFiles/salmon_core.dir/StadenUtils.cpp.o CMakeFiles/salmon_core.dir/SalmonUtils.cpp.o CMakeFiles/salmon_core.dir/DistributionUtils.cpp.o CMakeFiles/salmon_core.dir/SalmonExceptions.cpp.o CMakeFiles/salmon_core.dir/SalmonStringUtils.cpp.o CMakeFiles/salmon_core.dir/SimplePosBias.cpp.o CMakeFiles/salmon_core.dir/SGSmooth.cpp.o CMakeFiles/salmon_core.dir/__/external/install/src/rapmap/metro/metrohash64.cpp.o /gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/bin/ranlib libsalmon_core.a make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' [ 49%] Built target salmon_core make -f src/CMakeFiles/salmon.dir/build.make src/CMakeFiles/salmon.dir/depend make -f src/CMakeFiles/unitTests.dir/build.make src/CMakeFiles/unitTests.dir/depend make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' cd /tmp/guix-build-salmon-0.13.1.drv-0/build && /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src /tmp/guix-build-salmon-0.13.1.drv-0/build /tmp/guix-build-salmon-0.13.1.drv-0/build/src /tmp/guix-build-salmon-0.13.1.drv-0/build/src/CMakeFiles/unitTests.dir/DependInfo.cmake --color= make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' cd /tmp/guix-build-salmon-0.13.1.drv-0/build && /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src /tmp/guix-build-salmon-0.13.1.drv-0/build /tmp/guix-build-salmon-0.13.1.drv-0/build/src /tmp/guix-build-salmon-0.13.1.drv-0/build/src/CMakeFiles/salmon.dir/DependInfo.cmake --color= Scanning dependencies of target unitTests make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make -f src/CMakeFiles/unitTests.dir/build.make src/CMakeFiles/unitTests.dir/build make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' [ 52%] 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-I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -std=c++14 -o CMakeFiles/unitTests.dir/__/external/install/src/rapmap/rank9b.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/src/rapmap/rank9b.cpp cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/gcc -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -o CMakeFiles/unitTests.dir/__/external/install/src/rapmap/bit_array.c.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/src/rapmap/bit_array.c Scanning dependencies of target salmon make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make -f src/CMakeFiles/salmon.dir/build.make src/CMakeFiles/salmon.dir/build make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' [ 56%] Building CXX object src/CMakeFiles/salmon.dir/__/external/install/src/rapmap/RapMapFileSystem.cpp.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 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-I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -std=c++14 -o CMakeFiles/salmon.dir/__/external/install/src/rapmap/RapMapSAIndex.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/src/rapmap/RapMapSAIndex.cpp cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -std=c++14 -o CMakeFiles/salmon.dir/__/external/install/src/rapmap/RapMapUtils.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/src/rapmap/RapMapUtils.cpp cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 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/tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/gcc -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -o CMakeFiles/salmon.dir/__/external/install/src/rapmap/bit_array.c.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/src/rapmap/bit_array.c cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -std=c++14 -o CMakeFiles/salmon.dir/EMUtils.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/EMUtils.cpp cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -std=c++14 -o CMakeFiles/salmon.dir/CollapsedEMOptimizer.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/CollapsedEMOptimizer.cpp cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -std=c++14 -o CMakeFiles/salmon.dir/CollapsedCellOptimizer.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/CollapsedCellOptimizer.cpp cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -std=c++14 -o CMakeFiles/salmon.dir/CollapsedGibbsSampler.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/CollapsedGibbsSampler.cpp [ 74%] Building CXX object src/CMakeFiles/salmon.dir/Alevin.cpp.o [ 74%] Building CXX object src/CMakeFiles/salmon.dir/Salmon.cpp.o [ 76%] Building CXX object src/CMakeFiles/salmon.dir/DedupUMI.cpp.o [ 77%] Building CXX object src/CMakeFiles/salmon.dir/Graph.cpp.o [ 77%] Building CXX object src/CMakeFiles/salmon.dir/BuildSalmonIndex.cpp.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -std=c++14 -o CMakeFiles/salmon.dir/Salmon.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/Salmon.cpp cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -std=c++14 -o CMakeFiles/salmon.dir/BuildSalmonIndex.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/BuildSalmonIndex.cpp cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -std=c++14 -o CMakeFiles/salmon.dir/Graph.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/Graph.cpp cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -std=c++14 -o CMakeFiles/salmon.dir/DedupUMI.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/DedupUMI.cpp cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -std=c++14 -o CMakeFiles/salmon.dir/Alevin.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/Alevin.cpp [ 78%] Building CXX object src/CMakeFiles/salmon.dir/AlevinHash.cpp.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -std=c++14 -o CMakeFiles/salmon.dir/AlevinHash.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/AlevinHash.cpp [ 80%] Building CXX object src/CMakeFiles/salmon.dir/SalmonAlevin.cpp.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -std=c++14 -o CMakeFiles/salmon.dir/SalmonAlevin.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/SalmonAlevin.cpp [ 81%] Building CXX object src/CMakeFiles/salmon.dir/WhiteList.cpp.o [ 83%] Building CXX object src/CMakeFiles/salmon.dir/SalmonQuantify.cpp.o [ 84%] Building CXX object src/CMakeFiles/salmon.dir/FragmentLengthDistribution.cpp.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -std=c++14 -o CMakeFiles/salmon.dir/WhiteList.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/WhiteList.cpp cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -std=c++14 -o CMakeFiles/salmon.dir/SalmonQuantify.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/SalmonQuantify.cpp [ 85%] Building CXX object src/CMakeFiles/salmon.dir/FragmentStartPositionDistribution.cpp.o [ 87%] Building CXX object src/CMakeFiles/salmon.dir/SequenceBiasModel.cpp.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -std=c++14 -o CMakeFiles/salmon.dir/FragmentLengthDistribution.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/FragmentLengthDistribution.cpp [ 90%] Building CXX object src/CMakeFiles/salmon.dir/GZipWriter.cpp.o [ 90%] Building CXX object src/CMakeFiles/salmon.dir/SalmonQuantMerge.cpp.o [ 91%] Building CXX object src/CMakeFiles/salmon.dir/ProgramOptionsGenerator.cpp.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -std=c++14 -o CMakeFiles/salmon.dir/FragmentStartPositionDistribution.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/FragmentStartPositionDistribution.cpp cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -std=c++14 -o CMakeFiles/salmon.dir/SequenceBiasModel.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/SequenceBiasModel.cpp cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -std=c++14 -o CMakeFiles/salmon.dir/GZipWriter.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/GZipWriter.cpp [ 92%] Building CXX object src/CMakeFiles/salmon.dir/AlignmentModel.cpp.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -std=c++14 -o CMakeFiles/salmon.dir/SalmonQuantMerge.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/SalmonQuantMerge.cpp cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -std=c++14 -o CMakeFiles/salmon.dir/ProgramOptionsGenerator.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/ProgramOptionsGenerator.cpp cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -std=c++14 -o CMakeFiles/salmon.dir/AlignmentModel.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/AlignmentModel.cpp [ 94%] Building CXX object src/CMakeFiles/salmon.dir/FASTAParser.cpp.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -std=c++14 -o CMakeFiles/salmon.dir/FASTAParser.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/FASTAParser.cpp [ 95%] Building CXX object src/CMakeFiles/salmon.dir/SalmonQuantifyAlignments.cpp.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -std=c++14 -o CMakeFiles/salmon.dir/SalmonQuantifyAlignments.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/SalmonQuantifyAlignments.cpp [ 97%] Building CXX object src/CMakeFiles/salmon.dir/BAMUtils.cpp.o cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/eigen3 -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/cereal/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap -I/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/include/rapmap/digestpp -O2 -g -DNDEBUG -pthread -std=c++14 -o CMakeFiles/salmon.dir/BAMUtils.cpp.o -c /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/BAMUtils.cpp In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/EMUtils.hpp:5:0, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/EMUtils.cpp:1: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/atomic.h:21:141: note: #pragma message: TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/AtomicMatrix.hpp:4:0, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/AlignmentModel.hpp:11, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/AlignmentModel.cpp:8: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/atomic.h:21:141: note: #pragma message: TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/AtomicMatrix.hpp:4:0, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/SequenceBiasModel.hpp:11, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/SequenceBiasModel.cpp:7: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/atomic.h:21:141: note: #pragma message: TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/FragmentLengthDistribution.hpp:13:0, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/Transcript.hpp:4, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/FASTAParser.cpp:13: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/atomic.h:21:141: note: #pragma message: TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/BuildSalmonIndex.cpp:32:0: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/task_scheduler_init.h:21:154: note: #pragma message: TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/FragmentLengthDistribution.hpp:13:0, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/Transcript.hpp:4, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/tests/UnitTests.cpp:7: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/atomic.h:21:141: note: #pragma message: TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/WhiteList.cpp:2:0: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/task_scheduler_init.h:21:154: note: #pragma message: TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/FragmentLengthDistribution.hpp:13:0, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/Transcript.hpp:4, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/BuildSalmonIndex.cpp:37: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/atomic.h:21:141: note: #pragma message: TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/CollapsedEMOptimizer.cpp:11:0: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/task_scheduler_init.h:21:154: note: #pragma message: TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/AtomicMatrix.hpp:4:0, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/AlignmentModel.hpp:11, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/AlignmentLibrary.hpp:13, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/CollapsedEMOptimizer.cpp:22: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/atomic.h:21:141: note: #pragma message: TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/CollapsedGibbsSampler.cpp:15:0: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/task_scheduler_init.h:21:154: note: #pragma message: TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/AtomicMatrix.hpp:4:0, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/AlignmentModel.hpp:11, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/AlignmentLibrary.hpp:13, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/CollapsedGibbsSampler.cpp:30: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/atomic.h:21:141: note: #pragma message: TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/FragmentLengthDistribution.hpp:13:0, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/FragmentLengthDistribution.cpp:10: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/atomic.h:21:141: note: #pragma message: TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/FragmentLengthDistribution.hpp:13:0, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/FragmentLengthDistribution.cpp:10: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/atomic.h:21:141: note: #pragma message: TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/FragmentStartPositionDistribution.hpp:12:0, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/FragmentStartPositionDistribution.cpp:9: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/atomic.h:21:141: note: #pragma message: TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/CollapsedCellOptimizer.hpp:9:0, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/CollapsedCellOptimizer.cpp:1: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/atomic.h:21:141: note: #pragma message: TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/CollapsedCellOptimizer.hpp:10:0, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/CollapsedCellOptimizer.cpp:1: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/task_scheduler_init.h:21:154: note: #pragma message: TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/SalmonQuantifyAlignments.cpp:19:0: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/atomic.h:21:141: note: #pragma message: TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/FragmentLengthDistribution.hpp:13:0, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/Transcript.hpp:4, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/ClusterForest.hpp:7, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/ReadExperiment.hpp:5, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/GZipWriter.hpp:13, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/AlevinHash.hpp:8, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/AlevinHash.cpp:1: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/atomic.h:21:141: note: #pragma message: TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/SalmonQuantify.cpp:73:0: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/task_scheduler_init.h:21:154: note: #pragma message: TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/SalmonAlevin.cpp:73:0: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/task_scheduler_init.h:21:154: note: #pragma message: TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/FragmentLengthDistribution.hpp:13:0, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/Transcript.hpp:4, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/ClusterForest.hpp:7, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/ReadExperiment.hpp:5, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/GZipWriter.hpp:13, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/AlevinHash.hpp:8, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/Alevin.cpp:58: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/atomic.h:21:141: note: #pragma message: TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/FragmentLengthDistribution.hpp:13:0, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/Transcript.hpp:4, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/ClusterForest.hpp:7, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/SalmonQuantify.cpp:85: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/atomic.h:21:141: note: #pragma message: TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/AtomicMatrix.hpp:4:0, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/AlignmentModel.hpp:11, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/AlignmentLibrary.hpp:13, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/GZipWriter.cpp:7: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/atomic.h:21:141: note: #pragma message: TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/CollapsedCellOptimizer.hpp:9:0, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/SalmonAlevin.cpp:93: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/atomic.h:21:141: note: #pragma message: TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/CollapsedEMOptimizer.hpp:8:0, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/SalmonQuantifyAlignments.cpp:49: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/task_scheduler_init.h:21:154: note: #pragma message: TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/CollapsedCellOptimizer.hpp:10:0, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/AlevinHash.hpp:10, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/AlevinHash.cpp:1: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/task_scheduler_init.h:21:154: note: #pragma message: TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/CollapsedCellOptimizer.hpp:10:0, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/AlevinHash.hpp:10, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/Alevin.cpp:58: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/task_scheduler_init.h:21:154: note: #pragma message: TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ In file included from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/FragmentLengthDistribution.hpp:13:0, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/Transcript.hpp:4, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/ClusterForest.hpp:7, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/ReadExperiment.hpp:5, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/GZipWriter.hpp:13, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/include/DedupUMI.hpp:5, from /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src/DedupUMI.cpp:1: /gnu/store/qc926v75q54k94mwgz6gn4s02sjgrr03-tbb-2020.3/include/tbb/atomic.h:21:141: note: #pragma message: TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual. #pragma message("TBB Warning: tbb/atomic.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") ^ [ 98%] Linking CXX executable unitTests cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -E cmake_link_script CMakeFiles/unitTests.dir/link.txt --verbose=1 /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -O2 -g -DNDEBUG CMakeFiles/unitTests.dir/__/tests/UnitTests.cpp.o CMakeFiles/unitTests.dir/FragmentLengthDistribution.cpp.o CMakeFiles/unitTests.dir/__/external/install/src/rapmap/rank9b.cpp.o CMakeFiles/unitTests.dir/__/external/install/src/rapmap/bit_array.c.o -o unitTests -L/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/lib -L/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/lib -Wl,-rpath,"\$ORIGIN/../lib:\$ORIGIN/../../lib:\$ORIGIN/:\$ORIGIN/../../external/install/lib" libsalmon_core.a libalevin_core.a -lgff -lboost_iostreams -lboost_filesystem -lboost_system -lboost_thread -lboost_timer -lboost_chrono -lboost_program_options /gnu/store/nwab4aj8jy6qbjrg1a3pmsmmqw6dym20-libstadenio-1.14.8/lib/libstaden-read.so /gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/lib/libz.so /gnu/store/jfyabybqqsqnai8g5j34i5s8h8impsrm-libdivsufsort-2.0.1/lib/libdivsufsort.so /gnu/store/jfyabybqqsqnai8g5j34i5s8h8impsrm-libdivsufsort-2.0.1/lib/libdivsufsort64.so -lm /gnu/store/r7k859hmcnkazf492fasqvk25jflnfk6-xz-5.2.4/lib/liblzma.so /gnu/store/a9f7wmc75hbpg520phw9z4l9asm3qvsw-bzip2-1.0.8/lib/libbz2.so -ltbbmalloc_proxy -ltbbmalloc -ltbb -lgomp -lrt -ldl -pthread Copying unitTests cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -E copy /tmp/guix-build-salmon-0.13.1.drv-0/build/src/unitTests /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/tests/unitTests make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' [ 98%] Built target unitTests [100%] Linking CXX executable salmon cd /tmp/guix-build-salmon-0.13.1.drv-0/build/src && /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -E cmake_link_script CMakeFiles/salmon.dir/link.txt --verbose=1 /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -O2 -g -DNDEBUG CMakeFiles/salmon.dir/__/external/install/src/rapmap/RapMapFileSystem.cpp.o CMakeFiles/salmon.dir/__/external/install/src/rapmap/RapMapSAIndexer.cpp.o CMakeFiles/salmon.dir/__/external/install/src/rapmap/RapMapSAIndex.cpp.o CMakeFiles/salmon.dir/__/external/install/src/rapmap/RapMapUtils.cpp.o CMakeFiles/salmon.dir/__/external/install/src/rapmap/HitManager.cpp.o CMakeFiles/salmon.dir/__/external/install/src/rapmap/rank9b.cpp.o CMakeFiles/salmon.dir/__/external/install/src/rapmap/bit_array.c.o CMakeFiles/salmon.dir/EMUtils.cpp.o CMakeFiles/salmon.dir/CollapsedEMOptimizer.cpp.o CMakeFiles/salmon.dir/CollapsedCellOptimizer.cpp.o CMakeFiles/salmon.dir/CollapsedGibbsSampler.cpp.o CMakeFiles/salmon.dir/Salmon.cpp.o CMakeFiles/salmon.dir/BuildSalmonIndex.cpp.o CMakeFiles/salmon.dir/Graph.cpp.o CMakeFiles/salmon.dir/DedupUMI.cpp.o CMakeFiles/salmon.dir/Alevin.cpp.o CMakeFiles/salmon.dir/AlevinHash.cpp.o CMakeFiles/salmon.dir/SalmonAlevin.cpp.o CMakeFiles/salmon.dir/WhiteList.cpp.o CMakeFiles/salmon.dir/SalmonQuantify.cpp.o CMakeFiles/salmon.dir/FragmentLengthDistribution.cpp.o CMakeFiles/salmon.dir/FragmentStartPositionDistribution.cpp.o CMakeFiles/salmon.dir/SequenceBiasModel.cpp.o CMakeFiles/salmon.dir/GZipWriter.cpp.o CMakeFiles/salmon.dir/SalmonQuantMerge.cpp.o CMakeFiles/salmon.dir/ProgramOptionsGenerator.cpp.o CMakeFiles/salmon.dir/FASTAParser.cpp.o CMakeFiles/salmon.dir/AlignmentModel.cpp.o CMakeFiles/salmon.dir/SalmonQuantifyAlignments.cpp.o CMakeFiles/salmon.dir/BAMUtils.cpp.o -o salmon -L/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/lib -L/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/external/install/lib -Wl,-rpath,"\$ORIGIN/../lib:\$ORIGIN/../../lib:\$ORIGIN/:\$ORIGIN/../../external/install/lib" libsalmon_core.a libalevin_core.a -lgff -lboost_iostreams -lboost_filesystem -lboost_system -lboost_thread -lboost_timer -lboost_chrono -lboost_program_options /gnu/store/nwab4aj8jy6qbjrg1a3pmsmmqw6dym20-libstadenio-1.14.8/lib/libstaden-read.so /gnu/store/rykm237xkmq7rl1p0nwass01p090p88x-zlib-1.2.11/lib/libz.so /gnu/store/jfyabybqqsqnai8g5j34i5s8h8impsrm-libdivsufsort-2.0.1/lib/libdivsufsort.so /gnu/store/jfyabybqqsqnai8g5j34i5s8h8impsrm-libdivsufsort-2.0.1/lib/libdivsufsort64.so -lm /gnu/store/r7k859hmcnkazf492fasqvk25jflnfk6-xz-5.2.4/lib/liblzma.so /gnu/store/a9f7wmc75hbpg520phw9z4l9asm3qvsw-bzip2-1.0.8/lib/libbz2.so -ltbbmalloc_proxy -ltbbmalloc -ltbb -lgomp /gnu/store/nzygsjdnr69gmqhfchys2dkb8lnra89x-jemalloc-5.2.1/lib/libjemalloc.a -lrt libksw2pp.a -ldl -pthread make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' [100%] Built target salmon make[1]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -E cmake_progress_start /tmp/guix-build-salmon-0.13.1.drv-0/build/CMakeFiles 0 phase `build' succeeded after 161.4 seconds starting phase `check' Running tests... /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/ctest --force-new-ctest-process Test project /tmp/guix-build-salmon-0.13.1.drv-0/build Start 1: unit_tests 1/2 Test #1: unit_tests ....................... Passed 5.35 sec Start 2: salmon_read_test_quasi 2/2 Test #2: salmon_read_test_quasi ........... Passed 0.87 sec 100% tests passed, 0 tests failed out of 2 Total Test time (real) = 6.22 sec phase `check' succeeded after 6.2 seconds starting phase `install' /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -S/tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout -B/tmp/guix-build-salmon-0.13.1.drv-0/build --check-build-system CMakeFiles/Makefile.cmake 0 /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -E cmake_progress_start /tmp/guix-build-salmon-0.13.1.drv-0/build/CMakeFiles /tmp/guix-build-salmon-0.13.1.drv-0/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make -f src/CMakeFiles/ksw2pp_basic.dir/build.make src/CMakeFiles/ksw2pp_basic.dir/depend make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' cd /tmp/guix-build-salmon-0.13.1.drv-0/build && /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src /tmp/guix-build-salmon-0.13.1.drv-0/build /tmp/guix-build-salmon-0.13.1.drv-0/build/src /tmp/guix-build-salmon-0.13.1.drv-0/build/src/CMakeFiles/ksw2pp_basic.dir/DependInfo.cmake --color= make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make -f src/CMakeFiles/ksw2pp_basic.dir/build.make src/CMakeFiles/ksw2pp_basic.dir/build make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make[2]: Nothing to be done for 'src/CMakeFiles/ksw2pp_basic.dir/build'. make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' [ 9%] Built target ksw2pp_basic make -f src/CMakeFiles/ksw2pp_sse4.dir/build.make src/CMakeFiles/ksw2pp_sse4.dir/depend make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' cd /tmp/guix-build-salmon-0.13.1.drv-0/build && /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src /tmp/guix-build-salmon-0.13.1.drv-0/build /tmp/guix-build-salmon-0.13.1.drv-0/build/src /tmp/guix-build-salmon-0.13.1.drv-0/build/src/CMakeFiles/ksw2pp_sse4.dir/DependInfo.cmake --color= make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make -f src/CMakeFiles/ksw2pp_sse4.dir/build.make src/CMakeFiles/ksw2pp_sse4.dir/build make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make[2]: Nothing to be done for 'src/CMakeFiles/ksw2pp_sse4.dir/build'. make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' [ 14%] Built target ksw2pp_sse4 make -f src/CMakeFiles/ksw2pp_sse2.dir/build.make src/CMakeFiles/ksw2pp_sse2.dir/depend make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' cd /tmp/guix-build-salmon-0.13.1.drv-0/build && /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src /tmp/guix-build-salmon-0.13.1.drv-0/build /tmp/guix-build-salmon-0.13.1.drv-0/build/src /tmp/guix-build-salmon-0.13.1.drv-0/build/src/CMakeFiles/ksw2pp_sse2.dir/DependInfo.cmake --color= make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make -f src/CMakeFiles/ksw2pp_sse2.dir/build.make src/CMakeFiles/ksw2pp_sse2.dir/build make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make[2]: Nothing to be done for 'src/CMakeFiles/ksw2pp_sse2.dir/build'. make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' [ 18%] Built target ksw2pp_sse2 make -f src/CMakeFiles/ksw2pp.dir/build.make src/CMakeFiles/ksw2pp.dir/depend make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' cd /tmp/guix-build-salmon-0.13.1.drv-0/build && /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src /tmp/guix-build-salmon-0.13.1.drv-0/build /tmp/guix-build-salmon-0.13.1.drv-0/build/src /tmp/guix-build-salmon-0.13.1.drv-0/build/src/CMakeFiles/ksw2pp.dir/DependInfo.cmake --color= make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make -f src/CMakeFiles/ksw2pp.dir/build.make src/CMakeFiles/ksw2pp.dir/build make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make[2]: Nothing to be done for 'src/CMakeFiles/ksw2pp.dir/build'. make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' [ 19%] Built target ksw2pp make -f src/CMakeFiles/alevin_core.dir/build.make src/CMakeFiles/alevin_core.dir/depend make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' cd /tmp/guix-build-salmon-0.13.1.drv-0/build && /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src /tmp/guix-build-salmon-0.13.1.drv-0/build /tmp/guix-build-salmon-0.13.1.drv-0/build/src /tmp/guix-build-salmon-0.13.1.drv-0/build/src/CMakeFiles/alevin_core.dir/DependInfo.cmake --color= make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make -f src/CMakeFiles/alevin_core.dir/build.make src/CMakeFiles/alevin_core.dir/build make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make[2]: Nothing to be done for 'src/CMakeFiles/alevin_core.dir/build'. make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' [ 23%] Built target alevin_core make -f src/CMakeFiles/salmon_core.dir/build.make src/CMakeFiles/salmon_core.dir/depend make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' cd /tmp/guix-build-salmon-0.13.1.drv-0/build && /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src /tmp/guix-build-salmon-0.13.1.drv-0/build /tmp/guix-build-salmon-0.13.1.drv-0/build/src /tmp/guix-build-salmon-0.13.1.drv-0/build/src/CMakeFiles/salmon_core.dir/DependInfo.cmake --color= make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make -f src/CMakeFiles/salmon_core.dir/build.make src/CMakeFiles/salmon_core.dir/build make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make[2]: Nothing to be done for 'src/CMakeFiles/salmon_core.dir/build'. make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' [ 49%] Built target salmon_core make -f src/CMakeFiles/salmon.dir/build.make src/CMakeFiles/salmon.dir/depend make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' cd /tmp/guix-build-salmon-0.13.1.drv-0/build && /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src /tmp/guix-build-salmon-0.13.1.drv-0/build /tmp/guix-build-salmon-0.13.1.drv-0/build/src /tmp/guix-build-salmon-0.13.1.drv-0/build/src/CMakeFiles/salmon.dir/DependInfo.cmake --color= make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make -f src/CMakeFiles/salmon.dir/build.make src/CMakeFiles/salmon.dir/build make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make[2]: Nothing to be done for 'src/CMakeFiles/salmon.dir/build'. make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' [ 92%] Built target salmon make -f src/CMakeFiles/unitTests.dir/build.make src/CMakeFiles/unitTests.dir/depend make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' cd /tmp/guix-build-salmon-0.13.1.drv-0/build && /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout /tmp/guix-build-salmon-0.13.1.drv-0/salmon-0.13.1-checkout/src /tmp/guix-build-salmon-0.13.1.drv-0/build /tmp/guix-build-salmon-0.13.1.drv-0/build/src /tmp/guix-build-salmon-0.13.1.drv-0/build/src/CMakeFiles/unitTests.dir/DependInfo.cmake --color= make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make -f src/CMakeFiles/unitTests.dir/build.make src/CMakeFiles/unitTests.dir/build make[2]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make[2]: Nothing to be done for 'src/CMakeFiles/unitTests.dir/build'. make[2]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' [100%] Built target unitTests make[1]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -E cmake_progress_start /tmp/guix-build-salmon-0.13.1.drv-0/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/tmp/guix-build-salmon-0.13.1.drv-0/build' Install the project... /gnu/store/3dsl2jalrcyldkrsqab1hc6sv8pyag9z-cmake-minimal-3.16.5/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /gnu/store/cznf4g973kdfambm5h244pigchcqxiwc-salmon-0.13.1/bin/salmon -- Installing: /gnu/store/cznf4g973kdfambm5h244pigchcqxiwc-salmon-0.13.1/lib/libsalmon_core.a Installation complete. Please ensure the following paths are set properly. ========================================================================== Please add /gnu/store/cznf4g973kdfambm5h244pigchcqxiwc-salmon-0.13.1/bin to your PATH Please add /gnu/store/cznf4g973kdfambm5h244pigchcqxiwc-salmon-0.13.1/lib to your LD_LIBRARY_PATH ========================================================================== phase `install' succeeded after 0.5 seconds starting phase `patch-shebangs' phase `patch-shebangs' succeeded after 0.0 seconds starting phase `strip' stripping binaries in "/gnu/store/cznf4g973kdfambm5h244pigchcqxiwc-salmon-0.13.1/lib" with "strip" and flags ("--strip-debug") stripping binaries in "/gnu/store/cznf4g973kdfambm5h244pigchcqxiwc-salmon-0.13.1/bin" with "strip" and flags ("--strip-debug") phase `strip' succeeded after 0.1 seconds starting phase `validate-runpath' validating RUNPATH of 0 binaries in "/gnu/store/cznf4g973kdfambm5h244pigchcqxiwc-salmon-0.13.1/lib"... validating RUNPATH of 1 binaries in "/gnu/store/cznf4g973kdfambm5h244pigchcqxiwc-salmon-0.13.1/bin"... phase `validate-runpath' succeeded after 0.0 seconds starting phase `validate-documentation-location' phase `validate-documentation-location' succeeded after 0.0 seconds starting phase `delete-info-dir-file' phase `delete-info-dir-file' succeeded after 0.0 seconds starting phase `patch-dot-desktop-files' phase `patch-dot-desktop-files' succeeded after 0.0 seconds starting phase `install-license-files' installing 1 license files from '../salmon-0.13.1-checkout' phase `install-license-files' succeeded after 0.0 seconds starting phase `reset-gzip-timestamps' phase `reset-gzip-timestamps' succeeded after 0.0 seconds starting phase `compress-documentation' phase `compress-documentation' succeeded after 0.0 seconds