WARNING: (guile-user): imported module (guix build utils) overrides core binding `delete' starting phase `separate-from-pid1' build process now running as PID 18 phase `separate-from-pid1' succeeded after 0.0 seconds starting phase `set-SOURCE-DATE-EPOCH' phase `set-SOURCE-DATE-EPOCH' succeeded after 0.0 seconds starting phase `set-paths' environment variable `PATH' set to `/gnu/store/xf9q2qibn5vb6cy6jb3ifkrh4wql7vxy-tar-1.34/bin:/gnu/store/5g3pia8fi48qvaqhb0xqw1j5yrxfkpbm-gzip-1.13/bin:/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/bin:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/bin:/gnu/store/l1vf4qc0b70pzxqgz72sm4rj7b5fa1w0-diffutils-3.10/bin:/gnu/store/ihhhssc16ii48rds45i7v356l7p721ri-patch-2.7.6/bin:/gnu/store/w7isjvmf0qcs290vjwb7p3rjyfx0dn4s-findutils-4.9.0/bin:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/bin:/gnu/store/y8khv5c0z35xd5wh3lga1npkrg4n53wm-zstd-1.5.2/bin:/gnu/store/8mapjfzb13assv6nd4kph3csvqydk6ym-sed-4.8/bin:/gnu/store/ysla2nchzpzpr9gwhwv2ihm26hriiqxg-grep-3.11/bin:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/bin:/gnu/store/62c9pawfdpv1qrgavs8amadbwz8zfiaf-coreutils-9.1/bin:/gnu/store/lx366j1ydprzjyx6gyhjg3095m0swwqg-make-4.4.1/bin:/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin:/gnu/store/cfzwm4yq78c39iqxlr146jr2lk1rl09c-ld-wrapper-0/bin:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/bin:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/bin:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/bin:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/sbin' environment variable `BASH_LOADABLES_PATH' unset environment variable `C_INCLUDE_PATH' set to `/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/include:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/include:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/include:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/include:/gnu/store/lx366j1ydprzjyx6gyhjg3095m0swwqg-make-4.4.1/include:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/include:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/include:/gnu/store/9xcpby78v4ydigv3s1rxc8ndyl2ni95m-linux-libre-headers-5.15.49/include' environment variable `CPLUS_INCLUDE_PATH' set to `/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/include:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/include:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/include:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/include:/gnu/store/lx366j1ydprzjyx6gyhjg3095m0swwqg-make-4.4.1/include:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/include:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include/c++:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/include:/gnu/store/9xcpby78v4ydigv3s1rxc8ndyl2ni95m-linux-libre-headers-5.15.49/include' environment variable `OBJC_INCLUDE_PATH' set to `/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/include:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/include:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/include:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/include:/gnu/store/lx366j1ydprzjyx6gyhjg3095m0swwqg-make-4.4.1/include:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/include:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/include:/gnu/store/9xcpby78v4ydigv3s1rxc8ndyl2ni95m-linux-libre-headers-5.15.49/include' environment variable `OBJCPLUS_INCLUDE_PATH' set to `/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/include:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/include:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/include:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/include:/gnu/store/lx366j1ydprzjyx6gyhjg3095m0swwqg-make-4.4.1/include:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/include:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include/c++:/gnu/store/zcvhj876402zaz3cd2j6s2k4y4fnzdf7-gcc-11.4.0/include:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/include:/gnu/store/9xcpby78v4ydigv3s1rxc8ndyl2ni95m-linux-libre-headers-5.15.49/include' environment variable `LIBRARY_PATH' set to `/gnu/store/7g02j4v5hqpp6pdli5wsxls4pv5r1z25-bzip2-1.0.8/lib:/gnu/store/dmyjj7h2s2a2w5mcq6vacn3g7bxlcqfv-file-5.45/lib:/gnu/store/77jdcly3xkn8banp17vpfqm8f5vak8wc-gawk-5.3.0/lib:/gnu/store/ycv1hhqj8ny80xbdprcjyzhmyss1g2p3-xz-5.4.5/lib:/gnu/store/pqai4n95zn5wdw430gslb00sb967jdg8-binutils-2.41/lib:/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/lib:/gnu/store/s21dvcsxf4ynf9jsip352z568knxb5hp-glibc-2.39-static/lib' environment variable `GUIX_LOCPATH' set to `/gnu/store/3gvs8sw95ldfypr1n688svl5brwdmdi9-glibc-2.39/lib/locale' environment variable `TZDIR' unset phase `set-paths' succeeded after 0.0 seconds starting phase `install-locale' using 'C.UTF-8' locale for category "LC_ALL" phase `install-locale' succeeded after 0.0 seconds starting phase `unpack' `/gnu/store/v64806snqbl838i7ppq2j0nygyyqp3hf-gffcompare-0.10.15-1.be56ef4-checkout/README.md' -> `./README.md' `/gnu/store/v64806snqbl838i7ppq2j0nygyyqp3hf-gffcompare-0.10.15-1.be56ef4-checkout/gtf_tracking.h' -> `./gtf_tracking.h' `/gnu/store/v64806snqbl838i7ppq2j0nygyyqp3hf-gffcompare-0.10.15-1.be56ef4-checkout/Makefile' -> `./Makefile' `/gnu/store/v64806snqbl838i7ppq2j0nygyyqp3hf-gffcompare-0.10.15-1.be56ef4-checkout/prep_source.sh' -> `./prep_source.sh' `/gnu/store/v64806snqbl838i7ppq2j0nygyyqp3hf-gffcompare-0.10.15-1.be56ef4-checkout/prep_linux.sh' -> `./prep_linux.sh' `/gnu/store/v64806snqbl838i7ppq2j0nygyyqp3hf-gffcompare-0.10.15-1.be56ef4-checkout/gtf_tracking.cpp' -> `./gtf_tracking.cpp' `/gnu/store/v64806snqbl838i7ppq2j0nygyyqp3hf-gffcompare-0.10.15-1.be56ef4-checkout/prep_mac.sh' -> `./prep_mac.sh' `/gnu/store/v64806snqbl838i7ppq2j0nygyyqp3hf-gffcompare-0.10.15-1.be56ef4-checkout/LICENSE' -> `./LICENSE' `/gnu/store/v64806snqbl838i7ppq2j0nygyyqp3hf-gffcompare-0.10.15-1.be56ef4-checkout/tag_git.sh' -> `./tag_git.sh' `/gnu/store/v64806snqbl838i7ppq2j0nygyyqp3hf-gffcompare-0.10.15-1.be56ef4-checkout/gffcompare.cpp' -> `./gffcompare.cpp' phase `unpack' succeeded after 0.0 seconds starting phase `bootstrap' no 'configure.ac' or anything like that, doing nothing phase `bootstrap' succeeded after 0.0 seconds starting phase `patch-usr-bin-file' phase `patch-usr-bin-file' succeeded after 0.0 seconds starting phase `patch-source-shebangs' patch-shebang: ./prep_linux.sh: changing `/bin/bash' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/bash' patch-shebang: ./prep_mac.sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./prep_source.sh: changing `/bin/sh' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/sh' patch-shebang: ./tag_git.sh: changing `/bin/bash' to `/gnu/store/d7q6yazfa1bxf4x7p9n3b99hn97q6bvw-bash-minimal-5.1.16/bin/bash' phase `patch-source-shebangs' succeeded after 0.0 seconds starting phase `patch-generated-file-shebangs' phase `patch-generated-file-shebangs' succeeded after 0.0 seconds starting phase `copy-gclib-source' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/GAlnExtend.h' -> `../gclib/GAlnExtend.h' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/GList.hh' -> `../gclib/GList.hh' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/GBitVec.h' -> `../gclib/GBitVec.h' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/gff.h' -> `../gclib/gff.h' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/GapAssem.cpp' -> `../gclib/GapAssem.cpp' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/GArgs.cpp' -> `../gclib/GArgs.cpp' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/proc_mem.h' -> `../gclib/proc_mem.h' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/gstopwatch.h' -> `../gclib/gstopwatch.h' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/GCdbYank.h' -> `../gclib/GCdbYank.h' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/gsocket.h' -> `../gclib/gsocket.h' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/GIntHash.hh' -> `../gclib/GIntHash.hh' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/README.md' -> `../gclib/README.md' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/GFastaIndex.h' -> `../gclib/GFastaIndex.h' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/proc_mem.cpp' -> `../gclib/proc_mem.cpp' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/gsocket.cpp' -> `../gclib/gsocket.cpp' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/GFastaIndex.cpp' -> `../gclib/GFastaIndex.cpp' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/gff.cpp' -> `../gclib/gff.cpp' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/Makefile' -> `../gclib/Makefile' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/GVec.hh' -> `../gclib/GVec.hh' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/LICENSE.txt' -> `../gclib/LICENSE.txt' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/gcdb.h' -> `../gclib/gcdb.h' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/codons.cpp' -> `../gclib/codons.cpp' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/gdna.cpp' -> `../gclib/gdna.cpp' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/gdna.h' -> `../gclib/gdna.h' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/GBase.h' -> `../gclib/GBase.h' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/GapAssem.h' -> `../gclib/GapAssem.h' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/codons.h' -> `../gclib/codons.h' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/gcdb.cpp' -> `../gclib/gcdb.cpp' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/GCdbYank.cpp' -> `../gclib/GCdbYank.cpp' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/GBam.h' -> `../gclib/GBam.h' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/GAlnExtend.cpp' -> `../gclib/GAlnExtend.cpp' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/.gitignore' -> `../gclib/.gitignore' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/GFaSeqGet.cpp' -> `../gclib/GFaSeqGet.cpp' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/gstopwatch.cpp' -> `../gclib/gstopwatch.cpp' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/GStr.cpp' -> `../gclib/GStr.cpp' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/GFastaFile.h' -> `../gclib/GFastaFile.h' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/GFaSeqGet.h' -> `../gclib/GFaSeqGet.h' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/gdimg.cpp' -> `../gclib/gdimg.cpp' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/GBase.cpp' -> `../gclib/GBase.cpp' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/GStr.h' -> `../gclib/GStr.h' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/GArgs.h' -> `../gclib/GArgs.h' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/GHash.hh' -> `../gclib/GHash.hh' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/GThreads.cpp' -> `../gclib/GThreads.cpp' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/gdimg.h' -> `../gclib/gdimg.h' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/threads.cpp' -> `../gclib/threads.cpp' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/tag_git.sh' -> `../gclib/tag_git.sh' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/GThreads.h' -> `../gclib/GThreads.h' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/gtest.cpp' -> `../gclib/gtest.cpp' `/gnu/store/4x3dc4zfx1girilf1aay0id6p9f3sfa3-gclib-0.10.3-1.be56ef4-checkout/GBam.cpp' -> `../gclib/GBam.cpp' phase `copy-gclib-source' succeeded after 0.0 seconds starting phase `build' g++ -Wall -Wextra -I../gclib -D_REENTRANT -fno-exceptions -fno-rtti -Wno-class-memaccess -g -O0 -DDEBUG -D_DEBUG -DGDEBUG -c ../gclib/GFastaIndex.cpp -o ../gclib/GFastaIndex.o g++ -Wall -Wextra -I../gclib -D_REENTRANT -fno-exceptions -fno-rtti -Wno-class-memaccess -g -O0 -DDEBUG -D_DEBUG -DGDEBUG -c ../gclib/GFaSeqGet.cpp -o ../gclib/GFaSeqGet.o g++ -Wall -Wextra -I../gclib -D_REENTRANT -fno-exceptions -fno-rtti -Wno-class-memaccess -g -O0 -DDEBUG -D_DEBUG -DGDEBUG -c ../gclib/gff.cpp -o ../gclib/gff.o g++ -Wall -Wextra -I../gclib -D_REENTRANT -fno-exceptions -fno-rtti -Wno-class-memaccess -g -O0 -DDEBUG -D_DEBUG -DGDEBUG -c gtf_tracking.cpp -o gtf_tracking.o g++ -Wall -Wextra -I../gclib -D_REENTRANT -fno-exceptions -fno-rtti -Wno-class-memaccess -g -O0 -DDEBUG -D_DEBUG -DGDEBUG -c ../gclib/gdna.cpp -o ../gclib/gdna.o g++ -Wall -Wextra -I../gclib -D_REENTRANT -fno-exceptions -fno-rtti -Wno-class-memaccess -g -O0 -DDEBUG -D_DEBUG -DGDEBUG -c ../gclib/codons.cpp -o ../gclib/codons.o g++ -Wall -Wextra -I../gclib -D_REENTRANT -fno-exceptions -fno-rtti -Wno-class-memaccess -g -O0 -DDEBUG -D_DEBUG -DGDEBUG -c ../gclib/GBase.cpp -o ../gclib/GBase.o g++ -Wall -Wextra -I../gclib -D_REENTRANT -fno-exceptions -fno-rtti -Wno-class-memaccess -g -O0 -DDEBUG -D_DEBUG -DGDEBUG -c ../gclib/GStr.cpp -o ../gclib/GStr.o g++ -Wall -Wextra -I../gclib -D_REENTRANT -fno-exceptions -fno-rtti -Wno-class-memaccess -g -O0 -DDEBUG -D_DEBUG -DGDEBUG -c ../gclib/GArgs.cpp -o ../gclib/GArgs.o g++ -Wall -Wextra -I../gclib -D_REENTRANT -fno-exceptions -fno-rtti -Wno-class-memaccess -g -O0 -DDEBUG -D_DEBUG -DGDEBUG -c gffcompare.cpp -o gffcompare.o ../gclib/gdna.cpp: In function ‘char* reverseComplement(char*, int)’: ../gclib/gdna.cpp:56:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 56 | register char c; | ^ In file included from ../gclib/GFastaIndex.h:11, from ../gclib/GFastaIndex.cpp:8: ../gclib/GHash.hh: In member function ‘char* GHash::NextKey()’: ../gclib/GHash.hh:547:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 547 | register int pos=fCurrentEntry; | ^~~ ../gclib/GHash.hh: In member function ‘OBJ* GHash::NextData()’: ../gclib/GHash.hh:560:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 560 | register int pos=fCurrentEntry; | ^~~ ../gclib/GHash.hh: In member function ‘OBJ* GHash::NextData(char*&)’: ../gclib/GHash.hh:574:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 574 | register int pos=fCurrentEntry; | ^~~ ../gclib/GHash.hh: In member function ‘int GHash::First() const’: ../gclib/GHash.hh:592:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 592 | register int pos=0; | ^~~ ../gclib/GHash.hh: In member function ‘int GHash::Last() const’: ../gclib/GHash.hh:600:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 600 | register int pos=fCapacity-1; | ^~~ ../gclib/GHash.hh: In member function ‘void GHash::Clear()’: ../gclib/GHash.hh:627:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 627 | register int i; | ^ ../gclib/GHash.hh: In destructor ‘virtual GHash::~GHash()’: ../gclib/GHash.hh:684:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 684 | register int i; | ^ In file included from ../gclib/GFastaIndex.h:11, from ../gclib/GFaSeqGet.h:3, from ../gclib/GFaSeqGet.cpp:1: ../gclib/GHash.hh: In member function ‘char* GHash::NextKey()’: ../gclib/GHash.hh:547:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 547 | register int pos=fCurrentEntry; | ^~~ ../gclib/GHash.hh: In member function ‘OBJ* GHash::NextData()’: ../gclib/GHash.hh:560:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 560 | register int pos=fCurrentEntry; | ^~~ ../gclib/GHash.hh: In member function ‘OBJ* GHash::NextData(char*&)’: ../gclib/GHash.hh:574:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 574 | register int pos=fCurrentEntry; | ^~~ ../gclib/GHash.hh: In member function ‘int GHash::First() const’: ../gclib/GHash.hh:592:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 592 | register int pos=0; | ^~~ ../gclib/GHash.hh: In member function ‘int GHash::Last() const’: ../gclib/GHash.hh:600:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 600 | register int pos=fCapacity-1; | ^~~ ../gclib/GHash.hh: In member function ‘void GHash::Clear()’: ../gclib/GHash.hh:627:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 627 | register int i; | ^ ../gclib/GBase.cpp: In function ‘bool GstrEq(const char*, const char*)’: ../gclib/GBase.cpp:237:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 237 | register int i=0; | ^ ../gclib/GHash.hh: In destructor ‘virtual GHash::~GHash()’: ../gclib/GHash.hh:684:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 684 | register int i; | ^ ../gclib/GBase.cpp: In function ‘bool GstriEq(const char*, const char*)’: ../gclib/GBase.cpp:247:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 247 | register int i=0; | ^ In file included from ../gclib/GFastaIndex.h:11, from ../gclib/GFaSeqGet.h:3, from ../gclib/gff.h:9, from gtf_tracking.h:12, from gtf_tracking.cpp:1: ../gclib/GHash.hh: In member function ‘char* GHash::NextKey()’: ../gclib/GHash.hh:547:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 547 | register int pos=fCurrentEntry; | ^~~ ../gclib/GBase.cpp: In function ‘int Gstricmp(const char*, const char*, int)’: ../gclib/GBase.cpp:256:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 256 | register int ua, ub; | ^~ ../gclib/GBase.cpp:256:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 256 | register int ua, ub; | ^~ ../gclib/GHash.hh: In member function ‘OBJ* GHash::NextData()’: ../gclib/GHash.hh:560:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 560 | register int pos=fCurrentEntry; | ^~~ ../gclib/GHash.hh: In member function ‘OBJ* GHash::NextData(char*&)’: ../gclib/GHash.hh:574:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 574 | register int pos=fCurrentEntry; | ^~~ ../gclib/GHash.hh: In member function ‘int GHash::First() const’: ../gclib/GHash.hh:592:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 592 | register int pos=0; | ^~~ ../gclib/GHash.hh: In member function ‘int GHash::Last() const’: ../gclib/GHash.hh:600:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 600 | register int pos=fCapacity-1; | ^~~ ../gclib/GHash.hh: In member function ‘void GHash::Clear()’: ../gclib/GHash.hh:627:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 627 | register int i; | ^ ../gclib/GHash.hh: In destructor ‘virtual GHash::~GHash()’: ../gclib/GHash.hh:684:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 684 | register int i; | ^ ../gclib/GStr.cpp: In member function ‘GStr& GStr::trim(char)’: ../gclib/GStr.cpp:427:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 427 | register int istart; | ^~~~~~ ../gclib/GStr.cpp:428:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 428 | register int iend; | ^~~~ ../gclib/GStr.cpp: In member function ‘GStr& GStr::trim(const char*)’: ../gclib/GStr.cpp:447:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 447 | register int istart; | ^~~~~~ ../gclib/GStr.cpp:448:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 448 | register int iend; | ^~~~ ../gclib/GStr.cpp: In member function ‘GStr& GStr::trimR(char)’: ../gclib/GStr.cpp:468:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 468 | register int iend; | ^~~~ ../gclib/GStr.cpp: In member function ‘GStr& GStr::trimR(const char*)’: ../gclib/GStr.cpp:491:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 491 | register int iend; | ^~~~ ../gclib/GStr.cpp: In member function ‘GStr& GStr::chomp(const char*)’: ../gclib/GStr.cpp:514:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 514 | register int iend; | ^~~~ In file included from ../gclib/GFastaIndex.h:11, from ../gclib/GFaSeqGet.h:3, from ../gclib/gff.h:9, from ../gclib/gff.cpp:1: ../gclib/GHash.hh: In member function ‘char* GHash::NextKey()’: ../gclib/GHash.hh:547:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 547 | register int pos=fCurrentEntry; | ^~~ ../gclib/GStr.cpp: In member function ‘GStr& GStr::trimL(char)’: ../gclib/GStr.cpp:540:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 540 | register int istart; | ^~~~~~ ../gclib/GHash.hh: In member function ‘OBJ* GHash::NextData()’: ../gclib/GHash.hh:560:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 560 | register int pos=fCurrentEntry; | ^~~ ../gclib/GHash.hh: In member function ‘OBJ* GHash::NextData(char*&)’: ../gclib/GHash.hh:574:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 574 | register int pos=fCurrentEntry; | ^~~ ../gclib/GHash.hh: In member function ‘int GHash::First() const’: ../gclib/GHash.hh:592:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 592 | register int pos=0; | ^~~ ../gclib/GStr.cpp: In member function ‘GStr& GStr::trimL(const char*)’: ../gclib/GStr.cpp:557:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 557 | register int istart; | ^~~~~~ ../gclib/GHash.hh: In member function ‘int GHash::Last() const’: ../gclib/GHash.hh:600:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 600 | register int pos=fCapacity-1; | ^~~ ../gclib/GHash.hh: In member function ‘void GHash::Clear()’: ../gclib/GHash.hh:627:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 627 | register int i; | ^ ../gclib/GHash.hh: In destructor ‘virtual GHash::~GHash()’: ../gclib/GHash.hh:684:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 684 | register int i; | ^ ../gclib/GBase.cpp: In function ‘int strhash(const char*)’: ../gclib/GBase.cpp:665:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 665 | register int h=0; | ^ ../gclib/GBase.cpp:666:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 666 | register int g; | ^ ../gclib/GStr.cpp: In member function ‘bool GStr::is_space() const’: ../gclib/GStr.cpp:703:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 703 | for (register const char *p = my_data->chars; *p; p++) | ^ ../gclib/GStr.cpp: In member function ‘GStr& GStr::upper()’: ../gclib/GStr.cpp:1086:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1086 | for (register char *p = chrs(); *p; p++) | ^ ../gclib/GStr.cpp: In member function ‘GStr& GStr::lower()’: ../gclib/GStr.cpp:1097:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1097 | for (register char *p = chrs(); *p; p++) | ^ In file included from ../gclib/GFastaIndex.h:11, from ../gclib/GFaSeqGet.h:3, from ../gclib/gff.h:9, from gtf_tracking.h:12, from gffcompare.cpp:4: ../gclib/GHash.hh: In member function ‘char* GHash::NextKey()’: ../gclib/GHash.hh:547:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 547 | register int pos=fCurrentEntry; | ^~~ ../gclib/GHash.hh: In member function ‘OBJ* GHash::NextData()’: ../gclib/GHash.hh:560:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 560 | register int pos=fCurrentEntry; | ^~~ ../gclib/GHash.hh: In member function ‘OBJ* GHash::NextData(char*&)’: ../gclib/GHash.hh:574:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 574 | register int pos=fCurrentEntry; | ^~~ ../gclib/GHash.hh: In member function ‘int GHash::First() const’: ../gclib/GHash.hh:592:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 592 | register int pos=0; | ^~~ ../gclib/GHash.hh: In member function ‘int GHash::Last() const’: ../gclib/GHash.hh:600:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 600 | register int pos=fCapacity-1; | ^~~ ../gclib/GHash.hh: In member function ‘void GHash::Clear()’: ../gclib/GHash.hh:627:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 627 | register int i; | ^ ../gclib/GHash.hh: In destructor ‘virtual GHash::~GHash()’: ../gclib/GHash.hh:684:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 684 | register int i; | ^ ../gclib/GHash.hh: In instantiation of ‘GHash::~GHash() [with OBJ = GFastaRec]’: ../gclib/GFastaIndex.h:58:59: required from here ../gclib/GHash.hh:684:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] ../gclib/GHash.hh: In instantiation of ‘void GHash::Clear() [with OBJ = GFastaRec]’: ../gclib/GFastaIndex.cpp:33:18: required from here ../gclib/GHash.hh:627:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 627 | register int i; | ^ ../gclib/GHash.hh: In instantiation of ‘OBJ* GHash::NextData() [with OBJ = GFastaRec]’: ../gclib/GFastaIndex.cpp:162:31: required from here ../gclib/GHash.hh:560:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 560 | register int pos=fCurrentEntry; | ^~~ ../gclib/GHash.hh: In instantiation of ‘GHash::~GHash() [with OBJ = GFastaRec]’: ../gclib/GFastaIndex.h:58:59: required from here ../gclib/GHash.hh:684:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] ../gclib/GHash.hh: In instantiation of ‘GHash::~GHash() [with OBJ = GFastaRec]’: ../gclib/GFastaIndex.h:58:59: required from here ../gclib/GHash.hh:684:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] ../gclib/GHash.hh: In instantiation of ‘GHash::~GHash() [with OBJ = GffNameInfo]’: ../gclib/gff.h:283:77: required from here ../gclib/GHash.hh:684:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] ../gclib/GHash.hh: In instantiation of ‘GHash::~GHash() [with OBJ = int]’: ../gclib/gff.h:1089:63: required from here ../gclib/GHash.hh:684:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] ../gclib/GHash.hh: In instantiation of ‘GHash::~GHash() [with OBJ = GPVec]’: ../gclib/gff.h:1089:84: required from here ../gclib/GHash.hh:684:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] ../gclib/GHash.hh: In instantiation of ‘void GHash::Clear() [with OBJ = int]’: ../gclib/gff.h:1128:26: required from here ../gclib/GHash.hh:627:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 627 | register int i; | ^ ../gclib/GHash.hh: In instantiation of ‘void GHash::Clear() [with OBJ = GPVec]’: ../gclib/gff.h:1129:18: required from here ../gclib/GHash.hh:627:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] ../gclib/GHash.hh: In instantiation of ‘GHash::~GHash() [with OBJ = GFastaRec]’: ../gclib/GFastaIndex.h:58:59: required from here ../gclib/GHash.hh:684:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] ../gclib/GHash.hh: In instantiation of ‘GHash::~GHash() [with OBJ = GffNameInfo]’: ../gclib/gff.h:283:77: required from here ../gclib/GHash.hh:684:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] ../gclib/GHash.hh: In instantiation of ‘GHash::~GHash() [with OBJ = int]’: ../gclib/gff.h:1089:63: required from here ../gclib/GHash.hh:684:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] ../gclib/GHash.hh: In instantiation of ‘GHash::~GHash() [with OBJ = GPVec]’: ../gclib/gff.h:1089:84: required from here ../gclib/GHash.hh:684:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] ../gclib/GHash.hh: In instantiation of ‘void GHash::Clear() [with OBJ = int]’: ../gclib/gff.h:1128:26: required from here ../gclib/GHash.hh:627:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 627 | register int i; | ^ ../gclib/GHash.hh: In instantiation of ‘void GHash::Clear() [with OBJ = GPVec]’: ../gclib/gff.h:1129:18: required from here ../gclib/GHash.hh:627:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] ../gclib/GHash.hh: In instantiation of ‘GHash::~GHash() [with OBJ = CNonExon]’: ../gclib/gff.cpp:1445:19: required from here ../gclib/GHash.hh:684:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 684 | register int i; | ^ ../gclib/GHash.hh: In instantiation of ‘GHash::~GHash() [with OBJ = GFastaRec]’: ../gclib/GFastaIndex.h:58:59: required from here ../gclib/GHash.hh:684:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] ../gclib/GHash.hh: In instantiation of ‘GHash::~GHash() [with OBJ = GffNameInfo]’: ../gclib/gff.h:283:77: required from here ../gclib/GHash.hh:684:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] ../gclib/GHash.hh: In instantiation of ‘GHash::~GHash() [with OBJ = int]’: ../gclib/gff.h:1089:63: required from here ../gclib/GHash.hh:684:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] ../gclib/GHash.hh: In instantiation of ‘GHash::~GHash() [with OBJ = GPVec]’: ../gclib/gff.h:1089:84: required from here ../gclib/GHash.hh:684:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] ../gclib/GHash.hh: In instantiation of ‘void GHash::Clear() [with OBJ = int]’: ../gclib/gff.h:1128:26: required from here ../gclib/GHash.hh:627:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 627 | register int i; | ^ ../gclib/GHash.hh: In instantiation of ‘void GHash::Clear() [with OBJ = GPVec]’: ../gclib/gff.h:1129:18: required from here ../gclib/GHash.hh:627:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] ../gclib/GHash.hh: In instantiation of ‘GHash::~GHash() [with OBJ = GStr]’: ../gclib/GHash.hh:683:22: required from here ../gclib/GHash.hh:684:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 684 | register int i; | ^ g++ -g -o gffcompare ../gclib/GFastaIndex.o ../gclib/GFaSeqGet.o ../gclib/gff.o gtf_tracking.o ../gclib/gdna.o ../gclib/codons.o ../gclib/GBase.o ../gclib/GStr.o ../gclib/GArgs.o gffcompare.o phase `build' succeeded after 3.8 seconds starting phase `check' test suite not run phase `check' succeeded after 0.0 seconds starting phase `install' phase `install' succeeded after 0.0 seconds starting phase `patch-shebangs' phase `patch-shebangs' succeeded after 0.0 seconds starting phase `strip' stripping binaries in "/gnu/store/wi8phhmxjjpmwsmbdbir9np36f3icxa6-gffcompare-0.10.15-1.be56ef4/bin" with "strip" and flags ("--strip-unneeded" "--enable-deterministic-archives") phase `strip' succeeded after 0.0 seconds starting phase `validate-runpath' validating RUNPATH of 1 binaries in "/gnu/store/wi8phhmxjjpmwsmbdbir9np36f3icxa6-gffcompare-0.10.15-1.be56ef4/bin"... phase `validate-runpath' succeeded after 0.0 seconds starting phase `validate-documentation-location' phase `validate-documentation-location' succeeded after 0.0 seconds starting phase `delete-info-dir-file' phase `delete-info-dir-file' succeeded after 0.0 seconds starting phase `patch-dot-desktop-files' phase `patch-dot-desktop-files' succeeded after 0.0 seconds starting phase `make-dynamic-linker-cache' created '/gnu/store/wi8phhmxjjpmwsmbdbir9np36f3icxa6-gffcompare-0.10.15-1.be56ef4/etc/ld.so.cache' from 2 library search path entries phase `make-dynamic-linker-cache' succeeded after 0.1 seconds starting phase `install-license-files' installing 1 license files from '.' phase `install-license-files' succeeded after 0.0 seconds starting phase `reset-gzip-timestamps' phase `reset-gzip-timestamps' succeeded after 0.0 seconds starting phase `compress-documentation' phase `compress-documentation' succeeded after 0.0 seconds