starting phase `set-SOURCE-DATE-EPOCH' phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds starting phase `set-paths' environment variable `PATH' set to `/gnu/store/7nxvcm0jk30ipzbbw3k7rbljymmsqpkp-r-minimal-4.0.4/bin:/gnu/store/gww59gv5qxbfijg3vk5y182im7923s06-tar-1.32/bin:/gnu/store/2ayciqwxddkzq183dac82ijljc14j4zj-gzip-1.10/bin:/gnu/store/n1jk0w2wa4vpwmixaqn2y3la1l2sizzi-bzip2-1.0.8/bin:/gnu/store/7p36raqgk6vn47bflxc9bsclqiib3phi-xz-5.2.4/bin:/gnu/store/lpkf3ydcdvxn8gcrzaq9cp3ri05h8qhs-file-5.38/bin:/gnu/store/6gqaw09zqw8w0vcax6simlq71bq7l5r0-diffutils-3.7/bin:/gnu/store/qw20chpgkgbcqmzhs60c8hjl1hmblyc8-patch-2.7.6/bin:/gnu/store/b5y5scfmh2d8kxcpl9p84294z2198cgf-findutils-4.7.0/bin:/gnu/store/9iwlsj7d6ffqhshy8qshf7p4fqwfwrvn-gawk-5.0.1/bin:/gnu/store/q1nfjb24vqjs1cgi8mlnskw34h16y09r-sed-4.8/bin:/gnu/store/4qr6mcvsxyzknxa7x1wny8x30f5i0r3n-grep-3.4/bin:/gnu/store/2v61vg0bizgrhybkqbrki2k7kr094waz-coreutils-8.32/bin:/gnu/store/b7jbh7kzzig0bxfswdj8nfj9bkljyyya-make-4.3/bin:/gnu/store/v1g7f3p4f0851mywrla8qmr9hb8jgfjr-bash-minimal-5.0.16/bin:/gnu/store/dyqxnydqk1810afjfbqzfvh0n83xyl62-ld-wrapper-0/bin:/gnu/store/50lyzn9bz6x4da66648kry29wn8afird-binutils-2.34/bin:/gnu/store/afpgzln8860m6yfhxy6i8n9rywbp85cy-gcc-7.5.0/bin:/gnu/store/z4li262il798hbl0l1h1k3a5g7r6bffa-glibc-2.31/bin:/gnu/store/z4li262il798hbl0l1h1k3a5g7r6bffa-glibc-2.31/sbin' environment variable `R_LIBS_SITE' set to `/gnu/store/8dsrxl0v44l4p6y4ir66vgx5ynrbf6a9-r-knitr-1.33/site-library/:/gnu/store/y80w65kfj5s2a7hfcnvcxjx8b13wap2l-r-annotationdbi-1.52.0/site-library/:/gnu/store/1pvzb5gz9h8xnqnfpnaz5w44y3agr3i0-r-biocfilecache-1.14.0/site-library/:/gnu/store/rzjl2m1xkxsqkm1nj79165gmmd5snldb-r-httr-1.4.2/site-library/:/gnu/store/nx3pwif7znpf7lqrngkry5zwif9fnays-r-openssl-1.4.4/site-library/:/gnu/store/9p0qiib5cnb937rkz370zc1697c8q84k-r-progress-1.2.2/site-library/:/gnu/store/vnrki3irlq2yl3ikghb82ri5jhq2h7w2-r-rappdirs-0.3.3/site-library/:/gnu/store/sr84ba6q3lw6yxbbh1nakl9gwn9r4ww5-r-stringr-1.4.0/site-library/:/gnu/store/c1m9ak5paq220mbjzxyg1jz789b48ria-r-xml-3.99-0.6/site-library/:/gnu/store/l4ky07zzkb00z7w7r9lcvc99f8mqxs2y-r-xml2-1.3.2/site-library/:/gnu/store/78jp6nabbhw5jdwqy9rvq02mgniwp09p-r-yaml-2.2.1/site-library/:/gnu/store/grqy61c7v0nsq0ggh6r32s8wmvrbz1km-r-xfun-0.22/site-library/:/gnu/store/0bj1n4ra7ndgszgc241hqa9xb0k8aakc-r-markdown-1.1/site-library/:/gnu/store/jx0bi0aqhpahijr088i6xsh9v9y353yk-r-highr-0.9/site-library/:/gnu/store/qmwb2r96wr52v7zny0rqzrz1z1p31ard-r-evaluate-0.14/site-library/:/gnu/store/4qfk9cwc876il5yi57fxc1381zxl8y9r-r-s4vectors-0.28.1/site-library/:/gnu/store/5xm7mawmb7s3yvnyyip20nv365ll4pnr-r-rsqlite-2.2.7/site-library/:/gnu/store/xsr0xlv6x8s6gnd88w99wc1gz8c2hyb8-r-iranges-2.24.1/site-library/:/gnu/store/867wl9q2mcm1zlllxl5zy34r71yblw9c-r-dbi-1.1.1/site-library/:/gnu/store/3jklg1lli1xk72mbymlzw6h3ifp0nphz-r-biocgenerics-0.36.1/site-library/:/gnu/store/flfl67allf8nhj2xfg4zxxqx94rqzrs2-r-biobase-2.50.0/site-library/:/gnu/store/szgakaa5gilxaijsp3cq7jm0757i0gd8-r-dplyr-1.0.5/site-library/:/gnu/store/abh5dx90bz4fq0d7d2lr1z3y3liwh96r-r-dbplyr-2.1.1/site-library/:/gnu/store/l7h6awzgjabv9xqap6sizm4mfisbh7wk-r-curl-4.3.1/site-library/:/gnu/store/2mhjql033gj4vzn5m64dgsy1wcap2r74-r-r6-2.5.0/site-library/:/gnu/store/wqz1g46xfkqcp16al79p3hvk9ingqvmg-r-mime-0.10/site-library/:/gnu/store/jk4ask9vnn2mv89hshrsysyyxl4hy9a9-r-jsonlite-1.7.2/site-library/:/gnu/store/i85zig7ypk41hlsdx6nwvhfd2j7ym0ky-r-askpass-1.1/site-library/:/gnu/store/80h0lqsc5d7bzlk1kfxmpa84sx72mdn5-r-prettyunits-1.1.1/site-library/:/gnu/store/0z9vmybs6ahbp7wrq002mj3imyjkgmv6-r-hms-1.0.0/site-library/:/gnu/store/v7dkfkfmjshm6nd0yn3729v84q43y30q-r-crayon-1.4.1/site-library/:/gnu/store/gdjvngsf0ld256wrw6qzdilyxmv968q6-r-stringi-1.5.3/site-library/:/gnu/store/j2dl7sh5w69695f2dyma0jvck6jhcm5c-r-magrittr-2.0.1/site-library/:/gnu/store/2agxp2mzwcbdgd6cmq73l3xy8awf68qy-r-glue-1.4.2/site-library/:/gnu/store/dpfhhlaxfbikkdb76wxg63876422hsb4-r-pkgconfig-2.0.3/site-library/:/gnu/store/xq37zwy8ynpvy65yh1ca24j6y1qipr2f-r-blob-1.2.1/site-library/:/gnu/store/61p39aqfsjbkxf82hyp49rixd71y3jsc-r-bit64-4.0.5/site-library/:/gnu/store/xs0hj874x2b5nz52ixg2q82ak6pavb6x-r-rcpp-1.0.6/site-library/:/gnu/store/fkfgd6a9qqh45x3l3ha7ynrrgw6rrjl5-r-plogr-0.2.0/site-library/:/gnu/store/rhcfbp47k9f0jj88z5wdg8am8vicbwjs-r-memoise-2.0.0/site-library/:/gnu/store/4zwfx0pjrk438l6s38dzlmxc7d0mm5v3-r-vctrs-0.3.8/site-library/:/gnu/store/67b5f3wvk3qm7ms2rxfwbmjlhswjgwvx-r-tidyselect-1.1.1/site-library/:/gnu/store/va4fj6cq1lahnxq1a1gvbflzas3023gw-r-tibble-3.1.1/site-library/:/gnu/store/8p0xffg9srx3ph5sis6ywqqrbwr4znnr-r-rlang-0.4.11/site-library/:/gnu/store/6pfhsp09hsb5nlybnf71gs3aidb134m7-r-lifecycle-1.0.0/site-library/:/gnu/store/2j16kgwds3wjv83mbsl25nyr6s2pa3r8-r-generics-0.1.0/site-library/:/gnu/store/r3lvdxmhpdzwrccyp01mgv09ak75p4jb-r-ellipsis-0.3.2/site-library/:/gnu/store/lgznjs8hv44dgnb0w43hx6f8iiabv3s0-r-withr-2.4.2/site-library/:/gnu/store/sjwzmv4a7jyq65awvlhhzw41c4vbra63-r-purrr-0.3.4/site-library/:/gnu/store/32azp25z63hybr1vpqs8diiacb48lzjp-r-assertthat-0.2.1/site-library/:/gnu/store/sx13zsy8hd3sc0l0qym56bf2acj88vd8-r-sys-3.4/site-library/:/gnu/store/r8p7lv5m4509vzhc2caxz8v9gzdwk81x-r-bit-4.0.4/site-library/:/gnu/store/8jgqdrgcckjx3zg9f8lk2jkni2hi86vp-r-cachem-1.0.4/site-library/:/gnu/store/dvclb4dsx004yz3hajirflxfp33pph3n-r-pillar-1.6.0/site-library/:/gnu/store/biih48z2dylhm1ma94pwzy62kh1zk0i9-r-fansi-0.4.2/site-library/:/gnu/store/67mfmh7a85mq7ga7kgcgvpikn715hdms-r-fastmap-1.1.0/site-library/:/gnu/store/f279d4j8651b61prf9yw4ncnpqicxwh0-r-utf8-1.2.1/site-library/:/gnu/store/yb3b88s5mdmc71vdq9fy9p3y88i28m7y-r-cli-2.5.0/site-library/' environment variable `BASH_LOADABLES_PATH' unset environment variable `C_INCLUDE_PATH' set to `/gnu/store/n1jk0w2wa4vpwmixaqn2y3la1l2sizzi-bzip2-1.0.8/include:/gnu/store/7p36raqgk6vn47bflxc9bsclqiib3phi-xz-5.2.4/include:/gnu/store/lpkf3ydcdvxn8gcrzaq9cp3ri05h8qhs-file-5.38/include:/gnu/store/9iwlsj7d6ffqhshy8qshf7p4fqwfwrvn-gawk-5.0.1/include:/gnu/store/b7jbh7kzzig0bxfswdj8nfj9bkljyyya-make-4.3/include:/gnu/store/50lyzn9bz6x4da66648kry29wn8afird-binutils-2.34/include:/gnu/store/afpgzln8860m6yfhxy6i8n9rywbp85cy-gcc-7.5.0/include:/gnu/store/z4li262il798hbl0l1h1k3a5g7r6bffa-glibc-2.31/include:/gnu/store/hk7l42fwxmnrnlhyiixvaqf1i1crcckp-linux-libre-headers-5.4.20/include' environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/n1jk0w2wa4vpwmixaqn2y3la1l2sizzi-bzip2-1.0.8/include:/gnu/store/7p36raqgk6vn47bflxc9bsclqiib3phi-xz-5.2.4/include:/gnu/store/lpkf3ydcdvxn8gcrzaq9cp3ri05h8qhs-file-5.38/include:/gnu/store/9iwlsj7d6ffqhshy8qshf7p4fqwfwrvn-gawk-5.0.1/include:/gnu/store/b7jbh7kzzig0bxfswdj8nfj9bkljyyya-make-4.3/include:/gnu/store/50lyzn9bz6x4da66648kry29wn8afird-binutils-2.34/include:/gnu/store/afpgzln8860m6yfhxy6i8n9rywbp85cy-gcc-7.5.0/include/c++:/gnu/store/afpgzln8860m6yfhxy6i8n9rywbp85cy-gcc-7.5.0/include:/gnu/store/z4li262il798hbl0l1h1k3a5g7r6bffa-glibc-2.31/include:/gnu/store/hk7l42fwxmnrnlhyiixvaqf1i1crcckp-linux-libre-headers-5.4.20/include' environment variable `LIBRARY_PATH' set to `/gnu/store/7nxvcm0jk30ipzbbw3k7rbljymmsqpkp-r-minimal-4.0.4/lib:/gnu/store/n1jk0w2wa4vpwmixaqn2y3la1l2sizzi-bzip2-1.0.8/lib:/gnu/store/7p36raqgk6vn47bflxc9bsclqiib3phi-xz-5.2.4/lib:/gnu/store/lpkf3ydcdvxn8gcrzaq9cp3ri05h8qhs-file-5.38/lib:/gnu/store/9iwlsj7d6ffqhshy8qshf7p4fqwfwrvn-gawk-5.0.1/lib:/gnu/store/50lyzn9bz6x4da66648kry29wn8afird-binutils-2.34/lib:/gnu/store/z4li262il798hbl0l1h1k3a5g7r6bffa-glibc-2.31/lib:/gnu/store/rzk3v28mhi4m7sh0qippp9a5rzy03rkg-glibc-2.31-static/lib:/gnu/store/x6i3vfg4gaqd42cqb6mzk52v4lds1467-glibc-utf8-locales-2.31/lib' environment variable `GUIX_LOCPATH' set to `/gnu/store/x6i3vfg4gaqd42cqb6mzk52v4lds1467-glibc-utf8-locales-2.31/lib/locale' phase `set-paths' succeeded after 0.0 seconds starting phase `install-locale' using 'en_US.utf8' locale for category "LC_ALL" phase `install-locale' succeeded after 0.0 seconds starting phase `unpack' biomaRt/DESCRIPTION biomaRt/NAMESPACE biomaRt/NEWS biomaRt/R/ biomaRt/R/biomaRt.R biomaRt/R/biomaRtClasses.R biomaRt/R/caching.R biomaRt/R/ensembl.R biomaRt/R/methods-Mart.R biomaRt/R/utilityFunctions.R biomaRt/R/zzz.R biomaRt/README.md biomaRt/build/ biomaRt/build/vignette.rds biomaRt/inst/ biomaRt/inst/CITATION biomaRt/inst/doc/ biomaRt/inst/doc/accessing_ensembl.R biomaRt/inst/doc/accessing_ensembl.Rmd biomaRt/inst/doc/accessing_ensembl.html biomaRt/inst/doc/biomaRt.R biomaRt/inst/doc/biomaRt.Rmd biomaRt/inst/doc/biomaRt.html biomaRt/inst/scripts/ biomaRt/inst/scripts/Integration-NP.R biomaRt/man/ biomaRt/man/Mart-class.Rd biomaRt/man/NP2009code.Rd biomaRt/man/attributePages.Rd biomaRt/man/biomartCache.Rd biomaRt/man/exportFASTA.Rd biomaRt/man/filterOptions.Rd biomaRt/man/filterType.Rd biomaRt/man/getBM.Rd biomaRt/man/getBMlist.Rd biomaRt/man/getGene.Rd biomaRt/man/getLDS.Rd biomaRt/man/getSequence.Rd biomaRt/man/listAttributes.Rd biomaRt/man/listDatasets.Rd biomaRt/man/listEnsembl.Rd biomaRt/man/listEnsemblArchives.Rd biomaRt/man/listFilterValues.Rd biomaRt/man/listFilters.Rd biomaRt/man/listMarts.Rd biomaRt/man/select.Rd biomaRt/man/useDataset.Rd biomaRt/man/useEnsembl.Rd biomaRt/man/useMart.Rd biomaRt/tests/ biomaRt/tests/testthat/ biomaRt/tests/testthat.R biomaRt/tests/testthat/test_ensemblFunctions.R biomaRt/tests/testthat/test_getBM.R biomaRt/tests/testthat/test_getLDS.R biomaRt/tests/testthat/test_listAndSearch.R biomaRt/tests/testthat/test_listMarts.R biomaRt/tests/testthat/test_martCheck.R biomaRt/tests/testthat/test_useMart.R biomaRt/tests/testthat/test_utilityFunctions.R biomaRt/tests/testthat/test_z_cache.R biomaRt/tests/testthat/test_zzz.R biomaRt/vignettes/ biomaRt/vignettes/accessing_ensembl.Rmd biomaRt/vignettes/biomaRt.Rmd biomaRt/vignettes/filtervalues.png biomaRt/vignettes/style.css phase `unpack' succeeded after 0.0 seconds starting phase `patch-usr-bin-file' phase `patch-usr-bin-file' succeeded after 0.0 seconds starting phase `patch-source-shebangs' phase `patch-source-shebangs' succeeded after 0.0 seconds starting phase `patch-generated-file-shebangs' phase `patch-generated-file-shebangs' succeeded after 0.0 seconds starting phase `install' * installing *source* package ‘biomaRt’ ... ** using staged installation ** R ** inst ** tests ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Possible Ensembl SSL connectivity problems detected. Please see the 'Connection Troubleshooting' section of the biomaRt vignette vignette('accessing_ensembl', package = 'biomaRt')Error in curl::curl_fetch_memory(url, handle = handle) : Could not resolve host: www.ensembl.org ** testing if installed package can be loaded from final location Possible Ensembl SSL connectivity problems detected. Please see the 'Connection Troubleshooting' section of the biomaRt vignette vignette('accessing_ensembl', package = 'biomaRt')Error in curl::curl_fetch_memory(url, handle = handle) : Could not resolve host: www.ensembl.org ** testing if installed package keeps a record of temporary installation path * DONE (biomaRt) phase `install' succeeded after 36.4 seconds starting phase `check' Testing examples for package ‘biomaRt’ phase `check' succeeded after 5.8 seconds starting phase `patch-shebangs' phase `patch-shebangs' succeeded after 0.0 seconds starting phase `strip' phase `strip' succeeded after 0.0 seconds starting phase `validate-runpath' phase `validate-runpath' succeeded after 0.0 seconds starting phase `validate-documentation-location' phase `validate-documentation-location' succeeded after 0.0 seconds starting phase `delete-info-dir-file' phase `delete-info-dir-file' succeeded after 0.0 seconds starting phase `patch-dot-desktop-files' phase `patch-dot-desktop-files' succeeded after 0.0 seconds starting phase `install-license-files' installing 0 license files from '.' phase `install-license-files' succeeded after 0.0 seconds starting phase `reset-gzip-timestamps' phase `reset-gzip-timestamps' succeeded after 0.0 seconds starting phase `compress-documentation' phase `compress-documentation' succeeded after 0.0 seconds