starting phase `set-SOURCE-DATE-EPOCH' phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds starting phase `set-paths' environment variable `PATH' set to `/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/bin:/gnu/store/v6f44zccwh9z5zk3pjlywjybbi8n2hjh-tar-1.32/bin:/gnu/store/ncydgq2znms5n1d2k5yqshhf58nsixwv-gzip-1.10/bin:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/bin:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/bin:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/bin:/gnu/store/n4n560pfvvw50a9369axw5vj5rrqfj1n-diffutils-3.7/bin:/gnu/store/cd5qf3kcnlq35p9k392pjdpdzpsnds70-patch-2.7.6/bin:/gnu/store/hic7snhayfl7m6cpfqqr73nmm19bpqkg-findutils-4.7.0/bin:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/bin:/gnu/store/ishk7fswcs4gkwcp8mh788z4mvvl9bxh-sed-4.8/bin:/gnu/store/bhs4rj58v8j1narb2454raan2ps38xd8-grep-3.4/bin:/gnu/store/57xj5gcy1jbl9ai2lnrqnpr0dald9i65-coreutils-8.32/bin:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/bin:/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin:/gnu/store/mpa04aq8lblbcviyxywxcsb1zbi0mf39-ld-wrapper-0/bin:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/bin:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/bin:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/sbin' environment variable `R_LIBS_SITE' unset environment variable `BASH_LOADABLES_PATH' unset environment variable `C_INCLUDE_PATH' set to `/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/include:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/include:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/include:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/include:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/include:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/include:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/include:/gnu/store/gfapkk5c6hvl1d94m4sqnhn7f9l5gqyh-linux-libre-headers-5.4.20/include' environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/include:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/include:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/include:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/include:/gnu/store/hm40bxnv8jxmbc1lpb7zfimii4xm9m81-make-4.3/include:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/include:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include/c++:/gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/include:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/include:/gnu/store/gfapkk5c6hvl1d94m4sqnhn7f9l5gqyh-linux-libre-headers-5.4.20/include' environment variable `LIBRARY_PATH' set to `/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib:/gnu/store/i8h2pcxqdq07ijm3ibkka8f4smn1w48v-bzip2-1.0.8/lib:/gnu/store/9860f1abqj8wjjnwl8a9v54pdcc3bhgf-xz-5.2.4/lib:/gnu/store/60g7r3l01fd7c58yjbm6krgcwj1jkpwg-file-5.38/lib:/gnu/store/swqdvwri9dbv6zssg6v0by7l05hd6wxp-gawk-5.0.1/lib:/gnu/store/m1z7cdbqsqyp9xnjw5cvlb4a7gkcg3m4-binutils-2.34/lib:/gnu/store/fa6wj5bxkj5ll1d7292a70knmyl7a0cr-glibc-2.31/lib:/gnu/store/s3dcqzwqaakv1yx37by9chksdbkgih17-glibc-2.31-static/lib:/gnu/store/hwcky7446s952w0mwchhmm211ll07zrq-glibc-utf8-locales-2.31/lib' environment variable `GUIX_LOCPATH' set to `/gnu/store/hwcky7446s952w0mwchhmm211ll07zrq-glibc-utf8-locales-2.31/lib/locale' phase `set-paths' succeeded after 0.0 seconds starting phase `install-locale' using 'en_US.utf8' locale for category "LC_ALL" phase `install-locale' succeeded after 0.0 seconds starting phase `unpack' zlibbioc/ChangeLog zlibbioc/DESCRIPTION zlibbioc/LICENSE zlibbioc/NAMESPACE zlibbioc/R/ zlibbioc/R/zzz.R zlibbioc/README.md zlibbioc/build/ zlibbioc/build/vignette.rds zlibbioc/configure zlibbioc/configure.ac zlibbioc/inst/ zlibbioc/inst/doc/ zlibbioc/inst/doc/UsingZlibbioc.Rnw zlibbioc/inst/doc/UsingZlibbioc.pdf zlibbioc/man/ zlibbioc/man/pkgconfig.Rd zlibbioc/man/zlibbioc-package.Rd zlibbioc/src/ zlibbioc/src/Makevars zlibbioc/src/Makevars.in zlibbioc/src/Makevars.win zlibbioc/src/R_init_zlibbioc.c zlibbioc/src/zlib-1.2.5/ zlibbioc/src/zlib-1.2.5/Makefile.in zlibbioc/src/zlib-1.2.5/adler32.c zlibbioc/src/zlib-1.2.5/compress.c zlibbioc/src/zlib-1.2.5/configure zlibbioc/src/zlib-1.2.5/crc32.c zlibbioc/src/zlib-1.2.5/crc32.h zlibbioc/src/zlib-1.2.5/deflate.c zlibbioc/src/zlib-1.2.5/deflate.h zlibbioc/src/zlib-1.2.5/gzclose.c zlibbioc/src/zlib-1.2.5/gzguts.h zlibbioc/src/zlib-1.2.5/gzlib.c zlibbioc/src/zlib-1.2.5/gzread.c zlibbioc/src/zlib-1.2.5/gzwrite.c zlibbioc/src/zlib-1.2.5/infback.c zlibbioc/src/zlib-1.2.5/inffast.c zlibbioc/src/zlib-1.2.5/inffast.h zlibbioc/src/zlib-1.2.5/inffixed.h zlibbioc/src/zlib-1.2.5/inflate.c zlibbioc/src/zlib-1.2.5/inflate.h zlibbioc/src/zlib-1.2.5/inftrees.c zlibbioc/src/zlib-1.2.5/inftrees.h zlibbioc/src/zlib-1.2.5/trees.c zlibbioc/src/zlib-1.2.5/trees.h zlibbioc/src/zlib-1.2.5/uncompr.c zlibbioc/src/zlib-1.2.5/win32/ zlibbioc/src/zlib-1.2.5/win32/Makefile.gcc zlibbioc/src/zlib-1.2.5/win32/README-WIN32.txt zlibbioc/src/zlib-1.2.5/win32/zlib.def zlibbioc/src/zlib-1.2.5/win32/zlib1.rc zlibbioc/src/zlib-1.2.5/zconf.h zlibbioc/src/zlib-1.2.5/zconf.h.in zlibbioc/src/zlib-1.2.5/zlib.h zlibbioc/src/zlib-1.2.5/zlib.map zlibbioc/src/zlib-1.2.5/zlib.pc zlibbioc/src/zlib-1.2.5/zlib.pc.in zlibbioc/src/zlib-1.2.5/zutil.c zlibbioc/src/zlib-1.2.5/zutil.h zlibbioc/vignettes/ zlibbioc/vignettes/UsingZlibbioc.Rnw phase `unpack' succeeded after 0.6 seconds starting phase `patch-usr-bin-file' phase `patch-usr-bin-file' succeeded after 0.0 seconds starting phase `patch-source-shebangs' patch-shebang: ./configure: changing `/bin/sh' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/sh' patch-shebang: ./src/zlib-1.2.5/configure: changing `/bin/sh' to `/gnu/store/pwcp239kjf7lnj5i4lkdzcfcxwcfyk72-bash-minimal-5.0.16/bin/sh' phase `patch-source-shebangs' succeeded after 0.0 seconds starting phase `patch-generated-file-shebangs' phase `patch-generated-file-shebangs' succeeded after 0.0 seconds starting phase `install' * installing *source* package ‘zlibbioc’ ... ** using staged installation configure: creating ./config.status config.status: creating src/Makevars ** libs mkdir -p "/gnu/store/aq46zkk2mjy3b96876zk4pmbcr8jjl33-r-zlibbioc-1.36.0/site-library/00LOCK-zlibbioc/00new/zlibbioc/include" gcc -I"/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c R_init_zlibbioc.c -o R_init_zlibbioc.o gcc -shared -L/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/lib -L/usr/local/lib -o zlibbioc.so R_init_zlibbioc.o -L/gnu/store/djxka8lxrllfbmnha6nnx9vl09hk8cz0-r-minimal-4.0.4/lib/R/lib -lR installing to /gnu/store/aq46zkk2mjy3b96876zk4pmbcr8jjl33-r-zlibbioc-1.36.0/site-library/00LOCK-zlibbioc/00new/zlibbioc/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (zlibbioc) phase `install' succeeded after 2.4 seconds starting phase `check' phase `check' succeeded after 0.0 seconds starting phase `patch-shebangs' phase `patch-shebangs' succeeded after 0.0 seconds starting phase `strip' phase `strip' succeeded after 0.0 seconds starting phase `validate-runpath' phase `validate-runpath' succeeded after 0.0 seconds starting phase `validate-documentation-location' phase `validate-documentation-location' succeeded after 0.0 seconds starting phase `delete-info-dir-file' phase `delete-info-dir-file' succeeded after 0.0 seconds starting phase `patch-dot-desktop-files' phase `patch-dot-desktop-files' succeeded after 0.0 seconds starting phase `install-license-files' installing 1 license files from '.' phase `install-license-files' succeeded after 0.0 seconds starting phase `reset-gzip-timestamps' phase `reset-gzip-timestamps' succeeded after 0.0 seconds starting phase `compress-documentation' phase `compress-documentation' succeeded after 0.0 seconds