starting phase `separate-from-pid1' build process now running as PID 18 phase `separate-from-pid1' succeeded after 0.0 seconds starting phase `set-SOURCE-DATE-EPOCH' phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds starting phase `set-paths' environment variable `PATH' set to `/gnu/store/vkkllwp723xqnw7zqi64184vq6lh0iyx-r-minimal-4.5.0/bin:/gnu/store/iz2nqgd613sqnhblhbk1rz204qksb71n-ghostscript-9.56.1/bin:/gnu/store/9ymc5fxikl8s15qi7m0ccinwscgsb4k6-texlive-local-tree-2025.2/bin:/gnu/store/m8h0hv6g549nh9n9xfjphjrzqg8g2r2w-tar-1.34/bin:/gnu/store/b3mdz7n6j9dzkyi0scdbldnzrwcc3nlg-gzip-1.13/bin:/gnu/store/2aqa6wi5y81yprflz59cjk91pgwvy48w-bzip2-1.0.8/bin:/gnu/store/k4ycd4b9zqrzxmdivjbhakjjymg8bfsv-file-5.45/bin:/gnu/store/ra6mdl923hpjw0yyrrj3j1snhibs32z0-diffutils-3.10/bin:/gnu/store/p76jj9sv007cj4hmfskjjsscy9z0vrc6-patch-2.7.6/bin:/gnu/store/p1g6q2qnp1m0iza4d09mknyqx1xspws3-findutils-4.9.0/bin:/gnu/store/mbgs4jl3vbhi6vya4p64hjfyj3739qzi-gawk-5.3.0/bin:/gnu/store/542d6rh6ci06ngcgiprnambqfws09i4f-zstd-1.5.2/bin:/gnu/store/mqb37w640rg4hx9nx00274r2kz54kc3w-sed-4.8/bin:/gnu/store/wpykxc5blf6vcw7bmqa4k21sqs44p8as-grep-3.11/bin:/gnu/store/cnv0rzdrdmlb3c43sr9n5vagjh3qn0k1-xz-5.4.5/bin:/gnu/store/yxcrwcdd7blcczlc50i6lgcnj2w7nlja-coreutils-9.1/bin:/gnu/store/c6i7ihy40368732m574lpgvygikd4ql9-make-4.4.1/bin:/gnu/store/ak41ci13apcxh5ahd8lc9rv6l7bqnwym-bash-minimal-5.1.16/bin:/gnu/store/d7ayy457nq3a42myfgqs2mc2zbx7z406-ld-wrapper-0/bin:/gnu/store/zf310q29z3apmkp3g6hck29z1d39ajly-binutils-2.41/bin:/gnu/store/xgqbv2lkh6z9x6wgyfjvcpr8paw0zd9a-gcc-11.4.0/bin:/gnu/store/g88kcslhrdmd0b5bap2f2ghj26i7jdlm-glibc-2.39/bin:/gnu/store/g88kcslhrdmd0b5bap2f2ghj26i7jdlm-glibc-2.39/sbin:/gnu/store/csjv3c7li52m9xqa7kslmx0vw3gi0c2c-texlive-libkpathsea-2025.2/bin:/gnu/store/1wjh538ll6y83y4d84gvszk06h1y3p4q-pandoc-2.19.2/bin' environment variable `R_LIBS_SITE' set to `/gnu/store/2k46v1k6x8ih43ysd2fvzfh5wfl5jrzp-r-biocgenerics-0.52.0/site-library/:/gnu/store/scfbvvmwvim2033bqxcsjwjalhl1dlm9-r-knitr-1.49/site-library/:/gnu/store/cgr3rclisalik0ixm3na1ycd0z78yps9-r-runit-0.4.33/site-library/:/gnu/store/21fqh9ma2q40m8g9lcy83a6nfdg9a1ss-r-biocmanager-1.30.25/site-library/:/gnu/store/alcf8bfgb32gaw7f8yyiwxava6w8sxpj-r-bookdown-0.42/site-library/:/gnu/store/h6rfjhyajz45q632d3sp5q7xj3p1lyxb-r-rmarkdown-2.29/site-library/:/gnu/store/ibv88v3mzv79kdlrcs9ysc9kfl5pnkw1-r-yaml-2.3.10/site-library/:/gnu/store/2lbk62l8mjhg6hwh2wp0h2iy3gl4dvz8-r-xfun-0.50/site-library/:/gnu/store/zim2yw1iyvzpx9j87xms50v3scrjwmki-r-highr-0.11/site-library/:/gnu/store/5064fvxjv30aywj9yh5m78dy6jq4d5x9-r-evaluate-1.0.3/site-library/:/gnu/store/d4x62lv74fz96821bibwq98ip1qipyl5-r-tinytex-0.54/site-library/:/gnu/store/grfv70qj5chs96dh45w13q2xy8359lgv-r-jquerylib-0.1.4/site-library/:/gnu/store/1s87z20wmwrxpk97y0y2g4rvlg9i2hwj-r-htmltools-0.5.8.1/site-library/:/gnu/store/1987qvypq21y4547i1pn8yrwhgigqp8r-r-jsonlite-1.8.9/site-library/:/gnu/store/azpkbp6gs99prhqy6wka5pk1ygmjzw57-r-fontawesome-0.5.3/site-library/:/gnu/store/6ch6id1nss54ncg9jl2wy2mdyix9rnas-r-bslib-0.9.0/site-library/:/gnu/store/6f1mxs73xvzax5jvvfzv2962gga08jgp-r-rlang-1.1.5/site-library/:/gnu/store/n75av6x1ydqyrxi8kk72zjpcv3xvrbc9-r-fastmap-1.2.0/site-library/:/gnu/store/1ay97q4pn216zfcdiaxdik5n8l0l4yiz-r-digest-0.6.37/site-library/:/gnu/store/fv0i9zd1d96qifm31q3s3agyz40k6ybn-r-base64enc-0.1-3/site-library/:/gnu/store/lkq2diqxw7mmckcjmqf3k9giacjjbqym-r-sass-0.4.9/site-library/:/gnu/store/9xkkz04vl0vblk5ysw85g3f04mzcdr27-r-mime-0.12/site-library/:/gnu/store/qcmp7p668pcpabnh060crrhkaaz6lad3-r-memoise-2.0.1/site-library/:/gnu/store/1j8l7xz7i1dwg80h3y5hs1w6swfjzm58-r-lifecycle-1.0.4/site-library/:/gnu/store/qc1kwip01wxkdrnlzjc7ni4xbsrv8907-r-cachem-1.1.0/site-library/:/gnu/store/6s5mi7l4z9yiwcsk6amnqibslg7s02ap-r-rappdirs-0.3.3/site-library/:/gnu/store/63hzvnlffxq5l70gvccwggr65lnxyl9v-r-r6-2.5.1/site-library/:/gnu/store/cmx635fn5fglp65s2i2sd1158hjiylj6-r-fs-1.6.5/site-library/:/gnu/store/f4fm949fvgxx537jmxy6mh729zbdn3aa-r-glue-1.8.0/site-library/:/gnu/store/9i8m2wbpbk5a1bx4xzriqg4zgkxny7qf-r-cli-3.6.3/site-library/' environment variable `BASH_LOADABLES_PATH' unset environment variable `C_INCLUDE_PATH' set to `/gnu/store/iz2nqgd613sqnhblhbk1rz204qksb71n-ghostscript-9.56.1/include:/gnu/store/9ymc5fxikl8s15qi7m0ccinwscgsb4k6-texlive-local-tree-2025.2/include:/gnu/store/2aqa6wi5y81yprflz59cjk91pgwvy48w-bzip2-1.0.8/include:/gnu/store/k4ycd4b9zqrzxmdivjbhakjjymg8bfsv-file-5.45/include:/gnu/store/mbgs4jl3vbhi6vya4p64hjfyj3739qzi-gawk-5.3.0/include:/gnu/store/cnv0rzdrdmlb3c43sr9n5vagjh3qn0k1-xz-5.4.5/include:/gnu/store/c6i7ihy40368732m574lpgvygikd4ql9-make-4.4.1/include:/gnu/store/zf310q29z3apmkp3g6hck29z1d39ajly-binutils-2.41/include:/gnu/store/xgqbv2lkh6z9x6wgyfjvcpr8paw0zd9a-gcc-11.4.0/include:/gnu/store/g88kcslhrdmd0b5bap2f2ghj26i7jdlm-glibc-2.39/include:/gnu/store/csjv3c7li52m9xqa7kslmx0vw3gi0c2c-texlive-libkpathsea-2025.2/include:/gnu/store/hpcf3359y90qb3c8c1x5syr0ivrj54bg-linux-libre-headers-5.15.49/include' environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/iz2nqgd613sqnhblhbk1rz204qksb71n-ghostscript-9.56.1/include:/gnu/store/9ymc5fxikl8s15qi7m0ccinwscgsb4k6-texlive-local-tree-2025.2/include:/gnu/store/2aqa6wi5y81yprflz59cjk91pgwvy48w-bzip2-1.0.8/include:/gnu/store/k4ycd4b9zqrzxmdivjbhakjjymg8bfsv-file-5.45/include:/gnu/store/mbgs4jl3vbhi6vya4p64hjfyj3739qzi-gawk-5.3.0/include:/gnu/store/cnv0rzdrdmlb3c43sr9n5vagjh3qn0k1-xz-5.4.5/include:/gnu/store/c6i7ihy40368732m574lpgvygikd4ql9-make-4.4.1/include:/gnu/store/zf310q29z3apmkp3g6hck29z1d39ajly-binutils-2.41/include:/gnu/store/xgqbv2lkh6z9x6wgyfjvcpr8paw0zd9a-gcc-11.4.0/include/c++:/gnu/store/xgqbv2lkh6z9x6wgyfjvcpr8paw0zd9a-gcc-11.4.0/include:/gnu/store/g88kcslhrdmd0b5bap2f2ghj26i7jdlm-glibc-2.39/include:/gnu/store/csjv3c7li52m9xqa7kslmx0vw3gi0c2c-texlive-libkpathsea-2025.2/include:/gnu/store/hpcf3359y90qb3c8c1x5syr0ivrj54bg-linux-libre-headers-5.15.49/include' environment variable `OBJC_INCLUDE_PATH' set to `/gnu/store/iz2nqgd613sqnhblhbk1rz204qksb71n-ghostscript-9.56.1/include:/gnu/store/9ymc5fxikl8s15qi7m0ccinwscgsb4k6-texlive-local-tree-2025.2/include:/gnu/store/2aqa6wi5y81yprflz59cjk91pgwvy48w-bzip2-1.0.8/include:/gnu/store/k4ycd4b9zqrzxmdivjbhakjjymg8bfsv-file-5.45/include:/gnu/store/mbgs4jl3vbhi6vya4p64hjfyj3739qzi-gawk-5.3.0/include:/gnu/store/cnv0rzdrdmlb3c43sr9n5vagjh3qn0k1-xz-5.4.5/include:/gnu/store/c6i7ihy40368732m574lpgvygikd4ql9-make-4.4.1/include:/gnu/store/zf310q29z3apmkp3g6hck29z1d39ajly-binutils-2.41/include:/gnu/store/xgqbv2lkh6z9x6wgyfjvcpr8paw0zd9a-gcc-11.4.0/include:/gnu/store/g88kcslhrdmd0b5bap2f2ghj26i7jdlm-glibc-2.39/include:/gnu/store/csjv3c7li52m9xqa7kslmx0vw3gi0c2c-texlive-libkpathsea-2025.2/include:/gnu/store/hpcf3359y90qb3c8c1x5syr0ivrj54bg-linux-libre-headers-5.15.49/include' environment variable `OBJCPLUS_INCLUDE_PATH' set to `/gnu/store/iz2nqgd613sqnhblhbk1rz204qksb71n-ghostscript-9.56.1/include:/gnu/store/9ymc5fxikl8s15qi7m0ccinwscgsb4k6-texlive-local-tree-2025.2/include:/gnu/store/2aqa6wi5y81yprflz59cjk91pgwvy48w-bzip2-1.0.8/include:/gnu/store/k4ycd4b9zqrzxmdivjbhakjjymg8bfsv-file-5.45/include:/gnu/store/mbgs4jl3vbhi6vya4p64hjfyj3739qzi-gawk-5.3.0/include:/gnu/store/cnv0rzdrdmlb3c43sr9n5vagjh3qn0k1-xz-5.4.5/include:/gnu/store/c6i7ihy40368732m574lpgvygikd4ql9-make-4.4.1/include:/gnu/store/zf310q29z3apmkp3g6hck29z1d39ajly-binutils-2.41/include:/gnu/store/xgqbv2lkh6z9x6wgyfjvcpr8paw0zd9a-gcc-11.4.0/include/c++:/gnu/store/xgqbv2lkh6z9x6wgyfjvcpr8paw0zd9a-gcc-11.4.0/include:/gnu/store/g88kcslhrdmd0b5bap2f2ghj26i7jdlm-glibc-2.39/include:/gnu/store/csjv3c7li52m9xqa7kslmx0vw3gi0c2c-texlive-libkpathsea-2025.2/include:/gnu/store/hpcf3359y90qb3c8c1x5syr0ivrj54bg-linux-libre-headers-5.15.49/include' environment variable `LIBRARY_PATH' set to `/gnu/store/vkkllwp723xqnw7zqi64184vq6lh0iyx-r-minimal-4.5.0/lib:/gnu/store/iz2nqgd613sqnhblhbk1rz204qksb71n-ghostscript-9.56.1/lib:/gnu/store/9ymc5fxikl8s15qi7m0ccinwscgsb4k6-texlive-local-tree-2025.2/lib:/gnu/store/2aqa6wi5y81yprflz59cjk91pgwvy48w-bzip2-1.0.8/lib:/gnu/store/k4ycd4b9zqrzxmdivjbhakjjymg8bfsv-file-5.45/lib:/gnu/store/mbgs4jl3vbhi6vya4p64hjfyj3739qzi-gawk-5.3.0/lib:/gnu/store/cnv0rzdrdmlb3c43sr9n5vagjh3qn0k1-xz-5.4.5/lib:/gnu/store/zf310q29z3apmkp3g6hck29z1d39ajly-binutils-2.41/lib:/gnu/store/g88kcslhrdmd0b5bap2f2ghj26i7jdlm-glibc-2.39/lib:/gnu/store/3wg51p14zipq2rl2k59pw7i8hirbdnb5-glibc-2.39-static/lib:/gnu/store/csjv3c7li52m9xqa7kslmx0vw3gi0c2c-texlive-libkpathsea-2025.2/lib' environment variable `GUIX_LOCPATH' set to `/gnu/store/g88kcslhrdmd0b5bap2f2ghj26i7jdlm-glibc-2.39/lib/locale' environment variable `TZDIR' unset environment variable `GUIX_TEXMF' set to `/gnu/store/9ymc5fxikl8s15qi7m0ccinwscgsb4k6-texlive-local-tree-2025.2/share/texmf-dist:/gnu/store/csjv3c7li52m9xqa7kslmx0vw3gi0c2c-texlive-libkpathsea-2025.2/share/texmf-dist' phase `set-paths' succeeded after 0.0 seconds starting phase `install-locale' using 'C.UTF-8' locale for category "LC_ALL" phase `install-locale' succeeded after 0.0 seconds starting phase `unpack' BiocStyle/DESCRIPTION BiocStyle/MD5 BiocStyle/NAMESPACE BiocStyle/NEWS BiocStyle/R/ BiocStyle/R/BiocStyle-defunct.R BiocStyle/R/BiocStyle-imports.R BiocStyle/R/auth_affil.R BiocStyle/R/html_document.R BiocStyle/R/html_fragment.R BiocStyle/R/knitr_options.R BiocStyle/R/latex.R BiocStyle/R/markdown.R BiocStyle/R/md_document.R BiocStyle/R/pdf_document.R BiocStyle/R/rmd_common.R BiocStyle/R/use_vignette.R BiocStyle/R/utils.R BiocStyle/R/zzz.R BiocStyle/build/ BiocStyle/build/vignette.rds BiocStyle/inst/ BiocStyle/inst/doc/ BiocStyle/inst/doc/AuthoringRmdVignettes.R BiocStyle/inst/doc/AuthoringRmdVignettes.Rmd BiocStyle/inst/doc/AuthoringRmdVignettes.html BiocStyle/inst/doc/LatexStyle2.R BiocStyle/inst/doc/LatexStyle2.Rnw BiocStyle/inst/doc/LatexStyle2.pdf BiocStyle/inst/resources/ BiocStyle/inst/resources/fragment.html BiocStyle/inst/resources/html/ BiocStyle/inst/resources/html/addTocAccessibility.js BiocStyle/inst/resources/html/bioconductor.css BiocStyle/inst/resources/html/codefolding.js BiocStyle/inst/resources/html/setDocumentTitleClass.js BiocStyle/inst/resources/html/setExternalLinksTarget.js BiocStyle/inst/resources/md/ BiocStyle/inst/resources/md/toc.template BiocStyle/inst/resources/tex/ BiocStyle/inst/resources/tex/Bioconductor.sty BiocStyle/inst/resources/tex/highlighting-macros.def BiocStyle/inst/resources/tex/unsrturl.bst BiocStyle/inst/rmarkdown/ BiocStyle/inst/rmarkdown/templates/ BiocStyle/inst/rmarkdown/templates/html_document/ BiocStyle/inst/rmarkdown/templates/html_document/skeleton/ BiocStyle/inst/rmarkdown/templates/html_document/skeleton/skeleton.Rmd BiocStyle/inst/rmarkdown/templates/html_document/template.yaml BiocStyle/inst/rmarkdown/templates/pdf_document/ BiocStyle/inst/rmarkdown/templates/pdf_document/skeleton/ BiocStyle/inst/rmarkdown/templates/pdf_document/skeleton/skeleton.Rmd BiocStyle/inst/rmarkdown/templates/pdf_document/template.yaml BiocStyle/inst/rmd/ BiocStyle/inst/rmd/latex/ BiocStyle/inst/rmd/latex/default-1.14.tex BiocStyle/inst/rmd/latex/default-1.15.2.tex BiocStyle/inst/rmd/latex/default-1.17.0.2.tex BiocStyle/inst/rmd/latex/default-2.8.tex BiocStyle/inst/rmd/latex/default.latex BiocStyle/inst/rmd/latex/default.tex BiocStyle/inst/themes/ BiocStyle/inst/themes/default.css BiocStyle/inst/unitTests/ BiocStyle/inst/unitTests/cases/ BiocStyle/inst/unitTests/cases/maketitle_test_1.Rnw BiocStyle/inst/unitTests/cases/maketitle_test_2.Rnw BiocStyle/inst/unitTests/cases/maketitle_test_3.Rnw BiocStyle/inst/unitTests/cases/maketitle_test_4.Rnw BiocStyle/inst/unitTests/cases/maketitle_test_5.Rnw BiocStyle/inst/unitTests/test_figure_options.R BiocStyle/inst/unitTests/test_latex.R BiocStyle/inst/unitTests/test_pdf_document.R BiocStyle/inst/unitTests/test_sidenotes.R BiocStyle/man/ BiocStyle/man/BiocStyle-defunct.Rd BiocStyle/man/helpers.Rd BiocStyle/man/html_document.Rd BiocStyle/man/latex.Rd BiocStyle/man/macros.Rd BiocStyle/man/markdown.Rd BiocStyle/man/md_document.Rd BiocStyle/man/output.Rd BiocStyle/man/pdf_document.Rd BiocStyle/man/use_vignette.Rd BiocStyle/tests/ BiocStyle/tests/run_tests.R BiocStyle/vignettes/ BiocStyle/vignettes/AuthoringRmdVignettes.Rmd BiocStyle/vignettes/Bioc.bib BiocStyle/vignettes/LatexStyle2.Rnw phase `unpack' succeeded after 0.0 seconds starting phase `patch-usr-bin-file' phase `patch-usr-bin-file' succeeded after 0.0 seconds starting phase `patch-source-shebangs' phase `patch-source-shebangs' succeeded after 0.0 seconds starting phase `patch-generated-file-shebangs' phase `patch-generated-file-shebangs' succeeded after 0.0 seconds starting phase `install' * installing *source* package ‘BiocStyle’ ... ** this is package ‘BiocStyle’ version ‘2.34.0’ ** package ‘BiocStyle’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** tests ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocStyle) phase `install' succeeded after 2.8 seconds starting phase `check' Running specific tests for package ‘BiocStyle’ Running ‘run_tests.R’ Error: running the tests in ‘run_tests.R’ failed Tests failed, dumping logs. --- ./BiocStyle-tests/run_tests.Rout.fail ----------------------------------- R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: i686-unknown-linux-gnu (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage("BiocStyle") Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories The magick package is required to crop "/tmp/guix-build-r-biocstyle-2.34.0.drv-0/RtmpG0T5BD/file34f46d5e17b_files/figure-html/plot-1.png" but not available. The magick package is required to crop "/tmp/guix-build-r-biocstyle-2.34.0.drv-0/RtmpG0T5BD/file34f46d5e17b_files/figure-html/small-1.png" but not available. The magick package is required to crop "/tmp/guix-build-r-biocstyle-2.34.0.drv-0/RtmpG0T5BD/file34f46d5e17b_files/figure-html/wide-1.png" but not available. Timing stopped at: 0.737 0.13 11.23 Error : pandoc document conversion failed with error 139 In addition: Warning messages: 1: In file(con, "r") : URL 'https://bioconductor.org/config.yaml': status was 'Couldn't resolve host name' 2: In file(con, "r") : URL 'http://bioconductor.org/config.yaml': status was 'Couldn't resolve host name' Writing to file maketitle_test_1.tex Processing code chunks with options ... 1 : keep.source term tex (label = style, maketitle_test_1.Rnw:5) You can now run (pdf)latex on ‘maketitle_test_1.tex’ Writing to file maketitle_test_2.tex Processing code chunks with options ... 1 : keep.source term tex (label = style, maketitle_test_2.Rnw:5) You can now run (pdf)latex on ‘maketitle_test_2.tex’ Writing to file maketitle_test_3.tex Processing code chunks with options ... 1 : keep.source term tex (label = style, maketitle_test_3.Rnw:5) You can now run (pdf)latex on ‘maketitle_test_3.tex’ Writing to file maketitle_test_4.tex Processing code chunks with options ... 1 : keep.source term tex (label = style, maketitle_test_4.Rnw:5) You can now run (pdf)latex on ‘maketitle_test_4.tex’ Writing to file maketitle_test_5.tex Processing code chunks with options ... 1 : keep.source term tex (label = style, maketitle_test_5.Rnw:5) You can now run (pdf)latex on ‘maketitle_test_5.tex’ processing file: file34f74721819.Rmd 1/8 2/8 [plot] 3/8 4/8 [small] 5/8 6/8 [wide] 7/8 8/8 [sessionInfo] output file: file34f74721819.knit.md /gnu/store/1wjh538ll6y83y4d84gvszk06h1y3p4q-pandoc-2.19.2/bin/pandoc +RTS -K512m -RTS file34f74721819.knit.md --to latex --from markdown+autolink_bare_uris+tex_math_single_backslash --output file34f74721819.tex --lua-filter /gnu/store/alcf8bfgb32gaw7f8yyiwxava6w8sxpj-r-bookdown-0.42/site-library/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /gnu/store/h6rfjhyajz45q632d3sp5q7xj3p1lyxb-r-rmarkdown-2.29/site-library/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /gnu/store/h6rfjhyajz45q632d3sp5q7xj3p1lyxb-r-rmarkdown-2.29/site-library/rmarkdown/rmarkdown/lua/latex-div.lua --embed-resources --standalone --table-of-contents --toc-depth 2 --number-sections --highlight-style tango --pdf-engine pdflatex --include-in-header /tmp/guix-build-r-biocstyle-2.34.0.drv-0/RtmpG0T5BD/34f5a4c7000.tex --variable graphics --wrap preserve --variable subparagraph --template /tmp/guix-build-r-biocstyle-2.34.0.drv-0/RtmpG0T5BD/BiocStyle/template.tex --variable tables=yes --standalone --variable 'compact-title:yes' Warning: LaTeX Warning: You have requested package `/gnu/store/24zc8w0yi0jzy7bhb927w3wy1z3pxwsi-r-biocstyle-2.34.0/site-library/BiocStyle/resources/tex/Bioconductor', Warning: but the package provides `Bioconductor'. Output created: file34f74721819.pdf RUNIT TEST PROTOCOL -- Sat May 3 20:39:11 2025 *********************************************** Number of test functions: 3 Number of errors: 1 Number of failures: 0 1 Test Suite : BiocStyle RUnit Tests - 3 test functions, 1 error, 0 failures ERROR in test_default_figure_options: Error : pandoc document conversion failed with error 139 Test files with failing tests test_figure_options.R test_default_figure_options Error in BiocGenerics:::testPackage("BiocStyle") : unit tests failed for package BiocStyle Execution halted error: in phase 'check': uncaught exception: %exception #<&invoke-error program: "R" arguments: ("quit(status=tools::testInstalledPackage(\"BiocStyle\", lib.loc = \"/gnu/store/24zc8w0yi0jzy7bhb927w3wy1z3pxwsi-r-biocstyle-2.34.0/site-library/\", errorsAreFatal=TRUE, types=c(\"tests\", \"vignettes\")))" "--no-save" "--slave") exit-status: 1 term-signal: #f stop-signal: #f> phase `check' failed after 20.5 seconds command "R" "quit(status=tools::testInstalledPackage(\"BiocStyle\", lib.loc = \"/gnu/store/24zc8w0yi0jzy7bhb927w3wy1z3pxwsi-r-biocstyle-2.34.0/site-library/\", errorsAreFatal=TRUE, types=c(\"tests\", \"vignettes\")))" "--no-save" "--slave" failed with status 1 build process 18 exited with status 256