WARNING: (guile-user): imported module (guix build utils) overrides core binding `delete' starting phase `separate-from-pid1' build process now running as PID 18 phase `separate-from-pid1' succeeded after 0.0 seconds starting phase `set-SOURCE-DATE-EPOCH' phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds starting phase `set-paths' environment variable `PATH' set to `/gnu/store/bywf6y8624cnzp25i18yc0fzyab2dvrc-meson-1.5.2/bin:/gnu/store/8jp28jp07hxwa1nlfm6ic1cciw4rmi58-ninja-1.11.1/bin:/gnu/store/7mpqs8yga7490iymympcpk747g5nz6c8-bash-tap-1.0.2/bin:/gnu/store/qjy4ln3i9y6m896qsv0n80nny6khv9zg-bc-1.07.1/bin:/gnu/store/nsvwawc6aqyw368934szjb9kmv8kci0i-grep-3.11/bin:/gnu/store/42hlljlvs7i60l32mc0k55633c6910bh-parallel-20250122/bin:/gnu/store/din1k9np84zdyxad7r05ap1bicjk0fvs-perl-5.36.0/bin:/gnu/store/p6a690h4ipwmc000q61fkc6fab6412va-pkg-config-0.29.2/bin:/gnu/store/nlk74rb760n13nfmgm9lrpbd3jsd3r2n-python-3.10.7/bin:/gnu/store/6b9aj3y1nfiz3cp0kln23g8dyjhvbm11-samtools-1.19/bin:/gnu/store/vdnm5399vks7d5nj6r7i3p17i6wm03b2-fastahack-1.0.0/bin:/gnu/store/b5v4zb7m95f5p9l41dwkf2158mi83c2n-htslib-1.19/bin:/gnu/store/3gsjiswwwlylhl12zls8smx8z9kdrqq2-smithwaterman-0.0.0-2.2610e25/bin:/gnu/store/7bi5dywbjn846n1qi9dr31935wlhay0i-tabixpp-1.1.2/bin:/gnu/store/0d8pvybd2x45l5zdqr2wfa3jzpn8h56f-vcflib-1.0.9/bin:/gnu/store/6a8nzjdrzqhi6ai3mz34fx4p938rihsy-tar-1.34/bin:/gnu/store/nz34ydn14l1r1mwqr0nwv207qn179db7-gzip-1.13/bin:/gnu/store/hfcal1gx8g4cyvrgfz9pik2y8y5mkvx1-bzip2-1.0.8/bin:/gnu/store/amzrvv5bgxpzknl3gg4k7dfvcln76q4b-file-5.45/bin:/gnu/store/f8i87amlqmpxvca9damyf3925l7k67rb-diffutils-3.10/bin:/gnu/store/1wda77kxj74bz7icwj7zaiwamnlf8qdh-patch-2.7.6/bin:/gnu/store/kkr4i9hx0fibrdp4haqxli3qwd0wqsxp-findutils-4.9.0/bin:/gnu/store/alksjnrf32dx2p6w25ifk6pir4rj4hxl-gawk-5.3.0/bin:/gnu/store/k1zvdjzr4zg47mh5rm41d7lpkg5ydy5y-zstd-1.5.2/bin:/gnu/store/wx7cvwj9vi4wsc1a06vq1pkgy3k1flpw-sed-4.8/bin:/gnu/store/bhz72a51ixagcjbmmswb98bnkbb6l327-grep-3.11/bin:/gnu/store/0jhdrfxfsqvss9273d2pvgqxyrmsdf66-xz-5.4.5/bin:/gnu/store/y6w4s09jcvcc0as357d2vcm60c68agph-coreutils-9.1/bin:/gnu/store/5i82l9hfcz3iqshsb7ys14088lj5n39q-make-4.4.1/bin:/gnu/store/h1ap2ldl46a57fa3978w6pdbrq3zhzks-bash-minimal-5.1.16/bin:/gnu/store/fy0b225yfj0935gklyavxw81aak0zzc4-ld-wrapper-0/bin:/gnu/store/03i3civrmcfpc0212jdir7hvgz776iv1-binutils-2.41/bin:/gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/bin:/gnu/store/hqpnggqlr3r9l6v2wpc9s98cfpxqksql-glibc-2.39/bin:/gnu/store/hqpnggqlr3r9l6v2wpc9s98cfpxqksql-glibc-2.39/sbin' environment variable `PERL5LIB' set to `/gnu/store/din1k9np84zdyxad7r05ap1bicjk0fvs-perl-5.36.0/lib/perl5/site_perl' environment variable `PKG_CONFIG_PATH' set to `/gnu/store/nlk74rb760n13nfmgm9lrpbd3jsd3r2n-python-3.10.7/lib/pkgconfig:/gnu/store/6bjxvwlj57bgscyndm77wmxp4lq2l7kc-simde-0.8.2/lib/pkgconfig:/gnu/store/vdnm5399vks7d5nj6r7i3p17i6wm03b2-fastahack-1.0.0/lib/pkgconfig:/gnu/store/b5v4zb7m95f5p9l41dwkf2158mi83c2n-htslib-1.19/lib/pkgconfig:/gnu/store/3gsjiswwwlylhl12zls8smx8z9kdrqq2-smithwaterman-0.0.0-2.2610e25/lib/pkgconfig:/gnu/store/7bi5dywbjn846n1qi9dr31935wlhay0i-tabixpp-1.1.2/lib/pkgconfig:/gnu/store/0d8pvybd2x45l5zdqr2wfa3jzpn8h56f-vcflib-1.0.9/lib/pkgconfig:/gnu/store/amzrvv5bgxpzknl3gg4k7dfvcln76q4b-file-5.45/lib/pkgconfig:/gnu/store/0jhdrfxfsqvss9273d2pvgqxyrmsdf66-xz-5.4.5/lib/pkgconfig:/gnu/store/6hmdzziaq3nvqkc6l71s5pwk6r6qq13x-zlib-1.3/lib/pkgconfig:/gnu/store/zwzcrk1f06cx5lkafvfy5v5aa28yqsn0-wfa2-lib-2.3.3/lib/pkgconfig' environment variable `GUIX_PYTHONPATH' set to `/gnu/store/bywf6y8624cnzp25i18yc0fzyab2dvrc-meson-1.5.2/lib/python3.10/site-packages:/gnu/store/nlk74rb760n13nfmgm9lrpbd3jsd3r2n-python-3.10.7/lib/python3.10/site-packages' environment variable `PYTHONTZPATH' unset environment variable `BASH_LOADABLES_PATH' unset environment variable `C_INCLUDE_PATH' set to `/gnu/store/nlk74rb760n13nfmgm9lrpbd3jsd3r2n-python-3.10.7/include:/gnu/store/6bjxvwlj57bgscyndm77wmxp4lq2l7kc-simde-0.8.2/include:/gnu/store/vdnm5399vks7d5nj6r7i3p17i6wm03b2-fastahack-1.0.0/include:/gnu/store/b5v4zb7m95f5p9l41dwkf2158mi83c2n-htslib-1.19/include:/gnu/store/3gsjiswwwlylhl12zls8smx8z9kdrqq2-smithwaterman-0.0.0-2.2610e25/include:/gnu/store/7bi5dywbjn846n1qi9dr31935wlhay0i-tabixpp-1.1.2/include:/gnu/store/0d8pvybd2x45l5zdqr2wfa3jzpn8h56f-vcflib-1.0.9/include:/gnu/store/hfcal1gx8g4cyvrgfz9pik2y8y5mkvx1-bzip2-1.0.8/include:/gnu/store/amzrvv5bgxpzknl3gg4k7dfvcln76q4b-file-5.45/include:/gnu/store/alksjnrf32dx2p6w25ifk6pir4rj4hxl-gawk-5.3.0/include:/gnu/store/0jhdrfxfsqvss9273d2pvgqxyrmsdf66-xz-5.4.5/include:/gnu/store/5i82l9hfcz3iqshsb7ys14088lj5n39q-make-4.4.1/include:/gnu/store/03i3civrmcfpc0212jdir7hvgz776iv1-binutils-2.41/include:/gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include:/gnu/store/hqpnggqlr3r9l6v2wpc9s98cfpxqksql-glibc-2.39/include:/gnu/store/6hmdzziaq3nvqkc6l71s5pwk6r6qq13x-zlib-1.3/include:/gnu/store/n1x9x5mvf1vhhpgxb0pghhga9rs8j928-htscodecs-1.6.0/include:/gnu/store/zwzcrk1f06cx5lkafvfy5v5aa28yqsn0-wfa2-lib-2.3.3/include:/gnu/store/hs72i1aq263cgprjdindfqsi12ivz49d-linux-libre-headers-5.15.49/include' environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/nlk74rb760n13nfmgm9lrpbd3jsd3r2n-python-3.10.7/include:/gnu/store/6bjxvwlj57bgscyndm77wmxp4lq2l7kc-simde-0.8.2/include:/gnu/store/vdnm5399vks7d5nj6r7i3p17i6wm03b2-fastahack-1.0.0/include:/gnu/store/b5v4zb7m95f5p9l41dwkf2158mi83c2n-htslib-1.19/include:/gnu/store/3gsjiswwwlylhl12zls8smx8z9kdrqq2-smithwaterman-0.0.0-2.2610e25/include:/gnu/store/7bi5dywbjn846n1qi9dr31935wlhay0i-tabixpp-1.1.2/include:/gnu/store/0d8pvybd2x45l5zdqr2wfa3jzpn8h56f-vcflib-1.0.9/include:/gnu/store/hfcal1gx8g4cyvrgfz9pik2y8y5mkvx1-bzip2-1.0.8/include:/gnu/store/amzrvv5bgxpzknl3gg4k7dfvcln76q4b-file-5.45/include:/gnu/store/alksjnrf32dx2p6w25ifk6pir4rj4hxl-gawk-5.3.0/include:/gnu/store/0jhdrfxfsqvss9273d2pvgqxyrmsdf66-xz-5.4.5/include:/gnu/store/5i82l9hfcz3iqshsb7ys14088lj5n39q-make-4.4.1/include:/gnu/store/03i3civrmcfpc0212jdir7hvgz776iv1-binutils-2.41/include:/gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++:/gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include:/gnu/store/hqpnggqlr3r9l6v2wpc9s98cfpxqksql-glibc-2.39/include:/gnu/store/6hmdzziaq3nvqkc6l71s5pwk6r6qq13x-zlib-1.3/include:/gnu/store/n1x9x5mvf1vhhpgxb0pghhga9rs8j928-htscodecs-1.6.0/include:/gnu/store/zwzcrk1f06cx5lkafvfy5v5aa28yqsn0-wfa2-lib-2.3.3/include:/gnu/store/hs72i1aq263cgprjdindfqsi12ivz49d-linux-libre-headers-5.15.49/include' environment variable `OBJC_INCLUDE_PATH' set to `/gnu/store/nlk74rb760n13nfmgm9lrpbd3jsd3r2n-python-3.10.7/include:/gnu/store/6bjxvwlj57bgscyndm77wmxp4lq2l7kc-simde-0.8.2/include:/gnu/store/vdnm5399vks7d5nj6r7i3p17i6wm03b2-fastahack-1.0.0/include:/gnu/store/b5v4zb7m95f5p9l41dwkf2158mi83c2n-htslib-1.19/include:/gnu/store/3gsjiswwwlylhl12zls8smx8z9kdrqq2-smithwaterman-0.0.0-2.2610e25/include:/gnu/store/7bi5dywbjn846n1qi9dr31935wlhay0i-tabixpp-1.1.2/include:/gnu/store/0d8pvybd2x45l5zdqr2wfa3jzpn8h56f-vcflib-1.0.9/include:/gnu/store/hfcal1gx8g4cyvrgfz9pik2y8y5mkvx1-bzip2-1.0.8/include:/gnu/store/amzrvv5bgxpzknl3gg4k7dfvcln76q4b-file-5.45/include:/gnu/store/alksjnrf32dx2p6w25ifk6pir4rj4hxl-gawk-5.3.0/include:/gnu/store/0jhdrfxfsqvss9273d2pvgqxyrmsdf66-xz-5.4.5/include:/gnu/store/5i82l9hfcz3iqshsb7ys14088lj5n39q-make-4.4.1/include:/gnu/store/03i3civrmcfpc0212jdir7hvgz776iv1-binutils-2.41/include:/gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include:/gnu/store/hqpnggqlr3r9l6v2wpc9s98cfpxqksql-glibc-2.39/include:/gnu/store/6hmdzziaq3nvqkc6l71s5pwk6r6qq13x-zlib-1.3/include:/gnu/store/n1x9x5mvf1vhhpgxb0pghhga9rs8j928-htscodecs-1.6.0/include:/gnu/store/zwzcrk1f06cx5lkafvfy5v5aa28yqsn0-wfa2-lib-2.3.3/include:/gnu/store/hs72i1aq263cgprjdindfqsi12ivz49d-linux-libre-headers-5.15.49/include' environment variable `OBJCPLUS_INCLUDE_PATH' set to `/gnu/store/nlk74rb760n13nfmgm9lrpbd3jsd3r2n-python-3.10.7/include:/gnu/store/6bjxvwlj57bgscyndm77wmxp4lq2l7kc-simde-0.8.2/include:/gnu/store/vdnm5399vks7d5nj6r7i3p17i6wm03b2-fastahack-1.0.0/include:/gnu/store/b5v4zb7m95f5p9l41dwkf2158mi83c2n-htslib-1.19/include:/gnu/store/3gsjiswwwlylhl12zls8smx8z9kdrqq2-smithwaterman-0.0.0-2.2610e25/include:/gnu/store/7bi5dywbjn846n1qi9dr31935wlhay0i-tabixpp-1.1.2/include:/gnu/store/0d8pvybd2x45l5zdqr2wfa3jzpn8h56f-vcflib-1.0.9/include:/gnu/store/hfcal1gx8g4cyvrgfz9pik2y8y5mkvx1-bzip2-1.0.8/include:/gnu/store/amzrvv5bgxpzknl3gg4k7dfvcln76q4b-file-5.45/include:/gnu/store/alksjnrf32dx2p6w25ifk6pir4rj4hxl-gawk-5.3.0/include:/gnu/store/0jhdrfxfsqvss9273d2pvgqxyrmsdf66-xz-5.4.5/include:/gnu/store/5i82l9hfcz3iqshsb7ys14088lj5n39q-make-4.4.1/include:/gnu/store/03i3civrmcfpc0212jdir7hvgz776iv1-binutils-2.41/include:/gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++:/gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include:/gnu/store/hqpnggqlr3r9l6v2wpc9s98cfpxqksql-glibc-2.39/include:/gnu/store/6hmdzziaq3nvqkc6l71s5pwk6r6qq13x-zlib-1.3/include:/gnu/store/n1x9x5mvf1vhhpgxb0pghhga9rs8j928-htscodecs-1.6.0/include:/gnu/store/zwzcrk1f06cx5lkafvfy5v5aa28yqsn0-wfa2-lib-2.3.3/include:/gnu/store/hs72i1aq263cgprjdindfqsi12ivz49d-linux-libre-headers-5.15.49/include' environment variable `LIBRARY_PATH' set to `/gnu/store/bywf6y8624cnzp25i18yc0fzyab2dvrc-meson-1.5.2/lib:/gnu/store/din1k9np84zdyxad7r05ap1bicjk0fvs-perl-5.36.0/lib:/gnu/store/nlk74rb760n13nfmgm9lrpbd3jsd3r2n-python-3.10.7/lib:/gnu/store/6bjxvwlj57bgscyndm77wmxp4lq2l7kc-simde-0.8.2/lib:/gnu/store/g3yr6jyx8biiwfl8yh8rj24c84kz4cy5-test-simple-bash-src-checkout/lib:/gnu/store/vdnm5399vks7d5nj6r7i3p17i6wm03b2-fastahack-1.0.0/lib:/gnu/store/b5v4zb7m95f5p9l41dwkf2158mi83c2n-htslib-1.19/lib:/gnu/store/3gsjiswwwlylhl12zls8smx8z9kdrqq2-smithwaterman-0.0.0-2.2610e25/lib:/gnu/store/7bi5dywbjn846n1qi9dr31935wlhay0i-tabixpp-1.1.2/lib:/gnu/store/0d8pvybd2x45l5zdqr2wfa3jzpn8h56f-vcflib-1.0.9/lib:/gnu/store/hfcal1gx8g4cyvrgfz9pik2y8y5mkvx1-bzip2-1.0.8/lib:/gnu/store/amzrvv5bgxpzknl3gg4k7dfvcln76q4b-file-5.45/lib:/gnu/store/alksjnrf32dx2p6w25ifk6pir4rj4hxl-gawk-5.3.0/lib:/gnu/store/0jhdrfxfsqvss9273d2pvgqxyrmsdf66-xz-5.4.5/lib:/gnu/store/03i3civrmcfpc0212jdir7hvgz776iv1-binutils-2.41/lib:/gnu/store/hqpnggqlr3r9l6v2wpc9s98cfpxqksql-glibc-2.39/lib:/gnu/store/diy4fnn93542sdrcgnfqkkwxp50bbmi7-glibc-2.39-static/lib:/gnu/store/6hmdzziaq3nvqkc6l71s5pwk6r6qq13x-zlib-1.3/lib:/gnu/store/n1x9x5mvf1vhhpgxb0pghhga9rs8j928-htscodecs-1.6.0/lib:/gnu/store/zwzcrk1f06cx5lkafvfy5v5aa28yqsn0-wfa2-lib-2.3.3/lib' environment variable `GUIX_LOCPATH' set to `/gnu/store/hqpnggqlr3r9l6v2wpc9s98cfpxqksql-glibc-2.39/lib/locale' environment variable `TZDIR' unset phase `set-paths' succeeded after 0.0 seconds starting phase `install-locale' using 'C.UTF-8' locale for category "LC_ALL" phase `install-locale' succeeded after 0.0 seconds starting phase `unpack' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/RELEASE-NOTES.md' -> `./RELEASE-NOTES.md' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/LICENSE' -> `./LICENSE' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/.gitignore' -> `./.gitignore' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/meson_options.txt' -> `./meson_options.txt' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/meson.build' -> `./meson.build' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/README.md' -> `./README.md' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/.travis.yml' -> `./.travis.yml' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/CMakeLists-do-not-use.txt' -> `./CMakeLists-do-not-use.txt' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/TODO.md' -> `./TODO.md' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/.gitmodules' -> `./.gitmodules' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/guix.scm' -> `./guix.scm' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/.github/workflows/issue-tracker-bot.yaml' -> `./.github/workflows/issue-tracker-bot.yaml' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/.github/workflows/support-tracker-bot.yaml' -> `./.github/workflows/support-tracker-bot.yaml' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/.github/workflows/ci_test.yml' -> `./.github/workflows/ci_test.yml' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/.github/workflows/main.yml' -> `./.github/workflows/main.yml' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/.github/ISSUE_TEMPLATE/bug_report.md' -> `./.github/ISSUE_TEMPLATE/bug_report.md' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/Product.h' -> `./src/Product.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/LeftAlign.h' -> `./src/LeftAlign.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/Genotype.cpp' -> `./src/Genotype.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/SegfaultHandler.h' -> `./src/SegfaultHandler.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/Allele.h' -> `./src/Allele.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/Contamination.cpp' -> `./src/Contamination.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/ResultData.cpp' -> `./src/ResultData.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/Parameters.h' -> `./src/Parameters.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/Marginals.cpp' -> `./src/Marginals.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/Bias.h' -> `./src/Bias.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/AlleleParser.h' -> `./src/AlleleParser.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/AlleleParser.cpp' -> `./src/AlleleParser.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/Dirichlet.h' -> `./src/Dirichlet.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/DataLikelihood.cpp' -> `./src/DataLikelihood.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/.gitignore' -> `./src/.gitignore' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/BedReader.h' -> `./src/BedReader.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/Result.cpp' -> `./src/Result.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/Ewens.cpp' -> `./src/Ewens.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/Multinomial.h' -> `./src/Multinomial.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/Result.h' -> `./src/Result.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/Multinomial.cpp' -> `./src/Multinomial.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/Sum.h' -> `./src/Sum.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/ResultData.h' -> `./src/ResultData.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/version_git.h' -> `./src/version_git.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/SegfaultHandler.cpp' -> `./src/SegfaultHandler.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/Marginals.h' -> `./src/Marginals.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/CNV.cpp' -> `./src/CNV.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/Sample.cpp' -> `./src/Sample.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/IndelAllele.cpp' -> `./src/IndelAllele.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/Bias.cpp' -> `./src/Bias.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/LargeFileSupport.h' -> `./src/LargeFileSupport.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/NonCall.h' -> `./src/NonCall.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/BedReader.cpp' -> `./src/BedReader.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/DataLikelihood.h' -> `./src/DataLikelihood.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/Contamination.h' -> `./src/Contamination.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/FBFasta.cpp' -> `./src/FBFasta.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/NonCall.cpp' -> `./src/NonCall.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/Ewens.h' -> `./src/Ewens.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/Dirichlet.cpp' -> `./src/Dirichlet.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/Logging.h' -> `./src/Logging.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/Parameters.cpp' -> `./src/Parameters.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/CNV.h' -> `./src/CNV.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/LeftAlign.cpp' -> `./src/LeftAlign.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/FBFasta.h' -> `./src/FBFasta.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/bamleftalign.cpp' -> `./src/bamleftalign.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/freebayes.cpp' -> `./src/freebayes.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/Utility.h' -> `./src/Utility.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/Utility.cpp' -> `./src/Utility.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/Genotype.h' -> `./src/Genotype.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/TryCatch.h' -> `./src/TryCatch.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/Sample.h' -> `./src/Sample.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/Allele.cpp' -> `./src/Allele.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/src/IndelAllele.h' -> `./src/IndelAllele.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/examples/snakemake-freebayes-parallel.smk' -> `./examples/snakemake-freebayes-parallel.smk' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/examples/freebayes-env.yaml' -> `./examples/freebayes-env.yaml' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/examples/pipeline.sh' -> `./examples/pipeline.sh' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/paper/omni_errors.png' -> `./paper/omni_errors.png' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/paper/miseq.png' -> `./paper/miseq.png' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/paper/haplotype_calling.png' -> `./paper/haplotype_calling.png' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/paper/.gitignore' -> `./paper/.gitignore' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/paper/references.bib' -> `./paper/references.bib' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/paper/1000G_performance_comparison.png' -> `./paper/1000G_performance_comparison.png' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/paper/low_frequency_sensitivity.png' -> `./paper/low_frequency_sensitivity.png' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/paper/100samples10x_0_25_both.png' -> `./paper/100samples10x_0_25_both.png' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/paper/genome_research.bst' -> `./paper/genome_research.bst' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/paper/Makefile' -> `./paper/Makefile' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/paper/main.tex' -> `./paper/main.tex' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/paper/indel_error.png' -> `./paper/indel_error.png' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/runner.sh' -> `./test/runner.sh' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/splice/1:883884-887618.bam' -> `./test/splice/1:883884-887618.bam' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/splice/1:883884-887618.fa.fai' -> `./test/splice/1:883884-887618.fa.fai' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/splice/1:883884-887618.fa' -> `./test/splice/1:883884-887618.fa' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/splice/1:883884-887618.bam.bai' -> `./test/splice/1:883884-887618.bam.bai' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/performance/benchmark.md' -> `./test/performance/benchmark.md' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/data/test.alt' -> `./test/data/test.alt' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/data/test.vcf' -> `./test/data/test.vcf' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/data/test.ref' -> `./test/data/test.ref' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/data/test.ref.fai' -> `./test/data/test.ref.fai' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/data/test.bam.bai' -> `./test/data/test.bam.bai' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/data/test.bam' -> `./test/data/test.bam' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/data/targets.bed' -> `./test/data/targets.bed' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/data/test.bed' -> `./test/data/test.bed' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/regression/README.md' -> `./test/regression/README.md' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/regression/NA12878.chr22.tiny.vcf' -> `./test/regression/NA12878.chr22.tiny.vcf' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/t/02_multi_bam.t' -> `./test/t/02_multi_bam.t' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/t/01_call_variants.t' -> `./test/t/01_call_variants.t' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/t/00_region_and_target_handling.t' -> `./test/t/00_region_and_target_handling.t' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/t/01b_call_variants.t' -> `./test/t/01b_call_variants.t' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/t/03_reference_bases.t' -> `./test/t/03_reference_bases.t' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/tiny/q_spiked.vcf.gz.tbi' -> `./test/tiny/q_spiked.vcf.gz.tbi' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/tiny/q.vcf.gz' -> `./test/tiny/q.vcf.gz' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/tiny/NA12878.chr22.tiny.bam.bai' -> `./test/tiny/NA12878.chr22.tiny.bam.bai' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/tiny/hla.fa' -> `./test/tiny/hla.fa' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/tiny/NA12878.chr22.tiny.hla.bam' -> `./test/tiny/NA12878.chr22.tiny.hla.bam' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/tiny/q.fa.fai' -> `./test/tiny/q.fa.fai' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/tiny/1read.bam.bai' -> `./test/tiny/1read.bam.bai' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/tiny/q_spiked.vcf.gz' -> `./test/tiny/q_spiked.vcf.gz' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/tiny/hla.vcf.gz' -> `./test/tiny/hla.vcf.gz' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/tiny/q with spaces.fa' -> `./test/tiny/q with spaces.fa' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/tiny/NA12878.chr22.tiny.giab.vcf' -> `./test/tiny/NA12878.chr22.tiny.giab.vcf' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/tiny/q.vcf.gz.tbi' -> `./test/tiny/q.vcf.gz.tbi' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/tiny/q.fa' -> `./test/tiny/q.fa' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/tiny/q with spaces.fa.fai' -> `./test/tiny/q with spaces.fa.fai' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/tiny/q with spaces.regions' -> `./test/tiny/q with spaces.regions' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/tiny/NA12878.chr22.tiny.bam' -> `./test/tiny/NA12878.chr22.tiny.bam' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/tiny/NA12878.chr22.tiny.cram' -> `./test/tiny/NA12878.chr22.tiny.cram' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/tiny/NA12878.chr22.tiny.hla.bam.bai' -> `./test/tiny/NA12878.chr22.tiny.hla.bam.bai' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/tiny/q.regions' -> `./test/tiny/q.regions' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/tiny/1read.bam' -> `./test/tiny/1read.bam' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/tiny/hla.vcf.gz.tbi' -> `./test/tiny/hla.vcf.gz.tbi' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/test/tiny/hla.fa.fai' -> `./test/tiny/hla.fa.fai' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/python/allelebayes.py' -> `./python/allelebayes.py' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/python/logsumexp.py' -> `./python/logsumexp.py' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/python/.gitignore' -> `./python/.gitignore' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/python/README' -> `./python/README' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/python/phred.py' -> `./python/phred.py' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/python/dirichlet.py' -> `./python/dirichlet.py' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/python/hwe.py' -> `./python/hwe.py' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/python/multiset.py' -> `./python/multiset.py' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/python/factorialln.py' -> `./python/factorialln.py' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/README.md' -> `./contrib/README.md' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/LICENSE' -> `./contrib/SeqLib/LICENSE' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/README.md' -> `./contrib/SeqLib/README.md' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/SeqLib/GenomicRegionCollection.h' -> `./contrib/SeqLib/SeqLib/GenomicRegionCollection.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/SeqLib/BamHeader.h' -> `./contrib/SeqLib/SeqLib/BamHeader.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/SeqLib/ssw_cpp.h' -> `./contrib/SeqLib/SeqLib/ssw_cpp.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/SeqLib/BamRecord.h' -> `./contrib/SeqLib/SeqLib/BamRecord.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/SeqLib/GenomicRegion.h' -> `./contrib/SeqLib/SeqLib/GenomicRegion.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/SeqLib/IntervalTree.h' -> `./contrib/SeqLib/SeqLib/IntervalTree.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/SeqLib/BamWriter.h' -> `./contrib/SeqLib/SeqLib/BamWriter.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/SeqLib/BamReader.h' -> `./contrib/SeqLib/SeqLib/BamReader.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/SeqLib/UnalignedSequence.h' -> `./contrib/SeqLib/SeqLib/UnalignedSequence.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/SeqLib/SeqLibCommon.h' -> `./contrib/SeqLib/SeqLib/SeqLibCommon.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/SeqLib/SeqLibUtils.h' -> `./contrib/SeqLib/SeqLib/SeqLibUtils.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/SeqLib/aho_corasick.hpp' -> `./contrib/SeqLib/SeqLib/aho_corasick.hpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/SeqLib/BamWalker.h' -> `./contrib/SeqLib/SeqLib/BamWalker.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/SeqLib/ssw.h' -> `./contrib/SeqLib/SeqLib/ssw.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/SeqLib/GenomicRegionCollection.cpp' -> `./contrib/SeqLib/SeqLib/GenomicRegionCollection.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/SeqLib/ReadFilter.h' -> `./contrib/SeqLib/SeqLib/ReadFilter.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/SeqLib/ThreadPool.h' -> `./contrib/SeqLib/SeqLib/ThreadPool.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/src/ssw_cpp.cpp' -> `./contrib/SeqLib/src/ssw_cpp.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/src/GenomicRegion.cpp' -> `./contrib/SeqLib/src/GenomicRegion.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/src/BamWriter.cpp' -> `./contrib/SeqLib/src/BamWriter.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/src/ssw.c' -> `./contrib/SeqLib/src/ssw.c' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/src/BamReader.cpp' -> `./contrib/SeqLib/src/BamReader.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/src/BamHeader.cpp' -> `./contrib/SeqLib/src/BamHeader.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/src/BamRecord.cpp' -> `./contrib/SeqLib/src/BamRecord.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/json/json-forwards.h' -> `./contrib/SeqLib/json/json-forwards.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/json/json.h' -> `./contrib/SeqLib/json/json.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/bwa/kseq.h' -> `./contrib/SeqLib/bwa/kseq.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/bwa/bwamem.h' -> `./contrib/SeqLib/bwa/bwamem.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/bwa/bntseq.h' -> `./contrib/SeqLib/bwa/bntseq.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/bwa/bwt.h' -> `./contrib/SeqLib/bwa/bwt.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/bwa/bwa.h' -> `./contrib/SeqLib/bwa/bwa.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/SeqLib/bwa/utils.h' -> `./contrib/SeqLib/bwa/utils.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/ttmath/ttmathparser.h' -> `./contrib/ttmath/ttmathparser.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/ttmath/ttmaththreads.h' -> `./contrib/ttmath/ttmaththreads.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/ttmath/ttmath.h' -> `./contrib/ttmath/ttmath.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/ttmath/ttmathtypes.h' -> `./contrib/ttmath/ttmathtypes.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/ttmath/ttmathuint_x86_64.h' -> `./contrib/ttmath/ttmathuint_x86_64.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/ttmath/ttmathmisc.h' -> `./contrib/ttmath/ttmathmisc.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/ttmath/ttmathdec.h' -> `./contrib/ttmath/ttmathdec.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/ttmath/ttmathuint_x86.h' -> `./contrib/ttmath/ttmathuint_x86.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/ttmath/ttmathuint.h' -> `./contrib/ttmath/ttmathuint.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/ttmath/ttmathobjects.h' -> `./contrib/ttmath/ttmathobjects.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/ttmath/ttmathbig.h' -> `./contrib/ttmath/ttmathbig.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/ttmath/ttmathint.h' -> `./contrib/ttmath/ttmathint.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/ttmath/COPYRIGHT' -> `./contrib/ttmath/COPYRIGHT' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/ttmath/ttmathuint_noasm.h' -> `./contrib/ttmath/ttmathuint_noasm.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/ttmath/ttmathuint_x86_64_msvc.asm' -> `./contrib/ttmath/ttmathuint_x86_64_msvc.asm' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/htslib_config/config_vars.h' -> `./contrib/htslib_config/config_vars.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/htslib_config/config.h' -> `./contrib/htslib_config/config.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/htslib_config/version.h' -> `./contrib/htslib_config/version.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/freebayes/bamfiltertech.cpp' -> `./contrib/freebayes/bamfiltertech.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/freebayes/GenotypePriors.cpp' -> `./contrib/freebayes/GenotypePriors.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/freebayes/levenshtein.cpp' -> `./contrib/freebayes/levenshtein.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/freebayes/dummy.cpp' -> `./contrib/freebayes/dummy.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/freebayes/alleles.cpp' -> `./contrib/freebayes/alleles.cpp' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/contrib/freebayes/GenotypePriors.h' -> `./contrib/freebayes/GenotypePriors.h' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/scripts/vcffirstheader' -> `./scripts/vcffirstheader' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/scripts/coverage_to_regions.py' -> `./scripts/coverage_to_regions.py' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/scripts/fasta_generate_regions.py' -> `./scripts/fasta_generate_regions.py' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/scripts/split_ref_by_bai_datasize.py' -> `./scripts/split_ref_by_bai_datasize.py' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/scripts/freebayes-parallel' -> `./scripts/freebayes-parallel' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/scripts/sam_add_rg.pl' -> `./scripts/sam_add_rg.pl' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/scripts/samples.cnv' -> `./scripts/samples.cnv' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/scripts/GenerateFreebayesRegions.R' -> `./scripts/GenerateFreebayesRegions.R' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/scripts/bgziptabix' -> `./scripts/bgziptabix' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/scripts/update_version.sh' -> `./scripts/update_version.sh' `/gnu/store/l708j4n681qxnqi3fng6vgyag4d8mipv-freebayes-1.3.7-checkout/scripts/generate_freebayes_region_scripts.sh' -> `./scripts/generate_freebayes_region_scripts.sh' phase `unpack' succeeded after 0.1 seconds starting phase `unpack-submodule-sources' `/gnu/store/g3yr6jyx8biiwfl8yh8rj24c84kz4cy5-test-simple-bash-src-checkout/readme.asc' -> `test/test-simple-bash/readme.asc' `/gnu/store/g3yr6jyx8biiwfl8yh8rj24c84kz4cy5-test-simple-bash-src-checkout/change' -> `test/test-simple-bash/change' `/gnu/store/g3yr6jyx8biiwfl8yh8rj24c84kz4cy5-test-simple-bash-src-checkout/license' -> `test/test-simple-bash/license' `/gnu/store/g3yr6jyx8biiwfl8yh8rj24c84kz4cy5-test-simple-bash-src-checkout/package.yaml' -> `test/test-simple-bash/package.yaml' `/gnu/store/g3yr6jyx8biiwfl8yh8rj24c84kz4cy5-test-simple-bash-src-checkout/Makefile' -> `test/test-simple-bash/Makefile' `/gnu/store/g3yr6jyx8biiwfl8yh8rj24c84kz4cy5-test-simple-bash-src-checkout/test/basics.t' -> `test/test-simple-bash/test/basics.t' `/gnu/store/g3yr6jyx8biiwfl8yh8rj24c84kz4cy5-test-simple-bash-src-checkout/test/doc.t' -> `test/test-simple-bash/test/doc.t' `/gnu/store/g3yr6jyx8biiwfl8yh8rj24c84kz4cy5-test-simple-bash-src-checkout/test/no-label.t' -> `test/test-simple-bash/test/no-label.t' `/gnu/store/g3yr6jyx8biiwfl8yh8rj24c84kz4cy5-test-simple-bash-src-checkout/doc/asciidoc.conf' -> `test/test-simple-bash/doc/asciidoc.conf' `/gnu/store/g3yr6jyx8biiwfl8yh8rj24c84kz4cy5-test-simple-bash-src-checkout/doc/test-simple.bash.asc' -> `test/test-simple-bash/doc/test-simple.bash.asc' `/gnu/store/g3yr6jyx8biiwfl8yh8rj24c84kz4cy5-test-simple-bash-src-checkout/doc/manpage-normal.xsl' -> `test/test-simple-bash/doc/manpage-normal.xsl' `/gnu/store/g3yr6jyx8biiwfl8yh8rj24c84kz4cy5-test-simple-bash-src-checkout/doc/test-simple.bash.1' -> `test/test-simple-bash/doc/test-simple.bash.1' `/gnu/store/g3yr6jyx8biiwfl8yh8rj24c84kz4cy5-test-simple-bash-src-checkout/doc/manpage-base.xsl' -> `test/test-simple-bash/doc/manpage-base.xsl' `/gnu/store/g3yr6jyx8biiwfl8yh8rj24c84kz4cy5-test-simple-bash-src-checkout/lib/test-simple.bash' -> `test/test-simple-bash/lib/test-simple.bash' `/gnu/store/g3yr6jyx8biiwfl8yh8rj24c84kz4cy5-test-simple-bash-src-checkout/note/todo' -> `test/test-simple-bash/note/todo' phase `unpack-submodule-sources' succeeded after 0.0 seconds starting phase `patch-source' phase `patch-source' succeeded after 0.0 seconds starting phase `generate-gdk-pixbuf-loaders-cache-file' phase `generate-gdk-pixbuf-loaders-cache-file' succeeded after 0.0 seconds starting phase `patch-usr-bin-file' phase `patch-usr-bin-file' succeeded after 0.0 seconds starting phase `patch-source-shebangs' patch-shebang: ./examples/pipeline.sh: changing `/bin/bash' to `/gnu/store/h1ap2ldl46a57fa3978w6pdbrq3zhzks-bash-minimal-5.1.16/bin/bash' patch-shebang: ./python/allelebayes.py: changing `/usr/bin/env python3' to `/gnu/store/nlk74rb760n13nfmgm9lrpbd3jsd3r2n-python-3.10.7/bin/python3' patch-shebang: ./python/dirichlet.py: changing `/usr/bin/env python3' to `/gnu/store/nlk74rb760n13nfmgm9lrpbd3jsd3r2n-python-3.10.7/bin/python3' patch-shebang: ./python/hwe.py: changing `/usr/bin/env python3' to `/gnu/store/nlk74rb760n13nfmgm9lrpbd3jsd3r2n-python-3.10.7/bin/python3' patch-shebang: ./python/multiset.py: changing `/usr/bin/env python3' to `/gnu/store/nlk74rb760n13nfmgm9lrpbd3jsd3r2n-python-3.10.7/bin/python3' patch-shebang: ./scripts/bgziptabix: changing `/usr/bin/env bash' to `/gnu/store/h1ap2ldl46a57fa3978w6pdbrq3zhzks-bash-minimal-5.1.16/bin/bash' patch-shebang: ./scripts/coverage_to_regions.py: changing `/usr/bin/env python3' to `/gnu/store/nlk74rb760n13nfmgm9lrpbd3jsd3r2n-python-3.10.7/bin/python3' patch-shebang: ./scripts/fasta_generate_regions.py: changing `/usr/bin/env python3' to `/gnu/store/nlk74rb760n13nfmgm9lrpbd3jsd3r2n-python-3.10.7/bin/python3' patch-shebang: ./scripts/freebayes-parallel: changing `/usr/bin/env bash' to `/gnu/store/h1ap2ldl46a57fa3978w6pdbrq3zhzks-bash-minimal-5.1.16/bin/bash' patch-shebang: ./scripts/generate_freebayes_region_scripts.sh: changing `/bin/bash' to `/gnu/store/h1ap2ldl46a57fa3978w6pdbrq3zhzks-bash-minimal-5.1.16/bin/bash' patch-shebang: ./scripts/sam_add_rg.pl: changing `/usr/bin/env perl' to `/gnu/store/din1k9np84zdyxad7r05ap1bicjk0fvs-perl-5.36.0/bin/perl' patch-shebang: ./scripts/split_ref_by_bai_datasize.py: changing `/usr/bin/env python3' to `/gnu/store/nlk74rb760n13nfmgm9lrpbd3jsd3r2n-python-3.10.7/bin/python3' patch-shebang: ./scripts/update_version.sh: changing `/bin/sh' to `/gnu/store/h1ap2ldl46a57fa3978w6pdbrq3zhzks-bash-minimal-5.1.16/bin/sh' patch-shebang: ./scripts/vcffirstheader: changing `/usr/bin/env python3' to `/gnu/store/nlk74rb760n13nfmgm9lrpbd3jsd3r2n-python-3.10.7/bin/python3' patch-shebang: ./test/runner.sh: changing `/bin/sh' to `/gnu/store/h1ap2ldl46a57fa3978w6pdbrq3zhzks-bash-minimal-5.1.16/bin/sh' patch-shebang: ./test/t/00_region_and_target_handling.t: changing `/usr/bin/env bash' to `/gnu/store/h1ap2ldl46a57fa3978w6pdbrq3zhzks-bash-minimal-5.1.16/bin/bash' patch-shebang: ./test/t/01_call_variants.t: changing `/usr/bin/env bash' to `/gnu/store/h1ap2ldl46a57fa3978w6pdbrq3zhzks-bash-minimal-5.1.16/bin/bash' patch-shebang: ./test/t/01b_call_variants.t: changing `/usr/bin/env bash' to `/gnu/store/h1ap2ldl46a57fa3978w6pdbrq3zhzks-bash-minimal-5.1.16/bin/bash' patch-shebang: ./test/t/02_multi_bam.t: changing `/usr/bin/env bash' to `/gnu/store/h1ap2ldl46a57fa3978w6pdbrq3zhzks-bash-minimal-5.1.16/bin/bash' patch-shebang: ./test/t/03_reference_bases.t: changing `/usr/bin/env bash' to `/gnu/store/h1ap2ldl46a57fa3978w6pdbrq3zhzks-bash-minimal-5.1.16/bin/bash' patch-shebang: ./test/test-simple-bash/test/basics.t: changing `/bin/bash' to `/gnu/store/h1ap2ldl46a57fa3978w6pdbrq3zhzks-bash-minimal-5.1.16/bin/bash' patch-shebang: ./test/test-simple-bash/test/doc.t: changing `/bin/bash' to `/gnu/store/h1ap2ldl46a57fa3978w6pdbrq3zhzks-bash-minimal-5.1.16/bin/bash' patch-shebang: ./test/test-simple-bash/test/no-label.t: changing `/bin/bash' to `/gnu/store/h1ap2ldl46a57fa3978w6pdbrq3zhzks-bash-minimal-5.1.16/bin/bash' phase `patch-source-shebangs' succeeded after 0.1 seconds starting phase `configure' The Meson build system Version: 1.5.2 Source dir: /tmp/guix-build-freebayes-1.3.7.drv-0/source Build dir: /tmp/guix-build-freebayes-1.3.7.drv-0/build Build type: native build Project name: freebayes Project version: 1.3.6 C compiler for the host machine: gcc (gcc 11.4.0 "gcc (GCC) 11.4.0") C linker for the host machine: gcc ld.bfd 2.41 C++ compiler for the host machine: c++ (gcc 11.4.0 "c++ (GCC) 11.4.0") C++ linker for the host machine: c++ ld.bfd 2.41 Host machine cpu family: arm Host machine cpu: armv8l Found pkg-config: YES (/gnu/store/p6a690h4ipwmc000q61fkc6fab6412va-pkg-config-0.29.2/bin/pkg-config) 0.29.2 Run-time dependency zlib found: YES 1.3 Run-time dependency liblzma found: YES 5.4.5 Run-time dependency threads found: YES Library tabixpp found: YES Run-time dependency htslib found: YES 1.19 Library tabixpp found: YES Run-time dependency vcflib found: YES 1.0.9 Did not find CMake 'cmake' Found CMake: NO Run-time dependency libseqlib found: NO (tried pkgconfig and cmake) Compiler for C++ supports arguments -fpermissive: YES Compiler for C++ supports arguments -Wno-reorder: YES Compiler for C++ supports arguments -Wno-sign-compare: YES Compiler for C++ supports arguments -Wno-unused-variable: YES Compiler for C++ supports arguments -Wno-unused-but-set-variable: YES Program prove found: YES (/gnu/store/din1k9np84zdyxad7r05ap1bicjk0fvs-perl-5.36.0/bin/prove) Build targets in project: 4 freebayes 1.3.6 User defined options buildtype : debugoptimized prefix : /gnu/store/fp6rqij1dqg89lr0x6wzracgkaaly9hl-freebayes-1.3.7 c_link_args : -Wl,-rpath=/gnu/store/fp6rqij1dqg89lr0x6wzracgkaaly9hl-freebayes-1.3.7/lib cpp_link_args: -Wl,-rpath=/gnu/store/fp6rqij1dqg89lr0x6wzracgkaaly9hl-freebayes-1.3.7/lib Found ninja-1.11.1 at /gnu/store/8jp28jp07hxwa1nlfm6ic1cciw4rmi58-ninja-1.11.1/bin/ninja phase `configure' succeeded after 2.8 seconds starting phase `patch-generated-file-shebangs' phase `patch-generated-file-shebangs' succeeded after 0.0 seconds starting phase `build' [1/35] Compiling C object libcustom_seqlib.a.p/contrib_SeqLib_src_ssw.c.o [2/35] Compiling C++ object libfreebayes_common.a.p/src_Bias.cpp.o In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:72, from ../source/src/Bias.h:8, from ../source/src/Bias.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long double&}; _Tp = long double; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:67, from ../source/src/Bias.h:8, from ../source/src/Bias.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h: In member function ‘void Bias::open(std::string&)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [3/35] Compiling C++ object libcustom_seqlib.a.p/contrib_SeqLib_src_ssw_cpp.cpp.o [4/35] Compiling C++ object libfreebayes_common.a.p/src_Contamination.cpp.o [5/35] Compiling C++ object libcustom_seqlib.a.p/contrib_SeqLib_src_BamWriter.cpp.o [6/35] Compiling C++ object libfreebayes_common.a.p/src_Dirichlet.cpp.o In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:72, from ../source/src/Dirichlet.h:4, from ../source/src/Dirichlet.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long double}; _Tp = long double; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long double}; _Tp = long double; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [7/35] Compiling C++ object libfreebayes_common.a.p/src_CNV.cpp.o [8/35] Compiling C++ object libfreebayes_common.a.p/src_Ewens.cpp.o [9/35] Compiling C++ object libfreebayes_common.a.p/src_IndelAllele.cpp.o [10/35] Compiling C++ object libcustom_seqlib.a.p/contrib_SeqLib_src_BamHeader.cpp.o [11/35] Compiling C++ object libfreebayes_common.a.p/src_BedReader.cpp.o [12/35] Compiling C++ object libcustom_seqlib.a.p/contrib_SeqLib_src_BamRecord.cpp.o In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:72, from ../source/contrib/SeqLib/SeqLib/BamRecord.h:6, from ../source/contrib/SeqLib/src/BamRecord.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [13/35] Compiling C++ object libfreebayes_common.a.p/src_SegfaultHandler.cpp.o [14/35] Compiling C++ object libfreebayes_common.a.p/src_Multinomial.cpp.o In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:72, from ../source/src/Utility.h:7, from ../source/src/Multinomial.h:4, from ../source/src/Multinomial.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long double}; _Tp = long double; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long double}; _Tp = long double; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [15/35] Compiling C++ object libcustom_seqlib.a.p/contrib_SeqLib_src_BamReader.cpp.o [16/35] Compiling C++ object libfreebayes_common.a.p/src_NonCall.cpp.o In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/set:60, from ../source/src/NonCall.h:6, from ../source/src/NonCall.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, NonCall>; _KeyOfValue = std::_Select1st, NonCall> >; _Compare = std::less >; _Alloc = std::allocator, NonCall> >]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, NonCall>, std::_Select1st, NonCall> >, std::less >, std::allocator, NonCall> > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/map:61, from ../source/src/NonCall.h:7, from ../source/src/NonCall.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h: In member function ‘void NonCalls::aggregatePerSample(std::map, NonCall>&)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, NonCall>, std::_Select1st, NonCall> >, std::less >, std::allocator, NonCall> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h: In member function ‘void NonCalls::record(const string&, long int, const Samples&)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, NonCall>, std::_Select1st, NonCall> >, std::less >, std::allocator, NonCall> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [17/35] Compiling C++ object libfreebayes_common.a.p/src_Result.cpp.o In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/Result.h:6, from ../source/src/Result.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1799:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1799 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:61, from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/Result.h:6, from ../source/src/Result.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = SampleDataLikelihood; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/Result.h:6, from ../source/src/Result.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In member function ‘void Result::sortDataLikelihoods()’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [18/35] Compiling C++ object libfreebayes_common.a.p/src_FBFasta.cpp.o In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algobase.h:71, from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_tree.h:63, from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/map:60, from ../source/src/FBFasta.h:12, from ../source/src/FBFasta.cpp:9: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/predefined_ops.h: In function ‘constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = __gnu_cxx::__normal_iterator >; _Iterator2 = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(FB::FastaIndexEntry, FB::FastaIndexEntry)]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/predefined_ops.h:157:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 157 | operator()(_Iterator1 __it1, _Iterator2 __it2) | ^~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/predefined_ops.h:157:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:72, from ../source/src/FBFasta.h:15, from ../source/src/FBFasta.cpp:9: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const FB::FastaIndexEntry&}; _Tp = FB::FastaIndexEntry; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/map:60, from ../source/src/FBFasta.h:12, from ../source/src/FBFasta.cpp:9: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, FB::FastaIndexEntry>; _KeyOfValue = std::_Select1st, FB::FastaIndexEntry> >; _Compare = std::less >; _Alloc = std::allocator, FB::FastaIndexEntry> >]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, FB::FastaIndexEntry>, std::_Select1st, FB::FastaIndexEntry> >, std::less >, std::allocator, FB::FastaIndexEntry> > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/map:61, from ../source/src/FBFasta.h:12, from ../source/src/FBFasta.cpp:9: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h: In member function ‘std::string FB::FastaReference::sequenceNameStartingWith(std::string)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, FB::FastaIndexEntry>, std::_Select1st, FB::FastaIndexEntry> >, std::less >, std::allocator, FB::FastaIndexEntry> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/FBFasta.h:18, from ../source/src/FBFasta.cpp:9: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1799:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1799 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:61, from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/FBFasta.h:18, from ../source/src/FBFasta.cpp:9: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = FB::FastaIndexEntry; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/FBFasta.h:18, from ../source/src/FBFasta.cpp:9: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1642 | __heap_select(_RandomAccessIterator __first, | ^~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1642:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:82:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 82 | if (__comp(__a, __b)) | ~~~~~~^~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:84:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 84 | if (__comp(__b, __c)) | ~~~~~~^~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:86:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 86 | else if (__comp(__a, __c)) | ~~~~~~^~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:91:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 91 | else if (__comp(__a, __c)) | ~~~~~~^~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:93:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 93 | else if (__comp(__b, __c)) | ~~~~~~^~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1917:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1917 | std::__heap_select(__first, __middle, __last, __comp); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/map:61, from ../source/src/FBFasta.h:12, from ../source/src/FBFasta.cpp:9: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h: In function ‘std::ostream& FB::operator<<(std::ostream&, FB::FastaIndex&)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, FB::FastaIndexEntry>, std::_Select1st, FB::FastaIndexEntry> >, std::less >, std::allocator, FB::FastaIndexEntry> > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:67, from ../source/src/FBFasta.h:15, from ../source/src/FBFasta.cpp:9: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/FBFasta.h:18, from ../source/src/FBFasta.cpp:9: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [19/35] Compiling C++ object libfreebayes_common.a.p/src_LeftAlign.cpp.o [20/35] Compiling C++ object libfreebayes_common.a.p/src_Marginals.cpp.o In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:72, from ../source/src/Marginals.h:4, from ../source/src/Marginals.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long double&}; _Tp = long double; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/map:60, from ../source/src/Marginals.h:5, from ../source/src/Marginals.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = Genotype*; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/map:61, from ../source/src/Marginals.h:5, from ../source/src/Marginals.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h: In function ‘long double marginalGenotypeLikelihoods(std::__cxx11::list&, SampleDataLikelihoods&)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:67, from ../source/src/Marginals.h:4, from ../source/src/Marginals.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/map:61, from ../source/src/Marginals.h:5, from ../source/src/Marginals.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:67, from ../source/src/Marginals.h:4, from ../source/src/Marginals.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h: In function ‘long double balancedMarginalGenotypeLikelihoods(std::__cxx11::list&, SampleDataLikelihoods&)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/map:61, from ../source/src/Marginals.h:5, from ../source/src/Marginals.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:67, from ../source/src/Marginals.h:4, from ../source/src/Marginals.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/map:61, from ../source/src/Marginals.h:5, from ../source/src/Marginals.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [21/35] Compiling C++ object libfreebayes_common.a.p/src_DataLikelihood.cpp.o In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:72, from ../source/src/DataLikelihood.h:5, from ../source/src/DataLikelihood.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {SampleDataLikelihood}; _Tp = SampleDataLikelihood; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In function ‘std::vector > probObservedAllelesGivenGenotypes(Sample&, std::vector&, Bias&, std::vector&, Contamination&, std::map, double>&, Parameters&)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In function ‘void calculateSampleDataLikelihoods(Samples&, Results&, AlleleParser*, std::map >&, Parameters&, bool, Bias&, std::vector&, Contamination&, std::map, double>&, std::map, std::vector > >&, std::map, std::vector > >&, std::map, std::vector > >&)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [22/35] Compiling C++ object libfreebayes_common.a.p/src_Parameters.cpp.o [23/35] Compiling C++ object libfreebayes_common.a.p/src_Sample.cpp.o [24/35] Compiling C++ object bamleftalign.p/src_bamleftalign.cpp.o [25/35] Compiling C++ object libfreebayes_common.a.p/src_Allele.cpp.o In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:72, from ../source/src/Allele.h:8, from ../source/src/Allele.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Allele&}; _Tp = Allele; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:67, from ../source/src/Allele.h:8, from ../source/src/Allele.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h: In function ‘std::vector > groupAlleles_copy(std::vector&, bool (*)(Allele&, Allele&))’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h: In function ‘std::vector > groupAlleles_copy(std::vector&)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h: In function ‘std::vector > groupAlleles_copy(std::__cxx11::list&, bool (*)(Allele&, Allele&))’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/map:60, from ../source/src/Allele.h:10, from ../source/src/Allele.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = Allele; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/map:61, from ../source/src/Allele.h:10, from ../source/src/Allele.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h: In function ‘std::map countAlleles(std::vector&)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h: In function ‘std::map countAlleles(std::vector&)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h: In function ‘std::map countAlleles(std::__cxx11::list&)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:67, from ../source/src/Allele.h:8, from ../source/src/Allele.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h: In function ‘std::vector uniqueAlleles(std::__cxx11::list&)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:72, from ../source/src/Allele.h:8, from ../source/src/Allele.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Allele}; _Tp = Allele; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:67, from ../source/src/Allele.h:8, from ../source/src/Allele.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h: In function ‘std::vector alleleUnion(std::vector&, std::vector&)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:72, from ../source/src/Allele.h:8, from ../source/src/Allele.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Allele}; _Tp = Allele; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [26/35] Compiling C++ object libcustom_seqlib.a.p/contrib_SeqLib_src_GenomicRegion.cpp.o [27/35] Linking static target libcustom_seqlib.a [28/35] Compiling C++ object libfreebayes_common.a.p/src_Utility.cpp.o In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:72, from ../source/src/Utility.h:7, from ../source/src/Utility.cpp:3: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long double}; _Tp = long double; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In function ‘long double jointQuality(const std::vector&)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In function ‘double entropy(const string&)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../source/contrib/ttmath/ttmathint.h:48, from ../source/contrib/ttmath/ttmathbig.h:46, from ../source/contrib/ttmath/ttmath.h:58, from ../source/src/Utility.h:18, from ../source/src/Utility.cpp:3: In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../source/contrib/ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../source/contrib/ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Exp(const ValueType&, ttmath::ErrorCode*) [with ValueType = ttmath::Big<8, 2>]’ at ../source/contrib/ttmath/ttmath.h:326:10, inlined from ‘BigFloat big_exp(long double)’ at ../source/src/Utility.cpp:363:25: ../source/contrib/ttmath/ttmathuint.h:2740:43: warning: ‘x.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[0]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ ../source/src/Utility.cpp: In function ‘BigFloat big_exp(long double)’: ../source/src/Utility.cpp:361:14: note: ‘x’ declared here 361 | BigFloat x, result; | ^ In file included from ../source/contrib/ttmath/ttmathint.h:48, from ../source/contrib/ttmath/ttmathbig.h:46, from ../source/contrib/ttmath/ttmath.h:58, from ../source/src/Utility.h:18, from ../source/src/Utility.cpp:3: In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../source/contrib/ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../source/contrib/ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Exp(const ValueType&, ttmath::ErrorCode*) [with ValueType = ttmath::Big<8, 2>]’ at ../source/contrib/ttmath/ttmath.h:326:10, inlined from ‘BigFloat big_exp(long double)’ at ../source/src/Utility.cpp:363:25: ../source/contrib/ttmath/ttmathuint.h:2740:43: warning: ‘x.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[1]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ ../source/src/Utility.cpp: In function ‘BigFloat big_exp(long double)’: ../source/src/Utility.cpp:361:14: note: ‘x’ declared here 361 | BigFloat x, result; | ^ In file included from ../source/contrib/ttmath/ttmathint.h:48, from ../source/contrib/ttmath/ttmathbig.h:46, from ../source/contrib/ttmath/ttmath.h:58, from ../source/src/Utility.h:18, from ../source/src/Utility.cpp:3: In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../source/contrib/ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../source/contrib/ttmath/ttmathbig.h:3660:12, inlined from ‘ttmath::Big ttmath::Big::operator+(const ttmath::Big&) const [with unsigned int exp = 8; unsigned int man = 2]’ at ../source/contrib/ttmath/ttmathbig.h:5570:15, inlined from ‘long double logsumexp_probs(const std::vector&)’ at ../source/src/Utility.cpp:381:48: ../source/contrib/ttmath/ttmathuint.h:2740:43: warning: ‘maxNb.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[0]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ ../source/src/Utility.cpp: In function ‘long double logsumexp_probs(const std::vector&)’: ../source/src/Utility.cpp:380:14: note: ‘maxNb’ declared here 380 | BigFloat maxNb; maxNb.FromDouble(maxN); | ^~~~~ In file included from ../source/contrib/ttmath/ttmathint.h:48, from ../source/contrib/ttmath/ttmathbig.h:46, from ../source/contrib/ttmath/ttmath.h:58, from ../source/src/Utility.h:18, from ../source/src/Utility.cpp:3: In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../source/contrib/ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../source/contrib/ttmath/ttmathbig.h:3660:12, inlined from ‘ttmath::Big ttmath::Big::operator+(const ttmath::Big&) const [with unsigned int exp = 8; unsigned int man = 2]’ at ../source/contrib/ttmath/ttmathbig.h:5570:15, inlined from ‘long double logsumexp_probs(const std::vector&)’ at ../source/src/Utility.cpp:381:48: ../source/contrib/ttmath/ttmathuint.h:2740:43: warning: ‘maxNb.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[1]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ ../source/src/Utility.cpp: In function ‘long double logsumexp_probs(const std::vector&)’: ../source/src/Utility.cpp:380:14: note: ‘maxNb’ declared here 380 | BigFloat maxNb; maxNb.FromDouble(maxN); | ^~~~~ In file included from ../source/contrib/ttmath/ttmathbig.h:46, from ../source/contrib/ttmath/ttmath.h:58, from ../source/src/Utility.h:18, from ../source/src/Utility.cpp:3: In member function ‘ttmath::uint ttmath::Int::FromUIntOrInt(const ttmath::UInt&, bool) [with unsigned int argument_size = 8; unsigned int value_size = 8]’, inlined from ‘ttmath::uint ttmath::Int::FromInt(const ttmath::Int&) [with unsigned int argument_size = 8; unsigned int value_size = 8]’ at ../source/contrib/ttmath/ttmathint.h:698:23, inlined from ‘ttmath::Int& ttmath::Int::operator=(const ttmath::Int&) [with unsigned int value_size = 8]’ at ../source/contrib/ttmath/ttmathint.h:772:10, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../source/contrib/ttmath/ttmathbig.h:3647:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../source/contrib/ttmath/ttmathbig.h:3660:12, inlined from ‘ttmath::Big ttmath::Big::operator+(const ttmath::Big&) const [with unsigned int exp = 8; unsigned int man = 2]’ at ../source/contrib/ttmath/ttmathbig.h:5570:15, inlined from ‘long double logsumexp_probs(const std::vector&)’ at ../source/src/Utility.cpp:381:48: ../source/contrib/ttmath/ttmathint.h:652:61: warning: ‘maxNb.ttmath::Big<8, 2>::exponent.ttmath::Int<8>::.ttmath::UInt<8>::table[0]’ may be used uninitialized [-Wmaybe-uninitialized] 652 | UInt::table[i] = p.table[i]; | ~~~~~~~^ ../source/src/Utility.cpp: In function ‘long double logsumexp_probs(const std::vector&)’: ../source/src/Utility.cpp:380:14: note: ‘maxNb’ declared here 380 | BigFloat maxNb; maxNb.FromDouble(maxN); | ^~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:72, from ../source/src/Utility.h:7, from ../source/src/Utility.cpp:3: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In function ‘long double poissonPvalLn(int, int)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../source/contrib/ttmath/ttmathint.h:48, from ../source/contrib/ttmath/ttmathbig.h:46, from ../source/contrib/ttmath/ttmath.h:58, from ../source/src/Utility.h:18, from ../source/src/Utility.cpp:3: In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../source/contrib/ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../source/contrib/ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ttmath::ErrorCode*) [with ValueType = ttmath::Big<8, 2>]’ at ../source/contrib/ttmath/ttmath.h:311:9, inlined from ‘long double big2phred(const BigFloat&)’ at ../source/src/Utility.cpp:58:44: ../source/contrib/ttmath/ttmathuint.h:2740:43: warning: ‘result.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[0]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ In file included from ../source/src/Utility.h:18, from ../source/src/Utility.cpp:3: ../source/contrib/ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’: ../source/contrib/ttmath/ttmath.h:288:27: note: ‘result’ declared here 288 | ValueType result; | ^~~~~~ In file included from ../source/contrib/ttmath/ttmathint.h:48, from ../source/contrib/ttmath/ttmathbig.h:46, from ../source/contrib/ttmath/ttmath.h:58, from ../source/src/Utility.h:18, from ../source/src/Utility.cpp:3: In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../source/contrib/ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../source/contrib/ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ttmath::ErrorCode*) [with ValueType = ttmath::Big<8, 2>]’ at ../source/contrib/ttmath/ttmath.h:311:9, inlined from ‘long double big2phred(const BigFloat&)’ at ../source/src/Utility.cpp:58:44: ../source/contrib/ttmath/ttmathuint.h:2740:43: warning: ‘result.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[1]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ In file included from ../source/src/Utility.h:18, from ../source/src/Utility.cpp:3: ../source/contrib/ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’: ../source/contrib/ttmath/ttmath.h:288:27: note: ‘result’ declared here 288 | ValueType result; | ^~~~~~ In file included from ../source/contrib/ttmath/ttmathint.h:48, from ../source/contrib/ttmath/ttmathbig.h:46, from ../source/contrib/ttmath/ttmath.h:58, from ../source/src/Utility.h:18, from ../source/src/Utility.cpp:3: In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../source/contrib/ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../source/contrib/ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ttmath::ErrorCode*) [with ValueType = ttmath::Big<8, 2>]’ at ../source/contrib/ttmath/ttmath.h:311:9, inlined from ‘long double big2phred(const BigFloat&)’ at ../source/src/Utility.cpp:58:44: ../source/contrib/ttmath/ttmathuint.h:2740:43: warning: ‘result.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[0]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ In file included from ../source/src/Utility.h:18, from ../source/src/Utility.cpp:3: ../source/contrib/ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’: ../source/contrib/ttmath/ttmath.h:288:27: note: ‘result’ declared here 288 | ValueType result; | ^~~~~~ In file included from ../source/contrib/ttmath/ttmathint.h:48, from ../source/contrib/ttmath/ttmathbig.h:46, from ../source/contrib/ttmath/ttmath.h:58, from ../source/src/Utility.h:18, from ../source/src/Utility.cpp:3: In member function ‘ttmath::UInt& ttmath::UInt::operator=(const ttmath::UInt&) [with unsigned int value_size = 2]’, inlined from ‘ttmath::Big& ttmath::Big::operator=(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../source/contrib/ttmath/ttmathbig.h:3648:12, inlined from ‘ttmath::Big::Big(const ttmath::Big&) [with unsigned int exp = 8; unsigned int man = 2]’ at ../source/contrib/ttmath/ttmathbig.h:3660:12, inlined from ‘ValueType ttmath::Log(const ValueType&, const ValueType&, ttmath::ErrorCode*) [with ValueType = ttmath::Big<8, 2>]’ at ../source/contrib/ttmath/ttmath.h:311:9, inlined from ‘long double big2phred(const BigFloat&)’ at ../source/src/Utility.cpp:58:44: ../source/contrib/ttmath/ttmathuint.h:2740:43: warning: ‘result.ttmath::Big<8, 2>::mantissa.ttmath::UInt<2>::table[1]’ may be used uninitialized [-Wmaybe-uninitialized] 2740 | table[i] = p.table[i]; | ~~~~~~~^ In file included from ../source/src/Utility.h:18, from ../source/src/Utility.cpp:3: ../source/contrib/ttmath/ttmath.h: In function ‘long double big2phred(const BigFloat&)’: ../source/contrib/ttmath/ttmath.h:288:27: note: ‘result’ declared here 288 | ValueType result; | ^~~~~~ [29/35] Compiling C++ object libfreebayes_common.a.p/src_Genotype.cpp.o In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:72, from ../source/src/Genotype.h:5, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long double}; _Tp = long double; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long double}; _Tp = long double; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘std::vector Genotype::alleleProbabilities()’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘std::vector GenotypeCombo::alleleProbs()’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Genotype}; _Tp = Genotype; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:61, from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/Genotype.h:7, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:72, from ../source/src/Genotype.h:5, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:61, from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/Genotype.h:7, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Allele; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:72, from ../source/src/Genotype.h:5, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Allele&}; _Tp = Allele; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:67, from ../source/src/Genotype.h:5, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h: In member function ‘std::vector Genotype::alternateAlleles(std::string&)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h: In function ‘std::vector > multichoose(int, std::vector&) [with T = Allele]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:61, from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/Genotype.h:7, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h: In function ‘void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:253:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 253 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:253:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:253:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:253:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/Genotype.h:7, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1799:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1799 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1799:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:72, from ../source/src/Genotype.h:5, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {GenotypeElement}; _Tp = GenotypeElement; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:61, from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/Genotype.h:7, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = SampleDataLikelihood; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = SampleDataLikelihood; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = SampleDataLikelihood; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/Genotype.h:7, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1799:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1799 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1799:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1799 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1799:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1799 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/map:60, from ../source/src/Genotype.h:10, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = Allele; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/map:61, from ../source/src/Genotype.h:10, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h: In function ‘void addAllHomozygousCombos(std::__cxx11::list&, SampleDataLikelihoods&, SampleDataLikelihoods&, SampleDataLikelihoods&, Samples&, std::vector&, long double, bool, bool, bool, bool, bool, bool, long double)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/map:60, from ../source/src/Genotype.h:10, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = Allele; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/Genotype.h:7, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1799:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1799 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/map:61, from ../source/src/Genotype.h:10, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h: In function ‘void combinePopulationCombos(std::__cxx11::list&, std::map, std::__cxx11::list >&)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:61, from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/Genotype.h:7, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h: In function ‘void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:253:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 253 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:253:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:253:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/Genotype.h:7, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:61, from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/Genotype.h:7, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:424:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 424 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/Genotype.h:7, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1646:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1646 | std::__make_heap(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In constructor ‘Genotype::Genotype(std::vector&)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:72, from ../source/src/Genotype.h:5, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In function ‘std::vector allPossibleGenotypes(int, std::vector&)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/Genotype.h:7, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:61, from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/Genotype.h:7, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:424:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 424 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/Genotype.h:7, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1646:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1646 | std::__make_heap(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/map:61, from ../source/src/Genotype.h:10, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h: In function ‘std::vector > alternateAlleles(GenotypeCombo&, std::string)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:72, from ../source/src/Genotype.h:5, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/Genotype.h:7, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘bool sortSampleDataLikelihoodsScaledByMarginals(std::vector&)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘bool sortSampleDataLikelihoodsByMarginals(std::vector&)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void sortSampleDataLikelihoods(std::vector&)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:61, from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/Genotype.h:7, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = SampleDataLikelihood; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/Genotype.h:7, from ../source/src/Genotype.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘bool sortSampleDataLikelihoodsByMarginalsAndObs(std::vector&)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [30/35] Compiling C++ object libfreebayes_common.a.p/src_ResultData.cpp.o In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:72, from ../source/src/ResultData.h:4, from ../source/src/ResultData.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Allele&}; _Tp = Allele; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/map:60, from ../source/src/Genotype.h:10, from ../source/src/ResultData.h:7, from ../source/src/ResultData.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_tree.h:2428:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2428 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:67, from ../source/src/ResultData.h:4, from ../source/src/ResultData.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h: In member function ‘vcflib::Variant& Results::vcf(vcflib::Variant&, BigFloat, long double, Samples&, std::string, std::vector&, std::map, int>, int, std::vector >&, int, GenotypeCombo&, std::map, std::vector >&, std::map, std::vector >&, std::map >&, std::map >&, std::vector >&, AlleleParser*)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/map:61, from ../source/src/Genotype.h:10, from ../source/src/ResultData.h:7, from ../source/src/ResultData.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_map.h:501:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [31/35] Compiling C++ object freebayes.p/src_freebayes.cpp.o In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:72, from ../source/src/freebayes.cpp:12: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const SampleDataLikelihood&}; _Tp = SampleDataLikelihood; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/list:63, from ../source/src/Utility.h:8, from ../source/src/Parameters.h:14, from ../source/src/freebayes.cpp:26: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_list.h: In member function ‘void std::__cxx11::list<_Tp, _Alloc>::_M_insert(std::__cxx11::list<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const GenotypeCombo&}; _Tp = GenotypeCombo; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_list.h:1910:8: note: parameter passing for argument of type ‘std::__cxx11::list::iterator’ changed in GCC 7.1 1910 | _M_insert(iterator __position, _Args&&... __args) | ^~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:72, from ../source/src/freebayes.cpp:12: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long double&}; _Tp = long double; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Allele&}; _Tp = Allele; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:67, from ../source/src/freebayes.cpp:12: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Allele; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:72, from ../source/src/freebayes.cpp:12: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Allele}; _Tp = Allele; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Allele}; _Tp = Allele; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:67, from ../source/src/freebayes.cpp:12: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h: In member function ‘void Results::update(SampleDataLikelihoods&)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/list:63, from ../source/src/Utility.h:8, from ../source/src/Parameters.h:14, from ../source/src/freebayes.cpp:26: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_list.h: In function ‘int main(int, char**)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_list.h:1213:24: note: parameter passing for argument of type ‘std::_List_iterator’ changed in GCC 7.1 1213 | { this->_M_insert(end(), __x); } | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:67, from ../source/src/freebayes.cpp:12: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/list:63, from ../source/src/Utility.h:8, from ../source/src/Parameters.h:14, from ../source/src/freebayes.cpp:26: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_list.h:1213:24: note: parameter passing for argument of type ‘std::_List_iterator’ changed in GCC 7.1 1213 | { this->_M_insert(end(), __x); } | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ [32/35] Compiling C++ object libfreebayes_common.a.p/src_AlleleParser.cpp.o In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:72, from ../source/src/AlleleParser.h:7, from ../source/src/AlleleParser.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Allele&}; _Tp = Allele; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:67, from ../source/src/AlleleParser.h:7, from ../source/src/AlleleParser.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Allele; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h: In member function ‘void RegisteredAlignment::addAllele(Allele, bool, int, bool)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/AlleleParser.h:11, from ../source/src/AlleleParser.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘_ForwardIterator std::__remove_if(_ForwardIterator, _ForwardIterator, _Predicate) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_pred]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:813:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 813 | __remove_if(_ForwardIterator __first, _ForwardIterator __last, | ^~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:813:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:72, from ../source/src/AlleleParser.h:7, from ../source/src/AlleleParser.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = Allele; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 184 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:184:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:61, from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/AlleleParser.h:11, from ../source/src/AlleleParser.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = std::pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Allele; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/AlleleParser.h:11, from ../source/src/AlleleParser.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1799:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1799 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1819 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In member function ‘void RegisteredAlignment::clumpAlleles(bool, int, bool)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:894:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 894 | return std::__remove_if(__first, __last, | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 895 | __gnu_cxx::__ops::__pred_iter(__pred)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:67, from ../source/src/AlleleParser.h:7, from ../source/src/AlleleParser.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1461:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/AlleleParser.h:11, from ../source/src/AlleleParser.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:894:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 894 | return std::__remove_if(__first, __last, | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 895 | __gnu_cxx::__ops::__pred_iter(__pred)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:67, from ../source/src/AlleleParser.h:7, from ../source/src/AlleleParser.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1461:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/AlleleParser.h:11, from ../source/src/AlleleParser.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:894:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 894 | return std::__remove_if(__first, __last, | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 895 | __gnu_cxx::__ops::__pred_iter(__pred)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:67, from ../source/src/AlleleParser.h:7, from ../source/src/AlleleParser.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1461:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:72, from ../source/src/AlleleParser.h:7, from ../source/src/AlleleParser.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:121:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Allele}; _Tp = Allele; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_insert_rval(std::vector<_Tp, _Alloc>::const_iterator, std::vector<_Tp, _Alloc>::value_type&&) [with _Tp = Allele; _Alloc = std::allocator]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:340:5: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 340 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/vector.tcc:356:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 356 | _M_realloc_insert(begin() + __n, std::move(__v)); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:61, from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/AlleleParser.h:11, from ../source/src/AlleleParser.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h: In function ‘void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:253:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 253 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:253:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:253:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h: In function ‘void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:253:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 253 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:253:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:253:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/AlleleParser.h:11, from ../source/src/AlleleParser.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:61, from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/AlleleParser.h:11, from ../source/src/AlleleParser.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:424:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 424 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/AlleleParser.h:11, from ../source/src/AlleleParser.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1646:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1646 | std::__make_heap(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In member function ‘bool RegisteredAlignment::fitHaplotype(int, int, Allele*&, bool)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:894:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 894 | return std::__remove_if(__first, __last, | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 895 | __gnu_cxx::__ops::__pred_iter(__pred)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:67, from ../source/src/AlleleParser.h:7, from ../source/src/AlleleParser.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1461:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1461 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/AlleleParser.h:11, from ../source/src/AlleleParser.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1925 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1925:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:61, from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/AlleleParser.h:11, from ../source/src/AlleleParser.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_heap.h:424:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 424 | std::__pop_heap(__first, __last, __last, __comp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/AlleleParser.h:11, from ../source/src/AlleleParser.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1939:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1939 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1646:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1646 | std::__make_heap(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:67, from ../source/src/AlleleParser.h:7, from ../source/src/AlleleParser.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h: In member function ‘std::vector AlleleParser::genotypeAlleles(std::map, std::vector >&, Samples&, bool, int)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1294:30: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 1294 | { return _M_insert_rval(__position, std::move(__x)); } | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/algorithm:62, from ../source/src/AlleleParser.h:11, from ../source/src/AlleleParser.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1954:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1954 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1955 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1956 | __comp); | ~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1866:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1866 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_algo.h:1871:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1871 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/vector:67, from ../source/src/AlleleParser.h:7, from ../source/src/AlleleParser.cpp:1: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1294:30: note: parameter passing for argument of type ‘std::vector::const_iterator’ changed in GCC 7.1 1294 | { return _M_insert_rval(__position, std::move(__x)); } | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h: In member function ‘void AlleleParser::getInputVariantsInRegion(std::string&, long int, long int)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h: In member function ‘void AlleleParser::updateInputVariants(long int, int)’: /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /gnu/store/r4bj333lsb6xan75wsy24y9r4fidb6x0-gcc-11.4.0/include/c++/bits/stl_vector.h:1198:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [33/35] Linking static target libfreebayes_common.a [34/35] Linking target bamleftalign [35/35] Linking target freebayes phase `build' succeeded after 44.8 seconds starting phase `check' ninja: Entering directory `/tmp/guix-build-freebayes-1.3.7.drv-0/build' ninja: no work to do. 1/5 T03 FAIL 0.33s exit status 1 >>> MESON_TEST_ITERATION=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=228 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /gnu/store/din1k9np84zdyxad7r05ap1bicjk0fvs-perl-5.36.0/bin/prove -e bash -v t/03_reference_bases.t 2/5 T00 FAIL 0.53s exit status 1 >>> MESON_TEST_ITERATION=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=142 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /gnu/store/din1k9np84zdyxad7r05ap1bicjk0fvs-perl-5.36.0/bin/prove -e bash -v t/00_region_and_target_handling.t 3/5 T02 FAIL 0.68s exit status 1 >>> MESON_TEST_ITERATION=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=128 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /gnu/store/din1k9np84zdyxad7r05ap1bicjk0fvs-perl-5.36.0/bin/prove -e bash -v t/02_multi_bam.t 4/5 T01 FAIL 1.19s exit status 1 >>> MESON_TEST_ITERATION=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=186 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /gnu/store/din1k9np84zdyxad7r05ap1bicjk0fvs-perl-5.36.0/bin/prove -e bash -v t/01_call_variants.t 5/5 T01b FAIL 1.78s exit status 1 >>> MESON_TEST_ITERATION=1 MALLOC_PERTURB_=138 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /gnu/store/din1k9np84zdyxad7r05ap1bicjk0fvs-perl-5.36.0/bin/prove -e bash -v t/01b_call_variants.t Ok: 0 Expected Fail: 0 Fail: 5 Unexpected Pass: 0 Skipped: 0 Timeout: 0 Full log written to /tmp/guix-build-freebayes-1.3.7.drv-0/build/meson-logs/testlog.txt error: in phase 'check': uncaught exception: %exception #<&invoke-error program: "meson" arguments: ("test" "--timeout-multiplier" "5") exit-status: 5 term-signal: #f stop-signal: #f> phase `check' failed after 2.5 seconds command "meson" "test" "--timeout-multiplier" "5" failed with status 5 build process 18 exited with status 256